Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 87 of 425
Found at i:25022211 original size:99 final size:99
Alignment explanation
Indices: 25021828--25022321 Score: 688
Period size: 100 Copynumber: 5.0 Consensus size: 99
25021818 AAAAGAAAAG
**
25021828 AAACTATTTTAACTTCCAAGTATTTCAAGTTTC-AAACCGAGGAATGATGTTCCATATACCAATA
1 AAACTATTTTAACTTCCAAGTATTTCAAG-TTCAAAACCGAGGAATGATGTTCCATATGTCAATA
* * *
25021892 TGGAGGTGCTACTATAAATTTCAGTTGAAGCTAGC
65 TGGAGCTGCTACTGTAAATTTCAGTTGAAGCTAGT
* **
25021927 AAACTATTTTAACTT-CAAGTATTTCAAGTTCAAAACCGAGGACTGATACTCCATATGTCAATAT
1 AAACTATTTTAACTTCCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATAT
*
25021991 GGAGCTGCTACTGTAAATTTCTGTTGAAGCTAGT
66 GGAGCTGCTACTGTAAATTTCAGTTGAAGCTAGT
* * * *
25022025 AAACTATTTTAACTTCCAAGTATTTAAAAATTCAAAACCGAGGTATGATGTTCCATATGTCAAAA
1 AAACTATTTTAACTTCCAAGTATTT-CAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATA
* *
25022090 TAGAGCTGCTACTGTAAATTTCAGTAGAAGCTAGT
65 TGGAGCTGCTACTGTAAATTTCAGTTGAAGCTAGT
* *
25022125 AAACTATTTTTAACTT-TAAGTATTTCAAGTTCAAAACCGAGGACTGATGTTCCATATGTCAATA
1 AAACTA-TTTTAACTTCCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATA
* * *
25022189 TGGAGCAGCTACTGTAAATTTCAGTTGCAGCTCGT
65 TGGAGCTGCTACTGTAAATTTCAGTTGAAGCTAGT
* * * * *
25022224 AAACAATTTTAACTTCTCAAGTATTTCAAGTTCAAAACCGAGAAATAATGCTCCATATGTAAATA
1 AAACTATTTTAACTTC-CAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATA
* *
25022289 TGGAGCAGATACTGTAAATTTCAGTTGAAGCTA
65 TGGAGCTGCTACTGTAAATTTCAGTTGAAGCTA
25022322 ACAAAGTATT
Statistics
Matches: 349, Mismatches: 40, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
97 3 0.01
98 94 0.27
99 93 0.27
100 150 0.43
101 9 0.03
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (99 bp):
AAACTATTTTAACTTCCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATAT
GGAGCTGCTACTGTAAATTTCAGTTGAAGCTAGT
Found at i:25022367 original size:29 final size:29
Alignment explanation
Indices: 25022334--25022395 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
25022324 AAAGTATTTC
** *
25022334 AAGTTCAAAACTGAGGACTGATGTTCCAT
1 AAGTTCAAAACCAAGGACTGATATTCCAT
*
25022363 AAGTTCAAAACCAAGGAGTGATATTCCAT
1 AAGTTCAAAACCAAGGACTGATATTCCAT
25022392 AAGT
1 AAGT
25022396 CAATATGGAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (29 bp):
AAGTTCAAAACCAAGGACTGATATTCCAT
Found at i:25024413 original size:23 final size:23
Alignment explanation
Indices: 25024381--25024427 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
25024371 GATAGTATTT
25024381 TAATTAACTCCTTAAATAATATA
1 TAATTAACTCCTTAAATAATATA
*
25024404 TAATTTACTCCTTAAATAATATA
1 TAATTAACTCCTTAAATAATATA
25024427 T
1 T
25024428 CAAACTTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.43
Consensus pattern (23 bp):
TAATTAACTCCTTAAATAATATA
Found at i:25027370 original size:29 final size:29
Alignment explanation
Indices: 25027331--25027407 Score: 111
Period size: 29 Copynumber: 2.6 Consensus size: 29
25027321 CTTAATAATC
25027331 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGTA-TTTCA
*
25027361 AACTCGCACACTTAGTGCCATGTATTTCA
1 AACCCGCACACTTAGTGCCATGTATTTCA
*
25027390 AGCCCGCACACTTAGTGC
1 AACCCGCACACTTAGTGC
25027408 TATTCTCTCA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGTATTTCA
Found at i:25027959 original size:2 final size:2
Alignment explanation
Indices: 25027952--25027983 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
25027942 CCGAATATGC
25027952 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25027984 CAACTATACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25036561 original size:27 final size:29
Alignment explanation
Indices: 25036531--25036584 Score: 76
Period size: 27 Copynumber: 1.9 Consensus size: 29
25036521 GAAAGTAATG
* *
25036531 AAAATACTTTTTATT-TTT-ATTTTTAAA
1 AAAATAATTTTCATTATTTAATTTTTAAA
25036558 AAAATAATTTTCATTATTTAATTTTTA
1 AAAATAATTTTCATTATTTAATTTTTA
25036585 TAAATCGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 13 0.57
28 3 0.13
29 7 0.30
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (29 bp):
AAAATAATTTTCATTATTTAATTTTTAAA
Found at i:25036954 original size:26 final size:26
Alignment explanation
Indices: 25036921--25036980 Score: 81
Period size: 25 Copynumber: 2.3 Consensus size: 26
25036911 GATCATATAG
25036921 AAAATAAAATATTT-TTA-TTTTAATA
1 AAAATAAAATATTTATTATTTTTAA-A
25036946 AAAAGT-AAATATTTATTATTTTTAAA
1 AAAA-TAAAATATTTATTATTTTTAAA
25036972 AAAATAAAA
1 AAAATAAAA
25036981 AAAAAGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
25 13 0.42
26 12 0.39
27 6 0.19
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (26 bp):
AAAATAAAATATTTATTATTTTTAAA
Found at i:25040555 original size:2 final size:2
Alignment explanation
Indices: 25040550--25040574 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
25040540 TATATATATA
25040550 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
25040575 CGAACTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:25045173 original size:10 final size:11
Alignment explanation
Indices: 25045153--25045209 Score: 59
Period size: 10 Copynumber: 5.5 Consensus size: 11
25045143 TTAGGACTTA
25045153 TTTTCATTTATC
1 TTTT-ATTTATC
25045165 TTTTA-TTATC
1 TTTTATTTATC
*
25045175 -TTTAATTATC
1 TTTTATTTATC
25045185 -TTTATTTAT-
1 TTTTATTTATC
*
25045194 TTGTATTTATC
1 TTTTATTTATC
25045205 TTTTA
1 TTTTA
25045210 GGATTTAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
9 4 0.10
10 26 0.67
11 5 0.13
12 4 0.10
ACGTcount: A:0.21, C:0.09, G:0.02, T:0.68
Consensus pattern (11 bp):
TTTTATTTATC
Found at i:25047392 original size:5 final size:5
Alignment explanation
Indices: 25047377--25047465 Score: 87
Period size: 5 Copynumber: 17.6 Consensus size: 5
25047367 TTTATTATTC
25047377 TTTATT TTTAT TTTAT TTTA- -TTAT TTTAT TTTAT TTTAT TATTA- TTTATT
1 TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T-TTAT TTTA-T
* *
25047427 TATTAC TTTAT TTTAT TTTAT TATT-T ATTAT TTTAT TTT
1 T-TTAT TTTAT TTTAT TTTAT T-TTAT TTTAT TTTAT TTT
25047466 GTTTGGGTGA
Statistics
Matches: 71, Mismatches: 4, Indels: 17
0.77 0.04 0.18
Matches are distributed among these distances:
3 3 0.04
4 5 0.07
5 49 0.69
6 11 0.15
7 3 0.04
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:25047437 original size:32 final size:32
Alignment explanation
Indices: 25047377--25047459 Score: 114
Period size: 32 Copynumber: 2.5 Consensus size: 32
25047367 TTTATTATTC
* *
25047377 TTTATTTTTATTTTATTTTATTATTTTATTTTAT
1 TTTATTATTA-TTTA-TTTATTACTTTATTTTAT
25047411 TTTATTATTATTTATTTATTACTTTATTTTAT
1 TTTATTATTATTTATTTATTACTTTATTTTAT
25047443 TTTATTATT-TATTATTT
1 TTTATTATTAT-TTATTT
25047460 TATTTTGTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
31 1 0.02
32 32 0.70
33 4 0.09
34 9 0.20
ACGTcount: A:0.23, C:0.01, G:0.00, T:0.76
Consensus pattern (32 bp):
TTTATTATTATTTATTTATTACTTTATTTTAT
Found at i:25047457 original size:10 final size:11
Alignment explanation
Indices: 25047366--25047465 Score: 95
Period size: 10 Copynumber: 9.4 Consensus size: 11
25047356 ACAACCCAAT
25047366 TTTTATTATT-
1 TTTTATTATTA
* *
25047376 CTTTATTTTTA
1 TTTTATTATTA
25047387 TTTTATTTTATTA
1 TTTTA--TTATTA
25047400 TTTTATT-TTA
1 TTTTATTATTA
25047410 TTTTATTATTA
1 TTTTATTATTA
25047421 -TTTATTTATTA
1 TTTTA-TTATTA
*
25047432 CTTTATT-TTA
1 TTTTATTATTA
25047442 TTTTATTATT-
1 TTTTATTATTA
*
25047452 TATTATT-TTA
1 TTTTATTATTA
25047462 TTTT
1 TTTT
25047466 GTTTGGGTGA
Statistics
Matches: 75, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
9 2 0.03
10 40 0.53
11 19 0.25
12 4 0.05
13 10 0.13
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:25049152 original size:10 final size:11
Alignment explanation
Indices: 25049127--25049188 Score: 62
Period size: 10 Copynumber: 6.1 Consensus size: 11
25049117 TAATTTTAGG
*
25049127 ATTTAT-TTTC
1 ATTTATCTTTT
25049137 ATTTATCTTTT
1 ATTTATCTTTT
25049148 A-TTATC-TTT
1 ATTTATCTTTT
*
25049157 AATTATC-TTT
1 ATTTATCTTTT
*
25049167 ATTTAT-TTGT
1 ATTTATCTTTT
25049177 ATTTATCTTTT
1 ATTTATCTTTT
25049188 A
1 A
25049189 GAATTTAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
9 4 0.09
10 32 0.73
11 8 0.18
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.68
Consensus pattern (11 bp):
ATTTATCTTTT
Found at i:25052144 original size:16 final size:15
Alignment explanation
Indices: 25052118--25052147 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
25052108 AATGGAATTG
25052118 CTTTCCTTCTCAATA
1 CTTTCCTTCTCAATA
25052133 CTTTCACTTCTCAAT
1 CTTTC-CTTCTCAAT
25052148 CTAAAATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.20, C:0.33, G:0.00, T:0.47
Consensus pattern (15 bp):
CTTTCCTTCTCAATA
Found at i:25061272 original size:21 final size:20
Alignment explanation
Indices: 25061242--25061280 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
25061232 GAAAACTTGT
25061242 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
25061262 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
25061281 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:25062485 original size:20 final size:20
Alignment explanation
Indices: 25062435--25062485 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
25062425 CGCCCGTGAC
*
25062435 CTTTGGGACAAGGCCATGTG
1 CTTTGGGACACGGCCATGTG
* *
25062455 CTTTGGGACACGTCCGTGTG
1 CTTTGGGACACGGCCATGTG
25062475 CTTTGGGACAC
1 CTTTGGGACAC
25062486 ACCCGTGTCC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.16, C:0.24, G:0.33, T:0.27
Consensus pattern (20 bp):
CTTTGGGACACGGCCATGTG
Found at i:25062491 original size:20 final size:20
Alignment explanation
Indices: 25062451--25062493 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
25062441 GACAAGGCCA
**
25062451 TGTGCTTTGGGACACGTCCG
1 TGTGCTTTGGGACACACCCG
25062471 TGTGCTTTGGGACACACCCG
1 TGTGCTTTGGGACACACCCG
25062491 TGT
1 TGT
25062494 CCCTTACCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.12, C:0.26, G:0.33, T:0.30
Consensus pattern (20 bp):
TGTGCTTTGGGACACACCCG
Found at i:25065023 original size:17 final size:16
Alignment explanation
Indices: 25064982--25065023 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
25064972 AAACTTCTAA
*
25064982 AATTTTTCATGCTTGC
1 AATTTTTCATGCATGC
25064998 ACA-TTTTCATGCATGC
1 A-ATTTTTCATGCATGC
25065014 AATTTATTCA
1 AATTT-TTCA
25065024 ATTTGGTCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 1 0.05
16 16 0.73
17 5 0.23
ACGTcount: A:0.26, C:0.19, G:0.10, T:0.45
Consensus pattern (16 bp):
AATTTTTCATGCATGC
Found at i:25070731 original size:21 final size:21
Alignment explanation
Indices: 25070707--25070749 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
25070697 AAAACCAATC
25070707 AATCATATTCATAATGTCCCT
1 AATCATATTCATAATGTCCCT
25070728 AATCATATTCATAATGTCCCT
1 AATCATATTCATAATGTCCCT
25070749 A
1 A
25070750 CTATGAACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.37
Consensus pattern (21 bp):
AATCATATTCATAATGTCCCT
Found at i:25070881 original size:23 final size:23
Alignment explanation
Indices: 25070851--25070904 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
25070841 AGCCTCATAA
25070851 GTCCGTGTGGAGGCAATGCACAC
1 GTCCGTGTGGAGGCAATGCACAC
*
25070874 GTCCGTGTGGAGGCAATGCTCAC
1 GTCCGTGTGGAGGCAATGCACAC
*
25070897 GCCCGTGT
1 GTCCGTGT
25070905 ACTTTAGGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (23 bp):
GTCCGTGTGGAGGCAATGCACAC
Found at i:25075389 original size:25 final size:25
Alignment explanation
Indices: 25075361--25075414 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
25075351 ACTTCCTTAG
*
25075361 CATAGTCTTGAAAGTTCTTACGCTA
1 CATAGTCTTGAAAGTTCTTACGCCA
25075386 CATAGTCTTGAAAGTTCTTACGCCA
1 CATAGTCTTGAAAGTTCTTACGCCA
25075411 CATA
1 CATA
25075415 CAAAGACTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (25 bp):
CATAGTCTTGAAAGTTCTTACGCCA
Found at i:25077863 original size:13 final size:13
Alignment explanation
Indices: 25077847--25077871 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25077837 TTAAATCAGT
25077847 TAATTAGTTTAAA
1 TAATTAGTTTAAA
25077860 TAATTAGTTTAA
1 TAATTAGTTTAA
25077872 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:25086948 original size:6 final size:6
Alignment explanation
Indices: 25086887--25086965 Score: 60
Period size: 6 Copynumber: 13.8 Consensus size: 6
25086877 TGAATTCTTC
* * *
25086887 TATTTT TTTTATT TATTCT TATGTT TA-TTT TA-TTT TA-TTT TA-TTT
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
* * *
25086932 TA-TTT TATTTT TCTTTT AATTTT TATTTT CATTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTT
25086966 CAACTTTATT
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
5 24 0.40
6 31 0.52
7 5 0.08
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:25086955 original size:12 final size:11
Alignment explanation
Indices: 25086898--25086965 Score: 77
Period size: 12 Copynumber: 6.1 Consensus size: 11
25086888 ATTTTTTTTA
*
25086898 TTTATTCTTATG
1 TTTATT-TTATT
25086910 TTTATTTTA-T
1 TTTATTTTATT
25086920 TTTATTTTA-T
1 TTTATTTTATT
25086930 TTTATTTTATT
1 TTTATTTTATT
*
25086941 TTTCTTTTAATT
1 TTTATTTT-ATT
25086953 TTTATTTTCATT
1 TTTATTTT-ATT
25086965 T
1 T
25086966 CAACTTTATT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
10 19 0.38
11 11 0.22
12 20 0.40
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:25086985 original size:5 final size:5
Alignment explanation
Indices: 25086887--25086965 Score: 81
Period size: 5 Copynumber: 15.0 Consensus size: 5
25086877 TGAATTCTTC
25086887 TATTT T-TTT TA-TT TATTCT TATGTT TATTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATT-T TAT-TT TATTT TATTT TATTT TATTT TATTT
*
25086937 TATTTT TCTTT TAATTTT TATTT TCATTT
1 TA-TTT TATTT T-A-TTT TATTT T-ATTT
25086966 CAACTTTATT
Statistics
Matches: 64, Mismatches: 2, Indels: 15
0.79 0.02 0.19
Matches are distributed among these distances:
4 8 0.12
5 34 0.53
6 17 0.27
7 5 0.08
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (5 bp):
TATTT
Found at i:25089897 original size:13 final size:13
Alignment explanation
Indices: 25089881--25089913 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
25089871 TTTAATTAAA
*
25089881 TTAGTTAATTAGT
1 TTAGATAATTAGT
25089894 TTAGATAATTAGT
1 TTAGATAATTAGT
25089907 TTA-ATAA
1 TTAGATAA
25089914 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:25092114 original size:144 final size:143
Alignment explanation
Indices: 25091853--25092138 Score: 423
Period size: 144 Copynumber: 2.0 Consensus size: 143
25091843 GTTACATAGA
* * * *
25091853 CATTTAACCTCTAAATATGTATAAGAAGTTTTCTCTTCATACGACTTGAGAAAAAAAGATCAATT
1 CATTTAACCCCTAAATATGTATAAGAAATTTTCTCCTCATACGACTTAAGAAAAAAAGATCAATT
* * *
25091918 AAAAGTTATGTCTATGTATGAAATTATAATGTATGAAATTAAAATATAAAAAAATCCATATATTA
66 AAAAGTTATATCTATGTATGAAATTATAATGTATGAAATTAAAATAT-AAAAAATCCATAAATCA
*
25091983 ACAAATCAATTAGG
130 AAAAATCAATTAGG
*
25091997 CATTTAACCCCTAGAA-ATGTATAAGAAATTTTCTCCTCATACGACTTAAGAAAAAAAGATTAAT
1 CATTTAACCCCTA-AATATGTATAAGAAATTTTCTCCTCATACGACTTAAGAAAAAAAGATCAAT
* * *
25092061 TAAAAGTTATATCTATGTATGAAATTATAATGTAT-ATAATTAGAATATCAAAAATTCATAAATC
65 TAAAAGTTATATCTATGTATGAAATTATAATGTATGA-AATTAAAATATAAAAAATCCATAAATC
25092125 AAAAAATCAATTAG
129 AAAAAATCAATTAG
25092139 TCTTTCAAGA
Statistics
Matches: 128, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
143 26 0.20
144 100 0.78
145 2 0.02
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (143 bp):
CATTTAACCCCTAAATATGTATAAGAAATTTTCTCCTCATACGACTTAAGAAAAAAAGATCAATT
AAAAGTTATATCTATGTATGAAATTATAATGTATGAAATTAAAATATAAAAAATCCATAAATCAA
AAAATCAATTAGG
Found at i:25092421 original size:91 final size:91
Alignment explanation
Indices: 25092279--25092444 Score: 235
Period size: 91 Copynumber: 1.8 Consensus size: 91
25092269 AAATTTACAC
* *
25092279 CCAATTGAGCCCTTGCAGTTAATTAAAATAATCAATTAGGCCCATTCGTTAACGAAATCCGCAGT
1 CCAATTCAGCCCTTGCAGTTAATTAAAATAATCAATTAAGCCCATTCGTTAACGAAATCCGCAGT
25092344 TGACTACATTGACTATTAAAATAAGT
66 TGACTACATTGACTATTAAAATAAGT
* * * ** **
25092370 CCAATTCAGCCCTTGCCA-TTAATTTAAATAATTAATTAATCCTTTTCGTTAACGAAATCCGTGG
1 CCAATTCAGCCCTTG-CAGTTAATTAAAATAATCAATTAAGCCCATTCGTTAACGAAATCCGCAG
25092434 TTGACTACATT
65 TTGACTACATT
25092445 TAAAATAGAT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
91 63 0.97
92 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (91 bp):
CCAATTCAGCCCTTGCAGTTAATTAAAATAATCAATTAAGCCCATTCGTTAACGAAATCCGCAGT
TGACTACATTGACTATTAAAATAAGT
Found at i:25092599 original size:18 final size:19
Alignment explanation
Indices: 25092558--25092598 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
25092548 AAAAAACTGG
25092558 AAAATATTATTAAAAATTA
1 AAAATATTATTAAAAATTA
25092577 AAAATATT-TTAAAAAATTA
1 AAAATATTATT-AAAAATTA
25092596 AAA
1 AAA
25092599 TTGATATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAATATTATTAAAAATTA
Found at i:25092765 original size:20 final size:21
Alignment explanation
Indices: 25092724--25092777 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
25092714 AAACATATTT
* *
25092724 AAAACAT-TTAAAATTTTATA
1 AAAACATATAAAAATTCTATA
25092744 AAAACATATAAAAATTCT-TA
1 AAAACATATAAAAATTCTATA
*
25092764 AAAACTTATAAAAA
1 AAAACATATAAAAA
25092778 AATCATTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 22 0.73
21 8 0.27
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAACATATAAAAATTCTATA
Found at i:25092786 original size:22 final size:20
Alignment explanation
Indices: 25092742--25092788 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
25092732 TAAAATTTTA
*
25092742 TAAAAACATATAAAAATTCT
1 TAAAAACATATAAAAAATCT
*
25092762 TAAAAACTTATAAAAAAATCAT
1 TAAAAACATAT-AAAAAATC-T
25092784 TAAAA
1 TAAAA
25092789 TATAAAAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 10 0.43
21 7 0.30
22 6 0.26
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.28
Consensus pattern (20 bp):
TAAAAACATATAAAAAATCT
Found at i:25092917 original size:35 final size:36
Alignment explanation
Indices: 25092853--25092925 Score: 89
Period size: 35 Copynumber: 2.0 Consensus size: 36
25092843 GATATACACT
25092853 TATAAAAATTATAAAAAAATCATAAAAATT-TATAAAA
1 TATAAAAA-TATAAAAAAATCATAAAAATTAT-TAAAA
*
25092890 TATAAAAA-ATATAAAAATC-TAATAAATTATTAAAA
1 TATAAAAATATAAAAAAATCATAA-AAATTATTAAAA
25092925 T
1 T
25092926 CATTTATAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
34 3 0.09
35 21 0.64
36 1 0.03
37 8 0.24
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (36 bp):
TATAAAAATATAAAAAAATCATAAAAATTATTAAAA
Found at i:25092944 original size:29 final size:28
Alignment explanation
Indices: 25092884--25093046 Score: 88
Period size: 29 Copynumber: 5.9 Consensus size: 28
25092874 ATAAAAATTT
* * *
25092884 ATAAAATATAAAAAATATA-AAAATCTA
1 ATAAAATATTAAAATTTTATAAAATCTA
*
25092911 ATAAATTATTAAAATCATTTATAAAAT-TA
1 ATAAAATATTAAAAT--TTTATAAAATCTA
* * *
25092940 ATAAAATATTTAAATTTTATAAAAACTT
1 ATAAAATATTAAAATTTTATAAAATCTA
* * *
25092968 ATAAAATTAGTAAAA-ATTATAAAAATATA
1 ATAAAA-TATTAAAATTTTAT-AAAATCTA
* **
25092997 A-AAAAT-TCTAATAAATTTATAAAAAATA
1 ATAAAATAT-TAA-AATTTTATAAAATCTA
* *
25093025 TTAAAA-ATTAAAA-ATTATAAAA
1 ATAAAATATTAAAATTTTATAAAA
25093047 AAGCTATTTA
Statistics
Matches: 106, Mismatches: 19, Indels: 23
0.72 0.13 0.16
Matches are distributed among these distances:
26 8 0.08
27 27 0.25
28 27 0.25
29 39 0.37
30 5 0.05
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.34
Consensus pattern (28 bp):
ATAAAATATTAAAATTTTATAAAATCTA
Found at i:25092971 original size:10 final size:9
Alignment explanation
Indices: 25092852--25093047 Score: 122
Period size: 9 Copynumber: 21.0 Consensus size: 9
25092842 TGATATACAC
25092852 TTATAAAAA
1 TTATAAAAA
25092861 TTATAAAAAAA
1 TTAT--AAAAA
*
25092872 TCATAAAAA
1 TTATAAAAA
25092881 TT-TATAAAA
1 TTATA-AAAA
25092890 -TATAAAAA
1 TTATAAAAA
*
25092898 ATATAAAAA
1 TTATAAAAA
*
25092907 TCTA-ATAAA
1 T-TATAAAAA
25092916 TTATTAAAATCA
1 TTA-TAAAA--A
25092928 TT-TATAAAA
1 TTATA-AAAA
25092937 TTAATAAAATA
1 TT-ATAAAA-A
**
25092948 TT-TAAATT
1 TTATAAAAA
25092956 TTATAAAAA
1 TTATAAAAA
25092965 CTTAT-AAAA
1 -TTATAAAAA
25092974 TTAGTAAAAA
1 TTA-TAAAAA
25092984 TTATAAAAA
1 TTATAAAAA
25092993 -TATAAAAAA
1 TTAT-AAAAA
*
25093002 TTCTAATAAA
1 TTATAA-AAA
25093012 TTTATAAAAA
1 -TTATAAAAA
*
25093022 ATATTAAAAA
1 TTA-TAAAAA
25093032 -T-TAAAAA
1 TTATAAAAA
25093039 TTATAAAAA
1 TTATAAAAA
25093048 AGCTATTTAA
Statistics
Matches: 150, Mismatches: 12, Indels: 50
0.71 0.06 0.24
Matches are distributed among these distances:
7 6 0.04
8 18 0.12
9 67 0.45
10 35 0.23
11 21 0.14
12 3 0.02
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:25093012 original size:28 final size:26
Alignment explanation
Indices: 25092867--25093047 Score: 114
Period size: 28 Copynumber: 6.5 Consensus size: 26
25092857 AAAATTATAA
* * * *
25092867 AAAAATCATAAAAATTTATAAAATAT
1 AAAAATTATAAAAATATAAAAAATTT
* * *
25092893 AAAAAATATAAAAATCTAATAAATTATT
1 AAAAATTATAAAAATATAA-AAAAT-TT
* *
25092921 AAAATCATTTATAAAATTAATAAAATATTT
1 AAAA--A-TTATAAAAAT-ATAAAAAATTT
** *
25092951 AAATTTTATAAAAACT-TATAAAATTAGT
1 AAAAATTATAAAAA-TATAAAAAATT--T
25092979 AAAAATTATAAAAATATAAAAAATTCT
1 AAAAATTATAAAAATATAAAAAATT-T
*
25093006 AATAAATTTATAAAAAATATTAAAAA-TT
1 AA-AAA-TTAT-AAAAATATAAAAAATTT
25093034 AAAAATTATAAAAA
1 AAAAATTATAAAAA
25093048 AGCTATTTAA
Statistics
Matches: 121, Mismatches: 21, Indels: 27
0.72 0.12 0.16
Matches are distributed among these distances:
25 5 0.04
26 26 0.21
27 19 0.16
28 33 0.27
29 5 0.04
30 19 0.16
31 11 0.09
32 3 0.02
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.34
Consensus pattern (26 bp):
AAAAATTATAAAAATATAAAAAATTT
Found at i:25093017 original size:47 final size:45
Alignment explanation
Indices: 25092869--25093048 Score: 143
Period size: 47 Copynumber: 3.8 Consensus size: 45
25092859 AATTATAAAA
* *
25092869 AAATCATAAAAAT-TTATAAAATATAAAAAATAT-AAAAA-TCTAAT
1 AAATTATAAAATTATTA-AAAAT-TAAAAAATATAAAAAATTCTAAT
* ** * *
25092913 AAATTATTAAAATCATTTATAAAATTAATAAAATAT-TTAAATTTTATAA
1 AAATTA-TAAAATTA-TTA-AAAATTAA-AAAATATAAAAAATTCTA-AT
*
25092962 AAACTTATAAAATTAGTAAAAATTATAAAAATATAAAAAATTCTAAT
1 AAA-TTATAAAATTATTAAAAATTA-AAAAATATAAAAAATTCTAAT
* *
25093009 AAATTTATAAAAAATATTAAAAATTAAAAATTATAAAAAA
1 AAA-TTAT-AAAATTATTAAAAATTAAAAAATATAAAAAA
25093049 GCTATTTAAA
Statistics
Matches: 109, Mismatches: 17, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
44 5 0.05
45 5 0.05
46 3 0.03
47 54 0.50
48 28 0.26
49 11 0.10
50 3 0.03
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.34
Consensus pattern (45 bp):
AAATTATAAAATTATTAAAAATTAAAAAATATAAAAAATTCTAAT
Found at i:25093504 original size:7 final size:7
Alignment explanation
Indices: 25093461--25093496 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
25093451 CAATTCAATT
25093461 AAATAAA
1 AAATAAA
25093468 AAATAAA
1 AAATAAA
25093475 AAATAAA
1 AAATAAA
25093482 AAATAAA
1 AAATAAA
25093489 AAATAAA
1 AAATAAA
25093496 A
1 A
25093497 TTAAAAATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAATAAA
Found at i:25093724 original size:18 final size:18
Alignment explanation
Indices: 25093674--25093734 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
25093664 TTAATGTTTT
* *
25093674 ATTTTTAATTTTTTTATG-
1 ATTTTT-ATATTTTTAAGA
25093692 ATTTTTATAAGTTTTTAAGA
1 ATTTTTAT-A-TTTTTAAGA
25093712 ATTTTTATATTTTATAA-A
1 ATTTTTATATTTT-TAAGA
25093730 ATTTT
1 ATTTT
25093735 AAATATTTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
17 2 0.05
18 16 0.43
19 11 0.30
20 8 0.22
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (18 bp):
ATTTTTATATTTTTAAGA
Found at i:25093784 original size:30 final size:26
Alignment explanation
Indices: 25093684--25093785 Score: 71
Period size: 30 Copynumber: 3.6 Consensus size: 26
25093674 ATTTTTAATT
* **
25093684 TTTTTATGATTTTTATAAGTTTTTAAGAA
1 TTTTTAT-AATTTTATAAAATTTT-A-AA
25093713 TTTTTAT-ATTTTATAAAATTTTAAA
1 TTTTTATAATTTTATAAAATTTTAAA
*
25093738 TATTTGTATTAGTTTTATAAAAATTTTCATAA
1 T-TTT-TA-TAATTTTAT-AAAATTTT-A-AA
25093770 TTTATTATAATTTTAT
1 TTT-TTATAATTTTAT
25093786 TTTTATAATA
Statistics
Matches: 60, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
25 3 0.05
26 4 0.07
27 14 0.23
28 1 0.02
29 13 0.22
30 16 0.27
31 5 0.08
32 4 0.07
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (26 bp):
TTTTTATAATTTTATAAAATTTTAAA
Found at i:25093811 original size:30 final size:30
Alignment explanation
Indices: 25093777--25093836 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
25093767 TAATTTATTA
25093777 TAATT-TTATTTTTATAATATTTACAAGTTT
1 TAATTATT-TTTTTATAATATTTACAAGTTT
* *
25093807 TAATTATTTTTTTATAATTTTTATAAGTTT
1 TAATTATTTTTTTATAATATTTACAAGTTT
25093837 ATATCAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (30 bp):
TAATTATTTTTTTATAATATTTACAAGTTT
Found at i:25093827 original size:9 final size:9
Alignment explanation
Indices: 25093684--25093911 Score: 86
Period size: 9 Copynumber: 24.8 Consensus size: 9
25093674 ATTTTTAATT
*
25093684 TTTTTATGA
1 TTTTTATAA
25093693 TTTTTATAA
1 TTTTTATAA
*
25093702 GTTTTTAAGAA
1 -TTTTT-ATAA
25093713 TTTTTAT-A
1 TTTTTATAA
25093721 -TTTTATAAA
1 TTTTTAT-AA
*
25093730 ATTTTA-AA
1 TTTTTATAA
*
25093738 TATTTGTATTAG
1 T-TTT-TA-TAA
*
25093750 TTTTATAAAAA
1 TTTT-T-ATAA
*
25093761 TTTTCATAA
1 TTTTTATAA
25093770 TTTATTATAA
1 TTT-TTATAA
25093780 --TTT-T-A
1 TTTTTATAA
25093785 TTTTTATAA
1 TTTTTATAA
* *
25093794 TATTTACAA
1 TTTTTATAA
* *
25093803 GTTTTAATTATT
1 -TTTTTA-TA-A
25093815 TTTTTATAA
1 TTTTTATAA
25093824 TTTTTATAA
1 TTTTTATAA
*
25093833 GTTTATATCAA
1 -TTTTTAT-AA
25093844 -TTTTAGT-A
1 TTTTTA-TAA
25093852 TTTTTAT--
1 TTTTTATAA
25093859 TTTTTAATAA
1 TTTTT-ATAA
*
25093869 -TTATATAA
1 TTTTTATAA
*
25093877 TAATTTATAA
1 T-TTTTATAA
25093887 TTTTTAT-A
1 TTTTTATAA
25093895 TTTTTAATAA
1 TTTTT-ATAA
25093905 TTTTTAT
1 TTTTTAT
25093912 GAGAAAATAT
Statistics
Matches: 165, Mismatches: 25, Indels: 58
0.67 0.10 0.23
Matches are distributed among these distances:
5 1 0.01
6 1 0.01
7 16 0.10
8 19 0.12
9 57 0.35
10 48 0.29
11 20 0.12
12 3 0.02
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.61
Consensus pattern (9 bp):
TTTTTATAA
Found at i:25094231 original size:20 final size:20
Alignment explanation
Indices: 25094208--25094260 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
25094198 TGAAATAATT
*
25094208 AAAATTCCTTAAAAATATAA
1 AAAATTCCATAAAAATATAA
*
25094228 AAAATT-CATGAAAATATAA
1 AAAATTCCATAAAAATATAA
* *
25094247 AAAAATCCCTAAAA
1 AAAATTCCATAAAA
25094261 TTTTTTAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.62, C:0.11, G:0.02, T:0.25
Consensus pattern (20 bp):
AAAATTCCATAAAAATATAA
Found at i:25094269 original size:22 final size:22
Alignment explanation
Indices: 25094225--25094293 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
25094215 CTTAAAAATA
25094225 TAAAAAAT-TCATGAAAA-TA--
1 TAAAAAATATCAT-AAAATTATT
* *
25094244 TAAAAAA-ATCCCTAAAATTTTT
1 TAAAAAATAT-CATAAAATTATT
25094266 TAAAAAATATCATAAAATTATT
1 TAAAAAATATCATAAAATTATT
25094288 TAAAAA
1 TAAAAA
25094294 TTTCAAGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
19 12 0.30
20 3 0.08
22 23 0.57
23 2 0.05
ACGTcount: A:0.59, C:0.07, G:0.01, T:0.32
Consensus pattern (22 bp):
TAAAAAATATCATAAAATTATT
Found at i:25094481 original size:21 final size:21
Alignment explanation
Indices: 25094457--25094505 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
25094447 TTTAAAATAA
*
25094457 TTATTTTGGTTTTTTATGATT
1 TTATTTTAGTTTTTTATGATT
* *
25094478 TTATTTAAGTTTTTTTTGATT
1 TTATTTTAGTTTTTTATGATT
25094499 TT-TTTTA
1 TTATTTTA
25094506 AATTTTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.16, C:0.00, G:0.10, T:0.73
Consensus pattern (21 bp):
TTATTTTAGTTTTTTATGATT
Found at i:25094506 original size:21 final size:21
Alignment explanation
Indices: 25094465--25094511 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
25094455 AATTATTTTG
25094465 GTTTTTTATGATTTTATTTAA
1 GTTTTTTATGATTTTATTTAA
* *
25094486 GTTTTTTTTGATTTTTTTTAA
1 GTTTTTTATGATTTTATTTAA
*
25094507 ATTTT
1 GTTTT
25094512 AAATTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (21 bp):
GTTTTTTATGATTTTATTTAA
Found at i:25109615 original size:21 final size:21
Alignment explanation
Indices: 25109586--25109626 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
25109576 TGCTGGACAG
*
25109586 GAGCCGGAATGGGAGTGTTTA
1 GAGCCGGAATGAGAGTGTTTA
*
25109607 GAGCTGGAATGAGAGTGTTT
1 GAGCCGGAATGAGAGTGTTT
25109627 GGTTGCTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.41, T:0.27
Consensus pattern (21 bp):
GAGCCGGAATGAGAGTGTTTA
Found at i:25112588 original size:13 final size:13
Alignment explanation
Indices: 25112572--25112606 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
25112562 ACCAAAATTT
25112572 TCAAAAGCACTTC
1 TCAAAAGCACTTC
*
25112585 TCAAAAGCACTTT
1 TCAAAAGCACTTC
25112598 TCAAAAGCA
1 TCAAAAGCA
25112607 TTGCCAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.43, C:0.26, G:0.09, T:0.23
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:25123942 original size:19 final size:20
Alignment explanation
Indices: 25123906--25123944 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
25123896 TATATAAAGA
25123906 CTTTTATATAATTTGTGGTT
1 CTTTTATATAATTTGTGGTT
25123926 CTTTT-TAT-ATTTAGTGGTT
1 CTTTTATATAATTT-GTGGTT
25123945 ATGGACTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 9 0.50
20 5 0.28
ACGTcount: A:0.18, C:0.05, G:0.15, T:0.62
Consensus pattern (20 bp):
CTTTTATATAATTTGTGGTT
Found at i:25132957 original size:32 final size:32
Alignment explanation
Indices: 25132916--25132976 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
25132906 CTAATGGTCT
25132916 AATTTAAAATTTCATAACAACTGGACACCCTC
1 AATTTAAAATTTCATAACAACTGGACACCCTC
*
25132948 AATTTAAAATTTCATAACAATTGGACACC
1 AATTTAAAATTTCATAACAACTGGACACC
25132977 TTTAGTATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.30
Consensus pattern (32 bp):
AATTTAAAATTTCATAACAACTGGACACCCTC
Found at i:25134904 original size:6 final size:6
Alignment explanation
Indices: 25134886--25135034 Score: 117
Period size: 6 Copynumber: 24.3 Consensus size: 6
25134876 AAGAAACATT
25134886 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
25134934 ATCAAA ATCAAA ATTAG- GTGACAGA ATTAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * * *
25134985 ACCA-A ATCAAA ATCAGA ATCAGC ATCAGGTA A-CAGA ATCAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
25135033 AT
1 AT
25135035 GTGAATGCAA
Statistics
Matches: 115, Mismatches: 17, Indels: 22
0.75 0.11 0.14
Matches are distributed among these distances:
5 8 0.07
6 95 0.83
7 7 0.06
8 5 0.04
ACGTcount: A:0.50, C:0.16, G:0.15, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:25134999 original size:31 final size:31
Alignment explanation
Indices: 25134895--25135034 Score: 142
Period size: 31 Copynumber: 4.5 Consensus size: 31
25134885 TATCAGAACT
* *
25134895 AGAATCAGAATCAGAATCAGAATCA-G-AATC
1 AGAATCAAAATCAGAATCAGCATCAGGTAA-C
* * ** * *
25134925 AGAATCAGAATCAAAATCAAAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGCATCAGGTAAC
* * *
25134956 AGAATTAGAATCAGAATCAGTATCAGGTAACC
1 AGAATCAAAATCAGAATCAGCATCAGGTAA-C
25134988 A-AATCAAAATCAGAATCAGCATCAGGTAAC
1 AGAATCAAAATCAGAATCAGCATCAGGTAAC
25135018 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
25135035 GTGAATGCAA
Statistics
Matches: 93, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
30 24 0.26
31 66 0.71
32 3 0.03
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGCATCAGGTAAC
Found at i:25135190 original size:27 final size:26
Alignment explanation
Indices: 25135154--25135239 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 26
25135144 AGCATGGCTG
*
25135154 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
25135180 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
25135207 CCAGAACAAATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
*
25135234 CTAGAA
1 CCAGAA
25135240 TTAGATAATG
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 11 0.21
27 42 0.79
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:25135343 original size:32 final size:31
Alignment explanation
Indices: 25135274--25135343 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 31
25135264 AATAGAATAG
* *
25135274 TGGCACAAAGCCATCAATAACTGTAATAACT
1 TGGCACAAAGCCATCAATAACGGTAATAAAT
* * *
25135305 TCGGCACATAGCCATCAGTGACGGTAATATAAT
1 T-GGCACAAAGCCATCAATAACGGTAATA-AAT
25135338 TGGCAC
1 TGGCAC
25135344 CCAGCCTTCG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
31 1 0.03
32 28 0.88
33 3 0.09
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.23
Consensus pattern (31 bp):
TGGCACAAAGCCATCAATAACGGTAATAAAT
Found at i:25135451 original size:22 final size:22
Alignment explanation
Indices: 25135419--25135476 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
25135409 TAAATACGTT
*
25135419 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * *
25135441 TGGCACAAAGCCATATTTAAGT
1 TGGCACAAAGCCATAGTCAAGA
*
25135463 TGGCACAAATCCAT
1 TGGCACAAAGCCAT
25135477 TGATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:25135854 original size:27 final size:27
Alignment explanation
Indices: 25135824--25136010 Score: 261
Period size: 27 Copynumber: 7.0 Consensus size: 27
25135814 AGGGAAAAAT
* *
25135824 GGTAATTTTACCCTA-AGAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
25135851 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
25135878 AGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
25135905 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
25135932 GGTAATTCTACCTTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
25135958 AGTAATTCTACCCTAAAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
25135985 GATAATTCTACCTTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
25136011 TAGTAATTTT
Statistics
Matches: 142, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 23 0.16
27 117 0.82
28 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:25136033 original size:27 final size:27
Alignment explanation
Indices: 25136001--25136127 Score: 116
Period size: 27 Copynumber: 4.7 Consensus size: 27
25135991 TCTACCTTAC
*
25136001 AGGGGTATTTTAGTAATTTTACAGGTCG
1 AGGGGTATTTTAGTAATTTTACA-ATCG
* * *
25136029 A-GGGTATTTCAGTAATTTCACAAAT-T
1 AGGGGTATTTTAGTAATTTTAC-AATCG
* * *
25136055 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTAGTAATTTTACAATCG
* *
25136082 AGGGGTATTTTGGTAATTTTTCTAATCG
1 AGGGGTATTTTAGTAATTTTAC-AATCG
*
25136110 A-GGGTATTTCAGTAATTT
1 AGGGGTATTTTAGTAATTT
25136128 GGTAAACTAA
Statistics
Matches: 82, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
26 3 0.04
27 73 0.89
28 6 0.07
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTAGTAATTTTACAATCG
Found at i:25155843 original size:20 final size:20
Alignment explanation
Indices: 25155818--25155876 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
25155808 TAAATATGGT
25155818 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
25155838 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
25155858 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
25155877 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:25155957 original size:23 final size:24
Alignment explanation
Indices: 25155927--25156021 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
25155917 GAGGAAGTGA
25155927 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
25155950 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
25155974 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
25155998 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
25156022 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:25155995 original size:47 final size:49
Alignment explanation
Indices: 25155928--25156021 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
25155918 AGGAAGTGAA
*
25155928 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
25155975 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
25156022 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:25156264 original size:38 final size:38
Alignment explanation
Indices: 25156213--25156306 Score: 152
Period size: 38 Copynumber: 2.4 Consensus size: 38
25156203 CGTTTACAGT
*
25156213 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACACGA
*
25156251 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACACGA
*
25156289 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
25156307 GCATGATTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 39 0.75
39 13 0.25
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.21
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACACGA
Found at i:25164113 original size:20 final size:20
Alignment explanation
Indices: 25164088--25164146 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
25164078 TAAATATGGT
25164088 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
25164108 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
25164128 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
25164147 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:25164227 original size:23 final size:24
Alignment explanation
Indices: 25164197--25164291 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
25164187 GAGGAAGTGA
25164197 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
25164220 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
25164244 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
25164268 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
25164292 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:25164265 original size:47 final size:49
Alignment explanation
Indices: 25164198--25164291 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
25164188 AGGAAGTGAA
*
25164198 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
25164245 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
25164292 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:25164534 original size:38 final size:38
Alignment explanation
Indices: 25164483--25164576 Score: 161
Period size: 38 Copynumber: 2.4 Consensus size: 38
25164473 CGTTTACAGT
25164483 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
25164521 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
25164559 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
25164577 GCATGATTGA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
38 40 0.75
39 13 0.25
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:25168967 original size:11 final size:11
Alignment explanation
Indices: 25168938--25168971 Score: 50
Period size: 11 Copynumber: 2.9 Consensus size: 11
25168928 TATGGTTTAG
25168938 TTTAAGAGTTTT
1 TTTAAGA-TTTT
25168950 TTGTAAGATTTT
1 TT-TAAGATTTT
25168962 TTTAAGATTT
1 TTTAAGATTT
25168972 ATATTAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 8 0.38
12 8 0.38
13 5 0.24
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (11 bp):
TTTAAGATTTT
Found at i:25172373 original size:40 final size:40
Alignment explanation
Indices: 25172317--25172484 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
25172307 CAATTGAATG
* *
25172317 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
25172358 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
25172397 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
25172437 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
25172477 ATATCCGG
1 ATATCCGG
25172485 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:25172450 original size:80 final size:79
Alignment explanation
Indices: 25172317--25172484 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
25172307 CAATTGAATG
* *
25172317 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
25172382 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
25172397 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
25172461 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
25172477 ATATCCGG
1 ATATCCGG
25172485 TTGTATTCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:25180373 original size:40 final size:40
Alignment explanation
Indices: 25180317--25180484 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
25180307 CTATTGAATG
* *
25180317 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
25180358 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
25180397 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
25180437 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
25180477 ATATCCGG
1 ATATCCGG
25180485 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:25180450 original size:80 final size:79
Alignment explanation
Indices: 25180317--25180484 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
25180307 CTATTGAATG
* *
25180317 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
25180382 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
25180397 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
25180461 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
25180477 ATATCCGG
1 ATATCCGG
25180485 TTGTATTCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:25192574 original size:33 final size:32
Alignment explanation
Indices: 25192537--25192604 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
25192527 GAAAGGTTAG
25192537 GTATACTTTGTATATACCA-TATGAAAAGGAAAT
1 GTATACTTTGTATATACCAGT-TGAAAA-GAAAT
* * *
25192570 GTATACTTTTTGTGTACCAGTTGAAAAGAAAT
1 GTATACTTTGTATATACCAGTTGAAAAGAAAT
25192602 GTA
1 GTA
25192605 CACCTCAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 8 0.26
33 22 0.71
34 1 0.03
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (32 bp):
GTATACTTTGTATATACCAGTTGAAAAGAAAT
Found at i:25198626 original size:12 final size:13
Alignment explanation
Indices: 25198605--25198632 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
25198595 AATATTGCAT
25198605 AAAAATTTTTATC
1 AAAAATTTTTATC
25198618 AAAAATTTTTATC
1 AAAAATTTTTATC
25198631 AA
1 AA
25198633 TTATGTGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (13 bp):
AAAAATTTTTATC
Found at i:25199107 original size:20 final size:21
Alignment explanation
Indices: 25199082--25199123 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
25199072 AATATGTTGT
*
25199082 AAAATGAAAG-TTTTTGATAG
1 AAAATGAAAGATTATTGATAG
25199102 AAAATGAAAGATTATTGATAG
1 AAAATGAAAGATTATTGATAG
25199123 A
1 A
25199124 TAAACCACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (21 bp):
AAAATGAAAGATTATTGATAG
Found at i:25199845 original size:33 final size:32
Alignment explanation
Indices: 25199808--25199909 Score: 105
Period size: 33 Copynumber: 3.1 Consensus size: 32
25199798 TACCGAAATG
* *
25199808 GTACAATTTGAAAAGGTTATGTACACCTTGTGT
1 GTAC-ATTTGAAAAGGTTATGTATACTTTGTGT
* * *
25199841 GTACACTTGGAAAGGTTAGGTATACTTTGTGT
1 GTACATTTGAAAAGGTTATGTATACTTTGTGT
* * **
25199873 ATACCATATGAAAAGGAAATGTATACTTTGTGT
1 GTA-CATTTGAAAAGGTTATGTATACTTTGTGT
25199906 GTAC
1 GTAC
25199910 CACTTGGAAA
Statistics
Matches: 55, Mismatches: 13, Indels: 3
0.77 0.18 0.04
Matches are distributed among these distances:
32 26 0.47
33 29 0.53
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (32 bp):
GTACATTTGAAAAGGTTATGTATACTTTGTGT
Found at i:25199855 original size:32 final size:32
Alignment explanation
Indices: 25199819--25199920 Score: 107
Period size: 33 Copynumber: 3.1 Consensus size: 32
25199809 TACAATTTGA
* *
25199819 AAAGGTTATGTACACCTTGTGTGTACACTTGG
1 AAAGGTTATGTATACTTTGTGTGTACACTTGG
* * *
25199851 AAAGGTTAGGTATACTTTGTGTATAC-CATATGA
1 AAAGGTTATGTATACTTTGTGTGTACAC-T-TGG
**
25199884 AAAGGAAATGTATACTTTGTGTGTACCACTTGG
1 AAAGGTTATGTATACTTTGTGTGTA-CACTTGG
25199917 AAAG
1 AAAG
25199921 AAATGTACAC
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
31 1 0.02
32 23 0.41
33 29 0.52
34 2 0.04
35 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (32 bp):
AAAGGTTATGTATACTTTGTGTGTACACTTGG
Found at i:25199911 original size:33 final size:32
Alignment explanation
Indices: 25199860--25199927 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 32
25199850 GAAAGGTTAG
25199860 GTATACTTTGTGTATACCA-TATGAAAAGGAAAT
1 GTATACTTTGTGTATACCACT-TGAAAA-GAAAT
* *
25199893 GTATACTTTGTGTGTACCACTTGGAAAGAAAT
1 GTATACTTTGTGTATACCACTTGAAAAGAAAT
25199925 GTA
1 GTA
25199928 CACCTCAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 8 0.25
33 23 0.72
34 1 0.03
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (32 bp):
GTATACTTTGTGTATACCACTTGAAAAGAAAT
Found at i:25201006 original size:30 final size:30
Alignment explanation
Indices: 25200970--25201074 Score: 165
Period size: 30 Copynumber: 3.5 Consensus size: 30
25200960 CAGAATTCCA
25200970 CACGGGCTGGCCACACGGCCATAGGATCCC
1 CACGGGCTGGCCACACGGCCATAGGATCCC
* *
25201000 CACGGGCTGGCCCCACGGCCATAGGATCTC
1 CACGGGCTGGCCACACGGCCATAGGATCCC
* * *
25201030 CACAGGCTGGCCACACGTCCAAAGGATCCC
1 CACGGGCTGGCCACACGGCCATAGGATCCC
25201060 CACGGGCTGGCCACA
1 CACGGGCTGGCCACA
25201075 TAGGTGTGTG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.21, C:0.40, G:0.29, T:0.10
Consensus pattern (30 bp):
CACGGGCTGGCCACACGGCCATAGGATCCC
Found at i:25202038 original size:41 final size:41
Alignment explanation
Indices: 25201952--25202040 Score: 99
Period size: 41 Copynumber: 2.2 Consensus size: 41
25201942 CTTTGATCCG
* *
25201952 GTGTATTAAATTAGGCCTTGAGCCCAGCATACTTCGAGCCT
1 GTGTATTAAATTAGGCCTTGAGCCCAGCAGACTTCGAGCCA
* * * * *
25201993 GTGTATTACATCT-GGCCTTGGGCCTAGCAGACTTCGTGTCA
1 GTGTATTAAAT-TAGGCCTTGAGCCCAGCAGACTTCGAGCCA
25202034 GTGTATT
1 GTGTATT
25202041 GTGTAATATC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 39 0.98
42 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (41 bp):
GTGTATTAAATTAGGCCTTGAGCCCAGCAGACTTCGAGCCA
Found at i:25203381 original size:46 final size:46
Alignment explanation
Indices: 25203328--25203501 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
25203318 TTTGGGCATT
25203328 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTC
*
25203374 CGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G--TC
* * * * *
25203421 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTC
* *
25203467 CGAGCTCGTTGAGTTCAGTCCGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25203502 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 1 0.01
45 1 0.01
46 60 0.55
47 27 0.25
48 1 0.01
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTC
Found at i:25203481 original size:93 final size:93
Alignment explanation
Indices: 25203322--25203493 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
25203312 AGGATATTTG
* * * * *
25203322 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAG
*
25203387 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTCAGTCCGAGTTCGAGAGATGTAACTA
* *
25203415 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAG
25203480 TTCAGTCCGAGTTC
66 TTCAGTCCGAGTTC
25203494 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAG
TTCAGTCCGAGTTCGAGAGATGTAACTA
Found at i:25209769 original size:40 final size:40
Alignment explanation
Indices: 25209682--25209895 Score: 285
Period size: 40 Copynumber: 5.4 Consensus size: 40
25209672 AAGCCAAGTA
* * *
25209682 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
25209720 CCTTCGGGACATAGCCCGGATATAATAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
25209760 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
25209800 CCTTC-GGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
25209839 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
25209879 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
25209896 ATGTTATCAT
Statistics
Matches: 158, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
38 12 0.08
39 55 0.35
40 91 0.58
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:25209814 original size:79 final size:79
Alignment explanation
Indices: 25209682--25209895 Score: 283
Period size: 79 Copynumber: 2.7 Consensus size: 79
25209672 AAGCCAAGTA
* * * *
25209682 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
*
25209745 TAACTCGCACCAATG
65 TAACTCGCACAAATG
*
25209760 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
*
25209824 TAGCTCGCACAAATG
65 TAACTCGCACAAATG
* *
25209839 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCC
25209896 ATGTTATCAT
Statistics
Matches: 121, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
78 14 0.12
79 87 0.72
80 20 0.17
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
AACTCGCACAAATG
Found at i:25212133 original size:46 final size:44
Alignment explanation
Indices: 25212080--25212253 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 44
25212070 TATTTGGGCA
*
25212080 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-GC-AACG
** * * * *
25212126 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-AGAGTGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-TGGAGC-A-ACG
* * *
25212172 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-GC-AACG
* *
25212218 CCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25212254 GTGGGTTACA
Statistics
Matches: 106, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
45 18 0.17
46 85 0.80
47 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGCAACG
Found at i:25212233 original size:92 final size:91
Alignment explanation
Indices: 25212076--25212246 Score: 261
Period size: 92 Copynumber: 1.9 Consensus size: 91
25212066 AGGATATTTG
* ***
25212076 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGACGCAAACACCCGAACTCGTTGAG
25212141 TTGAGTCCGAGTTCAAGAGTGTAACTA
66 TTGAGT-CGAGTTCAAGAGTGTAACTA
* * * *
25212168 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGACGCAAACACCCGAACTCGTTGAG
25212233 TTGAGTCGAGTTCA
66 TTGAGTCGAGTTCA
25212247 CTTATGGGTG
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
91 8 0.11
92 63 0.89
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (91 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGACGCAAACACCCGAACTCGTTGAG
TTGAGTCGAGTTCAAGAGTGTAACTA
Found at i:25214622 original size:43 final size:42
Alignment explanation
Indices: 25214532--25214623 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
25214522 ATGGTATAAG
* * **
25214532 ACACGGCCGTGTGTCTTAAAATAGTTTGTCACACAATCTAGC
1 ACACGGCCGTGTGACTCAAAATAGAATGTCACACAATCTAGC
* ** *
25214574 ACACGGCCGTGTGACTCAATATAGAATGTACACACGGTCTGGC
1 ACACGGCCGTGTGACTCAAAATAGAATGT-CACACAATCTAGC
25214617 ACACGGC
1 ACACGGC
25214624 TTGCGACACG
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 24 0.59
43 17 0.41
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (42 bp):
ACACGGCCGTGTGACTCAAAATAGAATGTCACACAATCTAGC
Found at i:25216333 original size:18 final size:18
Alignment explanation
Indices: 25216310--25216345 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
25216300 AAATTTGATG
25216310 TTGCCATAGAAGGGAAAA
1 TTGCCATAGAAGGGAAAA
25216328 TTGCCATAGAAGGGAAAA
1 TTGCCATAGAAGGGAAAA
25216346 GTGATCAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.28, T:0.17
Consensus pattern (18 bp):
TTGCCATAGAAGGGAAAA
Found at i:25225269 original size:40 final size:40
Alignment explanation
Indices: 25225161--25225370 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
25225151 CGGGATTTAA
* * * * *
25225161 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
25225201 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
25225241 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
25225281 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
25225321 CCGGATATATCAACTCGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
25225361 CCGGATATAT
1 CCGGATATAT
25225371 TTCCAATGTT
Statistics
Matches: 152, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 151 0.99
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:25232796 original size:30 final size:30
Alignment explanation
Indices: 25232741--25232900 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
25232731 ATAGTGAATC
25232741 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
25232770 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
25232800 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
25232829 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
25232857 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
25232887 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25232901 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:25232833 original size:59 final size:57
Alignment explanation
Indices: 25232741--25232900 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
25232731 ATAGTGAATC
*
25232741 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
25232800 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
25232857 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
25232901 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:25235333 original size:49 final size:49
Alignment explanation
Indices: 25235261--25235437 Score: 232
Period size: 49 Copynumber: 3.6 Consensus size: 49
25235251 TGTGATGTCA
*
25235261 CATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCG
* * * * * *
25235310 CATGTGTAGTACCAAATGCAGGCTACTATGTGTACCCGAAAACTGTGAT-G
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCG
*
25235360 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGG-TTATTGGTCG
1 -CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GGATAATTGGTCG
25235410 CATGTGTAGTACTAAGTGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
25235438 TGCGTACCAG
Statistics
Matches: 109, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
49 67 0.61
50 4 0.04
51 37 0.34
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCG
Found at i:25235433 original size:100 final size:101
Alignment explanation
Indices: 25235251--25235445 Score: 313
Period size: 100 Copynumber: 1.9 Consensus size: 101
25235241 AATGAACTAT
*
25235251 TGTGATGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTG
1 TGTGATG-CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTG
*
25235316 TAGTACCAAATGCAGGCTACTATGTGTACCCGAAAAC
65 TAGTACCAAATGCAGGCTACTATGCGTACCCGAAAAC
*
25235353 TGTGATG-ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGG-TTATTGGTCGCATGTG
1 TGTGATGCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GGATAATTGGTCGCATGTG
* *
25235416 TAGTACTAAGTGCAGGCTACTATGCGTACC
65 TAGTACCAAATGCAGGCTACTATGCGTACC
25235446 AGATAGCTTT
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
100 78 0.90
101 2 0.02
102 7 0.08
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (101 bp):
TGTGATGCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGT
AGTACCAAATGCAGGCTACTATGCGTACCCGAAAAC
Found at i:25243173 original size:28 final size:28
Alignment explanation
Indices: 25243107--25243206 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
25243097 TAGTGAATCT
* *
25243107 GCACACTTAGTGCTATATACGTTC-AGCTC
1 GCACACTTAGTGCTATATA--ATCAAACTC
25243136 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
* * * *
25243164 GCACACTTAGTGCTGTACAATTTTAAACCC
1 GCACACTTAGTGCTATATAA--TCAAACTC
25243194 GCACACTTAGTGC
1 GCACACTTAGTGC
25243207 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 22 0.35
29 19 0.31
30 19 0.31
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:25246303 original size:40 final size:39
Alignment explanation
Indices: 25246258--25246465 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
25246248 CGGAATACAA
*
25246258 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
25246298 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
25246338 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
25246378 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
25246418 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
25246458 CCGGATAT
1 CCGGATAT
25246466 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:25246398 original size:80 final size:81
Alignment explanation
Indices: 25246258--25246463 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
25246248 CGGAATACAA
* * *
25246258 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
25246322 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
25246338 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
25246401 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
25246418 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
25246464 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:25254225 original size:29 final size:29
Alignment explanation
Indices: 25254193--25254265 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
25254183 CTTCGAGCTC
*
25254193 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
25254222 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
25254251 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
25254266 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:25257495 original size:40 final size:40
Alignment explanation
Indices: 25257436--25257577 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
25257426 AAATTGAATG
* * *
25257436 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
25257476 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
25257516 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
25257556 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
25257578 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:25257578 original size:40 final size:39
Alignment explanation
Indices: 25257475--25257603 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
25257465 TGCTGGAAAT
* * *
25257475 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
25257515 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
25257555 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
25257595 TATATCCGG
1 TATATCCGG
25257604 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:25265520 original size:40 final size:40
Alignment explanation
Indices: 25265461--25265602 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
25265451 AAATTGAATG
* * *
25265461 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
25265501 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
25265541 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
25265581 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
25265603 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:25265603 original size:40 final size:39
Alignment explanation
Indices: 25265500--25265628 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
25265490 TGCTGGAAAT
* * *
25265500 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
25265540 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
25265580 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
25265620 TATATCCGG
1 TATATCCGG
25265629 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:25269079 original size:40 final size:40
Alignment explanation
Indices: 25268952--25269081 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
25268942 ATGCTGGAAA
* *
25268952 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
25268992 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
25269032 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
25269072 TTATATCCGG
1 TTATATCCGG
25269082 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:25269080 original size:80 final size:79
Alignment explanation
Indices: 25268915--25269081 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
25268905 CAATTGAATG
* *
25268915 ATATCCGGGCTAAGTCCCGAAGACATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
25268980 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * ** *
25268994 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
25269058 -ATTCGTGC-ACGTGGTT
64 AATT-GTGCTA-GTGGCT
25269074 ATATCCGG
1 ATATCCGG
25269082 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 29 0.39
80 45 0.61
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:25277052 original size:124 final size:123
Alignment explanation
Indices: 25276831--25277054 Score: 297
Period size: 124 Copynumber: 1.8 Consensus size: 123
25276821 GAATTATGTG
* * * * * * * *
25276831 AAATGAAGTATGGATGTGTATTGATTATTGATTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AAATGAAATATGAATGTCTAATGATTATTGATCATGTGTGCATGAGCAATTGAATGATACCCGGG
* * * **
25276896 CTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTACGTTTGAGCCTTAGTAATGA
66 CTAAATCCCGAAGACGATTATGCTGGAAATTATATTTACGTTTGAGCCTTAGTAATGA
*
25276954 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGAT-CATGTGTGCATGAGCAATTGAATGATACCCGG
25277019 GCTAAATCCCGAAGACG-TTATTGCTGGAAATTATAT
65 GCTAAATCCCGAAGACGATTA-TGCTGGAAATTATAT
25277055 CCAAGTTAAG
Statistics
Matches: 85, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
123 31 0.36
124 54 0.64
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (123 bp):
AAATGAAATATGAATGTCTAATGATTATTGATCATGTGTGCATGAGCAATTGAATGATACCCGGG
CTAAATCCCGAAGACGATTATGCTGGAAATTATATTTACGTTTGAGCCTTAGTAATGA
Found at i:25277176 original size:40 final size:40
Alignment explanation
Indices: 25277061--25277178 Score: 150
Period size: 40 Copynumber: 3.0 Consensus size: 40
25277051 ATATCCAAGT
* * *
25277061 TAAGACCCGAAGGCAATT-GTGCTAGTGGCTACATCCGGGC
1 TAAGACCCGAAGGC-ATTCGTGCGAGTGGTTATATCCGGGC
** *
25277101 TAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGC
1 TAAGACCCGAAGGCATTCGTGCGAGTGGTTATATCCGGGC
25277141 TAAGACCCGAAGGCATTCGTGC-ACGTGGTTATATCCGG
1 TAAGACCCGAAGGCATTCGTGCGA-GTGGTTATATCCGG
25277179 TTGTATTCTG
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 4 0.06
40 63 0.94
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTCGTGCGAGTGGTTATATCCGGGC
Found at i:25279799 original size:933 final size:933
Alignment explanation
Indices: 25277993--25280424 Score: 4684
Period size: 933 Copynumber: 2.6 Consensus size: 933
25277983 TAAGCTATGT
25277993 AAATGAACCTTAATGAGTCTATTTTCATATGGAAGAAACGAAATGGTCGTAGGAGTTACATGTTA
1 AAATGAACCTTAATGAGTCTATTTTCATATGGAAGAAACGAAATGGTCGTAGGAGTTACATGTTA
*
25278058 AGAGATATTAAAGCTATTGTGAGACAGGGCCAGAACGGTTTCTGGGTCCCCTGTCGTAACTTTAA
66 AGAGATATTAAAGCTATTGTGAGACAGGGCCAGAACGGTTTCTGGGTCCCCTGTCGCAACTTTAA
25278123 AAATTTACTATAAATTATCCAGAAAGAATTAGGAGTCATGCCTTATATTTACAGATTCCATTTTG
131 AAATTTACTATAAATTATCCAGAAAGAATTAGGAGTCATGCCTTATATTTACAGATTCCATTTTG
25278188 AGTCTAGTTTCATTAGAAACAAACGGAACCAGTATTAAAGCCCTGTACAGTGAGATATTCAAGTT
196 AGTCTAGTTTCATTAGAAACAAACGGAACCAGTATTAAAGCCCTGTACAGTGAGATATTCAAGTT
25278253 GTAATGCGCGAAGGTCAGAGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGTAC
261 GTAATGCGCGAAGGTCAGAGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGTAC
*
25278318 CAATTGGCCTGACCAAAAATTCTAGAAATAAATCCATGGATGGATATATGAGTCTAAATTCAGGG
326 CAATTGGCCCGACCAAAAATTCTAGAAATAAATCCATGGATGGATATATGAGTCTAAATTCAGGG
25278383 AAAATTTATGAAACCAGTTTCTGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGACG
391 AAAATTTATGAAACCAGTTTCTGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGACG
25278448 TAGTTTTCCAGCCCGACTGGAAATGTCAAATTGGTGGGCAAAATATGTGGACTTGACTTATTAAC
456 TAGTTTTCCAGCCCGACTGGAAATGTCAAATTGGTGGGCAAAATATGTGGACTTGACTTATTAAC
25278513 CCCTCGTGTCCGACACCGGCAATGGTCTCGGGTTCTGGGTGTTACAATTTTATTGGTATCAGAGC
521 CCCTCGTGTCCGACACCGGCAATGGTCTCGGGTTCTGGGTGTTACAATTTTATTGGTATCAGAGC
*
25278578 CACGTTTTAGTCGATTCTAGGACTACCGTGATGTGTTTGGGGTCTAGCTATACATGCCATTAAAT
586 CACGGTTTAGTCGATTCTAGGACTACCGTGATGTGTTTGGGGTCTAGCTATACATGCCATTAAAT
25278643 GATGAATCGATAGTGTGGTGATTTCTGACAATTTGACTTTGTGTTTGTTTATAGTAATGGATCCC
651 GATGAATCGATAGTGTGGTGATTTCTGACAATTTGACTTTGTGTTTGTTTATAGTAATGGATCCC
25278708 GATCCCAACCGAGCGATAGCTGATGATGTGGAGAGTGTGGCGCCTGCTCCCGCGCAAGGGACAGC
716 GATCCCAACCGAGCGATAGCTGATGATGTGGAGAGTGTGGCGCCTGCTCCCGCGCAAGGGACAGC
*
25278773 GCCGGCGGACTCTCAACCTATGGCCAGCAATCCGAATGATTAGGCTAGGCAAGCCTTTTATAGTG
781 GCCGGCGGACTCTCAACCTATGGCCAGCAATCCGAATGATGAGGCTAGGCAAGCCTTTTATAGTG
25278838 TGATGAACGAATGGTTTAACCAATACATTCGAACTAACACGGCTGTTCCACAACCTCCATTCCCG
846 TGATGAACGAATGGTTTAACCAATACATTCGAACTAACACGGCTGTTCCACAACCTCCATTCCCG
25278903 ACAAATGCAACCCCCGCACCTAC
911 ACAAATGCAACCCCCGCACCTAC
25278926 AAATGAACCTTAATGAGTCTATTTTCATATGGAAGAAACGAAATGGTCGTAGGAGTTACATGTTA
1 AAATGAACCTTAATGAGTCTATTTTCATATGGAAGAAACGAAATGGTCGTAGGAGTTACATGTTA
*
25278991 AGAGATATTAAAGCTATTGTGAGACAGGGCGAGAACGGTTTCTGGGTCCCCTGTCGCAACTTTAA
66 AGAGATATTAAAGCTATTGTGAGACAGGGCCAGAACGGTTTCTGGGTCCCCTGTCGCAACTTTAA
25279056 AAATTTACTATAAATTATCCAGAAAGAATTAGGAGTCATGCCTTATATTTACAGATTCCATTTTG
131 AAATTTACTATAAATTATCCAGAAAGAATTAGGAGTCATGCCTTATATTTACAGATTCCATTTTG
25279121 AGTCTAGTTTCATTAGAAACAAACGGAACCAGTATTAAAGCCCTGTACAGTGAGATATTCAAGTT
196 AGTCTAGTTTCATTAGAAACAAACGGAACCAGTATTAAAGCCCTGTACAGTGAGATATTCAAGTT
*
25279186 GTAATGCGCGAAGGTCAGAGCAGTTGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGTAC
261 GTAATGCGCGAAGGTCAGAGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGTAC
25279251 CAATTGGCCCGACCAAAAATTCTAGAAATAAATCCATGGATGGATATATGAGTCTAAATTCAGGG
326 CAATTGGCCCGACCAAAAATTCTAGAAATAAATCCATGGATGGATATATGAGTCTAAATTCAGGG
25279316 AAAATTTATGAAACCAGTTTCTGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGACG
391 AAAATTTATGAAACCAGTTTCTGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGACG
25279381 TAGTTTTCCAGCCCGACTGGAAATGTCAAATTGGTGGGCAAAATATGTGGACTTGACTTATTAAC
456 TAGTTTTCCAGCCCGACTGGAAATGTCAAATTGGTGGGCAAAATATGTGGACTTGACTTATTAAC
25279446 CCCTCGTGTCCGACACCGGCAATGGTCTCGGGTTCTGGGTGTTACAATTTTATTGGTATCAGAGC
521 CCCTCGTGTCCGACACCGGCAATGGTCTCGGGTTCTGGGTGTTACAATTTTATTGGTATCAGAGC
25279511 CACGGTTTAGTCGATTCTAGGACTACCGTGATGTGTTTGGGGTCTAGCTATACATGCCATTAAAT
586 CACGGTTTAGTCGATTCTAGGACTACCGTGATGTGTTTGGGGTCTAGCTATACATGCCATTAAAT
25279576 GATGAATCGATAGTGTGGTGATTTCTGACAATTTGACTTTGTGTTTGTTTATAGTAATGGATCCC
651 GATGAATCGATAGTGTGGTGATTTCTGACAATTTGACTTTGTGTTTGTTTATAGTAATGGATCCC
25279641 GATCCCAACCGAGCGATAGCTGATGATGTGGAGAGTGTGGCGCCTGCTCCCGCGCAAGGGACAGC
716 GATCCCAACCGAGCGATAGCTGATGATGTGGAGAGTGTGGCGCCTGCTCCCGCGCAAGGGACAGC
25279706 GCCGGCGGACTCTCAACCTATGGCCAGCAATCCGAATGATGAGGCTAGGCAAGCCTTTTATAGTG
781 GCCGGCGGACTCTCAACCTATGGCCAGCAATCCGAATGATGAGGCTAGGCAAGCCTTTTATAGTG
25279771 TGATGAACGAATGGTTTAACCAATACATTCGAACTAACACGGCTGTTCCACAACCTCCATTCCCG
846 TGATGAACGAATGGTTTAACCAATACATTCGAACTAACACGGCTGTTCCACAACCTCCATTCCCG
25279836 ACAAATGCAACCCCCGCACCTAC
911 ACAAATGCAACCCCCGCACCTAC
*
25279859 AAATGAACCTTAATGAGTCTATTTTCATATGGAAGAAACGAAACGGTCGTAGGAGTTACATGTTA
1 AAATGAACCTTAATGAGTCTATTTTCATATGGAAGAAACGAAATGGTCGTAGGAGTTACATGTTA
*
25279924 AGAGATATTAAAGCTATTGTGAGACAGGGCCAGAACGGTTTCTGGGTCCCCTGTCGCCACTTTAA
66 AGAGATATTAAAGCTATTGTGAGACAGGGCCAGAACGGTTTCTGGGTCCCCTGTCGCAACTTTAA
* *
25279989 AAATTTACTATAAATTATCCAGAGAGAATTAGGAGTCATGCCTTATATGTACAGATTCCATTTTG
131 AAATTTACTATAAATTATCCAGAAAGAATTAGGAGTCATGCCTTATATTTACAGATTCCATTTTG
*
25280054 AGTCTAGTTTCATTAGAAATAAACGGAACCAGTATTAAAGCCCTGTACAGTGAGATATTCAAGTT
196 AGTCTAGTTTCATTAGAAACAAACGGAACCAGTATTAAAGCCCTGTACAGTGAGATATTCAAGTT
*
25280119 GTAACGCGCGAAGGTCAGAGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGTAC
261 GTAATGCGCGAAGGTCAGAGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGTAC
*
25280184 CAATTGGCCCGACCAAAAATTCTAGAAATAAATCCATGGATGGATATATGAGTCTAAATTCAGGA
326 CAATTGGCCCGACCAAAAATTCTAGAAATAAATCCATGGATGGATATATGAGTCTAAATTCAGGG
** * *
25280249 AAAATTTACAAAACCAGTTTCCGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACAGTGACG
391 AAAATTTATGAAACCAGTTTCTGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGACG
* *
25280314 CAGTTTTCCAGCCTGACTGGAAATGTCAAATTGGTGGGCAAAATATGTGGACTTGACTTATTAAC
456 TAGTTTTCCAGCCCGACTGGAAATGTCAAATTGGTGGGCAAAATATGTGGACTTGACTTATTAAC
*
25280379 CCCTCGTGTCCGACACCGGCAATGGTCTCGGGTTCGGGGTGTTACA
521 CCCTCGTGTCCGACACCGGCAATGGTCTCGGGTTCTGGGTGTTACA
25280425 TTATTTACAT
Statistics
Matches: 1477, Mismatches: 22, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
933 1477 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (933 bp):
AAATGAACCTTAATGAGTCTATTTTCATATGGAAGAAACGAAATGGTCGTAGGAGTTACATGTTA
AGAGATATTAAAGCTATTGTGAGACAGGGCCAGAACGGTTTCTGGGTCCCCTGTCGCAACTTTAA
AAATTTACTATAAATTATCCAGAAAGAATTAGGAGTCATGCCTTATATTTACAGATTCCATTTTG
AGTCTAGTTTCATTAGAAACAAACGGAACCAGTATTAAAGCCCTGTACAGTGAGATATTCAAGTT
GTAATGCGCGAAGGTCAGAGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGTAC
CAATTGGCCCGACCAAAAATTCTAGAAATAAATCCATGGATGGATATATGAGTCTAAATTCAGGG
AAAATTTATGAAACCAGTTTCTGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGACG
TAGTTTTCCAGCCCGACTGGAAATGTCAAATTGGTGGGCAAAATATGTGGACTTGACTTATTAAC
CCCTCGTGTCCGACACCGGCAATGGTCTCGGGTTCTGGGTGTTACAATTTTATTGGTATCAGAGC
CACGGTTTAGTCGATTCTAGGACTACCGTGATGTGTTTGGGGTCTAGCTATACATGCCATTAAAT
GATGAATCGATAGTGTGGTGATTTCTGACAATTTGACTTTGTGTTTGTTTATAGTAATGGATCCC
GATCCCAACCGAGCGATAGCTGATGATGTGGAGAGTGTGGCGCCTGCTCCCGCGCAAGGGACAGC
GCCGGCGGACTCTCAACCTATGGCCAGCAATCCGAATGATGAGGCTAGGCAAGCCTTTTATAGTG
TGATGAACGAATGGTTTAACCAATACATTCGAACTAACACGGCTGTTCCACAACCTCCATTCCCG
ACAAATGCAACCCCCGCACCTAC
Found at i:25286305 original size:48 final size:48
Alignment explanation
Indices: 25286102--25286423 Score: 187
Period size: 48 Copynumber: 6.8 Consensus size: 48
25286092 ACCAAGGTTA
* * * ** * *
25286102 ATGAGATCCCGTGTAAGACCATGTTTGGGACATGGCATCAACGTCAAG-
1 ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATCGGCAT-TAGT
* * * * * * * *
25286150 AGGTGATCCCGTATAAGACCATATCAGGGATATGGCTTCGGCA-TCGTT
1 ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATCGGCATTAG-T
* * ** * *
25286198 AAGTGATTTCATATAAGACGATGTCTGGGACATGGCAT-TG-A-TA--
1 ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATCGGCATTAGT
25286241 A-GAGATCCCATATAAGACCATGTCTGGGACATGGCATCGGCATTAGT
1 ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATCGGCATTAGT
* * * * **
25286288 ATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGGT
1 ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATCGGCATTAGT
* ** * * * *
25286336 GTGAGGCCCCGTATAAGACCATGTCTGGGAAATGGCATAGGCACT-GAT
1 ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATCGGCATTAG-T
* * * * *
25286384 ATGAGA-CTTCGTATAAGACCATATCTGGGATATGGTATCG
1 ATGAGATC-CCATATAAGACCATGTCTGGGACATGGCATCG
25286424 ATATGGGTCC
Statistics
Matches: 212, Mismatches: 52, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
42 32 0.15
43 2 0.01
44 1 0.00
45 2 0.01
46 3 0.01
47 4 0.02
48 168 0.79
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATCGGCATTAGT
Found at i:25286305 original size:90 final size:93
Alignment explanation
Indices: 25286102--25286327 Score: 226
Period size: 90 Copynumber: 2.4 Consensus size: 93
25286092 ACCAAGGTTA
* * ** *
25286102 ATGAGATCCCGTGTAAGACCATGTTTGGGACATGGCATCAACGTCAAGAGGTGATCCCGTATAAG
1 ATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGAC-TCAAGA-G-GATCCCATATAAG
* * *
25286167 ACCATATCAGGGATATGGCTTCGGCATCGTT
63 ACCATATCAGGGACATGGCATCGGCATAGTT
* * ** * *
25286198 AAGTGATTTCATATAAGACGATGTCTGGGACATGGCATTGA-T-AAGA-GATCCCATATAAGACC
1 ATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACTCAAGAGGATCCCATATAAGACC
* *
25286260 ATGTCTGGGACATGGCATCGGCATTAG-T
66 ATATCAGGGACATGGCATCGGCA-TAGTT
* *
25286288 ATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTG
1 ATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTG
25286328 GCATCGGTGT
Statistics
Matches: 105, Mismatches: 24, Indels: 8
0.77 0.18 0.06
Matches are distributed among these distances:
90 67 0.64
91 2 0.02
93 4 0.04
94 1 0.01
96 31 0.30
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (93 bp):
ATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACTCAAGAGGATCCCATATAAGACC
ATATCAGGGACATGGCATCGGCATAGTT
Found at i:25288735 original size:18 final size:20
Alignment explanation
Indices: 25288700--25288738 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
25288690 TTCATATAGT
*
25288700 TTTCTCTTCATGCTTTCCTC
1 TTTCTCTTCATGCCTTCCTC
25288720 TTTCT-TTCAT-CCTTCCTC
1 TTTCTCTTCATGCCTTCCTC
25288738 T
1 T
25288739 ATATGGATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 5 0.28
20 5 0.28
ACGTcount: A:0.05, C:0.36, G:0.03, T:0.56
Consensus pattern (20 bp):
TTTCTCTTCATGCCTTCCTC
Found at i:25289913 original size:54 final size:54
Alignment explanation
Indices: 25289840--25289986 Score: 206
Period size: 54 Copynumber: 2.7 Consensus size: 54
25289830 TTTTCACATT
* * *
25289840 ATGCCATAGTCCCAAACTAGGTCTTACACTATGTGGTTCTCT-TATCCTCATATG
1 ATGCCATAGTCCCAGACTAGGTCTTACACTATGTGG-TCTCTGTATCCCCATACG
* * *
25289894 ATGCCATAATCCCAGACTAGGTCTTACACTATATGGTCTTTGTATCCCCATACG
1 ATGCCATAGTCCCAGACTAGGTCTTACACTATGTGGTCTCTGTATCCCCATACG
* *
25289948 ATGCCATAGTCCTAGACTAGGTCTTACACTATGAGGTCT
1 ATGCCATAGTCCCAGACTAGGTCTTACACTATGTGGTCT
25289987 TCTTGTTGTG
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.05
54 78 0.95
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (54 bp):
ATGCCATAGTCCCAGACTAGGTCTTACACTATGTGGTCTCTGTATCCCCATACG
Found at i:25291977 original size:7 final size:7
Alignment explanation
Indices: 25291961--25291993 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
25291951 TGAATGAGGA
*
25291961 ATGAGGG
1 ATGAGTG
25291968 ATGAGTG
1 ATGAGTG
25291975 ATGAGTG
1 ATGAGTG
25291982 ATGAGTG
1 ATGAGTG
25291989 ATGAG
1 ATGAG
25291994 GGACGAGTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.45, T:0.24
Consensus pattern (7 bp):
ATGAGTG
Found at i:25291978 original size:14 final size:14
Alignment explanation
Indices: 25291961--25292001 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
25291951 TGAATGAGGA
25291961 ATGAGGGATGAGTG
1 ATGAGGGATGAGTG
*
25291975 ATGAGTGATGAGTG
1 ATGAGGGATGAGTG
*
25291989 ATGAGGGACGAGT
1 ATGAGGGATGAGT
25292002 AGAAATGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.29, C:0.02, G:0.46, T:0.22
Consensus pattern (14 bp):
ATGAGGGATGAGTG
Found at i:25292001 original size:21 final size:21
Alignment explanation
Indices: 25291961--25292001 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
25291951 TGAATGAGGA
* *
25291961 ATGAGGGATGAGTGATGAGTG
1 ATGAGGGATGAGGGACGAGTG
*
25291982 ATGAGTGATGAGGGACGAGT
1 ATGAGGGATGAGGGACGAGT
25292002 AGAAATGTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.02, G:0.46, T:0.22
Consensus pattern (21 bp):
ATGAGGGATGAGGGACGAGTG
Found at i:25293893 original size:15 final size:15
Alignment explanation
Indices: 25293870--25293899 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25293860 AAATTTAAAA
*
25293870 GTTTGAGCAATTTAT
1 GTTTAAGCAATTTAT
25293885 GTTTAAGCAATTTAT
1 GTTTAAGCAATTTAT
25293900 TTGCCTTACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.47
Consensus pattern (15 bp):
GTTTAAGCAATTTAT
Found at i:25301356 original size:29 final size:29
Alignment explanation
Indices: 25301332--25301425 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
25301322 TCGCACACCC
*
25301332 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
25301361 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
25301390 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
25301419 AGTGCCA
1 AGTGCCA
25301426 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:25301357 original size:58 final size:58
Alignment explanation
Indices: 25301294--25301425 Score: 167
Period size: 58 Copynumber: 2.3 Consensus size: 58
25301284 GATTTAAGCC
* * * *
25301294 CGCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCA
* * * **
25301352 TGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
25301410 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
25301426 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
58 62 0.98
59 1 0.02
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
Found at i:25324324 original size:16 final size:16
Alignment explanation
Indices: 25324293--25324334 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 16
25324283 ATGTGAATAA
25324293 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
25324309 TATT-TTTAAAA-T-T
1 TATTATTTAAAATTAT
*
25324322 TATTAATTAAAAT
1 TATTATTTAAAAT
25324335 AAAATTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
13 5 0.22
14 7 0.30
15 7 0.30
16 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:25324397 original size:16 final size:15
Alignment explanation
Indices: 25324372--25324401 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
25324362 AATAATAAAC
25324372 TATATTTATTATATT
1 TATATTTATTATATT
25324387 TATATTTTATTATAT
1 TATA-TTTATTATAT
25324402 GACTAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TATATTTATTATATT
Found at i:25327393 original size:9 final size:9
Alignment explanation
Indices: 25327379--25327432 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
25327369 CCACATAATT
25327379 TAACTAAAG
1 TAACTAAAG
*
25327388 TAACTAAAT
1 TAACTAAAG
*
25327397 TAGCTAAAG
1 TAACTAAAG
*
25327406 TAACTAAAAT
1 TAACT-AAAG
* *
25327416 TAGCTATAG
1 TAACTAAAG
25327425 TAACTAAA
1 TAACTAAA
25327433 TTTGAGCAAA
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
9 27 0.79
10 7 0.21
ACGTcount: A:0.52, C:0.11, G:0.09, T:0.28
Consensus pattern (9 bp):
TAACTAAAG
Found at i:25327405 original size:18 final size:18
Alignment explanation
Indices: 25327382--25327434 Score: 88
Period size: 19 Copynumber: 2.9 Consensus size: 18
25327372 CATAATTTAA
25327382 CTAAAGTAACTAAATTAG
1 CTAAAGTAACTAAATTAG
25327400 CTAAAGTAACTAAAATTAG
1 CTAAAGTAACT-AAATTAG
*
25327419 CTATAGTAACTAAATT
1 CTAAAGTAACTAAATT
25327435 TGAGCAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
18 16 0.48
19 17 0.52
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.30
Consensus pattern (18 bp):
CTAAAGTAACTAAATTAG
Found at i:25331929 original size:28 final size:27
Alignment explanation
Indices: 25331863--25331935 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
25331853 ATAGTGAGTC
*
25331863 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
*
25331890 CGCACACTTAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
25331918 CGCACACTTAGTGCTATA
1 CGCACACTTAGTGCTATA
25331936 CAAATTTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 23 0.53
28 20 0.47
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:25346343 original size:23 final size:23
Alignment explanation
Indices: 25346309--25346444 Score: 157
Period size: 23 Copynumber: 5.7 Consensus size: 23
25346299 TCCTCCTGAA
25346309 CTGATAACAGTAAGCTCTAATGAG
1 CTGA-AACAGTAAGCTCTAATGAG
25346333 CTGAAACAGTAAGCTCTAATGAG
1 CTGAAACAGTAAGCTCTAATGAG
25346356 CTGAAACAGTAAGCTCT-ATCGAG
1 CTGAAACAGTAAGCTCTAAT-GAG
* * *
25346379 TTGAAACGGTAAGCTCCAATGAG
1 CTGAAACAGTAAGCTCTAATGAG
* * *
25346402 CGGAAAACAGTAAGCTCTTACGAG
1 CTG-AAACAGTAAGCTCTAATGAG
25346426 CTGATATATCAGTAAGCTC
1 CTGA-A-A-CAGTAAGCTC
25346445 ATACGAGCTG
Statistics
Matches: 96, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.02
23 58 0.60
24 25 0.26
25 1 0.01
26 10 0.10
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (23 bp):
CTGAAACAGTAAGCTCTAATGAG
Found at i:25351026 original size:12 final size:12
Alignment explanation
Indices: 25351009--25351034 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
25350999 AATCGTGTGG
25351009 CCGTCTTCGAGT
1 CCGTCTTCGAGT
25351021 CCGTCTTCGAGT
1 CCGTCTTCGAGT
25351033 CC
1 CC
25351035 CTCGCAGCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.38, G:0.23, T:0.31
Consensus pattern (12 bp):
CCGTCTTCGAGT
Done.