Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 93 of 425
Found at i:26950439 original size:54 final size:53
Alignment explanation
Indices: 26950284--26950440 Score: 226
Period size: 54 Copynumber: 2.9 Consensus size: 53
26950274 CCTCGATTTA
* * *
26950284 CAAAATTACCAAAATACCCCTAGG-TTGTAAAACTACCAAAATACCCCTAGTTTG
1 CAAAATTACCAAAATA-CCCT-GGTTTGCAAAATTACCAAAATACCCCTGGTTTG
26950338 CAAAATTACCAAAATATCCCTGGTTTGCAAAATTACCAAAATACCCCTGGTTTG
1 CAAAATTACCAAAATA-CCCTGGTTTGCAAAATTACCAAAATACCCCTGGTTTG
* *
26950392 TAAAATTACCAAAATACCCATGGTTTGCAAAATTACTAAAATACCCCTG
1 CAAAATTACCAAAATACCC-TGGTTTGCAAAATTACCAAAATACCCCTG
26950441 TAGGGTAAAA
Statistics
Matches: 95, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
53 5 0.05
54 90 0.95
ACGTcount: A:0.40, C:0.24, G:0.10, T:0.26
Consensus pattern (53 bp):
CAAAATTACCAAAATACCCTGGTTTGCAAAATTACCAAAATACCCCTGGTTTG
Found at i:26950450 original size:27 final size:27
Alignment explanation
Indices: 26950285--26950483 Score: 170
Period size: 27 Copynumber: 7.4 Consensus size: 27
26950275 CTCGATTTAC
*
26950285 AAAATTACCAAAATACCCCTAGGT-TGT
1 AAAATTACCAAAATACCCCT-GGTGGGT
* * ** *
26950312 AAAACTACCAAAATACCCCTAGTTTGC
1 AAAATTACCAAAATACCCCTGGTGGGT
* ** *
26950339 AAAATTACCAAAATATCCCTGGTTTGC
1 AAAATTACCAAAATACCCCTGGTGGGT
**
26950366 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTGGGT
* ** *
26950393 AAAATTACCAAAATACCCATGGTTTGC
1 AAAATTACCAAAATACCCCTGGTGGGT
*
26950420 AAAATTACTAAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTGGT-GGGT
* *
26950447 AAAATTATCGAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTGGT-GGGT
*
26950474 AGAATTACCA
1 AAAATTACCA
26950484 TTTTGCCCCT
Statistics
Matches: 149, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 4 0.03
27 145 0.97
ACGTcount: A:0.40, C:0.22, G:0.12, T:0.26
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTGGGT
Found at i:26950451 original size:81 final size:80
Alignment explanation
Indices: 26950284--26950467 Score: 244
Period size: 81 Copynumber: 2.3 Consensus size: 80
26950274 CCTCGATTTA
*
26950284 CAAAATTACCAAAATACCCCTAGGTTGTAAAACTACCAAAATACCCCTAGTTTGCAAAATTACCA
1 CAAAATTACCAAAATACCCCT-GGTTGTAAAACTACCAAAATACCCATAGTTTGCAAAATTACCA
* **
26950349 AAATATCCCTGGTTTG
65 AAATACCCCTGGTGGG
* * *
26950365 CAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCATGGTTTGCAAAATTACTA
1 CAAAATTACCAAAATACCCCTGG-TTGTAAAACTACCAAAATACCCATAGTTTGCAAAATTACCA
26950430 AAATACCCCT-GTAGGG
65 AAATACCCCTGGT-GGG
* * *
26950446 TAAAATTATCGAAATACCCCTG
1 CAAAATTACCAAAATACCCCTG
26950468 TAGGGTAGAA
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
80 4 0.04
81 87 0.96
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (80 bp):
CAAAATTACCAAAATACCCCTGGTTGTAAAACTACCAAAATACCCATAGTTTGCAAAATTACCAA
AATACCCCTGGTGGG
Found at i:26950461 original size:54 final size:53
Alignment explanation
Indices: 26950285--26950464 Score: 202
Period size: 54 Copynumber: 3.3 Consensus size: 53
26950275 CTCGATTTAC
* * * ** *
26950285 AAAATTACCAAAATACCCCTAGG-TTGTAAAACTACCAAAATACCCCTAGTTTGC
1 AAAATTACCAAAATA-CCCT-GGTTTGCAAAATTACCAAAATACCCCTGGTGGGT
**
26950339 AAAATTACCAAAATATCCCTGGTTTGCAAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGCAAAATTACCAAAATACCCCTGGTGGGT
*
26950393 AAAATTACCAAAATACCCATGGTTTGCAAAATTACTAAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCC-TGGTTTGCAAAATTACCAAAATACCCCTGGT-GGGT
* *
26950447 AAAATTATCGAAATACCC
1 AAAATTACCAAAATACCC
26950465 CTGTAGGGTA
Statistics
Matches: 113, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
53 7 0.06
54 106 0.94
ACGTcount: A:0.41, C:0.23, G:0.11, T:0.26
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTGGTTTGCAAAATTACCAAAATACCCCTGGTGGGT
Found at i:26952400 original size:41 final size:41
Alignment explanation
Indices: 26952282--26952402 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 41
26952272 TACCATACCA
* * **
26952282 ATGCCATATCCCAGATACGGTCTTACATGGGATCTCATATCG
1 ATGCCATAT-CCAGATATGGTCTTACACGAAATCTCATATCG
* *
26952324 ATGCCAATAGCCCA-ACTATGGTCTTACACGAAATCTCATATTG
1 ATGCC-ATA-TCCAGA-TATGGTCTTACACGAAATCTCATATCG
* *
26952367 ATGCCATATCTAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCAGATATGGTCTTACACGAAATCTCA
26952403 ACTAACCCTA
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
41 23 0.35
42 10 0.15
43 33 0.50
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (41 bp):
ATGCCATATCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:26953858 original size:64 final size:64
Alignment explanation
Indices: 26953780--26953921 Score: 275
Period size: 64 Copynumber: 2.2 Consensus size: 64
26953770 AACATTCTCA
26953780 AGGCCAACTTAGTTTTTTTTTTATGCAAGGTGGACCTTAGCTCATGCCAGGATGTCATCTCTAG
1 AGGCCAACTTAGTTTTTTTTTTATGCAAGGTGGACCTTAGCTCATGCCAGGATGTCATCTCTAG
*
26953844 AGGCCAACTTAGTTTTTTTTTTATGCAAGGTGGACTTTAGCTCATGCCAGGATGTCATCTCTAG
1 AGGCCAACTTAGTTTTTTTTTTATGCAAGGTGGACCTTAGCTCATGCCAGGATGTCATCTCTAG
26953908 AGGCCAACTTAGTT
1 AGGCCAACTTAGTT
26953922 AATTTGCTAC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 77 1.00
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.36
Consensus pattern (64 bp):
AGGCCAACTTAGTTTTTTTTTTATGCAAGGTGGACCTTAGCTCATGCCAGGATGTCATCTCTAG
Found at i:26953942 original size:64 final size:63
Alignment explanation
Indices: 26953780--26953948 Score: 205
Period size: 64 Copynumber: 2.6 Consensus size: 63
26953770 AACATTCTCA
** **
26953780 AGGCCAACTTAGTTTTTTTTTTATGCAAGGTGGACCTTAGCTCATGCCAGGATGTCATCTCTAG
1 AGGCCAACTTAGTTAATTTGCTA-GCAAGGTGGACCTTAGCTCATGCCAGGATGTCATCTCTAG
** ** *
26953844 AGGCCAACTTAGTTTTTTTTTTATGCAAGGTGGACTTTAGCTCATGCCAGGATGTCATCTCTAG
1 AGGCCAACTTAGTTAATTTGCTA-GCAAGGTGGACCTTAGCTCATGCCAGGATGTCATCTCTAG
*
26953908 AGGCCAACTTAGTTAATTTGCTA-CACTGGATGGACCTTAGC
1 AGGCCAACTTAGTTAATTTGCTAGCA-AGG-TGGACCTTAGC
26953949 ATGTGTAAAG
Statistics
Matches: 96, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
62 2 0.02
63 2 0.02
64 92 0.96
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (63 bp):
AGGCCAACTTAGTTAATTTGCTAGCAAGGTGGACCTTAGCTCATGCCAGGATGTCATCTCTAG
Found at i:26957083 original size:31 final size:31
Alignment explanation
Indices: 26957048--26957110 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
26957038 TTACATTACC
26957048 ATATGACATCTTAGGTACATGTTCATTTCAA
1 ATATGACATCTTAGGTACATGTTCATTTCAA
26957079 ATATGACATCTTAGGTACATGTTCATTTCAA
1 ATATGACATCTTAGGTACATGTTCATTTCAA
26957110 A
1 A
26957111 CTTATATACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (31 bp):
ATATGACATCTTAGGTACATGTTCATTTCAA
Found at i:26963243 original size:133 final size:133
Alignment explanation
Indices: 26963005--26963271 Score: 516
Period size: 133 Copynumber: 2.0 Consensus size: 133
26962995 CGCACAGCCC
26963005 ATAGGCATCATATAATCAGTATTAATATATGCCTCCACCACACTAGTATAACTCAGTAATCCGCA
1 ATAGGCATCATATAATCAGTATTAATATATGCCTCCACCACACTAGTATAACTCAGTAATCCGCA
* *
26963070 AAAAAATGTTGGATTCTGGTATAATTAGTAATATCTCCGTACCATCACATATATCTTGAATAGCG
66 AAAAAATGTTGGATTCTGGTATAATCAGTAATATCTCCGTACCATCACATATATCTTGAATAACG
26963135 CAT
131 CAT
26963138 ATAGGCATCATATAATCAGTATTAATATATGCCTCCACCACACTAGTATAACTCAGTAATCCGCA
1 ATAGGCATCATATAATCAGTATTAATATATGCCTCCACCACACTAGTATAACTCAGTAATCCGCA
26963203 AAAAAATGTTGGATTCTGGTATAATCAGTAATATCTCCGTACCATCACATATATCTTGAATAACG
66 AAAAAATGTTGGATTCTGGTATAATCAGTAATATCTCCGTACCATCACATATATCTTGAATAACG
26963268 CAT
131 CAT
26963271 A
1 A
26963272 AATAACCCTA
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 132 1.00
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (133 bp):
ATAGGCATCATATAATCAGTATTAATATATGCCTCCACCACACTAGTATAACTCAGTAATCCGCA
AAAAAATGTTGGATTCTGGTATAATCAGTAATATCTCCGTACCATCACATATATCTTGAATAACG
CAT
Found at i:26965543 original size:43 final size:43
Alignment explanation
Indices: 26965388--26965543 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 43
26965378 ATATCATACA
** *
26965388 ATGCCAACT-TCCCAGACGTGGTCTTACATATAATCACATATCA
1 ATGCCAA-TGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
26965431 ATGCCACTGTCCCAGACAG-GCTCTTACACG-AATCAAATAT-G
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* * * *
26965472 ATGTCGATATCCCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
26965515 ATGCCAATGTCCTAGACGTGGTCTTACAC
1 ATGCCAATGTCCCAGACGTGGTCTTACAC
26965544 AAGAACACAT
Statistics
Matches: 90, Mismatches: 18, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
41 23 0.26
42 19 0.21
43 47 0.52
44 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:26968616 original size:21 final size:21
Alignment explanation
Indices: 26968592--26968631 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26968582 ACCTTTTCTA
*
26968592 AAGTTAAAAGTAAAAACTATT
1 AAGTTAAAAGGAAAAACTATT
*
26968613 AAGTTAAAAGGCAAAACTA
1 AAGTTAAAAGGAAAAACTA
26968632 CGTCTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.07, G:0.12, T:0.23
Consensus pattern (21 bp):
AAGTTAAAAGGAAAAACTATT
Found at i:26970348 original size:16 final size:18
Alignment explanation
Indices: 26970329--26970361 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
26970319 CATACTAGAT
26970329 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
26970345 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
26970362 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:26970931 original size:45 final size:45
Alignment explanation
Indices: 26970875--26971055 Score: 326
Period size: 45 Copynumber: 4.0 Consensus size: 45
26970865 GCCCGATATC
* *
26970875 ATTTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT
1 ATTTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
* *
26970920 ATCTCACCGGCATCATAGCCTACTAGGCTCAAAGGCCCGAATAGT
1 ATTTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
26970965 ATTTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
1 ATTTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
26971010 ATTTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
1 ATTTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
26971055 A
1 A
26971056 CTGTACGATA
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 130 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (45 bp):
ATTTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
Found at i:26973164 original size:30 final size:30
Alignment explanation
Indices: 26973120--26973200 Score: 103
Period size: 30 Copynumber: 2.7 Consensus size: 30
26973110 TATCGATGAT
*
26973120 TATCGAAATATGAAAAGGGATAGCTTTCA-C
1 TATCGAATTATGAAAAGGGATAGC-TTCAGC
*
26973150 TGA-CGAATTATGAAAATGGATAGCTTCAGC
1 T-ATCGAATTATGAAAAGGGATAGCTTCAGC
*
26973180 TATCAAATTATGAAAAGGGAT
1 TATCGAATTATGAAAAGGGAT
26973201 GGTGACAACC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
29 5 0.11
30 38 0.86
31 1 0.02
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27
Consensus pattern (30 bp):
TATCGAATTATGAAAAGGGATAGCTTCAGC
Found at i:26973215 original size:30 final size:30
Alignment explanation
Indices: 26973181--26973390 Score: 167
Period size: 30 Copynumber: 7.1 Consensus size: 30
26973171 AGCTTCAGCT
* *
26973181 ATCAAATTATGAAAAGGGATGGTGACAACC
1 ATCAAACTATGAAAAGGGATGGTGACGACC
* * * *
26973211 ATC-AACAACGAAAAGGGATGGTAATGACC
1 ATCAAACTATGAAAAGGGATGGTGACGACC
* * * *
26973240 ATCAAACTATGAAAAGGGATAGCT-TCGGCT
1 ATCAAACTATGAAAAGGGAT-GGTGACGACC
* * **
26973270 ATCAAATTATGAAAATGGATGGTGACGTTC
1 ATCAAACTATGAAAAGGGATGGTGACGACC
**
26973300 ATC-AACTACAAAAAGGGATGGTGACGACC
1 ATCAAACTATGAAAAGGGATGGTGACGACC
* * * *
26973329 ATCAAAATATGAAAAGGGATAGCT-TCGACT
1 ATCAAACTATGAAAAGGGAT-GGTGACGACC
* * *
26973359 ATCAAACTATGGAAATGGATGGTGACAACC
1 ATCAAACTATGAAAAGGGATGGTGACGACC
26973389 AT
1 AT
26973391 TGTGATTCTA
Statistics
Matches: 135, Mismatches: 39, Indels: 12
0.73 0.21 0.06
Matches are distributed among these distances:
29 50 0.37
30 81 0.60
31 4 0.03
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (30 bp):
ATCAAACTATGAAAAGGGATGGTGACGACC
Found at i:26973225 original size:29 final size:30
Alignment explanation
Indices: 26973191--26973259 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
26973181 ATCAAATTAT
*
26973191 GAAAAGGGATGGTGACAACCATC-AACAAC
1 GAAAAGGGATGGTAACAACCATCAAACAAC
** * *
26973220 GAAAAGGGATGGTAATGACCATCAAACTAT
1 GAAAAGGGATGGTAACAACCATCAAACAAC
26973250 GAAAAGGGAT
1 GAAAAGGGAT
26973260 AGCTTCGGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 20 0.59
30 14 0.41
ACGTcount: A:0.45, C:0.14, G:0.26, T:0.14
Consensus pattern (30 bp):
GAAAAGGGATGGTAACAACCATCAAACAAC
Found at i:26973282 original size:89 final size:89
Alignment explanation
Indices: 26973158--26973390 Score: 340
Period size: 89 Copynumber: 2.6 Consensus size: 89
26973148 ACTGACGAAT
* * * *
26973158 TATGAAAATGGATAGCTTCAGCTATCAAATTATGAAAAGGGATGGTGACAACCATCAACAACGAA
1 TATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAATGGATGGTGACAACCATCAACAACAAA
* *
26973223 AAGGGATGGTAATGACCATCAAAC
66 AAGGGATGGTAACGACCATCAAAA
*** *
26973247 TATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAATGGATGGTGACGTTCATCAACTACAAA
1 TATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAATGGATGGTGACAACCATCAACAACAAA
*
26973312 AAGGGATGGTGACGACCATCAAAA
66 AAGGGATGGTAACGACCATCAAAA
* * *
26973336 TATGAAAAGGGATAGCTTCGACTATCAAACTATGGAAATGGATGGTGACAACCAT
1 TATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAATGGATGGTGACAACCAT
26973391 TGTGATTCTA
Statistics
Matches: 127, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
89 127 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (89 bp):
TATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAATGGATGGTGACAACCATCAACAACAAA
AAGGGATGGTAACGACCATCAAAA
Found at i:26980573 original size:29 final size:29
Alignment explanation
Indices: 26980540--26980641 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
26980530 TGACGAGATC
*
26980540 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
26980569 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
* * *
26980598 GGCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
**
26980627 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
26980642 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAA
Found at i:26988647 original size:29 final size:29
Alignment explanation
Indices: 26988614--26988715 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
26988604 TGACGAGATC
*
26988614 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
26988643 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
* * *
26988672 GGCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
**
26988701 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
26988716 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAA
Found at i:26991502 original size:20 final size:20
Alignment explanation
Indices: 26991479--26991536 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
26991469 TAAACATGGT
*
26991479 ATGTATCATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
26991499 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
26991519 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
26991537 CTGTATTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:26991646 original size:24 final size:24
Alignment explanation
Indices: 26991588--26991752 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
26991578 GAGGAAGTGA
26991588 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26991612 -AAAGGGATTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
26991635 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
26991658 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26991681 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
26991705 AAAAAGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26991729 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26991753 ATGATAAAGC
Statistics
Matches: 129, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
22 12 0.09
23 42 0.33
24 64 0.50
25 11 0.09
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:26991663 original size:46 final size:47
Alignment explanation
Indices: 26991588--26991752 Score: 244
Period size: 46 Copynumber: 3.5 Consensus size: 47
26991578 GAGGAAGTGA
*
26991588 AAAAGGGCTTATGCCCCAGTTATTAAAGGGATTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
26991635 AAAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
* * *
26991681 AAAAGGGCTTTTGCCCCAGTTATTAAAAAGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
*
26991729 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26991753 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
46 44 0.41
47 23 0.21
48 30 0.28
49 11 0.10
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:26991984 original size:31 final size:31
Alignment explanation
Indices: 26991946--26992009 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
26991936 CGTTTACAGT
26991946 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* **
26991977 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
26992008 AA
1 AA
26992010 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:27004283 original size:23 final size:23
Alignment explanation
Indices: 27004257--27004300 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
27004247 TAAAAAATAT
27004257 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
** *
27004280 TTTATTTTTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
27004301 AAATGGTAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:27008307 original size:6 final size:6
Alignment explanation
Indices: 27008277--27008351 Score: 73
Period size: 6 Copynumber: 12.3 Consensus size: 6
27008267 AAGAAATATT
* *
27008277 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* *
27008325 ATTAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
27008352 GTGAATGCAA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
5 3 0.05
6 48 0.86
7 3 0.05
8 2 0.04
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:27008622 original size:27 final size:26
Alignment explanation
Indices: 27008574--27008625 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
27008564 GCGAGGCTGC
*
27008574 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
27008600 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
27008626 TTACAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:27008930 original size:54 final size:54
Alignment explanation
Indices: 27008871--27009094 Score: 247
Period size: 54 Copynumber: 4.1 Consensus size: 54
27008861 GGATAAAATG
* * *
27008871 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCTTAC-AGGAGTATTTCA
1 GTAATTTTACCCCACAGGGGTATTTCGATAATTCTACCCTACAAGG-GTATTTCA
* * * *
27008925 GTAATTCTACCCCACAGGGGTATTTCGTTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTTTACCCCACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
* * * * *
27008979 GTAATTTTACCCTACAGGGGTATTT-TAGTAATTCCACCCTACAGGGGTATTTCG
1 GTAATTTTACCCCACAGGGGTATTTCGA-TAATTCTACCCTACAAGGGTATTTCA
* * * * *
27009033 GT-ATTTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTTA
1 GTAATTT-TACCCCACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
27009087 GTAATTTT
1 GTAATTTT
27009095 GTAAATCGAG
Statistics
Matches: 144, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
53 4 0.03
54 133 0.92
55 7 0.05
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (54 bp):
GTAATTTTACCCCACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
Found at i:27009023 original size:81 final size:81
Alignment explanation
Indices: 27008874--27009092 Score: 298
Period size: 81 Copynumber: 2.7 Consensus size: 81
27008864 TAAAATGGTA
* * * * * * * *
27008874 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTTAGTAATTCCACCCC
*
27008938 ACAGGGGTATTTCGTT
66 ACAGGGGTATTTCGGT
*
27008954 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTTAGTAATTCCACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTTAGTAATTCCACCCC
27009019 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * *
27009035 ATTTCTACCCTACAGGGGTATTTTGGT-ATTTCTACCCTACAAGGGTATTTTAGTAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTT-TACCCTACAGGGGTATTTTAGTAATT
27009093 TTGTAAATCG
Statistics
Matches: 124, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
80 8 0.06
81 116 0.94
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTTAGTAATTCCACCCC
ACAGGGGTATTTCGGT
Found at i:27009085 original size:27 final size:27
Alignment explanation
Indices: 27008874--27009084 Score: 221
Period size: 27 Copynumber: 7.9 Consensus size: 27
27008864 TAAAATGGTA
* * *
27008874 ATTT-TACCCCACAAGGGTATCTCGAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
27008900 AATTCTACCTTAC-AGGAGTATTTCAGT
1 ATTTCTACCCTACAAGG-GTATTTCGGT
* * * *
27008927 AATTCTACCCCACAGGGGTATTTCGTT
1 ATTTCTACCCTACAAGGGTATTTCGGT
27008954 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* **
27008981 AATTT-TACCCTACAGGGGTATTTTAGT
1 -ATTTCTACCCTACAAGGGTATTTCGGT
* * *
27009008 AATTCCACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
27009035 ATTTCTACCCTACAGGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
27009062 ATTTCTACCCTACAAGGGTATTT
1 ATTTCTACCCTACAAGGGTATTT
27009085 TAGTAATTTT
Statistics
Matches: 154, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
26 9 0.06
27 139 0.90
28 6 0.04
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (27 bp):
ATTTCTACCCTACAAGGGTATTTCGGT
Found at i:27009160 original size:27 final size:26
Alignment explanation
Indices: 27009124--27009444 Score: 219
Period size: 27 Copynumber: 11.9 Consensus size: 26
27009114 GTAATTCTGT
*
27009124 AAATTAAGGGTACTTTGGTAATTTTAC
1 AAATT-AGGGTATTTTGGTAATTTTAC
* ***
27009151 AAGTTGAGGGTATTTCAATAATTTTAC
1 AAATT-AGGGTATTTTGGTAATTTTAC
** * ** *
27009178 AGGTCGAGGGTATTTCAGTAATTTCAC
1 AAAT-TAGGGTATTTTGGTAATTTTAC
27009205 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAATTA-GGGTATTTTGGTAATTTTAC
* *
27009232 AAACTAAGGGTATTTTGATAATTTTAC
1 AAA-TTAGGGTATTTTGGTAATTTTAC
** *
27009259 AAACCAGGGGTATTTTGGTAGTTTTAC
1 AAATTA-GGGTATTTTGGTAATTTTAC
*
27009286 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAATTA-GGGTATTTTGGTAATTTTAC
** **
27009313 AAACCAGGGATATTTTGGTAATTTTGT
1 AAATTAGGG-TATTTTGGTAATTTTAC
** *
27009340 AAACCAAGCGTATTTTGGTAATTTTAC
1 AAA-TTAGGGTATTTTGGTAATTTTAC
** ** *
27009367 AAACCAGGGGTATTTTGGGGATTTTAT
1 AAATTA-GGGTATTTTGGTAATTTTAC
** * *
27009394 AAACCAATGGTATTTTAGTAATTTTAC
1 AAA-TTAGGGTATTTTGGTAATTTTAC
**
27009421 AAACCAGGGGTATTTTGGTAATTT
1 AAATTA-GGGTATTTTGGTAATTT
27009445 GGTAAACTAA
Statistics
Matches: 240, Mismatches: 45, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
26 9 0.04
27 223 0.93
28 8 0.03
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (26 bp):
AAATTAGGGTATTTTGGTAATTTTAC
Found at i:27009161 original size:81 final size:81
Alignment explanation
Indices: 27009075--27009337 Score: 201
Period size: 81 Copynumber: 3.2 Consensus size: 81
27009065 TCTACCCTAC
** **
27009075 AAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAA-TTCTGTAAATTAAGGGTACTT
1 AAGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTC-ACAAATTAAGGGTACTT
**
27009139 TGGTAATTTTACAAGTT
65 TGGTAATTTTACAAACT
* * * ** *** * *
27009156 GAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTT
1 AAGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATTAAGGGTACTTT
27009221 GGTAATTTTACAAACT
66 GGTAATTTTACAAACT
* ***** * * * * *
27009237 AAGGGTATTTT-GATAATTTTACAAA-CCAGGGGTATTTTGGTAGTTTTACAAACTAGGGGTATT
1 AAGGGTATTTTAG-TAATTTTACAAATCGA-GGGTAAAACAGTAATTTCACAAATTAAGGGTACT
27009300 TTGGTAATTTTACAAAC-
64 TTGGTAATTTTACAAACT
* *
27009317 CAGGGATATTTTGGTAATTTT
1 AAGGG-TATTTTAGTAATTTT
27009338 GTAAACCAAG
Statistics
Matches: 149, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
80 6 0.04
81 139 0.93
82 4 0.03
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (81 bp):
AAGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATTAAGGGTACTTT
GGTAATTTTACAAACT
Found at i:27009451 original size:27 final size:27
Alignment explanation
Indices: 27009185--27009444 Score: 331
Period size: 27 Copynumber: 9.6 Consensus size: 27
27009175 TACAGGTCGA
** * **
27009185 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
27009212 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
27009239 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
27009266 GGGTATTTTGGTAGTTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
27009293 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
27009320 GGATATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
27009347 GCGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
27009374 GGGTATTTTGGGGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
27009401 TGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
27009428 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
27009445 GGTAAACTAA
Statistics
Matches: 198, Mismatches: 35, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 198 1.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:27012143 original size:27 final size:27
Alignment explanation
Indices: 27012124--27012403 Score: 346
Period size: 27 Copynumber: 10.4 Consensus size: 27
27012114 CCTCAAATTG
27012124 TAAAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* * *
27012151 CAGAATTACCATTTTACCCTCAATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* * *
27012178 TAGAATTACCGTTTTACCCTCGATTTT
1 TAAAATTACCATTTTACCCTCGATTTA
*
27012205 TAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* * *
27012232 TAGAATTACCGTTTTACCCTTGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* * *
27012259 CAAAATTACCGTTTTACTCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* *
27012286 TAAAATTACTATTTTACCCTTGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
27012313 TAAAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
*
27012340 TAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* * * * * *
27012367 CAGAATTATCGTTTTACCCTTGGTTTA
1 TAAAATTACCATTTTACCCTCGATTTA
*
27012394 -CAAATTACCA
1 TAAAATTACCA
27012404 AAATACCCCT
Statistics
Matches: 221, Mismatches: 32, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
26 6 0.03
27 215 0.97
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
TAAAATTACCATTTTACCCTCGATTTA
Found at i:27012413 original size:27 final size:26
Alignment explanation
Indices: 27012383--27012494 Score: 102
Period size: 27 Copynumber: 4.2 Consensus size: 26
27012373 TATCGTTTTA
27012383 CCCTTGGTTTACAAATTACCAAAATAC
1 CCCTTGGTTTA-AAATTACCAAAATAC
* * *
27012410 CCCTAGTTTGTAAAATTACTAAAATA-
1 CCCTTGGTT-TAAAATTACCAAAATAC
27012436 CCCTTGGTTTATAAAATTACCAAAATA-
1 CCCTTGG-TT-TAAAATTACCAAAATAC
* * *
27012463 CCCATGGCTTGTAAAATTACTAAAATGC
1 CCCTTGG-TT-TAAAATTACCAAAATAC
27012491 CCCT
1 CCCT
27012495 GATTTATGAA
Statistics
Matches: 69, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
26 5 0.07
27 59 0.86
28 5 0.07
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (26 bp):
CCCTTGGTTTAAAATTACCAAAATAC
Found at i:27012475 original size:54 final size:54
Alignment explanation
Indices: 27012381--27012508 Score: 177
Period size: 54 Copynumber: 2.4 Consensus size: 54
27012371 ATTATCGTTT
* * *
27012381 TACCCTTGGTTTA-CAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAATACCCATAGCTTGTAAAATTACTAAAA
*
27012434 TACCCTTGGTTTATAAAATTACCAAAATACCCATGGCTTGTAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAATACCCATAGCTTGTAAAATTACTAAAA
* * * *
27012488 TGCCCCTGATTTATGAAATTA
1 TACCCTTGGTTTATAAAATTA
27012509 TTGAAAAACC
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
53 13 0.20
54 53 0.80
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (54 bp):
TACCCTTGGTTTATAAAATTACCAAAATACCCATAGCTTGTAAAATTACTAAAA
Found at i:27012506 original size:27 final size:27
Alignment explanation
Indices: 27012395--27012508 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
27012385 CTTGGTTTAC
*
27012395 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTATA
* * *
27012422 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTATA
* ** *
27012449 AAATTACCAAAATACCCATGGCTTGTA
1 AAATTACCAAAATACCCCTGATTTATA
* * *
27012476 AAATTACTAAAATGCCCCTGATTTATG
1 AAATTACCAAAATACCCCTGATTTATA
27012503 AAATTA
1 AAATTA
27012509 TTGAAAAACC
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTATA
Found at i:27012531 original size:54 final size:54
Alignment explanation
Indices: 27012395--27012545 Score: 155
Period size: 54 Copynumber: 2.8 Consensus size: 54
27012385 CTTGGTTTAC
* * * * *
27012395 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCATCGATTGTAAAATTACTAAAATACCCCTGATTTATA
* * * *
27012449 AAATTACCAAAATACCCATGGCTTGTAAAATTACTAAAATGCCCCTGATTTATG
1 AAATTACCAAAATACCCATCGATTGTAAAATTACTAAAATACCCCTGATTTATA
** *
27012503 AAATTATTGAAAA-ACCC-TCGATTCGTAAAA-TACTGAAATACCC
1 AAATTA-CCAAAATACCCATCGATT-GTAAAATTACTAAAATACCC
27012546 TTGTAGGGTA
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
53 15 0.18
54 63 0.77
55 4 0.05
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCATCGATTGTAAAATTACTAAAATACCCCTGATTTATA
Found at i:27012566 original size:27 final size:27
Alignment explanation
Indices: 27012537--27012752 Score: 315
Period size: 27 Copynumber: 8.0 Consensus size: 27
27012527 GTAAAATACT
* *
27012537 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
27012564 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
27012591 GAAATACCCTTGTATGGTAGAACTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
27012618 GAAATACCCTTGTAGGGTAGAACTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
27012645 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
27012672 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
27012699 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
** * * *
27012726 GCGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
27012753 ATTTTGCCCC
Statistics
Matches: 174, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 174 1.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:27018336 original size:13 final size:13
Alignment explanation
Indices: 27018318--27018343 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27018308 GAGCCATCAT
27018318 CAAAGGAGCGAAG
1 CAAAGGAGCGAAG
27018331 CAAAGGAGCGAAG
1 CAAAGGAGCGAAG
27018344 GAGTTTAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.38, T:0.00
Consensus pattern (13 bp):
CAAAGGAGCGAAG
Found at i:27020131 original size:20 final size:21
Alignment explanation
Indices: 27020085--27020132 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
27020075 GTATTTAAAT
*
27020085 GTTTAATGATAGATTATGAAG
1 GTTTAATGATAGATTATGAAA
27020106 GTTTAATGATAGA-TAT-ACAA
1 GTTTAATGATAGATTATGA-AA
27020126 GTTTAAT
1 GTTTAAT
27020133 AAAGTGATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 1 0.04
20 11 0.44
21 13 0.52
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.40
Consensus pattern (21 bp):
GTTTAATGATAGATTATGAAA
Found at i:27020816 original size:22 final size:23
Alignment explanation
Indices: 27020791--27020840 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
27020781 CTCGTATGAC
* *
27020791 CTTACCG-TTCAGCTTAATAGAG
1 CTTACCGTTTCAGCTCAATAAAG
*
27020813 CTTATCGTTTCAGCTCAATAAAG
1 CTTACCGTTTCAGCTCAATAAAG
27020836 CTTAC
1 CTTAC
27020841 TGTTAATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (23 bp):
CTTACCGTTTCAGCTCAATAAAG
Found at i:27039186 original size:20 final size:21
Alignment explanation
Indices: 27039140--27039186 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
27039130 AGTATTAAAT
*
27039140 GTTTAATGATAGATTATGAAG
1 GTTTAATGATAGATTATGAAA
27039161 GTTTAATGATAGA-TAT-ACAA
1 GTTTAATGATAGATTATGA-AA
27039181 GTTTAA
1 GTTTAA
27039187 CAAAGTGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 1 0.04
20 10 0.42
21 13 0.54
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (21 bp):
GTTTAATGATAGATTATGAAA
Found at i:27041241 original size:8 final size:8
Alignment explanation
Indices: 27041228--27041258 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
27041218 CTAGGTCGGC
27041228 AAAAGCCG
1 AAAAGCCG
27041236 AAAAGCCG
1 AAAAGCCG
*
27041244 AAATGCCG
1 AAAAGCCG
27041252 AAAAGCC
1 AAAAGCC
27041259 AGTATTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:27041538 original size:28 final size:28
Alignment explanation
Indices: 27041506--27041570 Score: 121
Period size: 28 Copynumber: 2.3 Consensus size: 28
27041496 ATGTACTAGA
27041506 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
27041534 ATACCCCTATGTATGCAAAATTACCGTT
1 ATACCCCTATGTATGCAAAATTACCATT
27041562 ATACCCCTA
1 ATACCCCTA
27041571 GGGTTAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:27041719 original size:28 final size:27
Alignment explanation
Indices: 27041686--27041757 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
27041676 CTGGTGGCTA
*
27041686 TGCCACAAATTATCTGTTCTAGTGGCCC
1 TGCCACAAA-TATCTGTTCTAGTGGCAC
* * *
27041714 TGCCACATATATCTGTTCTGGTGGCAT
1 TGCCACAAATATCTGTTCTAGTGGCAC
27041741 TGCCACAAAATATCTGT
1 TGCCAC-AAATATCTGT
27041758 ATCTGGTGAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTAGTGGCAC
Found at i:27041737 original size:27 final size:27
Alignment explanation
Indices: 27041676--27041765 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 27
27041666 AGGAAGCGTC
*
27041676 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGCAATGCCACAAA-TATCTGTT
* ** *
27041704 CTAGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCAATGCCACAAATATCTGTT
*
27041731 CTGGTGGCATTGCCACAAAATATCTGTAT
1 CTGGTGGCAATGCCAC-AAATATCTGT-T
27041760 CTGGTG
1 CTGGTG
27041766 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
27 21 0.40
28 24 0.46
29 7 0.13
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCAATGCCACAAATATCTGTT
Found at i:27041776 original size:29 final size:28
Alignment explanation
Indices: 27041686--27041767 Score: 85
Period size: 27 Copynumber: 2.9 Consensus size: 28
27041676 CTGGTGGCTA
* * * **
27041686 TGCCACAAATTATCTGTTCTAGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAT
* *
27041714 TGCCAC-ATATATCTGTTCTGGTGGCAT
1 TGCCACAAAATATCTGTTCTGGTGACAT
27041741 TGCCACAAAATATCTGTATCTGGTGAC
1 TGCCACAAAATATCTGT-TCTGGTGAC
27041768 TCTGTCACAT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
27 22 0.49
28 15 0.33
29 8 0.18
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAT
Found at i:27041784 original size:55 final size:56
Alignment explanation
Indices: 27041676--27041790 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
27041666 AGGAAGCGTC
* *
27041676 CTGGTGGCTATGCCACAAATTATCTGTTCTAGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACATATATCTGTAT
* * * *
27041731 CTGGTGGC-ATTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTAGTGACCCTGCCACATATATCTGTAT
27041787 CTGG
1 CTGG
27041791 CAGCCATACT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACATATATCTGTAT
Found at i:27042780 original size:23 final size:23
Alignment explanation
Indices: 27042750--27042864 Score: 103
Period size: 23 Copynumber: 5.1 Consensus size: 23
27042740 AGCTTATTGT
* *
27042750 TTTCAGCTCATTGGAGCTTACCG
1 TTTCAGCTCAATAGAGCTTACCG
** *
27042773 TTTCAGCT-TGTATGAGCTTACTG
1 TTTCAGCTCAATA-GAGCTTACCG
* *
27042796 TTT-AGCTCGATAGAGCTTATC-
1 TTTCAGCTCAATAGAGCTTACCG
* *
27042817 ATTCAGCTCAATAGAGCTTATCGG
1 TTTCAGCTCAATAGAGCTTA-CCG
27042841 TTT-AGCTCAATAGAGCTTACCG
1 TTTCAGCTCAATAGAGCTTACCG
27042863 TT
1 TT
27042865 CATCAACTCA
Statistics
Matches: 73, Mismatches: 14, Indels: 11
0.74 0.14 0.11
Matches are distributed among these distances:
21 2 0.03
22 31 0.42
23 38 0.52
24 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.37
Consensus pattern (23 bp):
TTTCAGCTCAATAGAGCTTACCG
Found at i:27042811 original size:22 final size:22
Alignment explanation
Indices: 27042786--27042860 Score: 89
Period size: 22 Copynumber: 3.4 Consensus size: 22
27042776 CAGCTTGTAT
*
27042786 GAGCTTACTGTTTAGCTCGATA
1 GAGCTTACTGTTTAGCTCAATA
* *
27042808 GAGCTTA-TCATTCAGCTCAATA
1 GAGCTTACT-GTTTAGCTCAATA
*
27042830 GAGCTTATCGGTTTAGCTCAATA
1 GAGCTTA-CTGTTTAGCTCAATA
27042853 GAGCTTAC
1 GAGCTTAC
27042861 CGTTCATCAA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
21 1 0.02
22 25 0.57
23 18 0.41
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (22 bp):
GAGCTTACTGTTTAGCTCAATA
Found at i:27042813 original size:45 final size:46
Alignment explanation
Indices: 27042740--27042864 Score: 121
Period size: 45 Copynumber: 2.7 Consensus size: 46
27042730 ATCTCATAAT
* * * * **
27042740 AGCTTATTGTTTTCAGCTCATTGGAGCTTACCGTTTCAGCT-TGTATG
1 AGCTTATCGGTTT-AGCTCAATAGAGCTTACCGTTTCAGCTCAATA-G
* * * *
27042787 AGCTTA-CTGTTTAGCTCGATAGAGCTTATC-ATTCAGCTCAATAG
1 AGCTTATCGGTTTAGCTCAATAGAGCTTACCGTTTCAGCTCAATAG
27042831 AGCTTATCGGTTTAGCTCAATAGAGCTTACCGTT
1 AGCTTATCGGTTTAGCTCAATAGAGCTTACCGTT
27042865 CATCAACTCA
Statistics
Matches: 61, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
44 14 0.23
45 37 0.61
46 4 0.07
47 6 0.10
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (46 bp):
AGCTTATCGGTTTAGCTCAATAGAGCTTACCGTTTCAGCTCAATAG
Found at i:27047378 original size:30 final size:30
Alignment explanation
Indices: 27047343--27047400 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
27047333 CACGGCCATG
27047343 ACACACAGGCATGTGG-TCTACCCGTGTGTC
1 ACACACAGGCATGTGGATC-ACCCGTGTGTC
*
27047373 ACACACAGGCGTGTGGATCACCCGTGTG
1 ACACACAGGCATGTGGATCACCCGTGTG
27047401 GAAGTGCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (30 bp):
ACACACAGGCATGTGGATCACCCGTGTGTC
Found at i:27050936 original size:4 final size:4
Alignment explanation
Indices: 27050927--27050952 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
27050917 AAAGACAATA
27050927 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
27050953 TAATAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:27058816 original size:30 final size:30
Alignment explanation
Indices: 27058761--27058920 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
27058751 ATAGTGAATC
27058761 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
27058790 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
27058820 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
27058849 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
27058877 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
27058907 CGCACACTTAGTGC
1 CGCACACTTAGTGC
27058921 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:27058853 original size:59 final size:57
Alignment explanation
Indices: 27058761--27058920 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
27058751 ATAGTGAATC
*
27058761 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
27058820 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
27058877 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
27058921 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:27062669 original size:40 final size:40
Alignment explanation
Indices: 27062561--27062770 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
27062551 CGGGATTTAA
* * * * *
27062561 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
27062601 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27062641 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27062681 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27062721 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27062761 CCGGATATAT
1 CCGGATATAT
27062771 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:27074983 original size:40 final size:40
Alignment explanation
Indices: 27074939--27075082 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
27074929 GTTCAAAACA
* * ***
27074939 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
27074979 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
** *
27075019 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
27075058 CCTTCGGG-CTTAGCCCGGATATCAC
1 CCTTCGGGACTTAGCCCGGATATCAC
27075083 TCGAACATTC
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 54 0.57
40 40 0.43
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:27075051 original size:39 final size:39
Alignment explanation
Indices: 27074969--27075082 Score: 192
Period size: 39 Copynumber: 2.9 Consensus size: 39
27074959 TATGGTAACC
* *
27074969 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
27075009 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
27075048 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
27075083 TCGAACATTC
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 54 0.76
40 17 0.24
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:27077133 original size:40 final size:39
Alignment explanation
Indices: 27076973--27077135 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
27076963 TGTGAATGAG
*
27076973 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
27077012 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
27077051 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
27077090 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
27077130 TGTGCG
1 TGTGCG
27077136 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:27077151 original size:40 final size:39
Alignment explanation
Indices: 27076973--27077166 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
27076963 TGTGAATGAG
* *
27076973 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
27077012 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
27077051 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
27077090 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
27077130 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
27077167 GTTTGAACGA
Statistics
Matches: 140, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 41 0.29
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:27077193 original size:79 final size:78
Alignment explanation
Indices: 27076990--27077204 Score: 218
Period size: 78 Copynumber: 2.7 Consensus size: 78
27076980 ATTGTGATAT
** * * *
27076990 CCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
** *
27077055 CGAGCTATGATAT
66 CGAGCTACCATAA
** * *
27077068 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATTGT
* *
27077133 GCGGGTTACCATAA
65 GCGAGCTACCATAA
* ** *
27077147 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
27077205 TATGTGATTT
Statistics
Matches: 118, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 48 0.41
79 45 0.38
80 24 0.20
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
CGAGCTACCATAA
Found at i:27083799 original size:40 final size:39
Alignment explanation
Indices: 27083639--27083801 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
27083629 TGTGAATGAG
*
27083639 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
27083678 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
27083717 TGTGCGAGCTATGATATTCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
27083756 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
27083796 TGTGCG
1 TGTGCG
27083802 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:27083817 original size:40 final size:39
Alignment explanation
Indices: 27083639--27083832 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
27083629 TGTGAATGAG
* *
27083639 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
27083678 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
27083717 TGTGCGAGCTATGATATTCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
27083756 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
27083796 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
27083833 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:27086714 original size:46 final size:46
Alignment explanation
Indices: 27086664--27086835 Score: 208
Period size: 45 Copynumber: 3.7 Consensus size: 46
27086654 TGGTTGAGCA
*
27086664 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
27086710 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
27086757 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
27086803 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
27086836 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
45 34 0.32
46 30 0.28
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:27087096 original size:19 final size:20
Alignment explanation
Indices: 27087059--27087096 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
27087049 ATAAGGTGGT
27087059 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
27087079 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
27087097 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:27089587 original size:93 final size:93
Alignment explanation
Indices: 27089419--27089590 Score: 238
Period size: 93 Copynumber: 1.8 Consensus size: 93
27089409 GGATGGTTGA
* * * *
27089419 GCATTCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACATCCGAACTCGTTGAGT
27089484 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* ** * *
27089512 GCATCCGAACTCGTTGCGTTGAGTCCGAGTTCACTCATGGATGTGAACGT-CTAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACATCCGAA-CTCGTTGAG
*
27089576 TTGAGTTCGAGTTCG
65 TTGAGTCCGAGTTCG
27089591 CTTATGGCCG
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
92 3 0.04
93 65 0.96
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACATCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:27095519 original size:24 final size:24
Alignment explanation
Indices: 27095488--27095652 Score: 228
Period size: 24 Copynumber: 7.0 Consensus size: 24
27095478 GCTTTATCAT
* *
27095488 ATAACTGGAGCCT-AGCCTCTTTTA
1 ATAACTGGGGCATAAGCC-CTTTTA
* *
27095512 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
27095536 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
27095559 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
27095583 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
27095607 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
27095630 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
27095653 GCACTTCCTC
Statistics
Matches: 128, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
23 43 0.34
24 81 0.63
25 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:27095604 original size:71 final size:71
Alignment explanation
Indices: 27095488--27095653 Score: 253
Period size: 71 Copynumber: 2.3 Consensus size: 71
27095478 GCTTTATCAT
* * * *
27095488 ATAACTGGAGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAG
1 ATAACTGGGGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAG
27095552 CCCTTTA
65 CCCTTTA
* **
27095559 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
27095624 CCTTTA
66 CCTTTA
27095630 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
27095654 CACTTCCTCC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
71 83 0.95
72 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:27095653 original size:47 final size:48
Alignment explanation
Indices: 27095488--27095652 Score: 228
Period size: 47 Copynumber: 3.5 Consensus size: 48
27095478 GCTTTATCAT
* * * *
27095488 ATAACTGGAGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
27095536 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
27095583 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
27095630 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
27095653 GCACTTCCTC
Statistics
Matches: 105, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
47 68 0.65
48 33 0.31
49 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:27095724 original size:9 final size:9
Alignment explanation
Indices: 27095710--27095766 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
27095700 ATCTCATGTG
27095710 CATATCATA
1 CATATCATA
*
27095719 CATATCATGTG
1 CATATCA--TA
27095730 CATATCATA
1 CATATCATA
* *
27095739 CATGTCATGTG
1 CATATCA--TA
27095750 CATATCATA
1 CATATCATA
27095759 CATATCAT
1 CATATCAT
27095767 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:27095726 original size:20 final size:20
Alignment explanation
Indices: 27095698--27095768 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
27095688 GCATTTATGA
*
27095698 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
27095718 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
27095738 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
27095758 ACATATCATGT
1 ACATATCATGT
27095769 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:27095733 original size:11 final size:11
Alignment explanation
Indices: 27095703--27095757 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
27095693 TATGAACATC
27095703 TCATGTGCATA
1 TCATGTGCATA
*
27095714 TCA--TACATA
1 TCATGTGCATA
27095723 TCATGTGCATA
1 TCATGTGCATA
* *
27095734 TCA--TACATG
1 TCATGTGCATA
27095743 TCATGTGCATA
1 TCATGTGCATA
27095754 TCAT
1 TCAT
27095758 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:27095847 original size:25 final size:24
Alignment explanation
Indices: 27095805--27095852 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
27095795 ATATATAAAC
* * *
27095805 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
27095830 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
27095853 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:27097117 original size:27 final size:27
Alignment explanation
Indices: 27097087--27097426 Score: 382
Period size: 27 Copynumber: 12.6 Consensus size: 27
27097077 AGGGTAGTTT
*
27097087 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
27097114 AGTAATTCTATAAATCAATGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
27097141 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
27097168 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
27097195 GGTAATTCTGTAAATCGAGGGGAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
27097222 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
27097249 GGTAATTATGTAAATTG-GGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
27097275 AGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
27097302 ACTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
27097329 GGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
27097356 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
27097383 AGTAATTCTAT-AACCTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
27097410 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
27097427 GGAGTACTTT
Statistics
Matches: 269, Mismatches: 37, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
26 27 0.10
27 237 0.88
28 5 0.02
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:27100218 original size:24 final size:24
Alignment explanation
Indices: 27100138--27100280 Score: 211
Period size: 24 Copynumber: 6.0 Consensus size: 24
27100128 GCTTTATCAT
* *
27100138 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
27100163 ATAACTGGGGCAAAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
27100186 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
27100210 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
27100234 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
27100257 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
27100281 CACTTCCTCC
Statistics
Matches: 110, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 44 0.40
24 54 0.49
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:27100280 original size:47 final size:48
Alignment explanation
Indices: 27100138--27100280 Score: 220
Period size: 47 Copynumber: 3.0 Consensus size: 48
27100128 GCTTTATCAT
* *
27100138 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTG
*
27100186 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
27100234 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
27100281 CACTTCCTCC
Statistics
Matches: 89, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 58 0.65
48 31 0.35
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
Found at i:27100351 original size:9 final size:9
Alignment explanation
Indices: 27100337--27100393 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
27100327 ATCTCATGTG
27100337 CATATCATA
1 CATATCATA
*
27100346 CATATCATGTG
1 CATATCA--TA
27100357 CATATCATA
1 CATATCATA
* *
27100366 CATGTCATGTG
1 CATATCA--TA
27100377 CATATCATA
1 CATATCATA
27100386 CATATCAT
1 CATATCAT
27100394 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:27100353 original size:20 final size:20
Alignment explanation
Indices: 27100325--27100395 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
27100315 GCATTTATGA
*
27100325 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
27100345 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
27100365 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
27100385 ACATATCATGT
1 ACATATCATGT
27100396 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:27100360 original size:11 final size:11
Alignment explanation
Indices: 27100330--27100384 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
27100320 TATGAACATC
27100330 TCATGTGCATA
1 TCATGTGCATA
*
27100341 TCA--TACATA
1 TCATGTGCATA
27100350 TCATGTGCATA
1 TCATGTGCATA
* *
27100361 TCA--TACATG
1 TCATGTGCATA
27100370 TCATGTGCATA
1 TCATGTGCATA
27100381 TCAT
1 TCAT
27100385 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:27100473 original size:24 final size:24
Alignment explanation
Indices: 27100432--27100478 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
27100422 ATATATAAAC
* * *
27100432 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
27100456 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
27100479 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:27101740 original size:27 final size:27
Alignment explanation
Indices: 27101711--27102046 Score: 405
Period size: 27 Copynumber: 12.6 Consensus size: 27
27101701 GGGTATTTTA
* *
27101711 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
27101738 GTAATTCTATAAATC-AAGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
27101764 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
27101791 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
27101818 GTAATTCTGTAAATCGA-GGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
27101844 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
27101871 GTAATTATGTAAATTG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
27101897 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
27101924 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
27101951 GTAATTC-GTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
27101977 GTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
27102004 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
27102031 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
27102047 GGAGTACTTT
Statistics
Matches: 268, Mismatches: 33, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
26 97 0.36
27 168 0.63
28 3 0.01
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:27101783 original size:53 final size:54
Alignment explanation
Indices: 27101711--27102046 Score: 405
Period size: 53 Copynumber: 6.3 Consensus size: 54
27101701 GGGTATTTTA
* * * *
27101711 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATC-AAGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* *
27101764 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * * * *
27101818 GTAATTCTGTAAATCGA-GGTAAAACGATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * * **
27101871 GTAATTATGTAAATTG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* *
27101924 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTC-GTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* ** * *
27101977 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACG
27102031 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
27102047 GGAGTACTTT
Statistics
Matches: 242, Mismatches: 34, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
53 174 0.72
54 68 0.28
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:27101822 original size:80 final size:82
Alignment explanation
Indices: 27101711--27102046 Score: 420
Period size: 80 Copynumber: 4.2 Consensus size: 82
27101701 GGGTATTTTA
* *
27101711 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATC-AAGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAACAGTAATTCTATA
*
27101775 AATC-GAGGGTAAAATG
66 AATCTGAGGGTAAAACG
* * * *
27101791 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCG-AGGTAAAAC-GATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAACAG-TAATTCTAT
* *
27101854 AAATC-GGGGGTAAAATG
65 AAATCTGAGGGTAAAACG
* * * * * *
27101871 GTAATTATGTAAATTG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAACAGTAATTCTATA
27101935 AA-CTGAGGGTAAAACG
66 AATCTGAGGGTAAAACG
* * * *
27101951 GTAATTC-GTAAATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTAT-
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAACAGTAATTCTATA
*
27102014 AACCTGAGGGTAAAACG
66 AATCTGAGGGTAAAACG
27102031 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
27102047 GGAGTACTTT
Statistics
Matches: 224, Mismatches: 24, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
79 36 0.16
80 180 0.80
81 8 0.04
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (82 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAACAGTAATTCTATA
AATCTGAGGGTAAAACG
Found at i:27104538 original size:30 final size:31
Alignment explanation
Indices: 27104498--27104560 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
27104488 CCTTTTCATA
27104498 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
27104529 TTTCA-ATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
27104559 TT
1 TT
27104561 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:27104852 original size:24 final size:24
Alignment explanation
Indices: 27104749--27104913 Score: 248
Period size: 23 Copynumber: 7.0 Consensus size: 24
27104739 GCTTTATCAT
*
27104749 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
27104774 ATAACTGGGGCAAAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
27104797 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
27104820 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
27104844 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
27104868 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
27104891 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
27104914 GCACTTCCTC
Statistics
Matches: 131, Mismatches: 5, Indels: 9
0.90 0.03 0.06
Matches are distributed among these distances:
22 3 0.02
23 59 0.45
24 57 0.44
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:27104883 original size:71 final size:70
Alignment explanation
Indices: 27104749--27104914 Score: 271
Period size: 71 Copynumber: 2.3 Consensus size: 70
27104739 GCTTTATCAT
* *
27104749 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAG
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAG
27104813 CCCTTTA
64 CCCTTTA
*
27104820 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTT-ATAACTGGGGCATAAGC
27104885 CCTTTA
65 CCTTTA
27104891 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
27104915 CACTTCCTCC
Statistics
Matches: 90, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
70 31 0.34
71 59 0.66
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (70 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAGCC
CTTTA
Found at i:27104985 original size:9 final size:9
Alignment explanation
Indices: 27104971--27105027 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
27104961 ATCTCATGTG
27104971 CATATCATA
1 CATATCATA
*
27104980 CATATCATGTG
1 CATATCA--TA
27104991 CATATCATA
1 CATATCATA
* *
27105000 CATGTCATGTG
1 CATATCA--TA
27105011 CATATCATA
1 CATATCATA
27105020 CATATCAT
1 CATATCAT
27105028 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:27104987 original size:20 final size:20
Alignment explanation
Indices: 27104959--27105029 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
27104949 GCATTTATGA
*
27104959 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
27104979 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
27104999 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
27105019 ACATATCATGT
1 ACATATCATGT
27105030 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:27104994 original size:11 final size:11
Alignment explanation
Indices: 27104964--27105018 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
27104954 TATGAACATC
27104964 TCATGTGCATA
1 TCATGTGCATA
*
27104975 TCA--TACATA
1 TCATGTGCATA
27104984 TCATGTGCATA
1 TCATGTGCATA
* *
27104995 TCA--TACATG
1 TCATGTGCATA
27105004 TCATGTGCATA
1 TCATGTGCATA
27105015 TCAT
1 TCAT
27105019 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:27105107 original size:24 final size:24
Alignment explanation
Indices: 27105066--27105112 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
27105056 ATATATAAAC
* * *
27105066 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
27105090 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
27105113 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:27106375 original size:27 final size:27
Alignment explanation
Indices: 27106346--27106683 Score: 389
Period size: 27 Copynumber: 12.6 Consensus size: 27
27106336 GGGTAGTTTA
* *
27106346 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
27106373 GTAATTCTATAAATCAATGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
27106400 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
27106427 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
27106454 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
27106481 ATAATTATGTAAATCG-GGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
27106507 GTAATTATGTAAATTGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
27106534 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
27106561 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
27106588 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
27106615 GTAATT-T-TACAATCGAGGGTAAAATA
1 GTAATTCTGTA-AATCGAGGGTAAAACG
* *
27106641 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
27106668 TTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
27106684 GGAGTACTTT
Statistics
Matches: 272, Mismatches: 31, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
25 2 0.01
26 47 0.17
27 218 0.80
28 5 0.02
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:27106698 original size:80 final size:80
Alignment explanation
Indices: 27106346--27106714 Score: 340
Period size: 80 Copynumber: 4.6 Consensus size: 80
27106336 GGGTAGTTTA
* * ** * * *
27106346 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATA-AATCAATGGTAAAACAGTAATTCTAT
1 GTAATTCTGTAAATCAAGGGTAAAATGGTAATT-T-TACAATCGAGGGTAAAATAGTAATTCTAT
*
27106410 AAA-TCGAGGGTAAAATG
64 AAACT-GAGGGTAAAACG
* * * * * *
27106427 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA-AATCGAGGGTAAAA-CGATAATTATG
1 GTAATTCTGTAAATCAAGGGTAAAATGGTAATT-T-TACAATCGAGGGTAAAATAG-TAATTCTA
*
27106490 TAAA-TCG-GGGTAAAATG
63 TAAACT-GAGGGTAAAACG
* *** *
27106507 GTAATTATGTAAATTGGGGGTAAAATGGTAATTCTGTA-AATCGAGGGTAAAATAGTAATTCTGT
1 GTAATTCTGTAAATCAAGGGTAAAATGGTAATT-T-TACAATCGAGGGTAAAATAGTAATTCTAT
27106571 AAACTGAGGGTAAAACG
64 AAACTGAGGGTAAAACG
*
27106588 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACAATCGAGGGTAAAATAGTAATTCTATAA
1 GTAATTCTGTAAATCAAGGGTAAAATGGTAATTTTACAATCGAGGGTAAAATAGTAATTCTATAA
*
27106653 CCTGAGGGTAAAACG
66 ACTGAGGGTAAAACG
* * ***
27106668 TTAATTCTGTAAATC-GGGAGTACTTTGGTAATTTTACAAGTCGAGGG
1 GTAATTCTGTAAATCAAGG-GTAAAATGGTAATTTTACAA-TCGAGGG
27106715 CATTTCAGTA
Statistics
Matches: 251, Mismatches: 30, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
79 4 0.02
80 141 0.56
81 106 0.42
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (80 bp):
GTAATTCTGTAAATCAAGGGTAAAATGGTAATTTTACAATCGAGGGTAAAATAGTAATTCTATAA
ACTGAGGGTAAAACG
Found at i:27106700 original size:107 final size:107
Alignment explanation
Indices: 27106346--27106683 Score: 425
Period size: 107 Copynumber: 3.1 Consensus size: 107
27106336 GGGTAGTTTA
* * * * * *
27106346 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAATGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATATA
27106411 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
66 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
* * * * * *
27106453 GGTAATTCTATAAATCGAGGGTAAAACGATAATTATGTAAATC-GGGGTAAAATGGTAATTATGT
1 -GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATAT
* * * *
27106517 AAATTGGGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATA
65 AAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA-C
27106561 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGGTAATT-T-T
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATAT
* *
27106623 ACAATCGAGGGTAAAATAGTAATTCTAT-AACCTGAGGGTAAAAC
65 A-AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAAC
27106667 GTTAATTCTGTAAATCG
1 G-TAATTCTGTAAATCG
27106684 GGAGTACTTT
Statistics
Matches: 196, Mismatches: 27, Indels: 15
0.82 0.11 0.06
Matches are distributed among these distances:
106 7 0.04
107 137 0.70
108 52 0.27
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (107 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATATA
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
Found at i:27106700 original size:134 final size:133
Alignment explanation
Indices: 27106347--27106683 Score: 430
Period size: 134 Copynumber: 2.5 Consensus size: 133
27106337 GGTAGTTTAG
* * * * *
27106347 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAATGGTAAAACAGTAATTCTATAA
1 TAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAAT-GAGGGTAAAAC-GTAATTCTGTAA
*
27106412 ATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAA
64 ATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAA
27106477 AACGA
129 AACGA
* * * * *
27106482 TAATTATGTAAATCG-GGGTAAAATGGTAATTATGTAAATTGGGGGTAAAATGGTAATTCTGTAA
1 TAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAA-TGAGGGTAAAA-CGTAATTCTGTAA
* * *
27106546 ATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTA
64 ATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTATAAATCAAGGGTA
*
27106610 AAACGG
128 AAACGA
*
27106616 TAATT-T-TACAATCGAGGGTAAAATAGTAATTCTATAACCTGAGGGTAAAACGTTAATTCTGTA
1 TAATTATGTA-AATCGAGGGTAAAATAGTAATTCTATAA-ATGAGGGTAAAACG-TAATTCTGTA
27106679 AATCG
63 AATCG
27106684 GGAGTACTTT
Statistics
Matches: 174, Mismatches: 21, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
132 2 0.01
133 8 0.05
134 149 0.86
135 15 0.09
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.29
Consensus pattern (133 bp):
TAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAATGAGGGTAAAACGTAATTCTGTAAAT
CGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAA
CGA
Found at i:27115695 original size:55 final size:55
Alignment explanation
Indices: 27115597--27115703 Score: 142
Period size: 55 Copynumber: 1.9 Consensus size: 55
27115587 ATGTAGGCCC
* ** *
27115597 ACGCCCGTGTTAATTTAACAGGTTCGACCACGGGTACTTAGCACTGGCGTGTTGT
1 ACGCCCATGTTAATTTAACAGGTTCGACCACGGGTACCAAGCACGGGCGTGTTGT
* * * *
27115652 ACGCCCATGTTAATTTGATAGGTTCGACCACGGTTTCCAAGCACGGGCGTGT
1 ACGCCCATGTTAATTTAACAGGTTCGACCACGGGTACCAAGCACGGGCGTGT
27115704 CGCACACCCG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (55 bp):
ACGCCCATGTTAATTTAACAGGTTCGACCACGGGTACCAAGCACGGGCGTGTTGT
Found at i:27118362 original size:39 final size:39
Alignment explanation
Indices: 27118211--27118404 Score: 244
Period size: 40 Copynumber: 4.9 Consensus size: 39
27118201 CGTTCAAACA
* * * * * *
27118211 CCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
*
27118251 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
* * * *
27118291 CCTTCGGAGTTTATCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGG-GCTTAGCCCGGATATCACAACTCGCACAATTG
27118331 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
* *
27118370 CCTTCGGGCTTAGCCCTGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
27118405 TTCATACACA
Statistics
Matches: 136, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 61 0.45
40 74 0.54
41 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
Found at i:27131797 original size:40 final size:40
Alignment explanation
Indices: 27131753--27131887 Score: 175
Period size: 40 Copynumber: 3.4 Consensus size: 40
27131743 TAATAGCTCG
**
27131753 CACAAATGCCTTCGGGA-CTTAACCCGGATTTGGGAACTCA
1 CACAAATGCCTTC-GGATCTTAGTCCGGATTTGGGAACTCA
*
27131793 CACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAACTCG
1 CACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAACTCA
* ** *
27131833 CACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTA
1 CACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAACTCA
27131873 GCACAAA-GCCTTCGG
1 -CACAAATGCCTTCGG
27131888 GACTTAGCCC
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.04
40 76 0.89
41 6 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAACTCA
Found at i:27141432 original size:40 final size:39
Alignment explanation
Indices: 27141375--27141559 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
27141365 ATTAAATGAT
* * *
27141375 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
27141415 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
27141455 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
27141495 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
27141535 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
27141560 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:27141511 original size:80 final size:80
Alignment explanation
Indices: 27141374--27141580 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
27141364 AATTAAATGA
* * ** * *
27141374 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
27141439 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
27141452 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
27141517 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
27141534 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
27141581 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:27141565 original size:40 final size:39
Alignment explanation
Indices: 27141373--27141580 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
27141363 CAATTAAATG
* * ** *
27141373 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
27141413 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
27141453 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
27141493 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
27141533 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
27141573 ATATCCGG
1 ATATCCGG
27141581 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:27149418 original size:40 final size:39
Alignment explanation
Indices: 27149361--27149545 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
27149351 ATTAAATGAT
* * *
27149361 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
27149401 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
27149441 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
27149481 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
27149521 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
27149546 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:27149497 original size:80 final size:80
Alignment explanation
Indices: 27149360--27149566 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
27149350 AATTAAATGA
* * ** * *
27149360 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
27149425 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
27149438 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
27149503 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
27149520 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
27149567 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:27149551 original size:40 final size:39
Alignment explanation
Indices: 27149359--27149566 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
27149349 CAATTAAATG
* * ** *
27149359 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
27149399 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
27149439 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
27149479 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
27149519 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
27149559 ATATCCGG
1 ATATCCGG
27149567 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:27150999 original size:40 final size:40
Alignment explanation
Indices: 27150944--27151062 Score: 152
Period size: 40 Copynumber: 3.0 Consensus size: 40
27150934 GGGTGTTACA
*
27150944 TTGGGAACTCGCACAATTGCCTTCGGATCTTAGTCCGGAT
1 TTGGGAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
27150984 TTGGGAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 TTGGGAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
* ** * *
27151024 ATGGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 TTGGGAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
27151063 CATCATTCGA
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
40 60 0.85
41 11 0.15
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
TTGGGAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
Found at i:27153425 original size:40 final size:41
Alignment explanation
Indices: 27153357--27153578 Score: 321
Period size: 40 Copynumber: 5.6 Consensus size: 41
27153347 AACCCAAGTA
* * *
27153357 CCTTCGGGATTTAG-CTGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* *
27153396 CCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
27153436 CCTTCGGGTCTTAGCCCGGATATAGTCAA-TAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
27153476 CCTTCGGGACTTGGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
27153516 CCTTCGAGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
27153556 CCTTCGGGACTTAGACCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
27153579 CATTCGAATA
Statistics
Matches: 170, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 13 0.08
40 154 0.91
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
Found at i:27165969 original size:29 final size:28
Alignment explanation
Indices: 27165934--27166036 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 28
27165924 GTGACGAGAT
* *
27165934 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
*
27165963 GGGCACTAAGTGTGCGAGCTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
*
27165992 TGGCACTAAGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
27166021 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
27166037 TGATCGATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
28 4 0.06
29 63 0.94
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:27170701 original size:29 final size:29
Alignment explanation
Indices: 27170659--27170716 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
27170649 CTAAACCATA
27170659 ACTCTGATACTACTAAATGTAACATCCTT
1 ACTCTGATACTACTAAATGTAACATCCTT
27170688 ACTCTGATACTACTAAATGTAACATCCTT
1 ACTCTGATACTACTAAATGTAACATCCTT
27170717 TACCTATATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.34
Consensus pattern (29 bp):
ACTCTGATACTACTAAATGTAACATCCTT
Found at i:27175531 original size:16 final size:17
Alignment explanation
Indices: 27175500--27175532 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
27175490 CCACAATGCA
27175500 GGCCCATGTAGGCCCAC
1 GGCCCATGTAGGCCCAC
*
27175517 GGCCCGTGT-GGCCCAC
1 GGCCCATGTAGGCCCAC
27175533 TAAGCCTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.12, C:0.42, G:0.33, T:0.12
Consensus pattern (17 bp):
GGCCCATGTAGGCCCAC
Found at i:27180089 original size:40 final size:40
Alignment explanation
Indices: 27180045--27180232 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
27180035 GCTACTTGCT
27180045 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
27180085 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
27180125 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
27180165 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
27180204 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
27180233 CATCCAAATA
Statistics
Matches: 136, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 101 0.74
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:27180223 original size:119 final size:119
Alignment explanation
Indices: 27180012--27180232 Score: 331
Period size: 119 Copynumber: 1.9 Consensus size: 119
27180002 AAACCAAGTA
* * * *
27180012 CCTTCGGAATTTAGCCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
27180077 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
*
27180131 CCTTCGGGACTTAGCCCGGATATAG-TAGCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATT
1 CCTTCGGAACTTAG-CCGGATATAGCTA-CTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
*
27180193 AGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
27180233 CATCCAAATA
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
118 1 0.01
119 63 0.68
120 28 0.30
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (119 bp):
CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
Found at i:27187701 original size:40 final size:40
Alignment explanation
Indices: 27187624--27187799 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
27187614 AAACCAAGTA
* * * *
27187624 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
27187663 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
27187703 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
27187743 CCTTCGGG-CTTAGCCCGAAT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
27187781 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
27187800 TTATCATCCA
Statistics
Matches: 122, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 23 0.19
39 33 0.27
40 66 0.54
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:27187795 original size:78 final size:80
Alignment explanation
Indices: 27187624--27187799 Score: 243
Period size: 78 Copynumber: 2.2 Consensus size: 80
27187614 AAACCAAGTA
* * * * **
27187624 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAG
*
27187688 TAACTCGCACAAATG
66 TAACTAGCACAAATG
27187703 CCTTCGGGACTTAGCCCGGATATAG-TAGCTCGCACAAATGCCTTCGGG-CTTAGCCCGAAT-TA
1 CCTTCGGGACTTAGCCCGGATATAGCTA-CTCGCACAAATGCCTTCGGGACTTAGCCCGAATATA
*
27187765 GTCACTAGCACAAATG
65 GTAACTAGCACAAATG
27187781 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
27187800 TTATCATCCA
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
78 35 0.40
79 24 0.28
80 28 0.32
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAG
TAACTAGCACAAATG
Found at i:27198722 original size:37 final size:37
Alignment explanation
Indices: 27198664--27198763 Score: 164
Period size: 37 Copynumber: 2.7 Consensus size: 37
27198654 CGAATAGTCC
* *
27198664 CCACACGTAGTTATCGAGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
27198701 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
27198738 CCACATGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
27198764 AGAATATATT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:27200028 original size:6 final size:6
Alignment explanation
Indices: 27200017--27200055 Score: 60
Period size: 6 Copynumber: 6.2 Consensus size: 6
27200007 AATCCTCCTA
27200017 TATTTT TATTTT TATTTTT TATTTTT TATTTT TATTTT T
1 TATTTT TATTTT TA-TTTT TA-TTTT TATTTT TATTTT T
27200056 TTTCATTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 19 0.59
7 13 0.41
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TATTTT
Found at i:27200035 original size:7 final size:7
Alignment explanation
Indices: 27200019--27200056 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
27200009 TCCTCCTATA
27200019 TTTTTA-
1 TTTTTAT
27200025 TTTTTAT
1 TTTTTAT
27200032 TTTTTAT
1 TTTTTAT
27200039 TTTTTA-
1 TTTTTAT
27200045 TTTTTAT
1 TTTTTAT
27200052 TTTTT
1 TTTTT
27200057 TTCATTTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 12 0.40
7 18 0.60
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTAT
Found at i:27200037 original size:13 final size:13
Alignment explanation
Indices: 27200017--27200056 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
27200007 AATCCTCCTA
27200017 TATTTTTA-TTTT
1 TATTTTTATTTTT
27200029 TATTTTTTATTTTT
1 TA-TTTTTATTTTT
27200043 TATTTTTATTTTT
1 TATTTTTATTTTT
27200056 T
1 T
27200057 TTCATTTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 2 0.08
13 18 0.69
14 6 0.23
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TATTTTTATTTTT
Found at i:27203026 original size:13 final size:13
Alignment explanation
Indices: 27203004--27203036 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
27202994 TTGCTTTAGT
27203004 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
27203016 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
27203029 TTAGTTTA
1 TTAGTTTA
27203037 ATAAGCAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:27205306 original size:108 final size:110
Alignment explanation
Indices: 27205153--27205349 Score: 258
Period size: 108 Copynumber: 1.8 Consensus size: 110
27205143 ATCCTTTTGA
* * * *
27205153 AACTTATTATTGCCATGTCTCGACATGGTCTTACATAGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTATCAATGCCATGTCTCGACATGGTCTTACAGAGTACCCTTGCCTTA-GAAACCTCACCAA
27205216 -TGCCATGCCTTGGCATAGTCTTACCTGGGACCTTTTCTTTATAGT
65 TTGCCATGCCTTGGCATAGTCTTACCTGGGACCTTTTCTTTATAGT
* * * **
27205261 AACTTATCAATGCCATGTCTTGACATGGTGTTACAG-GATACCCTTGCCTTAGAAACCTTATGAA
1 AACTTATCAATGCCATGTCTCGACATGGTCTTACAGAG-TACCCTTGCCTTAGAAACCTCACCAA
*
27205325 TTGCCATGCCTTGGCATGGTCTTAC
65 TTGCCATGCCTTGGCATAGTCTTAC
27205350 ATGGTATCCT
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
107 2 0.03
108 45 0.60
109 5 0.07
110 23 0.31
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTATCAATGCCATGTCTCGACATGGTCTTACAGAGTACCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATAGTCTTACCTGGGACCTTTTCTTTATAGT
Found at i:27215328 original size:41 final size:41
Alignment explanation
Indices: 27215279--27215359 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
27215269 ATTCAATATG
27215279 TACTTAAATCGAGCATACAAAGTTTCAATCATGCATTCGGT
1 TACTTAAATCGAGCATACAAAGTTTCAATCATGCATTCGGT
27215320 TACTTAAATCGAGCATACAAAGTTTCAATCATGCATTCGG
1 TACTTAAATCGAGCATACAAAGTTTCAATCATGCATTCGG
27215360 AACTAAATCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.31
Consensus pattern (41 bp):
TACTTAAATCGAGCATACAAAGTTTCAATCATGCATTCGGT
Found at i:27217810 original size:78 final size:80
Alignment explanation
Indices: 27217674--27217855 Score: 237
Period size: 78 Copynumber: 2.3 Consensus size: 80
27217664 TCGAATGATG
* *
27217674 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATTCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
27217739 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
27217753 TTCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
27217815 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* * *
27217832 ACCGGGCTATGTCCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
27217856 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
77 1 0.01
78 51 0.57
79 27 0.30
80 11 0.12
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Done.