Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 90 of 425
Found at i:26121935 original size:55 final size:53
Alignment explanation
Indices: 26121806--26121994 Score: 200
Period size: 55 Copynumber: 3.5 Consensus size: 53
26121796 AACTTACCAT
* * * *
26121806 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTCCCTTATAGAACTCATCAA
* * * *
26121859 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCGA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTCCCTTATAG-AACTCATCAA
* * * * * *
26121914 TGTCATGTCTTGACATGGTCTTCCATGATTTCCTTCCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTCCCTTATAGAACTCATCAA
*
26121968 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
26121995 ATATCCTTAT
Statistics
Matches: 111, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
52 2 0.02
53 34 0.31
54 32 0.29
55 41 0.37
56 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTCCCTTATAGAACTCATCAA
Found at i:26122153 original size:45 final size:45
Alignment explanation
Indices: 26122093--26122178 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
26122083 CCTTAATCAA
26122093 TGCCAATGCCATGTCTTGACATGGTCTTACATAGG-ATCCTTGCCT
1 TGCCAATGCCATGTCTTGACATGGTCTTACAT-GGTATCCTTGCCT
26122138 TGCCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
1 TGCCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
26122179 AACCGTCAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
44 2 0.05
45 38 0.95
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.35
Consensus pattern (45 bp):
TGCCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCT
Found at i:26122850 original size:30 final size:31
Alignment explanation
Indices: 26122807--26122864 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
26122797 CTAACTCAAA
26122807 CTTTGGCAAAATTACAATTTTGCCCCTAAAC
1 CTTTGGCAAAATTACAATTTTGCCCCTAAAC
* * *
26122838 CTTT-GCAGAATTACGATTTTTCCCCTA
1 CTTTGGCAAAATTACAATTTTGCCCCTA
26122865 GGCTCGGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.10, T:0.36
Consensus pattern (31 bp):
CTTTGGCAAAATTACAATTTTGCCCCTAAAC
Found at i:26124446 original size:12 final size:12
Alignment explanation
Indices: 26124429--26124453 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26124419 TATTCCACAC
26124429 ATTCAACACAAG
1 ATTCAACACAAG
26124441 ATTCAACACAAG
1 ATTCAACACAAG
26124453 A
1 A
26124454 GTCACCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.08, T:0.16
Consensus pattern (12 bp):
ATTCAACACAAG
Found at i:26131602 original size:61 final size:62
Alignment explanation
Indices: 26131533--26131682 Score: 170
Period size: 58 Copynumber: 2.5 Consensus size: 62
26131523 TAATAGGATT
** **
26131533 TTATTAAATATAATTTAATAAAAATAATAATACATAATTTAATTCTATT-TTAATA-AATTTA
1 TTATTAAATATAATTTAATAAAAATAATAATACATAATTTAATAATATTCTTAATATAA-CAA
*
26131594 TTATTAAATATAATTTAACT----ATAATAATATATAATTTAATAATATTCTTAATATAACAA
1 TTATTAAATATAATTTAA-TAAAAATAATAATACATAATTTAATAATATTCTTAATATAACAA
26131653 TTATTAAAATATGAA-TTAATAAAAATAATA
1 TTATT-AAATAT-AATTTAATAAAAATAATA
26131683 TATAATATTA
Statistics
Matches: 75, Mismatches: 5, Indels: 16
0.78 0.05 0.17
Matches are distributed among these distances:
58 23 0.31
59 13 0.17
60 12 0.16
61 20 0.27
62 1 0.01
63 6 0.08
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (62 bp):
TTATTAAATATAATTTAATAAAAATAATAATACATAATTTAATAATATTCTTAATATAACAA
Found at i:26131841 original size:12 final size:12
Alignment explanation
Indices: 26131811--26131845 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
26131801 TCTATGTTAC
26131811 TTAAAGAATAAT
1 TTAAAGAATAAT
*
26131823 TTAAAAGAGTAAT
1 TT-AAAGAATAAT
26131836 TTAAAGAATA
1 TTAAAGAATA
26131846 TCTTGTCTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (12 bp):
TTAAAGAATAAT
Found at i:26137750 original size:22 final size:22
Alignment explanation
Indices: 26137725--26137766 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
26137715 TATATCAAAA
26137725 CCAAA-ACATACCAAATCATAAG
1 CCAAAGACATACCAAA-CATAAG
*
26137747 CCAAAGTCATACCAAACATA
1 CCAAAGACATACCAAACATA
26137767 TGATTCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.52, C:0.29, G:0.05, T:0.14
Consensus pattern (22 bp):
CCAAAGACATACCAAACATAAG
Found at i:26138549 original size:42 final size:43
Alignment explanation
Indices: 26138448--26138561 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
26138438 AAGCTCGTAC
*
26138448 AATGCCAAC-GTCCCAAAC-GTGTTCTTACATGCAATCAAATATT
1 AATGCC-ACTGTCCCAAACAG-GGTCTTACATGCAATCAAATATT
26138491 AATGCCACTGTCCCAAACAGGGTCTTACATG-AATTCAAATA-T
1 AATGCCACTGTCCCAAACAGGGTCTTACATGCAA-TCAAATATT
** *
26138533 AATGTTGA-TGTCCCAAACATGGTCTTACA
1 AATG-CCACTGTCCCAAACAGGGTCTTACA
26138562 CGTAAATCTC
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
42 29 0.46
43 33 0.52
44 1 0.02
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (43 bp):
AATGCCACTGTCCCAAACAGGGTCTTACATGCAATCAAATATT
Found at i:26141167 original size:15 final size:15
Alignment explanation
Indices: 26141149--26141178 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26141139 GACATTAAGC
26141149 ATGTAGGATGGAGGT
1 ATGTAGGATGGAGGT
26141164 ATGTAGGATGGAGGT
1 ATGTAGGATGGAGGT
26141179 GCATATAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.47, T:0.27
Consensus pattern (15 bp):
ATGTAGGATGGAGGT
Found at i:26142642 original size:47 final size:46
Alignment explanation
Indices: 26142442--26142713 Score: 230
Period size: 47 Copynumber: 5.8 Consensus size: 46
26142432 GGGATAAGTT
* * * *
26142442 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGGAC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATATGTAC
* ** *
26142490 ATGCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAATCT-TA-
1 --GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATATGTAC
* * * * * *
26142536 TCCGATGCCATGTCCCAGCCACGTCTTATACTGGCTA-TCAT-TGTTGAG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGC-ACTCATATG-T-AC
* *
26142584 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATATGTAC
* * *
26142630 GCCGATGCCATGTCCCAGACATGCTCTTACACTGGCTCTCATAATGT-G
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTAGCACTCAT-ATGTAC
*
26142678 GCTGATGCATGTCCCAGACATGTCTTACACTAGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCAC
26142714 ACAAATCTCC
Statistics
Matches: 180, Mismatches: 31, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
44 6 0.03
45 25 0.14
46 23 0.13
47 60 0.33
48 44 0.24
49 16 0.09
50 6 0.03
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATATGTAC
Found at i:26142646 original size:94 final size:92
Alignment explanation
Indices: 26142442--26142714 Score: 341
Period size: 94 Copynumber: 2.9 Consensus size: 92
26142432 GGGATAAGTT
* * * * * *
26142442 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGGACATGCTGATGCATGTCCC
1 GCCGATGCCATGTCCCAGACACGCTCTTACACTGGCTATCATAATG--AGGCCGATGCATGTCCC
26142507 AGACATGTCTTACACTAGCACAAATCTTA
64 AGACATGTCTTACACTAGCACAAATCTTA
* * * **
26142536 TCCGATGCCATGTCCCAGCCACG-TCTTATACTGGCTATCATTGTTGAGGCCGATGCATGTCCCA
1 GCCGATGCCATGTCCCAGACACGCTCTTACACTGGCTATCA-TAATGAGGCCGATGCATGTCCCA
**
26142600 GACATGTCTTACACTAGCACTCATCTCTA
65 GACATGTCTTACACTAGCACAAATCT-TA
* * * *
26142629 CGCCGATGCCATGTCCCAGACATGCTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCA
1 -GCCGATGCCATGTCCCAGACACGCTCTTACACTGGCTATCATAATGAGGCCGATGCATGTCCCA
26142694 GACATGTCTTACACTAGCACA
65 GACATGTCTTACACTAGCACA
26142715 CAAATCTCCC
Statistics
Matches: 153, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
92 40 0.26
93 17 0.11
94 81 0.53
95 15 0.10
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
GCCGATGCCATGTCCCAGACACGCTCTTACACTGGCTATCATAATGAGGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCACAAATCTTA
Found at i:26153586 original size:47 final size:46
Alignment explanation
Indices: 26153477--26153685 Score: 185
Period size: 47 Copynumber: 4.5 Consensus size: 46
26153467 CATGCTGATA
* * * *
26153477 CATGTCCCAGACATGTCTTACACTAGC-A-CAAATCTTA-GCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTATC-ATTATGAGGCCGATG
* * *
26153521 CATGTCCCAGACACGTCTTATACTGGCTATCATTGTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTATCATT-ATGAGGCCGATG
* * * *
26153568 CATGTCCCAAACATGTCTTACATTGGC-ACTCATCTCT-ACGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTA-TCAT-TATGAGGCCGATG
* * * * *
26153614 CCATGTCCCAGACATGGTCTTCCACTGGCTCTCATAATGTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTATCATTATGAGGCCGATG
26153662 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
26153686 AGCACACAAT
Statistics
Matches: 133, Mismatches: 22, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
44 24 0.18
45 3 0.02
46 21 0.16
47 63 0.47
48 22 0.17
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTATCATTATGAGGCCGATG
Found at i:26153665 original size:94 final size:91
Alignment explanation
Indices: 26153436--26153691 Score: 291
Period size: 94 Copynumber: 2.8 Consensus size: 91
26153426 GCATTATCCT
** *
26153436 AGACATGGTCTTACACTGGCTCTCGTATAGACAT-GCTGATACATGTCCCAGACATGTCTTACAC
1 AGACATGGTCTTACACTGGCTCTC--ATA-ATGTGGCTGATGCATGTCCCAGACATGTCTTACAC
26153500 TAGCACAAATCTTAGCCGATGCATGTCCC
63 TAGCACAAATCTTAGCCGATGCATGTCCC
* * * ** * * * * *
26153529 AGACA-CGTCTTATACTGGCTATCATTGTTGAGGCCGATGCATGTCCCAAACATGTCTTACATTG
1 AGACATGGTCTTACACTGGCTCTCA-TAATGTGGCTGATGCATGTCCCAGACATGTCTTACACTA
**
26153593 GCACTCATCTCTACGCCGATGCCATGTCCC
65 GCACAAATCT-TA-GCCGATG-CATGTCCC
*
26153623 AGACATGGTCTTCCACTGGCTCTCATAATGTGGCTGATGCATGTCCCAGACATGTCTTACACTAG
1 AGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAGACATGTCTTACACTAG
26153688 CACA
66 CACA
26153692 CAATTCTCCC
Statistics
Matches: 130, Mismatches: 27, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
90 1 0.01
91 36 0.28
92 17 0.13
93 12 0.09
94 49 0.38
95 15 0.12
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (91 bp):
AGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAGACATGTCTTACACTAG
CACAAATCTTAGCCGATGCATGTCCC
Found at i:26159266 original size:29 final size:30
Alignment explanation
Indices: 26159219--26159276 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
26159209 TTCTCCTCCA
26159219 CTTCTTCTCTTTCATTTTTTCTCTCTTCTT
1 CTTCTTCTCTTTCATTTTTTCTCTCTTCTT
*
26159249 CTTCTT-TCTTTC-TCTTTTTCTCTGTTCT
1 CTTCTTCTCTTTCAT-TTTTTCTCTCTTCT
26159277 CTACCAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 1 0.04
29 19 0.73
30 6 0.23
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.67
Consensus pattern (30 bp):
CTTCTTCTCTTTCATTTTTTCTCTCTTCTT
Found at i:26162241 original size:41 final size:42
Alignment explanation
Indices: 26162148--26162244 Score: 106
Period size: 41 Copynumber: 2.3 Consensus size: 42
26162138 GCTCGAAGGC
* * * * *
26162148 TAAACAAAAGCACATAAATGCTAAACAGAAACCCATAAAGTT
1 TAAACAGAAGCTCATAAAAGCTAAACAGAAAACCATAAAGAT
* * * *
26162190 TGAACGGAAGCTCATAAAAGCTGAACA-AAAACCATAAGGAT
1 TAAACAGAAGCTCATAAAAGCTAAACAGAAAACCATAAAGAT
26162231 TAAACAGAAGCTCA
1 TAAACAGAAGCTCA
26162245 AAAGAGTTAG
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
41 23 0.52
42 21 0.48
ACGTcount: A:0.52, C:0.19, G:0.14, T:0.15
Consensus pattern (42 bp):
TAAACAGAAGCTCATAAAAGCTAAACAGAAAACCATAAAGAT
Found at i:26162348 original size:32 final size:32
Alignment explanation
Indices: 26162312--26162376 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
26162302 ATGGAAAGTA
26162312 AACACGAAAGTTCACAACAAATGCTGAACCTC
1 AACACGAAAGTTCACAACAAATGCTGAACCTC
* *
26162344 AACACGAGAGTTCACAACAAATGTTGAACCTC
1 AACACGAAAGTTCACAACAAATGCTGAACCTC
26162376 A
1 A
26162377 GTTCACTTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.43, C:0.26, G:0.14, T:0.17
Consensus pattern (32 bp):
AACACGAAAGTTCACAACAAATGCTGAACCTC
Found at i:26170546 original size:39 final size:39
Alignment explanation
Indices: 26170503--26170589 Score: 165
Period size: 39 Copynumber: 2.2 Consensus size: 39
26170493 CCGGCAATTA
26170503 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
*
26170542 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
26170581 GCCTGCTAG
1 GCCTGCTAG
26170590 ACATTAAGTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
Found at i:26173443 original size:27 final size:28
Alignment explanation
Indices: 26173413--26173470 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
26173403 TGGTCTGCTA
26173413 AGAA-AGAGGAAATTTTACAAACTATAT
1 AGAAGAGAGGAAATTTTACAAACTATAT
*
26173440 AGAAGAGAGGAAATTTTACAAACTATGT
1 AGAAGAGAGGAAATTTTACAAACTATAT
26173468 AGA
1 AGA
26173471 TTGATTATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 4 0.14
28 25 0.86
ACGTcount: A:0.50, C:0.07, G:0.19, T:0.24
Consensus pattern (28 bp):
AGAAGAGAGGAAATTTTACAAACTATAT
Found at i:26174596 original size:19 final size:19
Alignment explanation
Indices: 26174569--26174605 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26174559 ATTAATGCTT
*
26174569 TTATGTGGTGTAGTACTAA
1 TTATGTGGTGTAATACTAA
*
26174588 TTATTTGGTGTAATACTA
1 TTATGTGGTGTAATACTA
26174606 GTAATGCACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.46
Consensus pattern (19 bp):
TTATGTGGTGTAATACTAA
Found at i:26174637 original size:46 final size:46
Alignment explanation
Indices: 26174581--26174672 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
26174571 ATGTGGTGTA
* *
26174581 GTACTAATTATTTGGTGTAATACTAGTAATGCACTTGGACAATATT
1 GTACTAATTATGTGGTGTAATACTAATAATGCACTTGGACAATATT
* * * * *
26174627 GTACTTATTATGTGGTGTACTACTAATTATGCACTTTGATAATATT
1 GTACTAATTATGTGGTGTAATACTAATAATGCACTTGGACAATATT
26174673 ATTAATTTGT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.42
Consensus pattern (46 bp):
GTACTAATTATGTGGTGTAATACTAATAATGCACTTGGACAATATT
Found at i:26175475 original size:48 final size:48
Alignment explanation
Indices: 26175413--26175506 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
26175403 CAAAACAAAG
* * *
26175413 ATAATCATGCAAGAAGATATACGGATTGTTGATTACCTTTGGCAGATC
1 ATAATCACGCAAGAAGATATACGGATTATTGACTACCTTTGGCAGATC
*
26175461 ATAATCACGTAAGAAGATATACGGATTATTGACTACCTTTGGCAGA
1 ATAATCACGCAAGAAGATATACGGATTATTGACTACCTTTGGCAGA
26175507 CTTGCAGATA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (48 bp):
ATAATCACGCAAGAAGATATACGGATTATTGACTACCTTTGGCAGATC
Found at i:26178019 original size:19 final size:19
Alignment explanation
Indices: 26177997--26178061 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
26177987 AACTGTAATT
26177997 CAGGGGTACCGATGTACAA
1 CAGGGGTACCGATGTACAA
* ** *
26178016 CAGGGGCACATAAGTGTA-ATT
1 CAGGGGTAC-CGA-TGTACA-A
*
26178037 CAGGGGTACCGAAGTACAA
1 CAGGGGTACCGATGTACAA
26178056 CAGGGG
1 CAGGGG
26178062 CACGTAAGTA
Statistics
Matches: 33, Mismatches: 9, Indels: 8
0.66 0.18 0.16
Matches are distributed among these distances:
19 17 0.52
20 4 0.12
21 12 0.36
ACGTcount: A:0.32, C:0.18, G:0.34, T:0.15
Consensus pattern (19 bp):
CAGGGGTACCGATGTACAA
Found at i:26178051 original size:21 final size:21
Alignment explanation
Indices: 26177990--26178051 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
26177980 GGCATGTAAC
26177990 TGTAATTCAGGGGTACCG-A-
1 TGTAATTCAGGGGTACCGAAG
* * **
26178009 TGTACA-ACAGGGGCACATAAG
1 TGTA-ATTCAGGGGTACCGAAG
26178030 TGTAATTCAGGGGTACCGAAG
1 TGTAATTCAGGGGTACCGAAG
26178051 T
1 T
26178052 ACAACAGGGG
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
19 12 0.39
20 3 0.10
21 16 0.52
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.23
Consensus pattern (21 bp):
TGTAATTCAGGGGTACCGAAG
Found at i:26178070 original size:19 final size:19
Alignment explanation
Indices: 26178010--26178074 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
26178000 GGGTACCGAT
*
26178010 GTACAACAGGGGCACATAA
1 GTACAACAGGGGCACGTAA
** *
26178029 GTGTAATTCAGGGGTACCG-AA
1 GTACAA--CAGGGGCA-CGTAA
26178050 GTACAACAGGGGCACGTAA
1 GTACAACAGGGGCACGTAA
26178069 GTACAA
1 GTACAA
26178075 TTCAGGGTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
18 2 0.06
19 19 0.54
21 13 0.37
22 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.29, T:0.15
Consensus pattern (19 bp):
GTACAACAGGGGCACGTAA
Found at i:26178070 original size:40 final size:40
Alignment explanation
Indices: 26177893--26178081 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
26177883 TCGGAGTGTA
* * * * *
26177893 AACAGGGACACGTATGTGTAATTCAGGGGTACTGAATTATA
1 AACAGGGGCACGTAAGTGTAATTCAGGGGTACCGAAGTA-C
* * * * * *
26177934 AAAAGGGGAACATAAGTGAAATTTAGGGGTACCAAAGTAC
1 AACAGGGGCACGTAAGTGTAATTCAGGGGTACCGAAGTAC
* * *
26177974 AACAGGGGCATGTAACTGTAATTCAGGGGTACCGATGTAC
1 AACAGGGGCACGTAAGTGTAATTCAGGGGTACCGAAGTAC
*
26178014 AACAGGGGCACATAAGTGTAATTCAGGGGTACCGAAGTAC
1 AACAGGGGCACGTAAGTGTAATTCAGGGGTACCGAAGTAC
**
26178054 AACAGGGGCACGTAAGTACAATTCAGGG
1 AACAGGGGCACGTAAGTGTAATTCAGGG
26178082 TATAATTAAG
Statistics
Matches: 121, Mismatches: 27, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
40 92 0.76
41 29 0.24
ACGTcount: A:0.36, C:0.15, G:0.29, T:0.20
Consensus pattern (40 bp):
AACAGGGGCACGTAAGTGTAATTCAGGGGTACCGAAGTAC
Found at i:26178077 original size:80 final size:81
Alignment explanation
Indices: 26177893--26178081 Score: 238
Period size: 80 Copynumber: 2.3 Consensus size: 81
26177883 TCGGAGTGTA
* * * *
26177893 AACAGGGACACGTATGTGTAATTCAGGGGTACTGAATTATAAAAAGGGGAACATAAGTGAAATTT
1 AACAGGGGCACGTAAGTGTAATTCAGGGGTACCGAATTATAAAAAGGGGAACATAAGTGAAATTC
26177958 AGGGGTACCAAAGTAC
66 AGGGGTACCAAAGTAC
* * * * * *
26177974 AACAGGGGCATGTAACTGTAATTCAGGGGTACCG-ATGTA-CAACAGGGGCACATAAGTGTAATT
1 AACAGGGGCACGTAAGTGTAATTCAGGGGTACCGAAT-TATAAAAAGGGGAACATAAGTGAAATT
*
26178037 CAGGGGTACCGAAGTAC
65 CAGGGGTACCAAAGTAC
**
26178054 AACAGGGGCACGTAAGTACAATTCAGGG
1 AACAGGGGCACGTAAGTGTAATTCAGGG
26178082 TATAATTAAG
Statistics
Matches: 92, Mismatches: 15, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
80 61 0.66
81 31 0.34
ACGTcount: A:0.36, C:0.15, G:0.29, T:0.20
Consensus pattern (81 bp):
AACAGGGGCACGTAAGTGTAATTCAGGGGTACCGAATTATAAAAAGGGGAACATAAGTGAAATTC
AGGGGTACCAAAGTAC
Found at i:26179390 original size:16 final size:16
Alignment explanation
Indices: 26179365--26179395 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26179355 GTTTACATCA
26179365 CAAAACATTCAAAATT
1 CAAAACATTCAAAATT
*
26179381 CAAAAGATTCAAAAT
1 CAAAACATTCAAAAT
26179396 AATTCATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.16, G:0.03, T:0.23
Consensus pattern (16 bp):
CAAAACATTCAAAATT
Found at i:26180855 original size:30 final size:30
Alignment explanation
Indices: 26180819--26181141 Score: 287
Period size: 30 Copynumber: 10.7 Consensus size: 30
26180809 ATGGTTGTCA
*
26180819 CTATCCCTTTTCATGATTTGATAGTCGAAG
1 CTATCCCTTTTCATAATTTGATAGTCGAAG
* * *
26180849 CTATCCCTTTTCATATTTTGATGGTCGTCA-
1 CTATCCCTTTTCATAATTTGATAGTCG-AAG
* * *
26180879 CTATCCCTTTTCAT-AGTTGATGGTCGTCA-
1 CTATCCCTTTTCATAATTTGATAGTCG-AAG
* *
26180908 CCATCCCTTTTCATAATTTGATAGCCGAAG
1 CTATCCCTTTTCATAATTTGATAGTCGAAG
* * * * * *
26180938 CTATCTCTTTTTATAATTCGACAGCCAAAG
1 CTATCCCTTTTCATAATTTGATAGTCGAAG
* ** * *
26180968 CTATCCCTTTTCATAGTTCAATGGTCGTCA-
1 CTATCCCTTTTCATAATTTGATAGTCG-AAG
* * *
26180998 CCATCCCTTTCCATAATTTGATAGCCGAAG
1 CTATCCCTTTTCATAATTTGATAGTCGAAG
*
26181028 CTATCCCTTTTCATAATTTGACAG-CTGAAG
1 CTATCCCTTTTCATAATTTGATAGTC-GAAG
* *
26181058 CTATCCATTTTCATAATTTGATAGTTGAAG
1 CTATCCCTTTTCATAATTTGATAGTCGAAG
* * *
26181088 CTATCCTTTTTTTTATAATTTGATAGTAGAAG
1 CTATCC--CTTTTCATAATTTGATAGTCGAAG
*
26181120 CTATCCCTTTTCATAGTTTGAT
1 CTATCCCTTTTCATAATTTGAT
26181142 GATCGTCGAT
Statistics
Matches: 238, Mismatches: 46, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
29 29 0.12
30 180 0.76
31 2 0.01
32 27 0.11
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.41
Consensus pattern (30 bp):
CTATCCCTTTTCATAATTTGATAGTCGAAG
Found at i:26181021 original size:90 final size:89
Alignment explanation
Indices: 26180809--26181072 Score: 323
Period size: 90 Copynumber: 3.0 Consensus size: 89
26180799 TAAAACCACG
* * * * * * * **
26180809 ATGGTTGTCACTATCCCTTTTCATGATTTGATAGTCGAAGCTATCCCTTTTCATATTTTGATGGT
1 ATGGTCGTCACCATCCCTTTCCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTCGACAG-
*** *
26180874 CGTCA-CTATCCCTTTTCATAGTTG
65 CCAAAGCTATCCCTTTTCATAGTTA
* * *
26180898 ATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCTCTTTTTATAATTCGACAGC
1 ATGGTCGTCACCATCCCTTTCCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTCGACAGC
26180963 CAAAGCTATCCCTTTTCATAGTTCA
66 CAAAGCTATCCCTTTTCATAGTT-A
*
26180988 ATGGTCGTCACCATCCCTTTCCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTTGACAGC
1 ATGGTCGTCACCATCCCTTTCCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTCGACAGC
** *
26181053 TGAAGCTATCCATTTTCATA
66 CAAAGCTATCCCTTTTCATA
26181073 ATTTGATAGT
Statistics
Matches: 152, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
88 2 0.01
89 72 0.47
90 78 0.51
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (89 bp):
ATGGTCGTCACCATCCCTTTCCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTCGACAGC
CAAAGCTATCCCTTTTCATAGTTA
Found at i:26182648 original size:2 final size:2
Alignment explanation
Indices: 26182643--26182667 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26182633 TCACACATAG
26182643 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
26182668 TATCCTTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:26184527 original size:126 final size:126
Alignment explanation
Indices: 26184302--26184565 Score: 429
Period size: 126 Copynumber: 2.1 Consensus size: 126
26184292 CTATTTATTT
* * * *
26184302 TTTTTCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACACATAGTGTCTAAG
1 TTTTTCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCCAAA
* * ** * *
26184367 ACGCTTCAAGTAGGATGCACTGTCAGTAAAATTACTGGAAAAAGCTCCCACATTGATGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACATGGACGCTC
26184428 TTTTTCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCCAAA
1 TTTTTCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCCAAA
*
26184493 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACATGGACGCTC
26184554 TTTTTCTACAGT
1 TTTTTCTACAGT
26184566 GGTTCCTATT
Statistics
Matches: 127, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 127 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30
Consensus pattern (126 bp):
TTTTTCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCCAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACATGGACGCTC
Found at i:26187605 original size:9 final size:9
Alignment explanation
Indices: 26187582--26187612 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
26187572 ATTTATATTT
26187582 TATTAAAAA
1 TATTAAAAA
26187591 TA-TAAAAA
1 TATTAAAAA
26187599 TATTAAAAA
1 TATTAAAAA
26187608 TATTA
1 TATTA
26187613 CCTTATTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
TATTAAAAA
Found at i:26188147 original size:18 final size:18
Alignment explanation
Indices: 26188121--26188160 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
26188111 GACTGAGAAA
*
26188121 AGGAAACATATAAGGGTT
1 AGGAAACATATAAGGGCT
*
26188139 AGGATACATATAAGGGCT
1 AGGAAACATATAAGGGCT
26188157 AGGA
1 AGGA
26188161 GACCTACCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.07, G:0.30, T:0.20
Consensus pattern (18 bp):
AGGAAACATATAAGGGCT
Found at i:26189941 original size:25 final size:26
Alignment explanation
Indices: 26189886--26189941 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 26
26189876 AAACTAATTT
***
26189886 AGAAAAAGTTTAAATAAAGCTTTTTT
1 AGAAAAAGTTTAAATAAAGCTTTGAG
* *
26189912 TGAAAAA-TTTAAATAGAGCTTTGAG
1 AGAAAAAGTTTAAATAAAGCTTTGAG
26189937 AGAAA
1 AGAAA
26189942 TTTGAGAGGA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.48, C:0.04, G:0.16, T:0.32
Consensus pattern (26 bp):
AGAAAAAGTTTAAATAAAGCTTTGAG
Found at i:26192529 original size:29 final size:29
Alignment explanation
Indices: 26192492--26192550 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
26192482 TTTTTGGTTT
26192492 TCATAATCTTATTGGTTTTTCATATCTAA
1 TCATAATCTTATTGGTTTTTCATATCTAA
*
26192521 TCATAATCTTATTGGTTTTTCGTATCTAA
1 TCATAATCTTATTGGTTTTTCATATCTAA
26192550 T
1 T
26192551 AATTTAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.25, C:0.14, G:0.08, T:0.53
Consensus pattern (29 bp):
TCATAATCTTATTGGTTTTTCATATCTAA
Found at i:26192605 original size:25 final size:22
Alignment explanation
Indices: 26192558--26192612 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
26192548 AATAATTTAA
26192558 ATATAAATATTTATTTTATTTT
1 ATATAAATATTTATTTTATTTT
26192580 ATATAAATA-TT-TTTTATTTAT
1 ATATAAATATTTATTTTATTT-T
* *
26192601 ATTTATATATTT
1 ATATAAATATTT
26192613 GTTCGCTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 8 0.28
21 10 0.34
22 11 0.38
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
ATATAAATATTTATTTTATTTT
Found at i:26194880 original size:28 final size:30
Alignment explanation
Indices: 26194826--26194881 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 30
26194816 GCATTGATTG
* * *
26194826 TCATTAAATTACTAGAATATTTTAATTTTA
1 TCATTAAATTACTACAAGATTTAAATTTTA
26194856 TCATT-AATTA-TACAAGATTTAAATTT
1 TCATTAAATTACTACAAGATTTAAATTT
26194882 CACCGATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 13 0.57
29 5 0.22
30 5 0.22
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (30 bp):
TCATTAAATTACTACAAGATTTAAATTTTA
Found at i:26195034 original size:18 final size:17
Alignment explanation
Indices: 26195011--26195048 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
26195001 ATTTTGATAA
26195011 AAAAAATC-AGAAAAATAC
1 AAAAAATCTA-AAAAA-AC
26195029 AAAAAATCTAAAAAAAC
1 AAAAAATCTAAAAAAAC
26195046 AAA
1 AAA
26195049 TATTATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 13 0.68
19 1 0.05
ACGTcount: A:0.76, C:0.11, G:0.03, T:0.11
Consensus pattern (17 bp):
AAAAAATCTAAAAAAAC
Found at i:26195063 original size:48 final size:50
Alignment explanation
Indices: 26195011--26195117 Score: 139
Period size: 50 Copynumber: 2.2 Consensus size: 50
26195001 ATTTTGATAA
* *
26195011 AAAAAATCAGAAAAATACA-AAAA-ATCTAAAAAAACAAATATTATTTT-T
1 AAAAAATCAGAAAAAGACATAAAATATCTAAAAAAACAAA-ATTATTTTAG
* * *
26195059 AAAAAATCAGAAAAAGACATAAAATATTTAAAAATACATAATTATTTTAG
1 AAAAAATCAGAAAAAGACATAAAATATCTAAAAAAACAAAATTATTTTAG
26195109 AAAAAATCA
1 AAAAAATCA
26195118 ACAAGCGGAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
48 18 0.35
49 12 0.24
50 21 0.41
ACGTcount: A:0.64, C:0.07, G:0.04, T:0.25
Consensus pattern (50 bp):
AAAAAATCAGAAAAAGACATAAAATATCTAAAAAAACAAAATTATTTTAG
Found at i:26195927 original size:15 final size:15
Alignment explanation
Indices: 26195897--26195940 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
26195887 GAGCAAATAC
26195897 AAAATAAATAAA-AAT
1 AAAA-AAATAAATAAT
*
26195912 AAAAAAATATATAAT
1 AAAAAAATAAATAAT
26195927 AAAAAAATAAATAA
1 AAAAAAATAAATAA
26195941 ATGATAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 6 0.23
15 20 0.77
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (15 bp):
AAAAAAATAAATAAT
Found at i:26195947 original size:22 final size:23
Alignment explanation
Indices: 26195906--26195948 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
26195896 CAAAATAAAT
*
26195906 AAAAATAAAAAAATATATAATAA
1 AAAAATAAAAAAATAGATAATAA
*
26195929 AAAAATAAATAAAT-GATAAT
1 AAAAATAAAAAAATAGATAAT
26195949 TAAATGTCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (23 bp):
AAAAATAAAAAAATAGATAATAA
Found at i:26196030 original size:17 final size:18
Alignment explanation
Indices: 26195987--26196032 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
26195977 AAAATTATTA
26195987 CAAGCCCAAATTAATACC
1 CAAGCCCAAATTAATACC
*
26196005 CAATCCCCAAATT-A-ACC
1 CAA-GCCCAAATTAATACC
26196022 CAAGACCCAAA
1 CAAG-CCCAAA
26196033 ATACAAGCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 12 0.50
18 4 0.17
19 8 0.33
ACGTcount: A:0.46, C:0.37, G:0.04, T:0.13
Consensus pattern (18 bp):
CAAGCCCAAATTAATACC
Found at i:26198756 original size:132 final size:131
Alignment explanation
Indices: 26198510--26198904 Score: 497
Period size: 131 Copynumber: 3.0 Consensus size: 131
26198500 ATAATCATTC
* ** * * *
26198510 TTTTAAAAATTCTTTAAAACAAAGACGATGTTCGATATTTGGCAATTCGTGGAATCGTGCCCTAA
1 TTTTAAAAATTCTTCAAAACAAAGGTGATGTTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAT
* * * * *
26198575 CGTGCTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCA-TCCAT
66 CGTGCTGGGTTGCGATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACT-CAT
26198639 GT
130 GT
*** * *
26198641 TTTCTAAAAATTCTTCAAAACAAAGGTGACACTCGATGTTTGGTAATTCGCAGAATCGTGCCCTA
1 TTT-TAAAAATTCTTCAAAACAAAGGTGATGTTCGATGTTTGGCAATTCGCGGAATCGTGCCCTA
* * * *
26198706 TCGTGCTAGGTTGCGATTTCCCATTCGTTCAAAACAATCGAATATTCCTTTGGAATTTCACTCAT
65 TCGTGCTGGGTTGCGATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCAT
26198771 GT
130 GT
* * * *
26198773 CTTTAAAAATTC-TCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTA
1 TTTTAAAAATTCTTC-AAAACAAAGGTGATGTTCGATGTTTGGCAATTCGCGGAATCGTGCCCTA
* * **
26198837 TCGTGTTGGGTTGCGATCTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCAT
65 TCGTGCTGGGTTGCGATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCAT
26198902 GT
130 GT
26198904 T
1 T
26198905 CTCCAAATCC
Statistics
Matches: 223, Mismatches: 38, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
130 2 0.01
131 112 0.50
132 108 0.48
133 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36
Consensus pattern (131 bp):
TTTTAAAAATTCTTCAAAACAAAGGTGATGTTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAT
CGTGCTGGGTTGCGATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATG
T
Found at i:26203407 original size:21 final size:20
Alignment explanation
Indices: 26203379--26203418 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
26203369 CAAAACTTGT
26203379 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
26203399 ATAACCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
26203419 AAAATACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:26205994 original size:48 final size:48
Alignment explanation
Indices: 26205935--26206113 Score: 241
Period size: 48 Copynumber: 3.7 Consensus size: 48
26205925 ATGAGATCCC
* *
26205935 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTAATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTA
* * * * *
26205983 GTATAAGACCATGCCTGGGACATGGCATCGGCATCTGAGATGAGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGATATGTGTGCTA
* * *
26206032 GTGTAAAACCATGTCTGGGACATGGCATCGGTATTGATATGTATGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTA
* *
26206080 GTGTAAGACCATATCTGGGATATGGCATCGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAT
26206114 CAGTATGTGA
Statistics
Matches: 111, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 71 0.64
49 40 0.36
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTA
Found at i:26206091 original size:97 final size:97
Alignment explanation
Indices: 26205935--26206114 Score: 279
Period size: 97 Copynumber: 1.9 Consensus size: 97
26205925 ATGAGATCCC
* * * *
26205935 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTAATATGTGTGCTAGTATAAGACCATGCCTG
1 GTGTAAAACCATGTCTGGGACATGGCATCGGCATTAATATGTATGCTAGTATAAGACCATACCTG
26206000 GGACATGGCATCGGCATCTGAGATGAGAGCTA
66 GGACATGGCATCGGCATCTGAGATGAGAGCTA
* * * *
26206032 GTGTAAAACCATGTCTGGGACATGGCATCGGTATTGATATGTATGCTAGTGTAAGACCATATCTG
1 GTGTAAAACCATGTCTGGGACATGGCATCGGCATTAATATGTATGCTAGTATAAGACCATACCTG
*
26206097 GGATATGGCATCGGCATC
66 GGACATGGCATCGGCATC
26206115 AGTATGTGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
97 74 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (97 bp):
GTGTAAAACCATGTCTGGGACATGGCATCGGCATTAATATGTATGCTAGTATAAGACCATACCTG
GGACATGGCATCGGCATCTGAGATGAGAGCTA
Found at i:26206121 original size:48 final size:48
Alignment explanation
Indices: 26205935--26206147 Score: 211
Period size: 48 Copynumber: 4.4 Consensus size: 48
26205925 ATGAGATCCC
* * * *
26205935 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTAATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCAGTATGTATGCTA
* * *
26205983 GTATAAGACCATGCCTGGGACATGGCATCGGCATCTGAG-ATG-AGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATC--AGTATGTA-TGCTA
* * *
26206032 GTGTAAAACCATGTCTGGGACATGGCATCGGTAT-TGATATGTATGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCAG-TATGTATGCTA
* * *
26206080 GTGTAAGACCATATCTGGGATATGGCATCGGCATCAGTATGTGAT-TTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCAGTATGT-ATGCT-A
*
26206129 -TGTAAGACCATATCTGGGA
1 GTGTAAGACCATGTCTGGGA
26206148 TATGTCGTTG
Statistics
Matches: 137, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
46 1 0.01
48 93 0.68
49 42 0.31
50 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATCAGTATGTATGCTA
Found at i:26206203 original size:42 final size:42
Alignment explanation
Indices: 26206129--26206242 Score: 147
Period size: 42 Copynumber: 2.7 Consensus size: 42
26206119 TGTGATTTCA
* * * * * * *
26206129 TGTAAGACCATATCTGGGATATGTCGTTGATATGAGATTCCG
1 TGTAAGACCATGTCTAGGACATGACATCGATATGAGATCCCG
*
26206171 TGTAAGACCATGTCTAGGACATGACATCGATATGAGGTCCCG
1 TGTAAGACCATGTCTAGGACATGACATCGATATGAGATCCCG
*
26206213 TGTAAGACCATGTCTAGGACATGGCATCGA
1 TGTAAGACCATGTCTAGGACATGACATCGA
26206243 CACCGACATG
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACATGACATCGATATGAGATCCCG
Found at i:26209577 original size:24 final size:24
Alignment explanation
Indices: 26209545--26209605 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
26209535 AAAATCCAAT
* * *
26209545 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTATAAT-TA
*
26209569 GCACTATGTGTACGAGTATAATTA
1 GCACTATGTGTGCGAGTATAATTA
26209593 GCACTATGTGTGC
1 GCACTATGTGTGC
26209606 AAATTCGGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 26 0.84
25 5 0.16
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTATAATTA
Found at i:26211955 original size:29 final size:29
Alignment explanation
Indices: 26211921--26212023 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
26211911 TACTCGATCA
* *
26211921 CGCACACTTAGTGCCATGTGATTT-AAGCC
1 CGCACACTTAGTGCCATAT-ATTTCAAGCT
* * *
26211950 CGCACACATAGTGCCATACAATTTGAA-CT
1 CGCACACTTAGTGCCATA-TATTTCAAGCT
* *
26211979 CGCACACTCAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCAAGCT
*
26212008 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
26212024 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 5 0.08
29 53 0.88
30 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCAAGCT
Found at i:26220903 original size:24 final size:24
Alignment explanation
Indices: 26220871--26220931 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
26220861 AAAATCCAAT
* * *
26220871 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTATAAT-TA
26220895 GCACTATGTGTGCGAGTATAATTA
1 GCACTATGTGTGCGAGTATAATTA
26220919 GCACTATGTGTGC
1 GCACTATGTGTGC
26220932 AAATTCGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTATAATTA
Found at i:26226442 original size:14 final size:14
Alignment explanation
Indices: 26226423--26226458 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
26226413 CCCAAAGCTC
26226423 TCACAAAAGAGGTT
1 TCACAAAAGAGGTT
26226437 TCACAAAAGAGGTT
1 TCACAAAAGAGGTT
26226451 TCACAAAA
1 TCACAAAA
26226459 TTCTCTCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (14 bp):
TCACAAAAGAGGTT
Found at i:26227562 original size:16 final size:16
Alignment explanation
Indices: 26227537--26227569 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26227527 TTATTTATAT
*
26227537 TTATTCATATAATAAA
1 TTATTAATATAATAAA
26227553 TTATTAATATAATAAA
1 TTATTAATATAATAAA
26227569 T
1 T
26227570 ATAAGTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TTATTAATATAATAAA
Found at i:26227627 original size:13 final size:14
Alignment explanation
Indices: 26227611--26227652 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
26227601 TTTCAATTTT
26227611 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
26227624 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
26227639 ATTTTAAATAATAT
1 ATTTT-AATAATAT
26227653 TACTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:26227637 original size:16 final size:16
Alignment explanation
Indices: 26227615--26227651 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
26227605 AATTTTATTT
26227615 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
26227632 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
26227647 TAATA
1 TAATA
26227652 TTACTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:26227684 original size:19 final size:19
Alignment explanation
Indices: 26227660--26227703 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
26227650 TATTACTCAC
26227660 ATATTATTAAAAATATTCA
1 ATATTATTAAAAATATTCA
*
26227679 ATATTATTGAAAATATTCA
1 ATATTATTAAAAATATTCA
26227698 ATATTA
1 ATATTA
26227704 ATATTTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (19 bp):
ATATTATTAAAAATATTCA
Found at i:26227754 original size:15 final size:15
Alignment explanation
Indices: 26227703--26227754 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
26227693 ATTCAATATT
*
26227703 AATATTTTAATAATA
1 AATATATTAATAATA
*
26227718 AATATGTATTACAATTATA
1 AATA--TATT--AATAATA
26227737 AATATATTAATAATA
1 AATATATTAATAATA
26227752 AAT
1 AAT
26227755 GTTTTGTAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 13 0.43
17 7 0.23
19 10 0.33
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (15 bp):
AATATATTAATAATA
Found at i:26228226 original size:14 final size:14
Alignment explanation
Indices: 26228207--26228247 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
26228197 TTTTTCAAAA
26228207 AAAAATTATTTTCC
1 AAAAATTATTTTCC
*
26228221 AAAAATTATTTTCT
1 AAAAATTATTTTCC
26228235 AAAAATTATTTTC
1 AAAAATTATTTTC
26228248 ACTAAAACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (14 bp):
AAAAATTATTTTCC
Found at i:26232481 original size:24 final size:25
Alignment explanation
Indices: 26232454--26232501 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
26232444 AATAAAAAGA
26232454 CTAAAGTAAAAAAAAAAC-TAAATT
1 CTAAAGTAAAAAAAAAACTTAAATT
* * *
26232478 CTAAATTTACAAAAAAACTTAAAT
1 CTAAAGTAAAAAAAAAACTTAAAT
26232502 CATATTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.25
Consensus pattern (25 bp):
CTAAAGTAAAAAAAAAACTTAAATT
Found at i:26234441 original size:29 final size:28
Alignment explanation
Indices: 26234409--26234499 Score: 74
Period size: 29 Copynumber: 3.1 Consensus size: 28
26234399 AATTGAACTT
26234409 AAAAAAAGCTTAAGTACCAAATTAGGAAA
1 AAAAAAAG-TTAAGTACCAAATTAGGAAA
* * * *
26234438 AAAAATCAAGTTCAGTTACTAAATTGGGCCAA
1 AAAAA--AAGTTAAG-TACCAAATTAGG-AAA
* * *
26234470 AAAAAAATTTAGGTACCAAATTAAGAAA
1 AAAAAAAGTTAAGTACCAAATTAGGAAA
26234498 AA
1 AA
26234500 GTGTCAAGTT
Statistics
Matches: 47, Mismatches: 11, Indels: 9
0.70 0.16 0.13
Matches are distributed among these distances:
28 4 0.09
29 14 0.30
30 9 0.19
31 13 0.28
32 7 0.15
ACGTcount: A:0.55, C:0.11, G:0.13, T:0.21
Consensus pattern (28 bp):
AAAAAAAGTTAAGTACCAAATTAGGAAA
Found at i:26234492 original size:60 final size:58
Alignment explanation
Indices: 26234409--26234581 Score: 184
Period size: 60 Copynumber: 2.9 Consensus size: 58
26234399 AATTGAACTT
** *
26234409 AAAAAAAGCTTAAGTACCAAATTAGGAAAAAAAATCAAGTTCAGTTACTAAATTGGGCCA
1 AAAAAAAATTTAAGTACCAAATTA-GAAAAAAAGTCAAGTTCAG-TACTAAATTGGGCCA
* ** * *
26234469 AAAAAAAATTTAGGTACCAAATTAAGAAAAAGTGTCAAGTTCAAATACCAAATTGGGCCA
1 AAAAAAAATTTAAGTACCAAATT-AGAAAAAAAGTCAAGTTC-AGTACTAAATTGGGCCA
* * * *
26234529 AAAAGAAGTTTAAGCATCAAATTAGAAAAAAATGTCAAGTTCAAGTACTAAAT
1 AAAAAAAATTTAAGTACCAAATTAGAAAAAAA-GTCAAGTTC-AGTACTAAAT
26234582 GTTATATTAA
Statistics
Matches: 93, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
59 7 0.08
60 84 0.90
61 2 0.02
ACGTcount: A:0.51, C:0.12, G:0.14, T:0.23
Consensus pattern (58 bp):
AAAAAAAATTTAAGTACCAAATTAGAAAAAAAGTCAAGTTCAGTACTAAATTGGGCCA
Found at i:26235306 original size:36 final size:36
Alignment explanation
Indices: 26235259--26235327 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
26235249 GATAAGAAAA
26235259 AAGATGATGTTTAAGTTTTGGTCATTTTATTAGGTC
1 AAGATGATGTTTAAGTTTTGGTCATTTTATTAGGTC
26235295 AAGATGATGTTTAAGTTTTGGTCATTTTATTAG
1 AAGATGATGTTTAAGTTTTGGTCATTTTATTAG
26235328 TTCTAAAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.26, C:0.04, G:0.22, T:0.48
Consensus pattern (36 bp):
AAGATGATGTTTAAGTTTTGGTCATTTTATTAGGTC
Found at i:26235740 original size:2 final size:2
Alignment explanation
Indices: 26235733--26235761 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
26235723 TTTACGGATT
26235733 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26235762 CGTATTTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26241776 original size:145 final size:146
Alignment explanation
Indices: 26241504--26241785 Score: 410
Period size: 145 Copynumber: 1.9 Consensus size: 146
26241494 TAAACATAGA
* *
26241504 AACTTATCTGAGAATTGAAAATTTCTTGGATATTGAACTTAAGTGTTGCTGGCTAGCTGCTCAAA
1 AACTTATCTGAGAATTGAAAATTTCTTGGATATTGAACTTAAGTCTTGCTGGCTAGCTGATCAAA
* * *
26241569 CTTAACTGTTAAGTTTGAAATTTACATTCAAGGAGCTAAGGACGTTTGAAAGATATGGATTTT-A
66 CTTAACTGTTAAGTTTGAAATTTACATTCAAGGAGCTAAGGACATATGAAAGATATGAATTTTCA
26241633 TATTCATAGAATATGG
131 TATTCATAGAATATGG
26241649 AACTTATCTGAGAATTGAAAATTTCTTGGATATTGAACTTAAAAGTCTTG-TGGCTAGCTGATCA
1 AACTTATCTGAGAATTGAAAATTTCTTGGATATTGAACTT--AAGTCTTGCTGGCTAGCTGATCA
* * * * *
26241713 AACTTCACTGTTAAGTTTG-AGTTTACGTTCAAGGAGCTATGGACATATGAGAA-ATGTGAATTT
64 AACTTAACTGTTAAGTTTGAAATTTACATTCAAGGAGCTAAGGACATATGA-AAGATATGAATTT
*
26241776 TCTTATTCAT
128 TCATATTCAT
26241786 GTAATGAGAA
Statistics
Matches: 122, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
145 75 0.61
146 40 0.33
147 7 0.06
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.37
Consensus pattern (146 bp):
AACTTATCTGAGAATTGAAAATTTCTTGGATATTGAACTTAAGTCTTGCTGGCTAGCTGATCAAA
CTTAACTGTTAAGTTTGAAATTTACATTCAAGGAGCTAAGGACATATGAAAGATATGAATTTTCA
TATTCATAGAATATGG
Found at i:26243605 original size:30 final size:31
Alignment explanation
Indices: 26243571--26243629 Score: 111
Period size: 30 Copynumber: 1.9 Consensus size: 31
26243561 TATTCTTCAG
26243571 ATTTTTTTATTTTTATAAAT-TTTTAAAATT
1 ATTTTTTTATTTTTATAAATATTTTAAAATT
26243601 ATTTTTTTATTTTTATAAATATTTTAAAA
1 ATTTTTTTATTTTTATAAATATTTTAAAA
26243630 ATTTAAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 20 0.71
31 8 0.29
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (31 bp):
ATTTTTTTATTTTTATAAATATTTTAAAATT
Found at i:26243643 original size:20 final size:20
Alignment explanation
Indices: 26243617--26243667 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
26243607 TTATTTTTAT
26243617 AAATATTTTAAAAAT-TTAA
1 AAATATTTTAAAAATGTTAA
*
26243636 AAATTATTTT-AAATTGTTAA
1 AAA-TATTTTAAAAATGTTAA
26243656 AAATATTTTAAA
1 AAATATTTTAAA
26243668 TTTTTTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
AAATATTTTAAAAATGTTAA
Found at i:26243660 original size:39 final size:40
Alignment explanation
Indices: 26243581--26243667 Score: 104
Period size: 39 Copynumber: 2.2 Consensus size: 40
26243571 ATTTTTTTAT
* * ** * *
26243581 TTTTATAAATTTTTAAAATTATTTTTTTATTTTTATAAATA
1 TTTTA-AAAATTTAAAAATTATTTTTAAATTGTTAAAAATA
26243622 TTTTAAAAATTTAAAAATTA-TTTTAAATTGTTAAAAATA
1 TTTTAAAAATTTAAAAATTATTTTTAAATTGTTAAAAATA
26243661 TTTTAAA
1 TTTTAAA
26243668 TTTTTTTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
39 22 0.55
40 13 0.32
41 5 0.12
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (40 bp):
TTTTAAAAATTTAAAAATTATTTTTAAATTGTTAAAAATA
Found at i:26243668 original size:19 final size:18
Alignment explanation
Indices: 26243611--26243671 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 18
26243601 ATTTTTTTAT
*
26243611 TTTTATAAATATTTTAAAA
1 TTTTAAAAATATTTT-AAA
*
26243630 ATTTAAAAATTATTTTAAA
1 TTTTAAAAA-TATTTTAAA
26243649 TTGTTAAAAATATTTTAAA
1 TT-TTAAAAATATTTTAAA
26243668 TTTT
1 TTTT
26243672 TTTATTTAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
18 2 0.05
19 22 0.59
20 13 0.35
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
TTTTAAAAATATTTTAAA
Found at i:26244686 original size:15 final size:16
Alignment explanation
Indices: 26244666--26244695 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26244656 AGAATATTAG
26244666 TTAAAA-TTATTATTT
1 TTAAAATTTATTATTT
26244681 TTAAAATTTATTATT
1 TTAAAATTTATTATT
26244696 AAAATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTAAAATTTATTATTT
Found at i:26247098 original size:51 final size:49
Alignment explanation
Indices: 26246921--26247108 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
26246911 TAGCCAAAGC
* * * * **
26246921 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCAACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
26246970 TATCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
26247019 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * *
26247070 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
26247109 TGCGACCTCA
Statistics
Matches: 123, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
49 84 0.68
50 1 0.01
51 38 0.31
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:26265223 original size:17 final size:18
Alignment explanation
Indices: 26265191--26265224 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26265181 CCTTTCTCTC
*
26265191 CTTTTGTTCTTCCAATTG
1 CTTTTGATCTTCCAATTG
26265209 CTTTTGATC-TCCAATT
1 CTTTTGATCTTCCAATT
26265225 CCTAATCCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.15, C:0.24, G:0.09, T:0.53
Consensus pattern (18 bp):
CTTTTGATCTTCCAATTG
Found at i:26268993 original size:15 final size:15
Alignment explanation
Indices: 26268973--26269002 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26268963 AACCATAAAC
26268973 AACTATAACCACATT
1 AACTATAACCACATT
*
26268988 AACTATAAGCACATT
1 AACTATAACCACATT
26269003 TGCATGCATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.23, G:0.03, T:0.27
Consensus pattern (15 bp):
AACTATAACCACATT
Found at i:26269822 original size:45 final size:45
Alignment explanation
Indices: 26269771--26269857 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
26269761 CCGAAACACG
26269771 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
* *
26269816 TGTCACATATATCATGAACTCAGACCACAACTCAATGTGTTC
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTC
26269858 AGATTACATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
Found at i:26274209 original size:25 final size:25
Alignment explanation
Indices: 26274160--26274211 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
26274150 CATACCCAAT
*
26274160 ATAACATCAAATTCATCGAACAACA
1 ATAACATCAAATTCACCGAACAACA
26274185 ATAACATC-AATTCAGCCAGAA-AACA
1 ATAACATCAAATTCA-CC-GAACAACA
26274210 AT
1 AT
26274212 GATCTCTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 6 0.25
25 15 0.62
26 3 0.12
ACGTcount: A:0.52, C:0.23, G:0.06, T:0.19
Consensus pattern (25 bp):
ATAACATCAAATTCACCGAACAACA
Found at i:26279704 original size:42 final size:42
Alignment explanation
Indices: 26279657--26279748 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
26279647 TGGCCCTTAG
* *
26279657 GCCCATTTCAATATCACATGTAATGTTAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
26279699 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
26279741 GCCCATTT
1 GCCCATTT
26279749 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:26280913 original size:27 final size:27
Alignment explanation
Indices: 26280860--26281100 Score: 164
Period size: 27 Copynumber: 8.9 Consensus size: 27
26280850 TTTCATCCTA
* * * *
26280860 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
26280887 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* ** * * *
26280914 CAATGGTATTTCTATAGTTTTTAAAAAGT
1 CAAGGGTATTTCGGTA-ATTTTACAAA-C
* * ** *
26280943 CAAGGATATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* *
26280970 C-AGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
** * *
26280996 TGAGGGTATTTTGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
26281023 C-AGTGGTATTTCGGTAATTTTA-AAAC
1 CAAG-GGTATTTCGGTAATTTTACAAAC
* * *
26281049 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
26281076 TAAGGGTATTTTGGTAATTTCACAA
1 CAAGGGTATTTCGGTAATTTTACAA
26281101 TCGAGGGTAA
Statistics
Matches: 172, Mismatches: 36, Indels: 12
0.78 0.16 0.05
Matches are distributed among these distances:
26 43 0.25
27 102 0.59
28 14 0.08
29 13 0.08
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:26281056 original size:53 final size:54
Alignment explanation
Indices: 26280971--26281109 Score: 178
Period size: 53 Copynumber: 2.6 Consensus size: 54
26280961 TTTGTAAATC
* *
26280971 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAAC-C
1 AGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTCACAAACTA
* *
26281024 AGTGGTATTTCGGTAATTTTA-AAACTAG-GGGTATTTTGGTAATTTTACAAACTA
1 AG-GGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTTGGTAATTTCACAAACTA
* *
26281078 AGGGTATTTTGGTAATTTCAC-AATCGAGGGTA
1 AGGGTATTTTGGTAATTTTACAAATAGAGGGTA
26281110 AAACGGTAAT
Statistics
Matches: 74, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
52 2 0.03
53 51 0.69
54 21 0.28
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTCACAAACTA
Found at i:26281118 original size:53 final size:54
Alignment explanation
Indices: 26281061--26281234 Score: 167
Period size: 53 Copynumber: 3.3 Consensus size: 54
26281051 GGGGTATTTT
*** *
26281061 GGTAATTTTACAAACTAAGGGTATTTTGGTAATTTCA-CAATCGAGGGTAAAAC
1 GGTAATTTTACAAACTAAGGGTAAAATGGTAATTTCATAAATCGAGGGTAAAAC
** * *
26281114 GGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAAC
1 GGTAATTTTACAAACTAAGGGTAAAATGGTAATTTCATAAATCGAGGGTAAAAC
* * * * * *
26281168 GGTAATTCTATAAA-TCGAGGGT-GAACGGTAA-TTCTATAAATCGAGGGTAAAAT
1 GGTAATTTTACAAACT-AAGGGTAAAATGGTAATTTC-ATAAATCGAGGGTAAAAC
*
26281221 GGTAATTCTACAAA
1 GGTAATTTTACAAA
26281235 TCGAGGGCAT
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 68 0.66
54 33 0.32
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.30
Consensus pattern (54 bp):
GGTAATTTTACAAACTAAGGGTAAAATGGTAATTTCATAAATCGAGGGTAAAAC
Found at i:26281136 original size:80 final size:80
Alignment explanation
Indices: 26280956--26281150 Score: 243
Period size: 80 Copynumber: 2.4 Consensus size: 80
26280946 GGATATTTCT
* *
26280956 GTAATTTTGTAAA-TCAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACA
1 GTAATTTTGTAAACT-AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTCACA
***
26281020 AACCAGTGGTATTTCG
65 AACCAGTGGTAAAACG
*
26281036 GTAATTTT-AAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTCACA
1 GTAATTTTGTAAACTA-GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTCACA
* *
26281100 ATCGAG-GGTAAAACG
65 AACCAGTGGTAAAACG
***
26281115 GTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTA
1 GTAATTTTGTAAACT-AGGGTATTTTGGTAATTTTA
26281151 TAAATCGAGG
Statistics
Matches: 99, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
79 18 0.18
80 80 0.81
81 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (80 bp):
GTAATTTTGTAAACTAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTCACAA
ACCAGTGGTAAAACG
Found at i:26281137 original size:27 final size:27
Alignment explanation
Indices: 26281099--26281241 Score: 200
Period size: 27 Copynumber: 5.3 Consensus size: 27
26281089 GTAATTTCAC
* *
26281099 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
26281126 AA-CTGAGGGTAAAATGGTAATTTTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
26281153 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
26281180 AATCGAGGGT-GAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
26281206 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
26281233 AATCGAGGG
1 AATCGAGGG
26281242 CATTTCAGTA
Statistics
Matches: 105, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
26 26 0.25
27 78 0.74
28 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:26281162 original size:80 final size:79
Alignment explanation
Indices: 26280956--26281255 Score: 241
Period size: 80 Copynumber: 3.8 Consensus size: 79
26280946 GGATATTTCT
* *** * *
26280956 GTAATTTTGTAAATCAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAA
1 GTAATTTTGTAAATGAGGGTAAAATGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAA
* * ***
26281021 ACCAGTGGTATTTCG
66 TCGAG-GGTAAAACG
* *** * *
26281036 GTAATTTT-AAAACT-AGGGGTATTTTGGTAATTTTACAAA-CTAAGGGTATTTTGGTAATTTCA
1 GTAATTTTGTAAA-TGA-GGGTAAAATGGTAATTTTACAAATC-GAGGGTATTTCGGTAATTTCA
26281098 CAATCGAGGGTAAAACG
63 CAATCGAGGGTAAAACG
* ***
26281115 GTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAA-TTCTAT
1 GTAATTTTGTAAA-TGAGGGTAAAATGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTC-A-
* *
26281179 AAATCGAGGGT-GAACG
63 CAATCGAGGGTAAAACG
* * * * *
26281195 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGCATTTCAGTAATTT
1 GTAATTTTGTAAAT-GAGGGTAAAATGGTAATTTTACAAATCGAGGGTATTTCGGTAATTT
26281256 GGTAAACTAA
Statistics
Matches: 181, Mismatches: 29, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
79 22 0.12
80 145 0.80
81 14 0.08
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (79 bp):
GTAATTTTGTAAATGAGGGTAAAATGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAA
TCGAGGGTAAAACG
Found at i:26281236 original size:53 final size:54
Alignment explanation
Indices: 26281099--26281241 Score: 200
Period size: 53 Copynumber: 2.7 Consensus size: 54
26281089 GTAATTTCAC
* * * *
26281099 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTATA
*
26281153 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGT-GAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
* *
26281206 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGG
26281242 CATTTCAGTA
Statistics
Matches: 81, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 47 0.58
54 33 0.41
55 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.27
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
Found at i:26283781 original size:25 final size:25
Alignment explanation
Indices: 26283753--26283822 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
26283743 CTCTTTTAAT
26283753 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
26283778 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
26283803 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
26283823 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:26284682 original size:26 final size:27
Alignment explanation
Indices: 26284630--26284685 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
26284620 GGGCATATTC
*
26284630 GTCATTTTACCATACAAGGGTATTACG
1 GTCACTTTACCATACAAGGGTATTACG
*
26284657 GTCACTTTACCCTAC-AGGGCT-TTACG
1 GTCACTTTACCATACAAGGG-TATTACG
26284683 GTC
1 GTC
26284686 TTTTTACCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAAGGGTATTACG
Found at i:26284691 original size:26 final size:27
Alignment explanation
Indices: 26284630--26284693 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
26284620 GGGCATATTC
26284630 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCATACAAGGGTATTACG
* *
26284657 GTCACTTTACCCTAC-AGGGCT-TTACG
1 GTCATTTTACCATACAAGGG-TATTACG
*
26284683 GTCTTTTTACC
1 GTCATTTTACC
26284694 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 18 0.56
27 14 0.44
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTACG
Found at i:26284777 original size:27 final size:27
Alignment explanation
Indices: 26284747--26284854 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
26284737 GTAAATCTAC
26284747 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
26284774 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
26284800 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
26284830 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
26284855 ACAAATTGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 41 0.60
28 7 0.10
29 18 0.26
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:26284852 original size:56 final size:55
Alignment explanation
Indices: 26284744--26284912 Score: 175
Period size: 53 Copynumber: 3.1 Consensus size: 55
26284734 TTGGTAAATC
* * *
26284744 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTT-TGGTAATTTT
* * * *
26284799 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
** * ***
26284854 TACAAATTGA-GGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
26284907 TACAAA
1 TACAAA
26284913 CTAGGGGTAT
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
53 43 0.45
54 2 0.02
55 14 0.15
56 37 0.39
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.40
Consensus pattern (55 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
Found at i:26284860 original size:27 final size:27
Alignment explanation
Indices: 26284796--26284932 Score: 136
Period size: 27 Copynumber: 5.1 Consensus size: 27
26284786 TTTCTATAAT
* *
26284796 TTTTAGAAAGTCAAGGGTATTTCT-GTAA
1 TTTTACAAA-TCAGGGGTATTT-TGGTAA
**
26284824 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
26284851 TTTTACAAAT-TGAGGTATTTCGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
26284877 TTTCACAAACCAGTGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
26284904 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
26284931 TT
1 TT
26284933 CTATCTACAG
Statistics
Matches: 91, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
26 23 0.25
27 61 0.67
28 7 0.08
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:26284895 original size:53 final size:54
Alignment explanation
Indices: 26284811--26284932 Score: 156
Period size: 53 Copynumber: 2.3 Consensus size: 54
26284801 GAAAGTCAAG
* *** * *
26284811 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTGA
1 GGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGA
* *
26284864 GGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGA
*
26284918 GGTATTTTGGTAATT
1 GGTATTTCGGTAATT
26284933 CTATCTACAG
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 43 0.73
54 16 0.27
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (54 bp):
GGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGA
Found at i:26284997 original size:27 final size:27
Alignment explanation
Indices: 26284963--26285054 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
26284953 GTAATTTCAC
26284963 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTA
* *
26284990 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGATAATTTTGTA
* * *
26285017 AATCGAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTA
26285044 AATCGAGGGTA
1 AATCGAGGGTA
26285055 CTTTGGTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTTTGTA
Found at i:26285077 original size:54 final size:53
Alignment explanation
Indices: 26284953--26285079 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
26284943 GGGTATTTCA
* * * *
26284953 GTAATTTCACAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAATCGAGGGTAAAACAATAATTCTATAAACTGAGGGTAAAATG
***
26285006 GTAATTTTGTA-AATCGAGGGTAAAACAATAATTCTATAAA-TCGAGGGTACTTTG
1 GTAA-TTT-TACAATCGAGGGTAAAACAATAATTCTATAAACT-GAGGGTAAAATG
26285060 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAA-TCGAGGG
26285080 CATTTCAATA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
52 2 0.03
53 10 0.16
54 49 0.79
55 1 0.02
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.31
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAACAATAATTCTATAAACTGAGGGTAAAATG
Found at i:26291982 original size:27 final size:26
Alignment explanation
Indices: 26291877--26292000 Score: 189
Period size: 26 Copynumber: 4.8 Consensus size: 26
26291867 CCTCTTTAAT
**
26291877 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
26291902 AACTAGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
26291927 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
26291953 AACTGGGGCATAAGCCCTTTTTCAATA
1 AACTGGGGCATAAGCCC-TTTTCAATA
26291980 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
26292001 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
25 32 0.34
26 35 0.38
27 26 0.28
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:26292072 original size:9 final size:9
Alignment explanation
Indices: 26292058--26292106 Score: 53
Period size: 9 Copynumber: 5.0 Consensus size: 9
26292048 ACATCATGTG
26292058 CATATCATA
1 CATATCATA
*
26292067 CATATCAAGTG
1 CATATC-A-TA
26292078 CATATCATA
1 CATATCATA
26292087 CATATCATGA
1 CATATCAT-A
26292097 GCATATCATA
1 -CATATCATA
26292107 TCAATAATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
9 15 0.44
10 4 0.12
11 15 0.44
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (9 bp):
CATATCATA
Found at i:26292078 original size:20 final size:20
Alignment explanation
Indices: 26292050--26292106 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
26292040 TTATGAATAC
26292050 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
26292070 ATCAAGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
26292090 ATCATGAGCATATCATA
1 ATCATGTGCATATCATA
26292107 TCAATAATGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.32
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:26292101 original size:11 final size:11
Alignment explanation
Indices: 26292050--26292105 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
26292040 TTATGAATAC
*
26292050 ATCATGTGCAT
1 ATCATGAGCAT
26292061 ATCAT-A-CAT
1 ATCATGAGCAT
* *
26292070 ATCAAGTGCAT
1 ATCATGAGCAT
26292081 ATCAT-A-CAT
1 ATCATGAGCAT
26292090 ATCATGAGCAT
1 ATCATGAGCAT
26292101 ATCAT
1 ATCAT
26292106 ATCAATAATG
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 15 0.42
10 1 0.03
11 20 0.56
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (11 bp):
ATCATGAGCAT
Found at i:26296860 original size:26 final size:26
Alignment explanation
Indices: 26296797--26296948 Score: 216
Period size: 26 Copynumber: 5.9 Consensus size: 26
26296787 TCCCTTTCGG
* *
26296797 TAAACTGAGGCGTAAGCCCTTTT-AA
1 TAAACTGGGGCATAAGCCCTTTTCAA
***
26296822 TAAACTGGGGCATAAGCCCTTTTTGG
1 TAAACTGGGGCATAAGCCCTTTTCAA
* * *
26296848 TAAATTGGAGCATAAGCCCTTTCCAA
1 TAAACTGGGGCATAAGCCCTTTTCAA
26296874 TAAACTGGGGCATAAGCCCTTTTCAA
1 TAAACTGGGGCATAAGCCCTTTTCAA
*
26296900 TAAACTGGGGCATAAGCCCTTTCCAA
1 TAAACTGGGGCATAAGCCCTTTTCAA
26296926 TAAACTGGGGCATAAGCCCTTTT
1 TAAACTGGGGCATAAGCCCTTTT
26296949 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
25 21 0.19
26 90 0.81
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
TAAACTGGGGCATAAGCCCTTTTCAA
Found at i:26297909 original size:27 final size:27
Alignment explanation
Indices: 26297877--26297973 Score: 90
Period size: 27 Copynumber: 3.5 Consensus size: 27
26297867 GTAAATCTAC
26297877 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
26297904 ACACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
** *
26297930 AGAAAGTTAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
*
26297960 AAATCAAGGGTATT
1 AAACCAAGGGTATT
26297974 ATGGTAATTT
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
26 1 0.02
27 31 0.55
28 6 0.11
29 17 0.30
30 1 0.02
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:26297980 original size:27 final size:27
Alignment explanation
Indices: 26297950--26298016 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
26297940 GGGTATTTCT
**
26297950 GTAATTTTGTAAATCAAGGGTATTATG
1 GTAATTTTACAAATCAAGGGTATTATG
** *
26297977 GTAATTTTACAAATTGAGGGTATTTTG
1 GTAATTTTACAAATCAAGGGTATTATG
*
26298004 GTAATTTCACAAA
1 GTAATTTTACAAA
26298017 CCAGTAGTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.34, C:0.06, G:0.19, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCAAGGGTATTATG
Found at i:26297982 original size:56 final size:54
Alignment explanation
Indices: 26297882--26298010 Score: 136
Period size: 56 Copynumber: 2.4 Consensus size: 54
26297872 TCTACAAACC
* * * * *
26297882 AAGGGTATTTCAGTAATTTTGTACACCAATGGTATTTCTATAATTTTTAGAAAGTT
1 AAGGGTATTTCTGTAATTTTGTAAACCAAGGGTATTTCGATAA-TTTTACAAA-TT
* *
26297938 AAGGGTATTTCTGTAATTTTGTAAATCAAGGGTATTAT-GGTAATTTTACAAATT
1 AAGGGTATTTCTGTAATTTTGTAAACCAAGGGTATT-TCGATAATTTTACAAATT
*
26297992 GAGGGTATTT-TGGTAATTT
1 AAGGGTATTTCT-GTAATTT
26298011 CACAAACCAG
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
53 1 0.02
54 18 0.29
55 8 0.13
56 35 0.56
57 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.43
Consensus pattern (54 bp):
AAGGGTATTTCTGTAATTTTGTAAACCAAGGGTATTTCGATAATTTTACAAATT
Found at i:26300061 original size:6 final size:6
Alignment explanation
Indices: 26300009--26300114 Score: 74
Period size: 6 Copynumber: 17.3 Consensus size: 6
26299999 AAGAAACATT
* * * * *
26300009 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAAA ATCAAA ATCAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
26300057 ATCAGA ATTAGGTA A-CAGA ATCAGA ATCAGT ATCAAGTA A-CAGA ATCAAA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA
26300107 ATCAGA AT
1 ATCAGA AT
26300115 GTGAATGCAA
Statistics
Matches: 80, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
5 5 0.06
6 66 0.82
7 6 0.08
8 3 0.04
ACGTcount: A:0.54, C:0.14, G:0.13, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:26300081 original size:25 final size:25
Alignment explanation
Indices: 26300050--26300114 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
26300040 TCAAAATCAA
* *
26300050 AATCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAAGTAACAG
*
26300075 AATCAGAATCAGTATCAAGTAACAG
1 AATCAGAATCAGAATCAAGTAACAG
*
26300100 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
26300115 GTGAATGCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.20
Consensus pattern (25 bp):
AATCAGAATCAGAATCAAGTAACAG
Found at i:26300281 original size:27 final size:26
Alignment explanation
Indices: 26300233--26300290 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
26300223 GCGAGGCTAC
*
26300233 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
26300260 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
26300286 CAGAT
1 CAGAT
26300291 GCATATATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:26300304 original size:33 final size:32
Alignment explanation
Indices: 26300254--26300317 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
26300244 ACGAAGTCAC
* *
26300254 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
26300286 CAGATGCATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
26300318 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:26300592 original size:27 final size:27
Alignment explanation
Indices: 26300562--26300786 Score: 224
Period size: 27 Copynumber: 8.3 Consensus size: 27
26300552 GGGGTAAAAT
* *
26300562 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
26300589 GGTAATTCTACCCTACAGGGGTATTTTT
1 GGTAATTTTACCCTACAAGGGTA-TTTC
* *
26300617 AGTAATTCTACCCTAC-AGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
26300643 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
26300670 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
26300697 AGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
26300724 GGT-ATTTCTACCCTACAGGGGTGTTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
26300751 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
26300778 GATAATTTT
1 GGTAATTTT
26300787 GTAAATCGAG
Statistics
Matches: 167, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
25 3 0.02
26 16 0.10
27 124 0.74
28 24 0.14
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:26300662 original size:81 final size:82
Alignment explanation
Indices: 26300566--26300776 Score: 311
Period size: 81 Copynumber: 2.6 Consensus size: 82
26300556 TAAAATGGTA
* *
26300566 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTTAGTAATTCTACCC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTTAGTAATTCTACCC
26300630 TACA-GGGTATTTCGAT
66 TACAGGGGTATTTCGAT
* *
26300646 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTA-TTTTAGTAATTTTACCC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTTAGTAATTCTACCC
* *
26300710 TATAGGGGTATTTCGGT
66 TACAGGGGTATTTCGAT
* * * *
26300727 ATTTCTACCCTACAGGGGTGTTTCGGTATTTCTACCCTACAAGGGTATTT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
26300777 CGATAATTTT
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
80 23 0.20
81 92 0.79
82 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (82 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTTAGTAATTCTACCC
TACAGGGGTATTTCGAT
Found at i:26300777 original size:54 final size:54
Alignment explanation
Indices: 26300562--26300784 Score: 261
Period size: 54 Copynumber: 4.1 Consensus size: 54
26300552 GGGGTAAAAT
* * * * * * *
26300562 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTA-TTTC
* *
26300617 AGTAATTCTACCCTACA-GGGTATTTCGATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* ** * *
26300670 GATAATTCTACCCTACAGGGGTATTTTAGTAATTT-TACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGT-ATTTCTACCCTACAAGGGTATTTC
* *
26300724 GGTATTTCTACCCTACAGGGGTGTTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
*
26300778 GATAATT
1 GGTAATT
26300785 TTGTAAATCG
Statistics
Matches: 141, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
53 22 0.16
54 101 0.72
55 18 0.13
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
Found at i:26300853 original size:27 final size:27
Alignment explanation
Indices: 26300836--26300898 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
26300826 TACTTTGGTC
26300836 ATTTTACAAGTCGAGGGTATTTCAATA
1 ATTTTACAAGTCGAGGGTATTTCAATA
* *
26300863 ATTTTACAGGTCGAGGGTATTTCAGTA
1 ATTTTACAAGTCGAGGGTATTTCAATA
*
26300890 ATTTCACAA
1 ATTTTACAA
26300899 ATTAGGGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.37
Consensus pattern (27 bp):
ATTTTACAAGTCGAGGGTATTTCAATA
Found at i:26300877 original size:81 final size:81
Alignment explanation
Indices: 26300768--26300925 Score: 183
Period size: 81 Copynumber: 2.0 Consensus size: 81
26300758 CTACCCTACA
* ** **
26300768 AGGGTATTTCGATAATTTTGTAAATCGAGGGTAAAACAGTAA-TTCTGTAAATCAGGGGTACTTT
1 AGGGTATTTCAATAATTTTACAAATCGAGGGTAAAACAGTAATTTC-ACAAATCAGGGGTACTTT
*
26300832 GGTCATTTTACAAGTCG
65 GGTAATTTTACAAGTCG
** *** * *
26300849 AGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTG
1 AGGGTATTTCAATAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTG
26300914 GTAATTTTACAA
66 GTAATTTTACAA
26300926 ACTAGGGGTA
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
81 60 0.95
82 3 0.05
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (81 bp):
AGGGTATTTCAATAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTG
GTAATTTTACAAGTCG
Found at i:26300907 original size:27 final size:27
Alignment explanation
Indices: 26300877--26301205 Score: 370
Period size: 27 Copynumber: 12.2 Consensus size: 27
26300867 TACAGGTCGA
** * *
26300877 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
26300904 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
26300931 GGGTATTATGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
26300958 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
26300985 TGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
26301012 AGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
** * *
26301039 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
26301066 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * * * *
26301093 AGGTATTTTGGTGATTTTATAGACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
26301120 GGGTATTCTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
** * *
26301147 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
26301174 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
26301201 GGGTA
1 GGGTA
26301206 AATGGATGAG
Statistics
Matches: 252, Mismatches: 50, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 252 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:26300935 original size:81 final size:81
Alignment explanation
Indices: 26300820--26301205 Score: 366
Period size: 81 Copynumber: 4.8 Consensus size: 81
26300810 TTCTGTAAAT
* * ** * * ** *
26300820 CAGGGGTACTTTGGTCATTTTACAAGTC-GAGGGTATTTCAATAATTTTAC-AGGTCGAGGGTAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAGTAATTTTACAAACTAG-GGGTAT
* *
26300883 TTCAGTAATTTCACAAAT
64 TTCAGTAATTTTACAAAC
* * *
26300901 TAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTAT-GATAATTTTACAAACTAGGGGTATT
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAG-TAATTTTACAAACTAGGGGTATT
**
26300965 TTGGTAATTTTACAAAC
65 TCAGTAATTTTACAAAC
* * * **
26300982 CAGTGGTATTTTGGTAATTTTATAAACAAAAGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
** **
26301047 TGGTAATTTTGTAAAC
66 CAGTAATTTTACAAAC
* * * * * * * *
26301063 CAAGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGGTGATTTTATAGACCAAGGGTA-TT
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
26301127 CTAGTAATTTTACAAAC
66 C-AGTAATTTTACAAAC
* ** * *
26301144 TAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTA
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTA
26301206 AATGGATGAG
Statistics
Matches: 249, Mismatches: 51, Indels: 10
0.80 0.16 0.03
Matches are distributed among these distances:
80 2 0.01
81 242 0.97
82 5 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
CAGTAATTTTACAAAC
Found at i:26301070 original size:108 final size:108
Alignment explanation
Indices: 26300905--26301205 Score: 467
Period size: 108 Copynumber: 2.8 Consensus size: 108
26300895 ACAAATTAGG
* * * ** * *
26300905 GGTATTTTGGTAATTTTACAAACTAGGGGTATTATGATAATTTTACAAACTAGGGGTATTTTGGT
1 GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGT
*
26300970 AATTTTACAAACCAGTGGTATTTTGGTAATTTTATAAACAAAA
66 AATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACAAAA
26301013 GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGT
1 GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGT
* * * *
26301078 AATTTTACAAACCAGAGGTATTTTGGTGATTTTATAGACCAAG
66 AATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACAAAA
* *
26301121 GGTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGT
1 GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGT
*
26301186 AATTTTACAAACCAGGGGTA
66 AATTTTACAAACCAGAGGTA
26301206 AATGGATGAG
Statistics
Matches: 178, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 178 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (108 bp):
GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGT
AATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACAAAA
Found at i:26302034 original size:27 final size:27
Alignment explanation
Indices: 26301976--26302453 Score: 252
Period size: 27 Copynumber: 17.7 Consensus size: 27
26301966 TTAGTTTACC
* * * * *
26301976 AAATTACTGAAATGCCCTCAAATTGTA
1 AAATTACTAAAATACCCTCGATTTATA
*
26302003 AAATTACCAAAATACCCTCGATTTATA
1 AAATTACTAAAATACCCTCGATTTATA
* *****
26302030 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACTAAAATACCCTCGATTTATA
* **** * * *
26302057 GAATTACTGTTTTACTCTTGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
*** *
26302084 AAATTACTATTTTACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
*** *
26302111 AAATTACTATTTTACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* * * *
26302138 AAATTACTAAAACACCCTTGGTTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* *
26302165 AAATTACCAAAATACCCTCGA-TCAGTA
1 AAATTACTAAAATACCCTCGATTTA-TA
* * *
26302192 AAATTACTAAAATACCCTAG-TCTGTA
1 AAATTACTAAAATACCCTCGATTTATA
* *
26302218 AAATTACTAAAATACCC-CTAGTTTGTA
1 AAATTACTAAAATACCCTCGA-TTTATA
* *
26302245 AAATTACTAAAATACCC-CTAGTTTGTA
1 AAATTACTAAAATACCCTCGA-TTTATA
* *
26302272 AAATTACTAAAATACCC-CTAGTTTGTA
1 AAATTACTAAAATACCCTCGA-TTTATA
* * * *
26302299 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACTAAAATACC-CTCGATTTATA
** * *
26302326 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTATA
* *
26302353 AAATTACCAAAATACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* * * *
26302380 AAGTTAC-AGAAATACCTTTGACTTTCTAA
1 AAATTACTA-AAATACCCTCGA-TTTAT-A
* * * *
26302409 AAATTA-TAGAAATACCATTGGTTTACA
1 AAATTACTA-AAATACCCTCGATTTATA
* *
26302436 AAATTATTGAAATACCCT
1 AAATTACTAAAATACCCT
26302454 TGGTTTGTAG
Statistics
Matches: 376, Mismatches: 63, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
26 24 0.06
27 326 0.87
28 8 0.02
29 18 0.05
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTATA
Found at i:26302456 original size:27 final size:27
Alignment explanation
Indices: 26302408--26302459 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
26302398 TGACTTTCTA
26302408 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
* *
26302435 AAAATTATTGAAATACCCTTGGTTT
1 AAAATTATAGAAATACCATTGGTTT
26302460 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:26302589 original size:27 final size:27
Alignment explanation
Indices: 26302521--26302582 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
26302511 TAGGTAAAAA
*
26302521 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCTTGTAGGGTAAAGT
*
26302548 GACTGTAAAGCCCTTGTAGGGTAAAGT
1 GACCGTAAAGCCCTTGTAGGGTAAAGT
26302575 GACCGTAA
1 GACCGTAA
26302583 TACCCTTATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (27 bp):
GACCGTAAAGCCCTTGTAGGGTAAAGT
Found at i:26303583 original size:25 final size:25
Alignment explanation
Indices: 26303545--26303639 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
26303535 AGGAAGTGCT
*
26303545 AAAAGGGCTATGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
*
26303570 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
*
26303595 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCG
* *
26303620 AAAAGCGCTTTCCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
26303640 ATTAAAGGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCG
Found at i:26303845 original size:42 final size:42
Alignment explanation
Indices: 26303786--26303877 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
26303776 TAGTCTCCCC
* *
26303786 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTA
*
26303828 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTA
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTA
26303870 AAATGGGC
1 AAATGGGC
26303878 CTATGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTA
Found at i:26305812 original size:31 final size:30
Alignment explanation
Indices: 26305776--26305855 Score: 124
Period size: 30 Copynumber: 2.6 Consensus size: 30
26305766 TTTAACGGTT
26305776 ACTGGGCCGAAGCTTTTTCATAAAGCATATC
1 ACTGGGCCGAAGC-TTTTCATAAAGCATATC
* *
26305807 ACTGGGCCGAAGCATTTCATAAATCATATC
1 ACTGGGCCGAAGCTTTTCATAAAGCATATC
26305837 ACTGGGCCGAAGCCTTTTC
1 ACTGGGCCGAAG-CTTTTC
26305856 TGTAAACCGT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
30 27 0.60
31 18 0.40
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (30 bp):
ACTGGGCCGAAGCTTTTCATAAAGCATATC
Found at i:26305924 original size:42 final size:42
Alignment explanation
Indices: 26305877--26305968 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
26305867 TGGCCCTTAG
26305877 GCCCATTTCAATATCACATGTAATGTCAATAAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATAAATGTATGCAA
*
26305919 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATAAATGTATGCAA
26305961 GCCCATTT
1 GCCCATTT
26305969 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATAAATGTATGCAA
Found at i:26307064 original size:27 final size:26
Alignment explanation
Indices: 26307034--26307089 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
26307024 GTAAATCTAC
26307034 AAACCAAGGGCATTTC-AGTAATTTTGT
1 AAACCAAGGGCATTTCTA-TAATTTT-T
* *
26307061 AAACCAATGGTATTTCTATAATTTTT
1 AAACCAAGGGCATTTCTATAATTTTT
26307087 AAA
1 AAA
26307090 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (26 bp):
AAACCAAGGGCATTTCTATAATTTTT
Found at i:26307137 original size:27 final size:27
Alignment explanation
Indices: 26307097--26307253 Score: 183
Period size: 27 Copynumber: 5.8 Consensus size: 27
26307087 AAAAAGTCAA
** *
26307097 GGGTATTTAT-GTAATTTTTTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
*
26307124 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
26307150 AGGGTATTTTGGTAATTTCACAAACCAT
1 -GGGTATTTTGGTAATTTTACAAACTAG
* *
26307178 TGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
26307205 GGGTATTTTGTTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
26307232 GGGTATTTTGGTAATTTAACAA
1 GGGTATTTTGGTAATTTTACAA
26307254 TCGAGGGTAA
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
26 3 0.03
27 107 0.97
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Done.