Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 92 of 425
Found at i:26660314 original size:25 final size:24
Alignment explanation
Indices: 26660286--26660332 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
26660276 AGAAAATGGG
26660286 TTAAAAACTATAATAGAATAAAATT
1 TTAAAAACTA-AATAGAATAAAATT
** *
26660311 TTAAGTACTAAATTGAATAAAA
1 TTAAAAACTAAATAGAATAAAA
26660333 AGAATTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.32
Consensus pattern (24 bp):
TTAAAAACTAAATAGAATAAAATT
Found at i:26660852 original size:27 final size:27
Alignment explanation
Indices: 26660814--26660877 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
26660804 AGGTTTTAGG
* *
26660814 TAGGCAGCACTAGTTGTGCCTACCTGA
1 TAGGCGGCACTAGTTGTGCCTACCTAA
*
26660841 TAGGCGGCACTAGTTGTGCCTATCTAA
1 TAGGCGGCACTAGTTGTGCCTACCTAA
26660868 TAGGCGGCAC
1 TAGGCGGCAC
26660878 ACCCAGTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (27 bp):
TAGGCGGCACTAGTTGTGCCTACCTAA
Found at i:26661049 original size:14 final size:14
Alignment explanation
Indices: 26661030--26661058 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26661020 TAATGTATTT
26661030 AATTTATATTACAA
1 AATTTATATTACAA
26661044 AATTTATATTACAA
1 AATTTATATTACAA
26661058 A
1 A
26661059 GTTTGTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:26661099 original size:64 final size:62
Alignment explanation
Indices: 26661030--26661237 Score: 167
Period size: 64 Copynumber: 3.3 Consensus size: 62
26661020 TAATGTATTT
26661030 AATTTATATTACAAAATTTATATTACAAAGTTTGTTTTAATTATGTATTTAATTTATATTACAA
1 AATTTATATTACAAAATTT-TATT-CAAAGTTTGTTTTAATTATGTATTTAATTTATATTACAA
* * ** * *
26661094 AATTTATATAACAAAGTTTGCTCCAATT-AAA-TTAATGTT-ATAATGTATTTAATTTATATTAC
1 AATTTATATTACAAAATTT--T---ATTCAAAGTTTGTTTTAATTATGTATTTAATTTATATTAC
26661156 AA
61 AA
* ** * *
26661158 AATTTATATTACAAAGTTTGCTCCAATTAGATTAATGTTATAA-T-T-TATTTAATTTATATTAC
1 AATTTATATTACAAAATTTTATTCAA--AG-TT--TGTTTTAATTATGTATTTAATTTATATTAC
26661220 AA
61 AA
26661222 AATTTATATTACAAAA
1 AATTTATATTACAAAA
26661238 CTAAGTTTGT
Statistics
Matches: 115, Mismatches: 17, Indels: 24
0.74 0.11 0.15
Matches are distributed among these distances:
59 1 0.01
60 2 0.02
62 1 0.01
64 95 0.83
65 7 0.06
66 5 0.04
67 1 0.01
68 3 0.03
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.46
Consensus pattern (62 bp):
AATTTATATTACAAAATTTTATTCAAAGTTTGTTTTAATTATGTATTTAATTTATATTACAA
Found at i:26661122 original size:50 final size:50
Alignment explanation
Indices: 26661022--26661122 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 50
26661012 TAATGTTGTA
* * **
26661022 ATGTATTTAATTTATATTACAAAATTTATATTACAAAGTTTGTTTTAATT
1 ATGTATTTAATTTATATTACAAAATTTATATAACAAAGTTTGCTCCAATT
26661072 ATGTATTTAATTTATATTACAAAATTTATATAACAAAGTTTGCTCCAATT
1 ATGTATTTAATTTATATTACAAAATTTATATAACAAAGTTTGCTCCAATT
26661122 A
1 A
26661123 AATTAATGTT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.40, C:0.07, G:0.06, T:0.48
Consensus pattern (50 bp):
ATGTATTTAATTTATATTACAAAATTTATATAACAAAGTTTGCTCCAATT
Found at i:26661156 original size:114 final size:113
Alignment explanation
Indices: 26660966--26661177 Score: 361
Period size: 114 Copynumber: 1.9 Consensus size: 113
26660956 TCAGCTTATG
* * * *
26660966 TAATTTATATAACAAAATTTATATTCAAAGCTTGTTCCAATTAGATTAATGTTGTAATGTATTTA
1 TAATTTATATAACAAAATTTATATACAAAGCTTGCTCCAATTAAATTAATGTTATAATGTATTTA
26661031 ATTTATATTACAAAATTTATATTACAAAGTTTGTTTTAATTATGTATT
66 ATTTATATTACAAAATTTATATTACAAAGTTTGTTTTAATTATGTATT
* *
26661079 TAATTTATATTACAAAATTTATATAACAAAGTTTGCTCCAATTAAATTAATGTTATAATGTATTT
1 TAATTTATATAACAAAATTTATAT-ACAAAGCTTGCTCCAATTAAATTAATGTTATAATGTATTT
26661144 AATTTATATTACAAAATTTATATTACAAAGTTTG
65 AATTTATATTACAAAATTTATATTACAAAGTTTG
26661178 CTCCAATTAG
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
113 23 0.25
114 69 0.75
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.46
Consensus pattern (113 bp):
TAATTTATATAACAAAATTTATATACAAAGCTTGCTCCAATTAAATTAATGTTATAATGTATTTA
ATTTATATTACAAAATTTATATTACAAAGTTTGTTTTAATTATGTATT
Found at i:26661163 original size:14 final size:14
Alignment explanation
Indices: 26661144--26661172 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26661134 TAATGTATTT
26661144 AATTTATATTACAA
1 AATTTATATTACAA
26661158 AATTTATATTACAA
1 AATTTATATTACAA
26661172 A
1 A
26661173 GTTTGCTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:26661227 original size:14 final size:14
Alignment explanation
Indices: 26661208--26661237 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
26661198 TAATTTATTT
26661208 AATTTATATTACAA
1 AATTTATATTACAA
26661222 AATTTATATTACAA
1 AATTTATATTACAA
26661236 AA
1 AA
26661238 CTAAGTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:26661641 original size:33 final size:33
Alignment explanation
Indices: 26661604--26661718 Score: 97
Period size: 33 Copynumber: 3.5 Consensus size: 33
26661594 GAAGGACTAT
* *
26661604 CATACTGCGGTGGATACAAGCCGAAAGGAGTGC
1 CATACTACGGTGGATACAGGCCGAAAGGAGTGC
* * * * * *
26661637 CATACTACAGTGAATTCGGGCTGAGAGGAGTGC
1 CATACTACGGTGGATACAGGCCGAAAGGAGTGC
* *
26661670 CATACTATGGTGGATACAGGCC-AAGAGGAATGC
1 CATACTACGGTGGATACAGGCCGAA-AGGAGTGC
* * *
26661703 TACACTGCGGTGGATA
1 CATACTACGGTGGATA
26661719 TGATCTAAAT
Statistics
Matches: 61, Mismatches: 20, Indels: 2
0.73 0.24 0.02
Matches are distributed among these distances:
32 1 0.02
33 60 0.98
ACGTcount: A:0.30, C:0.19, G:0.32, T:0.19
Consensus pattern (33 bp):
CATACTACGGTGGATACAGGCCGAAAGGAGTGC
Found at i:26662572 original size:14 final size:14
Alignment explanation
Indices: 26662553--26662586 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
26662543 AAATTATATG
26662553 TTAGAATAGTATCA
1 TTAGAATAGTATCA
26662567 TTAGAATAGTATCA
1 TTAGAATAGTATCA
26662581 TTAGAA
1 TTAGAA
26662587 AAAAATGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (14 bp):
TTAGAATAGTATCA
Found at i:26664592 original size:15 final size:16
Alignment explanation
Indices: 26664555--26664599 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
26664545 TCCTCCTCCA
* *
26664555 TTTTCTTCTTCTTTTC
1 TTTTCTTCTCCTTCTC
26664571 TTTTCTTCTCCTTCTC
1 TTTTCTTCTCCTTCTC
26664587 -TTTCTTCTCCTTC
1 TTTTCTTCTCCTTC
26664600 ACTCACCAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTCTTCTCCTTCTC
Found at i:26667318 original size:30 final size:30
Alignment explanation
Indices: 26667282--26667342 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
26667272 TCCTCAACTC
26667282 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
26667312 AAACTTTTGTATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
26667342 A
1 A
26667343 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:26668227 original size:5 final size:5
Alignment explanation
Indices: 26668217--26668243 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26668207 TCCTCCACCA
26668217 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
26668244 TTAACTGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:26677790 original size:29 final size:27
Alignment explanation
Indices: 26677756--26677858 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
26677746 TACTCGATCA
*
26677756 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
26677785 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
26677814 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
26677843 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
26677859 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:26689577 original size:15 final size:16
Alignment explanation
Indices: 26689557--26689589 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
26689547 ATATATATTT
26689557 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
26689572 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
26689589 T
1 T
26689590 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:26689668 original size:21 final size:21
Alignment explanation
Indices: 26689638--26689701 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 21
26689628 TTAAGAATTG
*
26689638 TTTTAGTATTATTTTTATTTA
1 TTTTAATATTATTTTTATTTA
* *
26689659 TTTTAATATTTGTTTTTATGT-
1 TTTTAATA-TTATTTTTATTTA
*
26689680 TTTTAA-A-TATATTTGATTTA
1 TTTTAATATTAT-TTTTATTTA
26689700 TT
1 TT
26689702 ATATTTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
18 2 0.06
19 6 0.18
20 3 0.09
21 13 0.38
22 10 0.29
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAATATTATTTTTATTTA
Found at i:26689703 original size:26 final size:24
Alignment explanation
Indices: 26689664--26689712 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
26689654 ATTTATTTTA
*
26689664 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
26689688 ATATTTGATTTATTATATTTTTAAA
1 ATATTTG-TTT-TTATATTTTTAAA
26689713 CTTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:26698226 original size:26 final size:25
Alignment explanation
Indices: 26698186--26698244 Score: 93
Period size: 26 Copynumber: 2.4 Consensus size: 25
26698176 GTGAGCATTG
26698186 ATGT-AAAGAAAAGTTTATCGTTAT
1 ATGTAAAAGAAAAGTTTATCGTTAT
*
26698210 ATGTAAAAGTAAAAGTTTATGGTTAT
1 ATGTAAAAG-AAAAGTTTATCGTTAT
26698236 ATGTAAAAG
1 ATGTAAAAG
26698245 CACATTATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 4 0.12
26 24 0.75
ACGTcount: A:0.44, C:0.02, G:0.19, T:0.36
Consensus pattern (25 bp):
ATGTAAAAGAAAAGTTTATCGTTAT
Found at i:26699796 original size:20 final size:20
Alignment explanation
Indices: 26699768--26699848 Score: 63
Period size: 20 Copynumber: 3.9 Consensus size: 20
26699758 CTAGGAATTA
26699768 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* * *
26699788 TGTGGTCTGAGTTCATGATAT
1 TGTGATCTGAGCTCATGA-GT
* *
26699809 ATGTGATCTGAACTCATTAAGT
1 -TGTGATCTGAGCTCA-TGAGT
* * *
26699831 TGTGGTCTAAGTTCATGA
1 TGTGATCTGAGCTCATGA
26699849 TATATGTGAC
Statistics
Matches: 45, Mismatches: 13, Indels: 6
0.70 0.20 0.09
Matches are distributed among these distances:
20 18 0.40
21 12 0.27
22 13 0.29
23 2 0.04
ACGTcount: A:0.23, C:0.12, G:0.26, T:0.38
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:26699825 original size:42 final size:43
Alignment explanation
Indices: 26699766--26699857 Score: 150
Period size: 43 Copynumber: 2.2 Consensus size: 43
26699756 CACTAGGAAT
* * *
26699766 TATGTGATCTGAGCTCA-TGAGTTGTGGTCTGAGTTCATGATA
1 TATGTGATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATA
26699808 TATGTGATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATA
1 TATGTGATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATA
26699851 TATGTGA
1 TATGTGA
26699858 CACATGTTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 16 0.35
43 30 0.65
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (43 bp):
TATGTGATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATA
Found at i:26701184 original size:42 final size:42
Alignment explanation
Indices: 26701040--26701172 Score: 250
Period size: 42 Copynumber: 3.2 Consensus size: 42
26701030 AGAAATTGTC
*
26701040 CACACGGTTGGACACATGGGCATGTATCTAGGCTGTGTGTGA
1 CACACGGTTGGACACATGGGCATGTGTCTAGGCTGTGTGTGA
26701082 CACAC-GTTGGACACATGGGCATGTGTCTAGGCTGTGTGTGA
1 CACACGGTTGGACACATGGGCATGTGTCTAGGCTGTGTGTGA
26701123 CACACGGTTGGACACATGGGCATGTGTCTAGGCTGTGTGTGA
1 CACACGGTTGGACACATGGGCATGTGTCTAGGCTGTGTGTGA
26701165 CACACGGT
1 CACACGGT
26701173 CTGCCCTATG
Statistics
Matches: 89, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
41 40 0.45
42 49 0.55
ACGTcount: A:0.20, C:0.20, G:0.34, T:0.26
Consensus pattern (42 bp):
CACACGGTTGGACACATGGGCATGTGTCTAGGCTGTGTGTGA
Found at i:26712107 original size:20 final size:20
Alignment explanation
Indices: 26712068--26712110 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
26712058 CTGATGACTA
**
26712068 ATTATAACTATTCATTTAAT
1 ATTATAACTATTCAAATAAT
26712088 ATTATAACTATTCAAATAAT
1 ATTATAACTATTCAAATAAT
26712108 ATT
1 ATT
26712111 GTTTGAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTATAACTATTCAAATAAT
Found at i:26714222 original size:26 final size:26
Alignment explanation
Indices: 26714162--26714223 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
26714152 TTTAATTTTC
**
26714162 ATTATTTTCGACTAAGTTAAATTTAA
1 ATTATTTTTTACTAAGTTAAATTTAA
26714188 ATTATTTTTTACTAAGTTAAATTTAA
1 ATTATTTTTTACTAAGTTAAATTTAA
26714214 ATTATTTTTT
1 ATTATTTTTT
26714224 CGTTATAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (26 bp):
ATTATTTTTTACTAAGTTAAATTTAA
Found at i:26717721 original size:18 final size:19
Alignment explanation
Indices: 26717693--26717728 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
26717683 AGTACCTAAA
26717693 CAGTAATCAGTAACGGTAG
1 CAGTAATCAGTAACGGTAG
26717712 CAGTAA-CAGTAACGGTA
1 CAGTAATCAGTAACGGTA
26717729 TTCAACACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.39, C:0.17, G:0.25, T:0.19
Consensus pattern (19 bp):
CAGTAATCAGTAACGGTAG
Found at i:26717775 original size:45 final size:44
Alignment explanation
Indices: 26717706--26717818 Score: 127
Period size: 45 Copynumber: 2.5 Consensus size: 44
26717696 TAATCAGTAA
* * *
26717706 CGGTAGCAGTAACAGTAACGGTATTCAACACACAAAGTGTTAAAT
1 CGGTAACAGTAACA-TAACAGTATTCAACACACAAAGTGTCAAAT
** * *
26717751 TTGTAACAGTAACTATAACAGTATTCGACACACAAAGTGTCGAAT
1 CGGTAACAGTAAC-ATAACAGTATTCAACACACAAAGTGTCAAAT
*
26717796 CGGTAACAGTAACGGTAACAGTA
1 CGGTAACAGTAAC-ATAACAGTA
26717819 ACAGTAGTTG
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 55 0.98
46 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (44 bp):
CGGTAACAGTAACATAACAGTATTCAACACACAAAGTGTCAAAT
Found at i:26717813 original size:12 final size:12
Alignment explanation
Indices: 26717796--26717820 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26717786 AGTGTCGAAT
26717796 CGGTAACAGTAA
1 CGGTAACAGTAA
26717808 CGGTAACAGTAA
1 CGGTAACAGTAA
26717820 C
1 C
26717821 AGTAGTTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:26719236 original size:25 final size:23
Alignment explanation
Indices: 26719192--26719252 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
26719182 ATTTTGATTT
*
26719192 ATTTAATAATATAATATCATTATA
1 ATTTAATTATATAATATCA-TATA
26719216 ATTTAATTATCATAA-ATTCATATA
1 ATTTAATTAT-ATAATA-TCATATA
*
26719240 ATATAAATTATAT
1 AT-TTAATTATAT
26719253 TTAAATATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 18 0.56
25 14 0.44
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTTAATTATATAATATCATATA
Found at i:26719255 original size:35 final size:35
Alignment explanation
Indices: 26719200--26719279 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 35
26719190 TTATTTAATA
* *
26719200 ATATAATAT-CATTATAATTTAATTATCATAAATT
1 ATATAATATAAATTATAATTTAAATATCATAAATT
*
26719234 CATATAATATAAATTAT-ATTTAAATATCATTAATT
1 -ATATAATATAAATTATAATTTAAATATCATAAATT
26719269 ATATAAT-TAAA
1 ATATAATATAAA
26719280 ACAAATAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
33 4 0.10
34 7 0.17
35 25 0.61
36 5 0.12
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (35 bp):
ATATAATATAAATTATAATTTAAATATCATAAATT
Found at i:26721165 original size:49 final size:47
Alignment explanation
Indices: 26721050--26721219 Score: 184
Period size: 49 Copynumber: 3.6 Consensus size: 47
26721040 CAATGACAAC
* * * *
26721050 GCCATGTTCCAAACATGGTCTTACACTGGCTCTCACATCTAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTAGCTCTCACATCTAAGTCAAT
* *
26721098 GCCATGTCCCAGATAGGTCTTACACTAGCTCTCACTTATCTATGTCAAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTCTCAC--ATCTAAGTCAAT
* * * * *
26721147 GCCATGTCCTAGACAGGTCTTACACTA-AT-ACACCTC-AAGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTCTCACATCTAAGTCAAT
*
26721191 GCCATGTTCCAGACAGGTCTTACACTAGC
1 GCCATGTCCCAGACAGGTCTTACACTAGC
26721220 ACACACGTCA
Statistics
Matches: 103, Mismatches: 16, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
44 31 0.30
45 2 0.02
47 22 0.21
48 13 0.13
49 35 0.34
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (47 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTCTCACATCTAAGTCAAT
Found at i:26721401 original size:16 final size:16
Alignment explanation
Indices: 26721380--26721411 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26721370 AAGTTATATT
26721380 ATTTACGTACAACTTA
1 ATTTACGTACAACTTA
*
26721396 ATTTACGTATAACTTA
1 ATTTACGTACAACTTA
26721412 CCTCGGTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.41
Consensus pattern (16 bp):
ATTTACGTACAACTTA
Found at i:26723422 original size:18 final size:18
Alignment explanation
Indices: 26723363--26723422 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
26723353 CCTCGACCAC
* *
26723363 ATCTTCTTCCTCATGTAT
1 ATCTTCTTCCTCATCTGT
* *
26723381 ATCTTCTTCCTCGGTC-GC
1 ATCTTCTTCCTC-ATCTGT
26723399 ATCTTCTTCCTCATCTGT
1 ATCTTCTTCCTCATCTGT
*
26723417 ACCTTC
1 ATCTTC
26723423 ATTGTCCCCT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
17 2 0.06
18 30 0.91
19 1 0.03
ACGTcount: A:0.12, C:0.35, G:0.08, T:0.45
Consensus pattern (18 bp):
ATCTTCTTCCTCATCTGT
Found at i:26725640 original size:57 final size:58
Alignment explanation
Indices: 26725561--26725679 Score: 170
Period size: 57 Copynumber: 2.1 Consensus size: 58
26725551 AGATATGGTG
* *
26725561 AAATGGAGAAGTAGGAAACATTTGGAAATGATTATGGTTTTCTCCAAAATG-AAAATGA
1 AAATGGAGAAATA-GAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAATGA
* *
26725619 AAATGGAGAAATA-AAACCATTTGGAAATGAATGTGGTTTTCTCCAAAGTGAAAAATGA
1 AAATGGAGAAATAGAAA-CATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAATGA
26725677 AAA
1 AAA
26725680 AGACTCAAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
56 3 0.05
57 30 0.55
58 22 0.40
ACGTcount: A:0.45, C:0.08, G:0.21, T:0.26
Consensus pattern (58 bp):
AAATGGAGAAATAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAATGA
Found at i:26725787 original size:45 final size:45
Alignment explanation
Indices: 26725738--26725828 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
26725728 AAATAAATCA
26725738 TTTGATCATAATGAACCGTTGAATGCAAAAATATTAAATATATTT
1 TTTGATCATAATGAACCGTTGAATGCAAAAATATTAAATATATTT
*
26725783 TTTGATCATAATGAACCGTTGAATGCAGAAATATTAAATATATTT
1 TTTGATCATAATGAACCGTTGAATGCAAAAATATTAAATATATTT
26725828 T
1 T
26725829 CTCATAGATT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (45 bp):
TTTGATCATAATGAACCGTTGAATGCAAAAATATTAAATATATTT
Found at i:26728487 original size:33 final size:33
Alignment explanation
Indices: 26728450--26728517 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
26728440 GTGTAACTAA
26728450 ATTGTGTATATTTATATGTTTGAATTATATTTT
1 ATTGTGTATATTTATATGTTTGAATTATATTTT
26728483 ATTGTGTATATTTATATGTTTGAATTATATTTT
1 ATTGTGTATATTTATATGTTTGAATTATATTTT
26728516 AT
1 AT
26728518 GTATATGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (33 bp):
ATTGTGTATATTTATATGTTTGAATTATATTTT
Found at i:26728528 original size:20 final size:19
Alignment explanation
Indices: 26728456--26728519 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 19
26728446 CTAAATTGTG
26728456 TATATTTATATGTTTGAAT
1 TATATTTATATGTTTGAAT
*
26728475 TATATTT-TAT-TGTG---
1 TATATTTATATGTTTGAAT
26728489 TATATTTATATGTTTGAAT
1 TATATTTATATGTTTGAAT
26728508 TATATTT-TATGT
1 TATATTTATATGT
26728520 ATATGAATTG
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
14 7 0.18
15 3 0.08
16 3 0.08
17 3 0.08
18 8 0.21
19 14 0.37
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (19 bp):
TATATTTATATGTTTGAAT
Found at i:26739875 original size:21 final size:20
Alignment explanation
Indices: 26739841--26739879 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
26739831 AAACTTGTAT
26739841 ATATATCAACAAACATTCATA
1 ATATATCAACAAAC-TTCATA
26739862 ATATATCCAA-AAACTTCA
1 ATATAT-CAACAAACTTCA
26739880 AAAATCATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 10 0.59
22 3 0.18
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (20 bp):
ATATATCAACAAACTTCATA
Found at i:26744007 original size:17 final size:17
Alignment explanation
Indices: 26743974--26744016 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
26743964 TCGAAATTTC
* *
26743974 ATAA-GTTTGGTAGCCG
1 ATAATGTTTTGTAACCG
26743990 ATAATGTTTTGTAACCG
1 ATAATGTTTTGTAACCG
26744007 ATAATGTTTT
1 ATAATGTTTT
26744017 CAACAATGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 4 0.17
17 20 0.83
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (17 bp):
ATAATGTTTTGTAACCG
Found at i:26746420 original size:28 final size:28
Alignment explanation
Indices: 26746380--26746435 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
26746370 TTTCTAAATA
26746380 TTGTTCATGTTGAATAAAAAGATGAATT
1 TTGTTCATGTTGAATAAAAAGATGAATT
26746408 TTGTTCATGTTGAATAAAAAGATGAATT
1 TTGTTCATGTTGAATAAAAAGATGAATT
26746436 AGGGGTTAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.04, G:0.18, T:0.39
Consensus pattern (28 bp):
TTGTTCATGTTGAATAAAAAGATGAATT
Found at i:26747433 original size:47 final size:46
Alignment explanation
Indices: 26747343--26747505 Score: 202
Period size: 47 Copynumber: 3.5 Consensus size: 46
26747333 GATATTGTTA
*
26747343 CTGT-TACCGTTACTGTTACTGTTTCGGATTTGTTCGATGAGGTACT
1 CTGTGTACCG-TACTGTTACTGTTTCGGATTTGTCCGATGAGGTACT
* * * *
26747389 CTGTGTACCGTACTGTTCCTGTTCCGGTTTTGTCCTGGTGAGGTACT
1 CTGTGTACCGTACTGTTACTGTTTCGGATTTGTCC-GATGAGGTACT
* *
26747436 CTGTTTACCGTACTGTTACTGTTTTGGATTTGTTCCGATGAGGTACT
1 CTGTGTACCGTACTGTTACTGTTTCGGATTTG-TCCGATGAGGTACT
* * *
26747483 CTATGTATCGTACTGTTGCTGTT
1 CTGTGTACCGTACTGTTACTGTT
26747506 ACTTTACTGT
Statistics
Matches: 99, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
46 25 0.25
47 71 0.72
48 3 0.03
ACGTcount: A:0.13, C:0.19, G:0.25, T:0.44
Consensus pattern (46 bp):
CTGTGTACCGTACTGTTACTGTTTCGGATTTGTCCGATGAGGTACT
Found at i:26747680 original size:18 final size:19
Alignment explanation
Indices: 26747635--26747689 Score: 76
Period size: 18 Copynumber: 2.9 Consensus size: 19
26747625 TGGAAAGATC
26747635 GATTGTTACTGAATAATTT
1 GATTGTTACTGAATAATTT
* *
26747654 AATTGTTACTGTAT-ATTT
1 GATTGTTACTGAATAATTT
*
26747672 GATTTTTACTGAATAATT
1 GATTGTTACTGAATAATT
26747690 GACTGATACT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 15 0.50
19 15 0.50
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (19 bp):
GATTGTTACTGAATAATTT
Found at i:26747691 original size:18 final size:18
Alignment explanation
Indices: 26747635--26747705 Score: 70
Period size: 18 Copynumber: 3.9 Consensus size: 18
26747625 TGGAAAGATC
26747635 GATTGTTACTGAATAATTT
1 GATTGTTACTGAATAA-TT
* * *
26747654 AATTGTTACTGTATATTT
1 GATTGTTACTGAATAATT
*
26747672 GATTTTTACTGAATAATT
1 GATTGTTACTGAATAATT
* * *
26747690 GACTGATACTGGATAA
1 GATTGTTACTGAATAA
26747706 CCGATCAATT
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
18 28 0.68
19 13 0.32
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.45
Consensus pattern (18 bp):
GATTGTTACTGAATAATT
Found at i:26750675 original size:27 final size:28
Alignment explanation
Indices: 26750619--26750688 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
26750609 AAATTTGTAC
26750619 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
26750647 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
26750674 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
26750689 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:26753315 original size:19 final size:19
Alignment explanation
Indices: 26753291--26753330 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
26753281 CTTCAATTAC
26753291 ATATTTTATTCATCATCTA
1 ATATTTTATTCATCATCTA
26753310 ATATTTTATTCATCATCTA
1 ATATTTTATTCATCATCTA
26753329 AT
1 AT
26753331 TCTATCTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.53
Consensus pattern (19 bp):
ATATTTTATTCATCATCTA
Found at i:26754156 original size:93 final size:93
Alignment explanation
Indices: 26754047--26754219 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
26754037 CACCCATAAG
* * * *
26754047 CGAACTCGGACTCAACTCAATAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCGACTCA
1 CGAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCGACTCA
*
26754112 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
* * *
26754140 CGAACTCGAACTCAACTCAACGAGCTTGGACATTCTCATCCATAAGTGAACTCGGACTCGACTCA
1 CGAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCGACTCA
*
26754205 ATGAGCTCAGATGCC
66 ACGAGCTCAGATGCC
26754220 CAAATATCGT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCGACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:26754204 original size:46 final size:46
Alignment explanation
Indices: 26754040--26754211 Score: 120
Period size: 46 Copynumber: 3.7 Consensus size: 46
26754030 TGTAACCCAC
** * * * *
26754040 CCATAAGCGAACTCGGACTCAACTCAATAAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTTGGACATTCACAT
* * *
26754086 CCATAAGTGAACTCGGACTCGACTCAACGAG-TTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT--G--GAC-A-TTCACAT
* * *
26754136 -C-TCA-CGAACTCGAACTCAACTCAACGAGCTTGGACATTCTCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTTGGACATTCACAT
* * *
26754179 CCATAAGTGAACTCGGACTCGACTCAATGAGCT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCT
26754212 CAGATGCCCA
Statistics
Matches: 96, Mismatches: 19, Indels: 22
0.70 0.14 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 3 0.03
46 50 0.52
47 22 0.23
48 4 0.04
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTTGGACATTCACAT
Found at i:26760710 original size:29 final size:29
Alignment explanation
Indices: 26760678--26760780 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
26760668 GTGACGAGAT
* *
26760678 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
26760707 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
26760736 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
26760765 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26760781 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:26768700 original size:29 final size:29
Alignment explanation
Indices: 26768668--26768770 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
26768658 GTGACGAGAT
* *
26768668 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
26768697 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
26768726 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
26768755 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26768771 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:26775609 original size:41 final size:40
Alignment explanation
Indices: 26775455--26775620 Score: 206
Period size: 40 Copynumber: 4.1 Consensus size: 40
26775445 TCGGACATTG
* * * * * *
26775455 CCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAG
1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
* *
26775495 CCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAA
1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
*
26775535 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAA
1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
* * * *
26775575 CCCGGTTTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAG
1 CCCGGTTTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAA
26775616 CCCGG
1 CCCGG
26775621 ATACCATTCG
Statistics
Matches: 109, Mismatches: 16, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
40 82 0.75
41 27 0.25
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
Found at i:26778530 original size:40 final size:40
Alignment explanation
Indices: 26778403--26778624 Score: 290
Period size: 40 Copynumber: 5.7 Consensus size: 40
26778393 CTAACGGGGT
* * * * *
26778403 TAAGTCCCGAAGGCATTTGCGCTAGTGATTA-ATTC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
*
26778441 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
26778480 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
* *
26778520 TAAGTCCCGAAGGCATTTGTGGGATTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
* * *
26778560 TAAGTCCCGAAGGCATTTGTGCTAGTGACCATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
* * *
26778600 TAAGACCCGACGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
26778625 GGTTATATCG
Statistics
Matches: 166, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
38 31 0.19
39 43 0.26
40 92 0.55
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
Found at i:26786633 original size:40 final size:41
Alignment explanation
Indices: 26786576--26786785 Score: 236
Period size: 40 Copynumber: 5.3 Consensus size: 41
26786566 CTAACGGGGT
* * *
26786576 TAAGTCCCGAAGACATTTGTGCAAGTGATTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* *
26786616 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGG
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
26786656 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* *
26786696 TAAGTCCCGAAGGCATTTGTGCTAGTGA-TCATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* * * * * *
26786736 TAAGACCCGACGGC-CTTGTGTGAGTG-GTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
26786774 TAAATCCCGAAG
1 TAAGTCCCGAAG
26786786 ATACTTGGGT
Statistics
Matches: 150, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
38 12 0.08
39 19 0.13
40 119 0.79
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
Found at i:26791116 original size:65 final size:65
Alignment explanation
Indices: 26791041--26791171 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
26791031 AGTCCCATGC
26791041 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
**
26791106 ATCAGATAATAATAACATGTTATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
26791171 A
1 A
26791172 ACCCTAGGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.26
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:26791230 original size:27 final size:26
Alignment explanation
Indices: 26791174--26791230 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
26791164 CAACCTTAAC
* * * *
26791174 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGAGTAAATCAGTAATTTTCCA
*
26791200 CCTAGGAGTAAATCTGTAAATTTTCCA
1 CCTAGGAGTAAATCAGT-AATTTTCCA
26791227 CCTA
1 CCTA
26791231 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGAGTAAATCAGTAATTTTCCA
Found at i:26791716 original size:49 final size:49
Alignment explanation
Indices: 26791644--26791741 Score: 142
Period size: 49 Copynumber: 2.0 Consensus size: 49
26791634 TGATTTCTAA
* * *
26791644 ACGTCTTGTGAGCACTCGCACACTCACGAGCCCATGAAATGCCAGAATT
1 ACGTCTTCTGAGCACTCGCACACTCACAAGCCCATGAAATGCCAAAATT
* * *
26791693 ACGTCTTCTGGGCACTCTCACACTCACAAGCCCGTGAAATGCCAAAATT
1 ACGTCTTCTGAGCACTCGCACACTCACAAGCCCATGAAATGCCAAAATT
26791742 TTGGCATTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (49 bp):
ACGTCTTCTGAGCACTCGCACACTCACAAGCCCATGAAATGCCAAAATT
Found at i:26793689 original size:16 final size:16
Alignment explanation
Indices: 26793639--26793689 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
26793629 TCTTTCGGCT
*
26793639 TTTCAGCATTTTGACA
1 TTTCAGCATTTTGGCA
*
26793655 TTTCAGCATTTCGGCA
1 TTTCAGCATTTTGGCA
* *
26793671 TTTCGGCATTTTGGGA
1 TTTCAGCATTTTGGCA
26793687 TTT
1 TTT
26793690 GCTGATCTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.45
Consensus pattern (16 bp):
TTTCAGCATTTTGGCA
Found at i:26800502 original size:21 final size:21
Alignment explanation
Indices: 26800478--26800517 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26800468 ATACAAATTT
*
26800478 AACCTTTAGAATAAAATATAA
1 AACCATTAGAATAAAATATAA
* *
26800499 AACCATTATAATATAATAT
1 AACCATTAGAATAAAATAT
26800518 CACAACCGTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.10, G:0.03, T:0.33
Consensus pattern (21 bp):
AACCATTAGAATAAAATATAA
Found at i:26801596 original size:259 final size:259
Alignment explanation
Indices: 26801137--26801655 Score: 1011
Period size: 259 Copynumber: 2.0 Consensus size: 259
26801127 TTTTGAGATC
26801137 GTTGCAACTAGGTCTAGCTAGCCCGTACCTTCAATTTTGAAAGTTTTAAAGATTTTTAATGATTC
1 GTTGCAACTAGGTCTAGCTAGCCCGTACCTTCAATTTTGAAAGTTTTAAAGATTTTTAATGATTC
26801202 CATTAATGAATCTAATGATTTTTTTATGTTAAATGATGAATTTGTAATATTATTTGTTATTTAAA
66 CATTAATGAATCTAATGATTTTTTTATGTTAAATGATGAATTTGTAATATTATTTGTTATTTAAA
*
26801267 TGTATTTTGTTAAGTAATTTTTGATAAATTTATCGATTAGGGACTAAATTGTTAAAGTAGTAAAA
131 TGTATTTTGTTAAGTAATTTTTGATAAATTTATCGATTAGGGACTAAATTGTTAAAGTACTAAAA
26801332 ATACAAGGATTGGATATGAAATTATTACAAATGTGGGTTGTTTTGTCTGCCATGAATACTCACT
196 ATACAAGGATTGGATATGAAATTATTACAAATGTGGGTTGTTTTGTCTGCCATGAATACTCACT
* *
26801396 GTTGCAACTAGGTTTAGCTAGCCCGTACCTTCGATTTTGAAAGTTTTAAAGATTTTTAATGATTC
1 GTTGCAACTAGGTCTAGCTAGCCCGTACCTTCAATTTTGAAAGTTTTAAAGATTTTTAATGATTC
26801461 CATTAATGAATCTAATGATTTTTTTATGTTAAATGATGAATTTGTAATATTATTTGTTATTTAAA
66 CATTAATGAATCTAATGATTTTTTTATGTTAAATGATGAATTTGTAATATTATTTGTTATTTAAA
26801526 TGTATTTTGTTAAGTAATTTTTGATAAATTTATCGATTAGGGACTAAATTGTTAAAGTACTAAAA
131 TGTATTTTGTTAAGTAATTTTTGATAAATTTATCGATTAGGGACTAAATTGTTAAAGTACTAAAA
26801591 ATACAAGGATTGGATATGAAATTATTACAAATGTGGGTTGTTTTGTCTGCCATGAATACTCACT
196 ATACAAGGATTGGATATGAAATTATTACAAATGTGGGTTGTTTTGTCTGCCATGAATACTCACT
26801655 G
1 G
26801656 ATGTGATTTG
Statistics
Matches: 257, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
259 257 1.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (259 bp):
GTTGCAACTAGGTCTAGCTAGCCCGTACCTTCAATTTTGAAAGTTTTAAAGATTTTTAATGATTC
CATTAATGAATCTAATGATTTTTTTATGTTAAATGATGAATTTGTAATATTATTTGTTATTTAAA
TGTATTTTGTTAAGTAATTTTTGATAAATTTATCGATTAGGGACTAAATTGTTAAAGTACTAAAA
ATACAAGGATTGGATATGAAATTATTACAAATGTGGGTTGTTTTGTCTGCCATGAATACTCACT
Found at i:26803019 original size:12 final size:12
Alignment explanation
Indices: 26803002--26803031 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26802992 AACCACACAC
26803002 CCGTGTGCTAGG
1 CCGTGTGCTAGG
26803014 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
26803026 TCGTGT
1 CCGTGT
26803032 AAAACTTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:26805334 original size:13 final size:13
Alignment explanation
Indices: 26805316--26805340 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26805306 TAATGGTATA
26805316 TTGAATCCATGAT
1 TTGAATCCATGAT
26805329 TTGAATCCATGA
1 TTGAATCCATGA
26805341 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:26806868 original size:48 final size:48
Alignment explanation
Indices: 26806799--26807214 Score: 751
Period size: 48 Copynumber: 8.7 Consensus size: 48
26806789 TCGTAGTGTA
* * *
26806799 TATATGTGATAAGGCCTAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
26806847 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
26806895 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
26806943 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
26806991 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
26807039 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
26807087 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* *
26807135 TATATGTGGTAAAACCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* *
26807183 AATATGTGGTAAAGTCGAATGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
26807215 TGTTGTAACA
Statistics
Matches: 356, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 356 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
Found at i:26807309 original size:37 final size:37
Alignment explanation
Indices: 26807259--26807381 Score: 228
Period size: 37 Copynumber: 3.3 Consensus size: 37
26807249 GGAAATATAT
26807259 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
26807296 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
26807333 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
26807370 TCCGGGTAAGAC
1 TCCGGGTAAGAC
26807382 TTCGTAATAA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:26809565 original size:17 final size:18
Alignment explanation
Indices: 26809525--26809566 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
26809515 GATCTAAATT
* *
26809525 AATAATTTCATTCAATAT
1 AATAATTTCATACAATAA
*
26809543 ATTAATTT-ATACAATAA
1 AATAATTTCATACAATAA
26809560 AATAATT
1 AATAATT
26809567 CATTCCGTAC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (18 bp):
AATAATTTCATACAATAA
Found at i:26813919 original size:29 final size:28
Alignment explanation
Indices: 26813856--26813970 Score: 97
Period size: 29 Copynumber: 4.0 Consensus size: 28
26813846 TTCACATACC
* * * *
26813856 TGTATCTGGCCCATTAAGCCCAATCATA
1 TGTATATGGCCCATTAGGCCAAATCACA
*
26813884 T-TCATATGGCCCATTAGGTCCAAATCACC
1 TGT-ATATGGCCCATTAGG-CCAAATCACA
*
26813913 TGTATATGGCCCATTAGCCCCAAATCACA
1 TGTATATGGCCCATTAG-GCCAAATCACA
* * * * *
26813942 TTTATATAGCCCGTTAGGCCCAGTCACA
1 TGTATATGGCCCATTAGGCCAAATCACA
26813970 T
1 T
26813971 TCATATTCAT
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
27 1 0.01
28 23 0.33
29 45 0.64
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
TGTATATGGCCCATTAGGCCAAATCACA
Found at i:26816105 original size:31 final size:31
Alignment explanation
Indices: 26816067--26816202 Score: 149
Period size: 28 Copynumber: 4.6 Consensus size: 31
26816057 CATGAGATTG
*
26816067 GCACTAAGTGTGCGGGTTTAAAATTTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTTGTACA
* * **
26816098 GCACTAAGTGTGCGAGTTT--GA-TTATATG
1 GCACTAAGTGTGCGAGTTTAAAATTTGTACA
*
26816126 GCACTAAGTGTGCGGGTTTAAAATTTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTTGTACA
* * *
26816157 GCACTAAGTGTGCGAGTTT--GA-TTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTTGTACA
26816185 GCACTAAGTGTGCGAGTT
1 GCACTAAGTGTGCGAGTT
26816203 GATTATATAG
Statistics
Matches: 88, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
28 45 0.51
29 2 0.02
30 1 0.01
31 40 0.45
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (31 bp):
GCACTAAGTGTGCGAGTTTAAAATTTGTACA
Found at i:26816157 original size:59 final size:59
Alignment explanation
Indices: 26816065--26816198 Score: 259
Period size: 59 Copynumber: 2.3 Consensus size: 59
26816055 ATCATGAGAT
26816065 TGGCACTAAGTGTGCGGGTTTAAAATTTGTACAGCACTAAGTGTGCGAGTTTGATTATA
1 TGGCACTAAGTGTGCGGGTTTAAAATTTGTACAGCACTAAGTGTGCGAGTTTGATTATA
26816124 TGGCACTAAGTGTGCGGGTTTAAAATTTGTACAGCACTAAGTGTGCGAGTTTGATTATA
1 TGGCACTAAGTGTGCGGGTTTAAAATTTGTACAGCACTAAGTGTGCGAGTTTGATTATA
*
26816183 TAGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26816199 AGTTGATTAT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
59 74 1.00
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (59 bp):
TGGCACTAAGTGTGCGGGTTTAAAATTTGTACAGCACTAAGTGTGCGAGTTTGATTATA
Found at i:26816212 original size:27 final size:28
Alignment explanation
Indices: 26816097--26816225 Score: 179
Period size: 28 Copynumber: 4.5 Consensus size: 28
26816087 AAATTTGTAC
26816097 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* * * * *
26816125 GGCACTAAGTGTGCGGGTTTAAAATTTGTAC
1 AGCACTAAGTGTGCGAGTTT--GA-TTATAT
26816156 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
26816184 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
26816211 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
26816226 GACTCACTAT
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
27 25 0.28
28 39 0.44
29 1 0.01
30 1 0.01
31 22 0.25
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:26818214 original size:16 final size:16
Alignment explanation
Indices: 26818193--26818224 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
26818183 AAGTTCGGGA
26818193 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
26818209 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
26818225 GCATTACAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.31, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:26820407 original size:180 final size:180
Alignment explanation
Indices: 26820104--26820460 Score: 642
Period size: 180 Copynumber: 2.0 Consensus size: 180
26820094 CAAGTTTAAT
* *
26820104 CAATGTTTATAATATAATCACAAATTCACTACAAGTTGTCTTCCTGAGCAACAGTCACTAAATTG
1 CAATGTTTATAACATAATCACAAATTAACTACAAGTTGTCTTCCTGAGCAACAGTCACTAAATTG
* *
26820169 TTTATAATTGGAGCTACTAAACTCCAAATAAATTTCAGTTAATTTTATCTGAAAATAGACTCAAA
66 TTTATAACTGGAGATACTAAACTCCAAATAAATTTCAGTTAATTTTATCTGAAAATAGACTCAAA
*
26820234 TATCTTATATCCATAAAATTTTCAGAATTTTTGGTTTGGCCAATCAAGAC
131 TATATTATATCCATAAAATTTTCAGAATTTTTGGTTTGGCCAATCAAGAC
26820284 CAATGTTTATAACATAATCACAAATTAACTACAAGTTGTCTTCCTGAGCAACAGTCACTAAATTG
1 CAATGTTTATAACATAATCACAAATTAACTACAAGTTGTCTTCCTGAGCAACAGTCACTAAATTG
* *
26820349 TTTATAACTGGAGATACTAAACTCCAAATAAATTTCCGTTAATTTTATCTGGAAATAGACTCAAA
66 TTTATAACTGGAGATACTAAACTCCAAATAAATTTCAGTTAATTTTATCTGAAAATAGACTCAAA
*
26820414 TATATTCTATCCATAAAATTTTCAGAATTTTTGGTTTGGCCAATCAA
131 TATATTATATCCATAAAATTTTCAGAATTTTTGGTTTGGCCAATCAA
26820461 TAGCAGATTT
Statistics
Matches: 169, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
180 169 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (180 bp):
CAATGTTTATAACATAATCACAAATTAACTACAAGTTGTCTTCCTGAGCAACAGTCACTAAATTG
TTTATAACTGGAGATACTAAACTCCAAATAAATTTCAGTTAATTTTATCTGAAAATAGACTCAAA
TATATTATATCCATAAAATTTTCAGAATTTTTGGTTTGGCCAATCAAGAC
Found at i:26821607 original size:44 final size:44
Alignment explanation
Indices: 26821510--26821623 Score: 119
Period size: 43 Copynumber: 2.6 Consensus size: 44
26821500 CTGGCATTTC
* * *
26821510 GCCTGCTAGGCTTGAAGCCC-GATATCATTTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGCCCGGATATCATTTCACCAGCATTAAA
*
26821553 GCCTGCTAGGCTCGAAGCCCGGTAATATTA-TTCACCAGC-TTAAA
1 GCCTGCTAGGCTCGAAGCCCGG--ATATCATTTCACCAGCATTAAA
* * *
26821597 GCTTGCTAGGC-CGAGGCCCGAATATCA
1 GCCTGCTAGGCTCGAAGCCCGGATATCA
26821624 CATTTCGATA
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
41 5 0.08
43 27 0.45
44 15 0.25
45 8 0.13
46 5 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (44 bp):
GCCTGCTAGGCTCGAAGCCCGGATATCATTTCACCAGCATTAAA
Found at i:26823530 original size:14 final size:15
Alignment explanation
Indices: 26823501--26823530 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26823491 CAAAATTTAG
26823501 ACATGATACTTTCAC
1 ACATGATACTTTCAC
26823516 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
26823530 A
1 A
26823531 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:26823917 original size:30 final size:29
Alignment explanation
Indices: 26823876--26823933 Score: 107
Period size: 30 Copynumber: 2.0 Consensus size: 29
26823866 AGTAGCCGGA
26823876 GCTAGTTAAATCGCACACTTAGTGCCAAG
1 GCTAGTTAAATCGCACACTTAGTGCCAAG
26823905 GCTAGTTTAAATCGCACACTTAGTGCCAA
1 GCTAG-TTAAATCGCACACTTAGTGCCAA
26823934 AACTTCCGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (29 bp):
GCTAGTTAAATCGCACACTTAGTGCCAAG
Found at i:26835320 original size:42 final size:42
Alignment explanation
Indices: 26835229--26835323 Score: 129
Period size: 42 Copynumber: 2.3 Consensus size: 42
26835219 CAGAAAAATC
** * *
26835229 GAAGC-AATCATACTGACATGTAAGTGCATTATCGGATGTACT
1 GAAGCAAAT-ATACTGACACATAAGTGCATCATCGGATATACT
*
26835271 GAAGCAAATATACTGACACATAAGTGCATCATTGGATATACT
1 GAAGCAAATATACTGACACATAAGTGCATCATCGGATATACT
26835313 GAAGCAAATAT
1 GAAGCAAATAT
26835324 GCATCTCACA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 44 0.94
43 3 0.06
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (42 bp):
GAAGCAAATATACTGACACATAAGTGCATCATCGGATATACT
Found at i:26835750 original size:29 final size:29
Alignment explanation
Indices: 26835718--26835794 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 29
26835708 AATCATATTC
*
26835718 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* * *
26835747 ATATGGCCTATTAGCCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* *
26835776 ATATAGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
26835795 GTAACATTCA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:26838897 original size:124 final size:124
Alignment explanation
Indices: 26838675--26838899 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
26838665 GAATTATGTG
* * * ** * * *
26838675 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
26838740 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
26838799 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
26838864 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
26838900 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:26839021 original size:40 final size:40
Alignment explanation
Indices: 26838894--26839023 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
26838884 ATGCTGGAAA
* *
26838894 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
26838934 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
26838974 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
26839014 TTATATCCGG
1 TTATATCCGG
26839024 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:26839022 original size:80 final size:80
Alignment explanation
Indices: 26838856--26839023 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
26838846 CAATTGAATG
* * *
26838856 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
26838921 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
26838936 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
26839000 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
26839016 ATATCCGG
1 ATATCCGG
26839024 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:26846940 original size:124 final size:124
Alignment explanation
Indices: 26846718--26846942 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
26846708 GAATTATGTG
* * * ** * * *
26846718 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
26846783 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
26846842 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
26846907 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
26846943 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:26847064 original size:40 final size:40
Alignment explanation
Indices: 26846937--26847066 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
26846927 ATGCTGGAAA
* *
26846937 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
26846977 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
26847017 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
26847057 TTATATCCGG
1 TTATATCCGG
26847067 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:26847065 original size:80 final size:80
Alignment explanation
Indices: 26846899--26847066 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
26846889 CAATTGAATG
* * *
26846899 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
26846964 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
26846979 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
26847043 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
26847059 ATATCCGG
1 ATATCCGG
26847067 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:26851320 original size:14 final size:14
Alignment explanation
Indices: 26851301--26851331 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
26851291 TAAAGGATGG
26851301 TAAACCACTTTTAC
1 TAAACCACTTTTAC
26851315 TAAACCACTTTTAC
1 TAAACCACTTTTAC
26851329 TAA
1 TAA
26851332 GTGATTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.26, G:0.00, T:0.35
Consensus pattern (14 bp):
TAAACCACTTTTAC
Found at i:26860392 original size:80 final size:80
Alignment explanation
Indices: 26860260--26860509 Score: 249
Period size: 80 Copynumber: 3.1 Consensus size: 80
26860250 ACCCAAGTAT
* * * * ** *
26860260 CTTCGGGAT-TTAG-CCGTATATAACCACTCGCAC-AAGGCCTTCGGCTCTTAGCCCGG-ATATG
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
* *
26860321 GTCACTAGCATAAATGC
64 GTAACTAGCACAAATGC
26860338 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
26860403 AACTCGCACCAATGC
66 AACTAGCACAAATGC
* * * * * *
26860418 CTTTGGGACTTAGCCCGGA-ATTTGTAACTCGCACAAATGCCTTCGGGATTTAGCCCGGAATTAA
1 CTTCGGGTCTTAGCCCGGATA-TAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
* * *
26860482 TCACTAGCACACATGT
65 TAACTAGCACAAATGC
*
26860498 CTTCGGGACTTA
1 CTTCGGGTCTTA
26860510 ACCCCGTTAG
Statistics
Matches: 144, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
77 1 0.01
78 11 0.08
79 18 0.12
80 112 0.78
81 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACTAGCACAAATGC
Found at i:26860477 original size:40 final size:40
Alignment explanation
Indices: 26860285--26860505 Score: 218
Period size: 40 Copynumber: 5.5 Consensus size: 40
26860275 GTATATAACC
* * * *
26860285 ACTCGCAC-AAGGCCTTC-GGCTCTTAGCCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGAT-TTAGCCCGGAAT-TAGTA
* * *
26860324 ACTAGCATAAATGCCTTCGGG-TCTTAGCCCGG-ATATAGCA
1 ACTCGCACAAATGCCTTCGGGAT-TTAGCCCGGAAT-TAGTA
*
26860364 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGATTTAGCCCGGAATTAGTA
* * * *
26860404 ACTCGCACCAATGCCTTTGGGACTTAGCCCGGAATTTGTA
1 ACTCGCACAAATGCCTTCGGGATTTAGCCCGGAATTAGTA
* *
26860444 ACTCGCACAAATGCCTTCGGGATTTAGCCCGGAATTAATC
1 ACTCGCACAAATGCCTTCGGGATTTAGCCCGGAATTAGTA
* * *
26860484 ACTAGCACACATGTCTTCGGGA
1 ACTCGCACAAATGCCTTCGGGA
26860506 CTTAACCCCG
Statistics
Matches: 156, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.04
40 146 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGATTTAGCCCGGAATTAGTA
Found at i:26868592 original size:40 final size:40
Alignment explanation
Indices: 26868518--26868728 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
26868508 TCTTTGGGAT
** * *
26868518 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
26868556 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
26868596 TTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
26868636 TTAGCCCGAATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
26868676 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
26868716 TGAGCCCGGATAT
1 TTAGCCCGGATAT
26868729 CATTCGAATA
Statistics
Matches: 143, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
38 4 0.03
39 16 0.11
40 122 0.85
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:26872404 original size:48 final size:47
Alignment explanation
Indices: 26872306--26872530 Score: 199
Period size: 48 Copynumber: 4.7 Consensus size: 47
26872296 TGTCGAGGCT
* * * * *
26872306 GATGCCGTGTCCCAGACATGGTCTTACGCTAGCTCTTGTC-TCAT-TACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC---TCATAATGTGCC
*
26872354 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-GCC
* *
26872402 GATGCCATGTCCCAAACATGGTCTTACACTAGTGCACAT-ATCAATGT--C
1 GATGCCATGTCCCAGACATGGTCTTACACT-G-GCTC-TCAT-AATGTGCC
* * * * *
26872450 GATGCCACGTCCCAGACATGGTCTTACATTGGCTCTCACAACGTCGCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-GCC
* *
26872498 GATGCCATGTCCTAGACTTGGTCTTACACTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC
26872531 ACACATATAA
Statistics
Matches: 147, Mismatches: 19, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
45 7 0.05
46 7 0.05
47 2 0.01
48 120 0.82
49 1 0.01
50 5 0.03
51 5 0.03
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGCC
Found at i:26872422 original size:96 final size:96
Alignment explanation
Indices: 26872258--26872527 Score: 283
Period size: 96 Copynumber: 2.8 Consensus size: 96
26872248 GTGAATTGCT
* * * * * * *
26872258 GATGCCATGTTCCAAACATGGTCTTATATTGGCTCACATG-TCGAGGCTGATGCCGTGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGAT-GTGGCAGATGCCATGTCCCAGA
* *** * *
26872322 CATGGTCTTACGCTAGCT-CTTGTCTCATTACC
65 CATGGTCTTACACTAG-TGCACATATCAATACC
* * *
26872354 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGATGTGGCAGATGCCATGTCCCAGAC
**
26872419 ATGGTCTTACACTAGTGCACATATCAATGTC
66 ATGGTCTTACACTAGTGCACATATCAATACC
* ** * * *
26872450 GATGCCACGTCCCAGACATGGTCTTACATTGGCTCTCACAACGTCGCAGATGCCATGTCCTAGAC
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGATGTGGCAGATGCCATGTCCCAGAC
*
26872515 TTGGTCTTACACT
66 ATGGTCTTACACT
26872528 GGCACACATA
Statistics
Matches: 145, Mismatches: 27, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
95 1 0.01
96 143 0.99
97 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGATGTGGCAGATGCCATGTCCCAGAC
ATGGTCTTACACTAGTGCACATATCAATACC
Found at i:26877641 original size:46 final size:46
Alignment explanation
Indices: 26877561--26877925 Score: 473
Period size: 46 Copynumber: 8.0 Consensus size: 46
26877551 TTTGACATGA
* * * * * *
26877561 TGCCATAGTGTCTTTCAACTATGGCCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * * *
26877607 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * * *** *
26877653 TACCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
26877699 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGG-
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * *
26877744 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
26877790 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
26877836 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
26877882 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
26877926 AGAGCACACT
Statistics
Matches: 291, Mismatches: 26, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
45 49 0.17
46 242 0.83
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:26877796 original size:137 final size:138
Alignment explanation
Indices: 26877561--26877925 Score: 518
Period size: 137 Copynumber: 2.7 Consensus size: 138
26877551 TTTGACATGA
* * * * * *
26877561 TGCCATAGTGTCTTTCAACTATGGCCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATAGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAA
** * * ***
26877625 CCATGGTCTTATTCATTTCATGTCACGCTACCATGGTATCTTTCAACCATGGTCTTATTTATTTC
65 CCATGGTCTTACACATTTCATATCAGGCTACCATGGTATCTTTCAACCATGGTCTTACACATTTC
* * *
26877690 CCGTCATGT
130 ACATCAGGT
* *
26877699 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGG-TGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
* *
26877763 CATGGTCTTACACGTTTCATATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTACACATTTCATATCAGGCTACCATGGTATCTTTCAACCATGGTCTTACACATTTCA
*
26877828 TATCAGGT
131 CATCAGGT
26877836 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
26877901 CATGGTCTTACACATTTCATATCAG
66 CATGGTCTTACACATTTCATATCAG
26877926 AGAGCACACT
Statistics
Matches: 201, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
137 126 0.63
138 75 0.37
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (138 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCAGGCTACCATGGTATCTTTCAACCATGGTCTTACACATTTCA
CATCAGGT
Found at i:26880094 original size:20 final size:19
Alignment explanation
Indices: 26880055--26880105 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
26880045 TTATACTAAA
26880055 TAATTAATAATAA-AATATC
1 TAATTAA-AATAATAATATC
*
26880074 TCATTAAAATAATATATATC
1 TAATTAAAATAATA-ATATC
26880094 TAATT-AAATAAT
1 TAATTAAAATAAT
26880106 CATAAAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 5 0.18
19 14 0.50
20 9 0.32
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (19 bp):
TAATTAAAATAATAATATC
Found at i:26883007 original size:46 final size:46
Alignment explanation
Indices: 26882927--26883290 Score: 482
Period size: 46 Copynumber: 8.0 Consensus size: 46
26882917 TTTGACATGA
* * * * * *
26882927 TGCCATAGTGTCTTTCAACTATGGCCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * * *
26882973 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
** *** *
26883019 TGCCATGGTATCTTTCAACCATGGTCTTA-TTTTTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
26883064 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGG-
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * *
26883109 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
26883155 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
26883201 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
26883247 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
26883291 AGAGCACACT
Statistics
Matches: 293, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
45 88 0.30
46 205 0.70
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:26885460 original size:20 final size:19
Alignment explanation
Indices: 26885421--26885471 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
26885411 TTATACTAAA
26885421 TAATTAATAATAA-AATATC
1 TAATTAA-AATAATAATATC
*
26885440 TCATTAAAATAATATATATC
1 TAATTAAAATAATA-ATATC
26885460 TAATT-AAATAAT
1 TAATTAAAATAAT
26885472 CATAAAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 5 0.18
19 14 0.50
20 9 0.32
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (19 bp):
TAATTAAAATAATAATATC
Found at i:26905219 original size:40 final size:40
Alignment explanation
Indices: 26905160--26905367 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 40
26905150 CAATTGAATG
* * * *
26905160 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * * *
26905200 ATATCCGGGTTAAGACCCGACGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
26905240 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
26905280 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * **
26905320 CTATCCGGGCTAAGACCCGAAAGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
26905360 ATATCCGG
1 ATATCCGG
26905368 TTGTTTTCCG
Statistics
Matches: 139, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 139 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:26905298 original size:80 final size:80
Alignment explanation
Indices: 26905161--26905367 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
26905151 AATTGAATGA
* * ** * * * *
26905161 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGACGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
26905226 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
26905239 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
26905304 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* * *
26905321 TATCCGGGCTAAGACCCGAAAGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
26905368 TTGTTTTCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
78 1 0.01
80 103 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:26912721 original size:25 final size:25
Alignment explanation
Indices: 26912693--26912740 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26912683 TTATACCATG
* * *
26912693 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
26912718 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26912741 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26912809 original size:20 final size:20
Alignment explanation
Indices: 26912784--26912842 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
26912774 TAAATATGGT
26912784 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
26912804 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
26912824 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
26912843 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:26912824 original size:11 final size:11
Alignment explanation
Indices: 26912788--26912842 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
26912778 TATGGTATGT
26912788 ATGATATGCAC
1 ATGATATGCAC
* *
26912799 ATGAAATG--T
1 ATGATATGCAC
26912808 ATGATATGCAC
1 ATGATATGCAC
*
26912819 ATGATATG--T
1 ATGATATGCAC
26912828 ATGATATGCAC
1 ATGATATGCAC
26912839 ATGA
1 ATGA
26912843 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:26912920 original size:24 final size:24
Alignment explanation
Indices: 26912893--26913035 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
26912883 GAGGAAGTGA
26912893 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
26912917 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
26912941 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
26912964 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
26912988 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
26913012 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26913036 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:26912986 original size:47 final size:47
Alignment explanation
Indices: 26912893--26913035 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
26912883 GAGGAAGTGA
26912893 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
26912941 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
26912988 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
26913036 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:26913009 original size:71 final size:72
Alignment explanation
Indices: 26912893--26913036 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
26912883 GAGGAAGTGA
*
26912893 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
26912956 CCAGTTAT
65 CCAGTTAT
** * *
26912964 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
26913029 CAGTTAT
66 CAGTTAT
26913036 A
1 A
26913037 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:26913287 original size:30 final size:31
Alignment explanation
Indices: 26913227--26913289 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
26913217 CGTTTACAGT
26913227 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
26913258 AAAGGCTTCGGCCCAGTGTTATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
26913288 AA
1 AA
26913290 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:26920853 original size:25 final size:25
Alignment explanation
Indices: 26920825--26920872 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26920815 TTATACCATG
* * *
26920825 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
26920850 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26920873 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26920941 original size:20 final size:20
Alignment explanation
Indices: 26920916--26920974 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
26920906 TAAATATGGT
26920916 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
26920936 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
26920956 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
26920975 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:26920956 original size:11 final size:11
Alignment explanation
Indices: 26920920--26920974 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
26920910 TATGGTATGT
26920920 ATGATATGCAC
1 ATGATATGCAC
* *
26920931 ATGAAATG--T
1 ATGATATGCAC
26920940 ATGATATGCAC
1 ATGATATGCAC
*
26920951 ATGATATG--T
1 ATGATATGCAC
26920960 ATGATATGCAC
1 ATGATATGCAC
26920971 ATGA
1 ATGA
26920975 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:26921052 original size:24 final size:24
Alignment explanation
Indices: 26921025--26921143 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
26921015 GAGGAAGTGA
*
26921025 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
26921049 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
26921072 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
26921096 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26921120 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26921144 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:26921094 original size:47 final size:48
Alignment explanation
Indices: 26921025--26921143 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
26921015 GAGGAAGTGA
26921025 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
26921072 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
26921120 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26921144 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:26921370 original size:31 final size:31
Alignment explanation
Indices: 26921335--26921428 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
26921325 CGTTTACAGT
26921335 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
26921366 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
26921397 AAAGGCTTCGGCCCAGTGTTATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
26921427 AA
1 AA
26921429 CATGAAAAGG
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
30 9 0.15
31 52 0.85
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:26924277 original size:40 final size:39
Alignment explanation
Indices: 26924204--26924411 Score: 157
Period size: 40 Copynumber: 5.2 Consensus size: 39
26924194 CAATTGAATG
* * * *
26924204 ATATCCGGGCTAAGTCCC-AAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGA-A-TTGTGCAAGTAATT
* * * *
26924244 ATATCCGGGTTAAGACCCGAAGGAAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGG-AATTGTGCAAGTAATT
* * **
26924284 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGAATT-GTGCAAGTAATT
* * * **
26924324 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGG-AATTGTGCAAGTAATT
* * * **
26924364 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGAATT-GTGCAAGTAATT
26924404 ATATCCGG
1 ATATCCGG
26924412 TTGTTTTCCG
Statistics
Matches: 137, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
39 5 0.04
40 125 0.91
41 6 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGAATTGTGCAAGTAATT
Found at i:26924354 original size:80 final size:80
Alignment explanation
Indices: 26924205--26924411 Score: 220
Period size: 80 Copynumber: 2.6 Consensus size: 80
26924195 AATTGAATGA
* * * ** * ** * *
26924205 TATCCGGGCTAAGTCCCAAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGAAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGAAA
*
26924270 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
26924283 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGA
* *
26924348 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
26924365 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
26924412 TTGTTTTCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
78 1 0.01
80 103 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGAAA
TTGTGCAAGTCGTAC
Found at i:26940163 original size:44 final size:43
Alignment explanation
Indices: 26940107--26940254 Score: 158
Period size: 42 Copynumber: 3.4 Consensus size: 43
26940097 AATTATCGTA
* *
26940107 TAAGACCGTGTCTGGGACACTGGCATCGATTTGAAATTTACGTG
1 TAAGACCATGTCTGGGACACTGGCATCGATCTG-AATTTACGTG
* * *
26940151 TAAGACCATGTCTGGGACATTGGCATCGTATCTG--TTTTCGTA
1 TAAGACCATGTCTGGGACACTGGCATCG-ATCTGAATTTACGTG
* ** *
26940193 TAAGACCTTGTCTGGGACAGAGGCATCGATACTGAA-TTACATG
1 TAAGACCATGTCTGGGACACTGGCATCGAT-CTGAATTTACGTG
*
26940236 TAAGACCACGTCTGGGACA
1 TAAGACCATGTCTGGGACA
26940255 TCGACATTGT
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
41 2 0.02
42 34 0.39
43 21 0.24
44 26 0.30
45 4 0.05
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACACTGGCATCGATCTGAATTTACGTG
Found at i:26942127 original size:20 final size:20
Alignment explanation
Indices: 26942102--26942140 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26942092 ACTTGTAACT
*
26942102 TACCATAATCTTTCACAACA
1 TACCATAATCCTTCACAACA
26942122 TACCATAATCCTTCACAAC
1 TACCATAATCCTTCACAAC
26942141 TTATACATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.33, G:0.00, T:0.28
Consensus pattern (20 bp):
TACCATAATCCTTCACAACA
Found at i:26943313 original size:27 final size:27
Alignment explanation
Indices: 26943283--26943486 Score: 268
Period size: 27 Copynumber: 7.6 Consensus size: 27
26943273 AGTACTCCCA
*
26943283 ATTTATAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
** *
26943310 ATTTTTAAAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
26943337 ATTTACAGAATTACCGTTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
*
26943363 AGTTTACAGAATTACCATTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
* *
26943391 ATTTATAGAATTACCATTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
** *
26943417 AGTTTACAGAATTACTATTTTACCCTCA
1 A-TTTACAGAATTACCGTTTTACCCTCG
*
26943445 ATTTATAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
26943472 ATTTACAAAATTACC
1 ATTTACAGAATTACC
26943487 AAAATACCCT
Statistics
Matches: 158, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
26 2 0.01
27 154 0.97
28 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
ATTTACAGAATTACCGTTTTACCCTCG
Found at i:26943319 original size:54 final size:53
Alignment explanation
Indices: 26943250--26943487 Score: 266
Period size: 54 Copynumber: 4.4 Consensus size: 53
26943240 TACTGAAATG
* ***
26943250 CCCTCGACTTGTAAAATTACCAAAGTACTCC-CAATTTATAGAATTACCGTTTTA
1 CCCTCGA-TTTTAAAATTACCATTTTAC-CCTCAATTTATAGAATTACCGTTTTA
* * *
26943304 CCCTCGATTTTTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGA-TTTTAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTA
* * *
26943358 CCCTC-AGTTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTTA-A-AATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTA
* *
26943412 CCCTC-AGTTTACAGAATTACTATTTTACCCTCAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTTA-A-AATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTA
*
26943466 CCCTCGATTTACAAAATTACCA
1 CCCTCGATTT-TAAAATTACCA
26943488 AAATACCCTG
Statistics
Matches: 161, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.02
53 4 0.02
54 148 0.92
55 4 0.02
56 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.37
Consensus pattern (53 bp):
CCCTCGATTTTAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTA
Found at i:26943496 original size:81 final size:81
Alignment explanation
Indices: 26943281--26943487 Score: 317
Period size: 81 Copynumber: 2.6 Consensus size: 81
26943271 AAAGTACTCC
* *
26943281 CAATTTATAGAATTACCGTTTTACCCTCGATTTTTAAAATTACCGTTTTACCCTCGATTTACAGA
1 CAATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGA
*
26943346 ATTACCGTTTTACCCT
66 ATTACCATTTTACCCT
* * * *
26943362 CAGTTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTC-AGTTTACAG
1 CAATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGA-TTTACAG
*
26943426 AATTACTATTTTACCCT
65 AATTACCATTTTACCCT
*
26943443 CAATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCA
1 CAATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCA
26943488 AAATACCCTG
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 111 0.99
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (81 bp):
CAATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGA
ATTACCATTTTACCCT
Found at i:26943531 original size:27 final size:27
Alignment explanation
Indices: 26943478--26943602 Score: 164
Period size: 27 Copynumber: 4.7 Consensus size: 27
26943468 CTCGATTTAC
*
26943478 AAAATTACCAAAATA-CCCTGGGTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
26943504 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
26943531 AAAATTACCAAAATACCCATGGTTTGC
1 AAAATTACCAAAATACCCCTGGTTTGT
* **
26943558 AAAATTACTAAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTGGT-TTGT
*
26943585 AAAATTACCGAAATACCC
1 AAAATTACCAAAATACCC
26943603 TGTAGGGTAG
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 17 0.20
27 70 0.80
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.26
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:26943610 original size:26 final size:25
Alignment explanation
Indices: 26943478--26943620 Score: 126
Period size: 27 Copynumber: 5.4 Consensus size: 25
26943468 CTCGATTTAC
26943478 AAAATTACCAAAATACCCTG-GGTTGT
1 AAAATTACCAAAATACCCTGTGG--GT
**
26943504 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATA-CCCT-GTGGGT
** *
26943531 AAAATTACCAAAATACCCATGGTTTGC
1 AAAATTACCAAAATACCC-T-GTGGGT
*
26943558 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACCAAAATA-CCCTGT-GGGT
*
26943585 AAAATTACCGAAATACCCTGTAGGGT
1 AAAATTACCAAAATACCCTGT-GGGT
*
26943611 AGAATTACCA
1 AAAATTACCA
26943621 TTTTGCCCCT
Statistics
Matches: 100, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
26 39 0.39
27 57 0.57
28 4 0.04
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (25 bp):
AAAATTACCAAAATACCCTGTGGGT
Found at i:26945980 original size:46 final size:46
Alignment explanation
Indices: 26945930--26946103 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
26945920 GTTGAGCATT
26945930 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * * *
26945976 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* * *
26946023 CGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACGAC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
26946069 CGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26946104 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:26946094 original size:93 final size:93
Alignment explanation
Indices: 26945925--26946096 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
26945915 GGATGGTTGA
* * *
26945925 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACCGAACTCGTTGAGT
26945990 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
26946018 GCATCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACGACCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACCGAACTCGTTGAGT
*
26946083 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
26946097 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:26950093 original size:27 final size:27
Alignment explanation
Indices: 26950063--26950294 Score: 286
Period size: 27 Copynumber: 8.6 Consensus size: 27
26950053 AGTACTCCCG
26950063 ATTTACAGAATTACCATTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCA
* *
26950090 ATTTACAGAATTATCGTTTTACCCTCGA
1 ATTTACAGAATTACCATTTTACCCTC-A
* ** * *
26950118 TTTTTTA-AATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCA
*
26950144 ATTTACAGAATTACCGTTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCA
* *
26950171 GTTTACAGAATTACCATTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCA
26950198 ATTTACAGAATTACCATTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCA
* * *
26950225 GTTTATAGAATTACTATTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCA
* ** *
26950252 ATTTATAGAATTACTGTTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCA
*
26950279 ATTTACAAAATTACCA
1 ATTTACAGAATTACCA
26950295 AAATACCCCT
Statistics
Matches: 177, Mismatches: 26, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
26 4 0.02
27 168 0.95
28 5 0.03
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
ATTTACAGAATTACCATTTTACCCTCA
Found at i:26950301 original size:27 final size:27
Alignment explanation
Indices: 26950271--26950437 Score: 182
Period size: 27 Copynumber: 6.2 Consensus size: 27
26950261 ATTACTGTTT
* *
26950271 TACCCTCGATTTACAAAATTACCAAAA
1 TACCCTCGGTTTGCAAAATTACCAAAA
* * *
26950298 TACCCCTAGG-TTGTAAAACTACCAAAA
1 TA-CCCTCGGTTTGCAAAATTACCAAAA
*
26950325 TACCC-CTAGTTTGCAAAATTACCAAAA
1 TACCCTC-GGTTTGCAAAATTACCAAAA
26950352 TATCCCT-GGTTTGCAAAATTACCAAAA
1 TA-CCCTCGGTTTGCAAAATTACCAAAA
*
26950379 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GGTTTGCAAAATTACCAAAA
*
26950406 TACCCAT-GGTTTGCAAAATTACTAAAA
1 TACCC-TCGGTTTGCAAAATTACCAAAA
26950433 TACCC
1 TACCC
26950438 CTGTAGGGTA
Statistics
Matches: 118, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
26 7 0.06
27 103 0.87
28 8 0.07
ACGTcount: A:0.40, C:0.25, G:0.09, T:0.27
Consensus pattern (27 bp):
TACCCTCGGTTTGCAAAATTACCAAAA
Found at i:26950302 original size:81 final size:81
Alignment explanation
Indices: 26950042--26950302 Score: 312
Period size: 81 Copynumber: 3.2 Consensus size: 81
26950032 CTCGACTTGT
*
26950042 AAAATTACCAAAGTACTCC-CGATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTA-TC
1 AAAATTACCAAATTAC-CCTCGATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACT-
**
26950105 GTTTTACCCTCGATTTTT
64 GTTTTACCCTCGATTTAC
* *** * * **
26950123 TAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCAT
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACTGT
26950188 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* ** * * *
26950204 AGAATTACCATTTTACCCTC-AGTTTATAGAATTACTATTTTACCCTCAATTTATAGAATTACTG
1 AAAATTACCAAATTACCCTCGA-TTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACTG
26950268 TTTTACCCTCGATTTAC
65 TTTTACCCTCGATTTAC
*
26950285 AAAATTACCAAAATACCC
1 AAAATTACCAAATTACCC
26950303 CTAGGTTGTA
Statistics
Matches: 152, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
80 3 0.02
81 149 0.98
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (81 bp):
AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACTGT
TTTACCCTCGATTTAC
Found at i:26950329 original size:81 final size:81
Alignment explanation
Indices: 26950163--26950410 Score: 225
Period size: 81 Copynumber: 3.1 Consensus size: 81
26950153 ATTACCGTTT
* *** *
26950163 TACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA-CCCTCAGT
1 TACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAATACCCCT-AGG
* * * ***
26950227 TTATAGAATTACTATTT
65 TTGTAAAATTACCAAAA
* * **
26950244 TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCAAAATACCCCTAGGT
1 TACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAATACCCCTAGGT
*
26950309 TGTAAAACTACCAAAA
66 TGTAAAATTACCAAAA
* * *** * *
26950325 TACCC-CTAGTTTGCAAAATTACCAAAATATCCCT-GGTTTGCAAAATTACCAAAATACCCCT-G
1 TACCCTC-AGTTTACAGAATTACCATTTTA-CCCTCGATTTACAAAATTACCAAAATACCCCTAG
26950387 GTTTGTAAAATTACCAAAA
64 G-TTGTAAAATTACCAAAA
26950406 TACCC
1 TACCC
26950411 ATGGTTTGCA
Statistics
Matches: 135, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
80 3 0.02
81 124 0.92
82 8 0.06
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (81 bp):
TACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAATACCCCTAGGT
TGTAAAATTACCAAAA
Found at i:26950418 original size:81 final size:81
Alignment explanation
Indices: 26950284--26950440 Score: 253
Period size: 81 Copynumber: 1.9 Consensus size: 81
26950274 CCTCGATTTA
*
26950284 CAAAATTACCAAAATACCCCTAGGTTGTAAAACTACCAAAATACCCCTAGTTTGCAAAATTACCA
1 CAAAATTACCAAAATACCCCTAGGTTGTAAAACTACCAAAATACCCATAGTTTGCAAAATTACCA
*
26950349 AAATATCCCTGGTTTG
66 AAATACCCCTGGTTTG
* * *
26950365 CAAAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCATGGTTTGCAAAATTACT
1 CAAAATTACCAAAATACCCCTAGG-TTGTAAAACTACCAAAATACCCATAGTTTGCAAAATTACC
26950429 AAAATACCCCTG
65 AAAATACCCCTG
26950441 TAGGGTAAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
80 2 0.03
81 68 0.97
ACGTcount: A:0.40, C:0.24, G:0.10, T:0.26
Consensus pattern (81 bp):
CAAAATTACCAAAATACCCCTAGGTTGTAAAACTACCAAAATACCCATAGTTTGCAAAATTACCA
AAATACCCCTGGTTTG
Done.