Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 94 of 425
Found at i:27217837 original size:40 final size:40
Alignment explanation
Indices: 27217674--27217857 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
27217664 TCGAATGATG
* *
27217674 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
27217714 TCCGGACTAAGAT-TCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
27217754 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
27217792 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
27217833 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
27217858 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 26 0.21
39 18 0.14
40 72 0.57
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:27224492 original size:29 final size:29
Alignment explanation
Indices: 27224453--27224540 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
27224443 CAAAGATAAC
*
27224453 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
27224482 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
27224511 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
27224541 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:27224511 original size:15 final size:15
Alignment explanation
Indices: 27224453--27224531 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
27224443 CAAAGATAAC
*
27224453 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
27224467 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
27224482 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
27224496 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
27224511 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
27224526 AAGAAA
1 AAGAAA
27224532 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:27224540 original size:15 final size:15
Alignment explanation
Indices: 27224464--27224540 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
27224454 AGAAAACCGA
27224464 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
27224479 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
27224493 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
27224507 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
27224523 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
27224538 ATA
1 ATA
27224541 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:27227546 original size:46 final size:46
Alignment explanation
Indices: 27227479--27227697 Score: 281
Period size: 46 Copynumber: 4.8 Consensus size: 46
27227469 TGTAACCCGC
* *
27227479 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
27227525 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* * *
27227575 -C-TCA-CGAACTCGGACTCAACTCAACGAGTT---ACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
27227615 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
27227661 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
27227698 TGCCCAAATA
Statistics
Matches: 150, Mismatches: 11, Indels: 24
0.81 0.06 0.13
Matches are distributed among these distances:
39 2 0.01
40 3 0.02
41 2 0.01
42 2 0.01
43 25 0.17
44 1 0.01
46 80 0.53
47 25 0.17
48 2 0.01
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:27233382 original size:69 final size:67
Alignment explanation
Indices: 27233285--27233452 Score: 221
Period size: 69 Copynumber: 2.5 Consensus size: 67
27233275 CTGATGAATA
* *
27233285 GTAAGCTTTATTGAGCTGAAATAGTAAGCTCTATTA-AGCTGAACAGTAAGCTCATACGAGCTGA
1 GTAAGCTCTAATGAGCTGAAATAGTAAGCT-T-TTACAGCTGAACAGTAAGCTCATACGAGCTGA
*
27233349 AATG
64 AACG
* *
27233353 GTAGGCTCTAATGAGCTGATAATAGTAAGCTTTTACGAGCTGAACAGTAAGCTCATATGAGCTGA
1 GTAAGCTCTAATGAGCTGA-AATAGTAAGCTTTTAC-AGCTGAACAGTAAGCTCATACGAGCTGA
27233418 AACG
64 AACG
* * *
27233422 GTAAGCTCTAATTAGCTGAAACATTAAGCTT
1 GTAAGCTCTAATGAGCTGAAATAGTAAGCTT
27233453 CAATGAGCTA
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
67 3 0.03
68 27 0.31
69 58 0.66
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (67 bp):
GTAAGCTCTAATGAGCTGAAATAGTAAGCTTTTACAGCTGAACAGTAAGCTCATACGAGCTGAAA
CG
Found at i:27233439 original size:92 final size:91
Alignment explanation
Indices: 27233271--27233510 Score: 238
Period size: 92 Copynumber: 2.6 Consensus size: 91
27233261 AAGCTCCTCC
* *
27233271 TGAGCTGATGAATAGTAAGC-TTTATTGAGCTGAAATAGTAAGCTC-TATTAAGCTGAACAGTAA
1 TGAGCTGAT-AATAGTAAGCTTTTA-CGAGCTG-AATAGTAAGCTCATA-TGAGCTGAACAGTAA
** *
27233334 GCTCATACGAGCTGAAATGGTAGGC-TCTAA
62 GCTCATACGAGCTGAAACAGTAAGCTTC-AA
* *
27233364 TGAGCTGATAATAGTAAGCTTTTACGAGCTGAACAGTAAGCTCATATGAGCTGAAACGGTAAGCT
1 TGAGCTGATAATAGTAAGCTTTTACGAGCTGAATAGTAAGCTCATATGAGCTG-AACAGTAAGCT
** *
27233429 C-TAATTAGCTGAAACATTAAGCTTCAA
65 CAT-ACGAGCTGAAACAGTAAGCTTCAA
* * *
27233456 TGAGCT-AAAATAGTAAGCTCTTACGAGCTGATATATGGTAAGCTCATACGAGCTG
1 TGAGCTGATAATAGTAAGCTTTTACGAGCTGA-ATA--GTAAGCTCATATGAGCTG
27233511 TGGTGAGTCC
Statistics
Matches: 125, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
91 41 0.33
92 52 0.42
93 15 0.12
94 17 0.14
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (91 bp):
TGAGCTGATAATAGTAAGCTTTTACGAGCTGAATAGTAAGCTCATATGAGCTGAACAGTAAGCTC
ATACGAGCTGAAACAGTAAGCTTCAA
Found at i:27233471 original size:69 final size:69
Alignment explanation
Indices: 27233321--27233500 Score: 209
Period size: 69 Copynumber: 2.6 Consensus size: 69
27233311 AGCTCTATTA
* * * *
27233321 AGCTGAACAGTAAGCTCATACGAGCTGAAATGGTAGGCTCTAATGAGCTGATAATAGTAAGCTTT
1 AGCTAAACAGTAAGCTCATACGAGCTGAAATGGTAAGCTCTAATGAGCTGATAACAGTAAGCTTC
*
27233386 TACG
66 AACG
* * * * *
27233390 AGCTGAACAGTAAGCTCATATGAGCTGAAACGGTAAGCTCTAATTAGCTGA-AACATTAAGCTTC
1 AGCTAAACAGTAAGCTCATACGAGCTGAAATGGTAAGCTCTAATGAGCTGATAACAGTAAGCTTC
*
27233454 AATG
66 AACG
* *
27233458 AGCTAAAATAGTAAGCTCTTACGAGCTGATATATGGTAAGCTC
1 AGCT-AAACAGTAAGCTCATACGAGCTGA-A-ATGGTAAGCTC
27233501 ATACGAGCTG
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
68 16 0.17
69 67 0.71
70 1 0.01
71 10 0.11
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (69 bp):
AGCTAAACAGTAAGCTCATACGAGCTGAAATGGTAAGCTCTAATGAGCTGATAACAGTAAGCTTC
AACG
Found at i:27233483 original size:23 final size:23
Alignment explanation
Indices: 27233271--27233510 Score: 166
Period size: 23 Copynumber: 10.3 Consensus size: 23
27233261 AAGCTCCTCC
27233271 TGAGCTGATGAATAGTAAGCT-TTA
1 TGAGCTGA--AATAGTAAGCTCTTA
27233295 TTGAGCTGAAATAGTAAGCTC-TA
1 -TGAGCTGAAATAGTAAGCTCTTA
* * *
27233318 TTAAGCTG-AACAGTAAGCTCATA
1 -TGAGCTGAAATAGTAAGCTCTTA
* * * *
27233341 CGAGCTGAAATGGTAGGCTCTAA
1 TGAGCTGAAATAGTAAGCTCTTA
*
27233364 TGAGCTGATAATAGTAAGCTTTTA
1 TGAGCTGA-AATAGTAAGCTCTTA
* * *
27233388 CGAGCTG-AACAGTAAGCTCATA
1 TGAGCTGAAATAGTAAGCTCTTA
** *
27233410 TGAGCTGAAACGGTAAGCTCTAA
1 TGAGCTGAAATAGTAAGCTCTTA
* * * *
27233433 TTAGCTGAAACATTAAGCT-TCAA
1 TGAGCTGAAATAGTAAGCTCT-TA
*
27233456 TGAGCTAAAATAGTAAGCTCTTA
1 TGAGCTGAAATAGTAAGCTCTTA
* * *
27233479 CGAGCTGATATATGGTAAGCTCATA
1 TGAGCTGA-A-ATAGTAAGCTCTTA
*
27233504 CGAGCTG
1 TGAGCTG
27233511 TGGTGAGTCC
Statistics
Matches: 172, Mismatches: 34, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
22 35 0.20
23 91 0.53
24 19 0.11
25 27 0.16
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (23 bp):
TGAGCTGAAATAGTAAGCTCTTA
Found at i:27238559 original size:31 final size:31
Alignment explanation
Indices: 27238524--27238586 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
27238514 TCATCTTTGA
*
27238524 TTCAAAATATCACATAATTCAACATCCTCAC
1 TTCAAAATATCACAGAATTCAACATCCTCAC
27238555 TTCAAAATATCACAGAATTCAACATCCTCAC
1 TTCAAAATATCACAGAATTCAACATCCTCAC
27238586 T
1 T
27238587 AACTCTCCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.41, C:0.29, G:0.02, T:0.29
Consensus pattern (31 bp):
TTCAAAATATCACAGAATTCAACATCCTCAC
Found at i:27247135 original size:40 final size:39
Alignment explanation
Indices: 27247024--27247137 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
27247014 GAATGTTCGA
27247024 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* * *
27247063 ATGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* *
27247102 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
27247138 GGTTACCATA
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 50 0.75
40 17 0.25
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
Found at i:27247153 original size:40 final size:39
Alignment explanation
Indices: 27247025--27247167 Score: 169
Period size: 39 Copynumber: 3.6 Consensus size: 39
27247015 AATGTTCGAG
* *
27247025 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
27247064 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * * *
27247103 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
27247143 CCATAACCGGGCTATGTCCCGAAGG
1 TGATAACCGGGCTAAG-CCCGAAGG
27247168 TGTTTTGAAC
Statistics
Matches: 90, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 50 0.56
40 40 0.44
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:27254203 original size:55 final size:56
Alignment explanation
Indices: 27254138--27254252 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 56
27254128 AGCATGGCTG
* * *
27254138 CCAGATACAGA-AAATGTGAC-AGAGTCACCAGATACAGATATTTTGTGGCA-ATGCCA
1 CCAGATACAGATAAACGTGACAAG-GCCACCAGA-ACAGATAATTTGTGGCACA-GCCA
* *
27254194 CCAGA-ACAGATATACGTGGCAAGGCCACCAGAACAGATAATTTGTGGCACAGCCA
1 CCAGATACAGATAAACGTGACAAGGCCACCAGAACAGATAATTTGTGGCACAGCCA
27254249 CCAG
1 CCAG
27254253 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
55 29 0.57
56 20 0.39
57 2 0.04
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAAGGCCACCAGAACAGATAATTTGTGGCACAGCCA
Found at i:27254249 original size:28 final size:28
Alignment explanation
Indices: 27254163--27254252 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
27254153 GTGACAGAGT
* *
27254163 CACCAGATACAGATATTTTGTGGCAATGC
1 CACCAGA-ACAGATAATTTGTGGCAAGGC
**
27254192 CACCAGAACAGAT-ATACGTGGCAAGGC
1 CACCAGAACAGATAATTTGTGGCAAGGC
27254219 CACCAGAACAGATAATTTGTGGCACA-GC
1 CACCAGAACAGATAATTTGTGGCA-AGGC
27254247 CACCAG
1 CACCAG
27254253 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 22 0.42
29 8 0.15
ACGTcount: A:0.34, C:0.26, G:0.22, T:0.18
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAAGGC
Found at i:27254405 original size:28 final size:28
Alignment explanation
Indices: 27254358--27254422 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
27254348 AAATTAACCC
27254358 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTCATTTTGCATACA
* *
27254386 TAGGGGTATAATGGTTATTTTGCATACA
1 TAGGGGTATAAAGGTCATTTTGCATACA
27254414 TAGGGGTAT
1 TAGGGGTAT
27254423 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.28, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAAAGGTCATTTTGCATACA
Found at i:27254839 original size:15 final size:15
Alignment explanation
Indices: 27254819--27254849 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
27254809 CAAATATCGA
27254819 AATAAAATATAGTAT
1 AATAAAATATAGTAT
27254834 AATAAAATATAGTAT
1 AATAAAATATAGTAT
27254849 A
1 A
27254850 TAGTCCCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (15 bp):
AATAAAATATAGTAT
Found at i:27256290 original size:24 final size:24
Alignment explanation
Indices: 27256262--27256309 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
27256252 TAATATCAAA
27256262 TTTAACTTATTTAATTATCACTCT
1 TTTAACTTATTTAATTATCACTCT
27256286 TTTAACTTATTTAATTATCACTCT
1 TTTAACTTATTTAATTATCACTCT
27256310 ATTCAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (24 bp):
TTTAACTTATTTAATTATCACTCT
Found at i:27258861 original size:8 final size:9
Alignment explanation
Indices: 27258837--27258861 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
27258827 TTAGGGATTA
27258837 TATAAAAAT
1 TATAAAAAT
27258846 TATAAAAAT
1 TATAAAAAT
27258855 TATAAAA
1 TATAAAA
27258862 GCACAACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
TATAAAAAT
Found at i:27259420 original size:10 final size:10
Alignment explanation
Indices: 27259355--27259464 Score: 70
Period size: 10 Copynumber: 11.3 Consensus size: 10
27259345 TTTTATTATT
27259355 TAAT-TTTTGA
1 TAATATTTT-A
*
27259365 TAATATTTATT
1 TAATATTT-TA
27259376 TAATATTTT-
1 TAATATTTTA
*
27259385 CAA-ATTTTA
1 TAATATTTTA
* *
27259394 TAACATATTA
1 TAATATTTTA
27259404 GTAATATTTTA
1 -TAATATTTTA
*
27259415 TAATATTTAA
1 TAATATTTTA
*
27259425 TAGT-TTTTA
1 TAATATTTTA
27259434 TAAT-TTTTA
1 TAATATTTTA
*
27259443 -AAAATTTTA
1 TAATATTTTA
* *
27259452 TGATATTTAA
1 TAATATTTTA
27259462 TAA
1 TAA
27259465 CTTTTTATTG
Statistics
Matches: 78, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
8 7 0.09
9 21 0.27
10 30 0.38
11 19 0.24
12 1 0.01
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (10 bp):
TAATATTTTA
Found at i:27259469 original size:19 final size:19
Alignment explanation
Indices: 27259386--27259469 Score: 80
Period size: 19 Copynumber: 4.4 Consensus size: 19
27259376 TAATATTTTC
* *
27259386 AAATTTTATAACATATTAGT
1 AAATTTTATAATAT-TTAAT
27259406 AATATTTTATAATATTTAAT
1 AA-ATTTTATAATATTTAAT
** *
27259426 AGTTTTTATAATTTTTAA-
1 AAATTTTATAATATTTAAT
*
27259444 AAATTTTATGATATTTAAT
1 AAATTTTATAATATTTAAT
*
27259463 AACTTTT
1 AAATTTT
27259470 TATTGTTTTT
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
18 14 0.27
19 20 0.38
20 7 0.13
21 11 0.21
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (19 bp):
AAATTTTATAATATTTAAT
Found at i:27266797 original size:43 final size:43
Alignment explanation
Indices: 27266715--27266858 Score: 130
Period size: 43 Copynumber: 3.4 Consensus size: 43
27266705 TGAGATATTG
** * * *** *
27266715 TGTAAGACTGTGTCTGGGACACAGGCCTCGATTGAGATTTACG
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATACTGATTTACA
* **
27266758 TATAAGACCATGTCTGGGACATCGGCATC-ATATCTGATTT-CA
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATA-CTGATTTACA
* * *
27266800 TGTAAGACCCTGTCTAGGACAGAGGCATCGATACTGAATTACA
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATACTGATTTACA
*
27266843 TGTAAGACCACGTCTG
1 TGTAAGACCATGTCTG
27266859 AGATGTTGGC
Statistics
Matches: 79, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
42 33 0.42
43 46 0.58
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGAGGCATCGATACTGATTTACA
Found at i:27266820 original size:42 final size:43
Alignment explanation
Indices: 27266760--27266857 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 43
27266750 GATTTACGTA
* ** *
27266760 TAAGACCATGTCTGGGACATCGGCATC-ATATCTG-ATTTCATG
1 TAAGACCATGTCTAGGACAGAGGCATCGATA-CTGAATTACATG
*
27266802 TAAGACCCTGTCTAGGACAGAGGCATCGATACTGAATTACATG
1 TAAGACCATGTCTAGGACAGAGGCATCGATACTGAATTACATG
*
27266845 TAAGACCACGTCT
1 TAAGACCATGTCT
27266858 GAGATGTTGG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
42 26 0.55
43 21 0.45
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (43 bp):
TAAGACCATGTCTAGGACAGAGGCATCGATACTGAATTACATG
Found at i:27268768 original size:49 final size:49
Alignment explanation
Indices: 27268712--27268943 Score: 239
Period size: 49 Copynumber: 4.7 Consensus size: 49
27268702 CTGGCACGCA
*
27268712 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
** *** * *
27268761 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCGTCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * ** *
27268811 TAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGTTATCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
* * * *
27268862 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTTTTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* * *
27268911 TAATAGCCTGCACTTAGTATTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
27268944 TCACAATAGA
Statistics
Matches: 145, Mismatches: 35, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
49 66 0.46
50 45 0.31
51 34 0.23
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:27268830 original size:50 final size:49
Alignment explanation
Indices: 27268712--27268834 Score: 165
Period size: 50 Copynumber: 2.5 Consensus size: 49
27268702 CTGGCACGCA
** ** *
27268712 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAACCATCCGATACACG
* * *
27268761 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCGTCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGACC-AACCATCCGATACACG
27268811 TAGTAGCCTGCACTTAGTACTACA
1 TAGTAGCCTGCACTTAGTACTACA
27268835 TACGTGATCG
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 30 0.46
50 35 0.54
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAACCATCCGATACACG
Found at i:27269223 original size:27 final size:27
Alignment explanation
Indices: 27269193--27269246 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
27269183 TCATACAACC
* *
27269193 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
27269220 CATGTAACAATAATTTTCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
27269247 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:27270136 original size:31 final size:31
Alignment explanation
Indices: 27270101--27270160 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
27270091 AGAAATTTAT
*
27270101 GGAATACCGGTATGATTTACAGATCTTGTTA
1 GGAATACCGATATGATTTACAGATCTTGTTA
*
27270132 GGAATACTGATATGATTTACAGATCTTGT
1 GGAATACCGATATGATTTACAGATCTTGT
27270161 CAGACATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.37
Consensus pattern (31 bp):
GGAATACCGATATGATTTACAGATCTTGTTA
Found at i:27271167 original size:30 final size:30
Alignment explanation
Indices: 27271132--27271188 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
27271122 GAAAACCGAG
* *
27271132 TAAAGAAATCCAAGATAGAGAAACCCAGAA
1 TAAAGAAATCCAAAATAAAGAAACCCAGAA
27271162 TAAAGAAATCCAAAATAAAGAAACCCA
1 TAAAGAAATCCAAAATAAAGAAACCCA
27271189 AGATACAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.60, C:0.18, G:0.12, T:0.11
Consensus pattern (30 bp):
TAAAGAAATCCAAAATAAAGAAACCCAGAA
Found at i:27271168 original size:15 final size:14
Alignment explanation
Indices: 27271132--27271189 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 14
27271122 GAAAACCGAG
*
27271132 TAAAGAAATCCAAGA
1 TAAAGAAACCCAA-A
*
27271147 TAGAGAAACCCAGAA
1 TAAAGAAACCCA-AA
*
27271162 TAAAGAAATCCAAAA
1 TAAAGAAA-CCCAAA
27271177 TAAAGAAACCCAA
1 TAAAGAAACCCAA
27271190 GATACAATAC
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
14 4 0.11
15 28 0.78
16 4 0.11
ACGTcount: A:0.60, C:0.17, G:0.12, T:0.10
Consensus pattern (14 bp):
TAAAGAAACCCAAA
Found at i:27274373 original size:49 final size:49
Alignment explanation
Indices: 27274304--27274548 Score: 294
Period size: 49 Copynumber: 4.9 Consensus size: 49
27274294 TAGCCAAGGC
** * *
27274304 TATCTGGTATGCATAGTAGCCTGCACTTTGTACTACACATGTGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
27274353 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
** * *
27274403 CGTCTGATACA-AGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACA-TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * *
27274454 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCATT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
27274503 TATTTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
27274549 TCACAATAGA
Statistics
Matches: 163, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 82 0.50
50 43 0.26
51 37 0.23
52 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:27274490 original size:101 final size:98
Alignment explanation
Indices: 27274315--27274548 Score: 299
Period size: 101 Copynumber: 2.4 Consensus size: 98
27274305 ATCTGGTATG
* * * *
27274315 CATAGTAGCCTGCACTTTGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACT
*
27274380 TAGTACTACACACATGACCTAACCGTCTGATACA
66 TAGTACTACACACATGACC-AACCATCTGATACA
* *
27274414 -AGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGC
1 CA-TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGC
** *** * *
27274478 ACTTAGTACTACACATGTGACCATTTATTTGGTACA
63 ACTTAGTACTACACACATGACCAACCATCTGATACA
27274514 CATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC
27274549 TCACAATAGA
Statistics
Matches: 116, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
98 1 0.01
99 30 0.26
100 42 0.36
101 43 0.37
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (98 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACT
TAGTACTACACACATGACCAACCATCTGATACA
Found at i:27274535 original size:23 final size:23
Alignment explanation
Indices: 27274460--27274535 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
27274450 AAGTTATCAG
*
27274460 GTACGCATAGTAGCCTGCACTTA
1 GTACACATAGTAGCCTGCACTTA
* ** * *
27274483 GTACTACACATGT-GACCATTTATTTG
1 GTAC-ACATA-GTAG-CC-TGCACTTA
27274509 GTACACATAGTAGCCTGCACTTA
1 GTACACATAGTAGCCTGCACTTA
27274532 GTAC
1 GTAC
27274536 TACACACGTG
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
23 12 0.32
24 8 0.22
25 9 0.24
26 8 0.22
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (23 bp):
GTACACATAGTAGCCTGCACTTA
Found at i:27281097 original size:29 final size:27
Alignment explanation
Indices: 27281059--27281161 Score: 125
Period size: 29 Copynumber: 3.6 Consensus size: 27
27281049 GTGACAAGAT
*
27281059 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTT-AAAT-TA
27281088 TGGCACTAAGTGTGCGAGCTTAAATTACA
1 TGGCACTAAGTGTGCGAGCTTAAATT--A
* *
27281117 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT--TA
27281146 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
27281162 TGATCGATTA
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
27 1 0.02
28 4 0.06
29 61 0.92
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (27 bp):
TGGCACTAAGTGTGCGAGCTTAAATTA
Found at i:27289213 original size:29 final size:28
Alignment explanation
Indices: 27289175--27289277 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 28
27289165 GTGACGAGAT
* *
27289175 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
27289204 TGGCACTAAGTGTGCGAGCTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
27289233 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
27289262 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
27289278 TGATCGATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
28 4 0.06
29 63 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:27293612 original size:30 final size:30
Alignment explanation
Indices: 27293567--27293626 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
27293557 ATTTAATACG
27293567 AACTTTAGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTAGCAAAATTACACTTTTT-CCCCTA
* *
27293597 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTAGCAAAATTACACTTTTTCCCCTA
27293627 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTAGCAAAATTACACTTTTTCCCCTA
Found at i:27295926 original size:42 final size:43
Alignment explanation
Indices: 27295848--27295945 Score: 101
Period size: 42 Copynumber: 2.3 Consensus size: 43
27295838 CTCGATTGAG
* **
27295848 ATTTACATATAAGACCATGTCTGGGACATCGACATCG-TATCT-A
1 ATTT-CATGTAAGACCATGTCTGGGACAGAGACATCGATA-CTGA
* * *
27295891 ATTTCATGTAAGACCCTGTCTGGGATAGAGGCATCGATACTGA
1 ATTTCATGTAAGACCATGTCTGGGACAGAGACATCGATACTGA
*
27295934 ATTACATGTAAG
1 ATTTCATGTAAG
27295946 GCCACGTCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 28 0.61
43 18 0.39
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (43 bp):
ATTTCATGTAAGACCATGTCTGGGACAGAGACATCGATACTGA
Found at i:27310646 original size:47 final size:47
Alignment explanation
Indices: 27310588--27310717 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 47
27310578 GTACGTATAA
* * * * *
27310588 TACCTTAATTTGGCTACAGGTCATGGTATAGGTA-TTTAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCT-GAGAGAAGT
* * *
27310635 TACCTTGATTTGGATACGGGCCATGGTATAGGTACTCTGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGT
* *
27310682 TACCTTGATTTGGCTATGGGGCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
27310718 TATCGATTGT
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
47 69 0.97
48 2 0.03
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGT
Found at i:27312722 original size:49 final size:50
Alignment explanation
Indices: 27312646--27312891 Score: 248
Period size: 49 Copynumber: 4.9 Consensus size: 50
27312636 TCTATTGTGT
* * * * *
27312646 GGTCACGTGTGTAGTACTTAGTACAGGCTACTACATGTACCAGATTATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTA
* * * *
27312695 GGTCGCATGTGTAGTACTAAGAGCAGGCTACT-CTGTGTACCCGATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTAC-GTGTACCAGATAA-TTA
* * ** **
27312746 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTA
* * *
27312796 GGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTA
* **
27312845 GGT-AGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA
1 GGTCA-CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
27312892 CTTTGGCTAC
Statistics
Matches: 161, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
48 2 0.01
49 76 0.47
50 46 0.29
51 36 0.22
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTA
Found at i:27312836 original size:101 final size:98
Alignment explanation
Indices: 27312648--27312877 Score: 275
Period size: 100 Copynumber: 2.3 Consensus size: 98
27312638 TATTGTGTGG
* * * *
27312648 TCACGTGTGTAGTACTTAGTACAGGCTACTACATGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGATTGGTCACATGTGTAGTACT
*
27312713 AAGAGCAGGCTACTCTGTGTACCCGATAACTTCGA
66 AAGAGCAAGCTACTCTGTGTACCCGATAA-TT-GA
* ** * *
27312748 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGATT-GGTCACATGTGTAGTAC
* * *
27312813 TAAGTGCAAGCTACTAC-GTGTACCGGATAATTGG
65 TAAGAGCAAGCTACT-CTGTGTACCCGATAATTGA
*
27312847 T-AGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCA-CGTGTGTAGTACTAAGTGCAGGCTACTA
27312878 TGCATACCAG
Statistics
Matches: 113, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
98 1 0.01
99 29 0.26
100 42 0.37
101 40 0.35
102 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGATTGGTCACATGTGTAGTACT
AAGAGCAAGCTACTCTGTGTACCCGATAATTGA
Found at i:27316042 original size:19 final size:19
Alignment explanation
Indices: 27316014--27316051 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
27316004 CAAGAAAGAG
27316014 GCCAAGGAGTAAGTCATTC
1 GCCAAGGAGTAAGTCATTC
*
27316033 GCCAATGAGTAAGTCATTC
1 GCCAAGGAGTAAGTCATTC
27316052 CAATCCCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (19 bp):
GCCAAGGAGTAAGTCATTC
Found at i:27326143 original size:29 final size:29
Alignment explanation
Indices: 27326110--27326269 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
27326100 GTGACGAGAT
27326110 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
27326139 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
27326168 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
27326197 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
27326226 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
27326255 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
27326270 GAAATCGAGT
Statistics
Matches: 109, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
28 2 0.02
29 106 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:27326180 original size:58 final size:58
Alignment explanation
Indices: 27326106--27326271 Score: 192
Period size: 58 Copynumber: 2.9 Consensus size: 58
27326096 TACGGTGACG
* *
27326106 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
* * **
27326163 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
* * * ** * *
27326221 GGGTATGGCACTATGTGTGCGGGCT-TAAATCACATGGCACTAAGTGTGCGA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAT-ATATGGCACTAAGTGTGCGA
27326272 AATCGAGTAT
Statistics
Matches: 90, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
57 7 0.08
58 83 0.92
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
Found at i:27330747 original size:20 final size:20
Alignment explanation
Indices: 27330722--27330763 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
27330712 GATTTCACAA
27330722 CTCGCACAATTGCCTCCGGG
1 CTCGCACAATTGCCTCCGGG
*
27330742 CTCGCACAATTGCCTTCGGG
1 CTCGCACAATTGCCTCCGGG
27330762 CT
1 CT
27330764 TAGCCCGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.38, G:0.24, T:0.24
Consensus pattern (20 bp):
CTCGCACAATTGCCTCCGGG
Found at i:27330790 original size:59 final size:60
Alignment explanation
Indices: 27330684--27330802 Score: 177
Period size: 59 Copynumber: 2.0 Consensus size: 60
27330674 TATGGTAACC
*
27330684 CGCACAAATGCCTTCGGGACTTAACCCGGATTTCACAACTCGCACAATTGCCTCCGGGCT
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTCCGGGCT
* * * * *
27330744 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACAATTGCCTTCGGGCT
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTCCGGGCT
27330803 TAGCCCGGAT
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
59 36 0.68
60 17 0.32
ACGTcount: A:0.21, C:0.34, G:0.22, T:0.24
Consensus pattern (60 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTCCGGGCT
Found at i:27330795 original size:39 final size:39
Alignment explanation
Indices: 27330741--27330816 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
27330731 TTGCCTCCGG
27330741 GCTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATA
1 GCTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATA
27330780 GCTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 GCTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
27330817 CTCGAACATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.25
Consensus pattern (39 bp):
GCTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATA
Found at i:27334493 original size:47 final size:47
Alignment explanation
Indices: 27334424--27334555 Score: 156
Period size: 47 Copynumber: 2.8 Consensus size: 47
27334414 GTGTGAATAA
* * * *
27334424 TACCTTGATTTGGCTGTGGGCCATGGTATAGGTATTTAGAGAGGAGT
1 TACCTTGATTTGGCTATAGGCCATGATATAGGTATTTAGAGAGAAGT
* * ** * *
27334471 TACCTTGATTTTGCTATAGGCCATGATATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTATAGGCCATGATATAGGTATTTAGAGAGAAGT
* *
27334518 TACCTTGATTTGGCTACAAGCCATGATATAGGTATTTA
1 TACCTTGATTTGGCTATAGGCCATGATATAGGTATTTA
27334556 TCGATTATGA
Statistics
Matches: 69, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTATAGGCCATGATATAGGTATTTAGAGAGAAGT
Found at i:27340305 original size:24 final size:25
Alignment explanation
Indices: 27340255--27340306 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
27340245 AGGAAGTGCG
* * *
27340255 AAAAGGGCTTTGCCCCAATTTACCA
1 AAAAGGGCTTTACCCCAAGTAACCA
*
27340280 AAAAGGGCTTTACCCC-AGTAATCA
1 AAAAGGGCTTTACCCCAAGTAACCA
27340304 AAA
1 AAA
27340307 GAGGCTAGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.21
Consensus pattern (25 bp):
AAAAGGGCTTTACCCCAAGTAACCA
Found at i:27343769 original size:40 final size:39
Alignment explanation
Indices: 27343724--27343931 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
27343714 CGGAATACAA
*
27343724 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
27343764 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
27343804 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
27343844 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
27343884 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
27343924 CCGGATAT
1 CCGGATAT
27343932 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:27343871 original size:80 final size:81
Alignment explanation
Indices: 27343724--27343929 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
27343714 CGGAATACAA
* * * *
27343724 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
27343788 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
27343804 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
27343867 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
27343884 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
27343930 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:27351751 original size:40 final size:39
Alignment explanation
Indices: 27351706--27351913 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
27351696 CGGAATACAA
*
27351706 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
27351746 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
27351786 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
27351826 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
27351866 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
27351906 CCGGATAT
1 CCGGATAT
27351914 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:27351853 original size:80 final size:81
Alignment explanation
Indices: 27351706--27351911 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
27351696 CGGAATACAA
* * * *
27351706 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
27351770 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
27351786 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
27351849 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
27351866 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
27351912 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:27354784 original size:15 final size:15
Alignment explanation
Indices: 27354764--27354802 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
27354754 AATGAGCACC
*
27354764 AGAGGTACTCGTGGA
1 AGAGGTACACGTGGA
27354779 AGAGGTACACGTGGA
1 AGAGGTACACGTGGA
27354794 AGAGGTACA
1 AGAGGTACA
27354803 AAAGGCTGCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.33, C:0.13, G:0.38, T:0.15
Consensus pattern (15 bp):
AGAGGTACACGTGGA
Found at i:27358280 original size:40 final size:40
Alignment explanation
Indices: 27358206--27358388 Score: 271
Period size: 40 Copynumber: 4.6 Consensus size: 40
27358196 AACCCAAGTA
* *
27358206 CCTTCGGGAT-TTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGCCACTAGCACAAATG
27358245 CCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAAATG
* * *
27358285 CCTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAAATG
* *
27358325 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGCCACTAGCAC-AAATG
27358366 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
27358389 CATCCGAATA
Statistics
Matches: 134, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 94 0.70
41 27 0.20
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAAATG
Found at i:27364835 original size:44 final size:44
Alignment explanation
Indices: 27364777--27364898 Score: 158
Period size: 44 Copynumber: 2.7 Consensus size: 44
27364767 CGTGCTGATG
*
27364777 CATGTCCCAGACATGTCTTACACTAGCACATCTCGTA-GCCGA-C
1 CATGTCCCAGACATGTCTTACACTGGCACATCTCG-AGGCCGAGC
*
27364820 ACATGTCCCAGACATGTCTGACACTGGCTAACATCTCGAGGCCGATGC
1 -CATGTCCCAGACATGTCTTACACTGGC--ACATCTCGAGGCCGA-GC
27364868 CATGTCCCAGACATGGTCTTACACTGGCACA
1 CATGTCCCAGACAT-GTCTTACACTGGCACA
27364899 CAAATCTCAT
Statistics
Matches: 69, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
44 25 0.36
45 1 0.01
46 16 0.23
47 14 0.20
48 13 0.19
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCACATCTCGAGGCCGAGC
Found at i:27371241 original size:30 final size:30
Alignment explanation
Indices: 27371205--27371335 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
27371195 ATTGGTCTCG
* * * * *
27371205 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
27371235 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
27371263 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
27371293 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
27371322 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
27371336 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:27371275 original size:58 final size:58
Alignment explanation
Indices: 27371205--27371336 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
27371195 ATTGGTCTCG
* * * * *
27371205 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGGGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
* *
27371263 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGGGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
27371322 GCACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
27371337 ATTCACTATA
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGGGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:27379022 original size:30 final size:30
Alignment explanation
Indices: 27378986--27379116 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
27378976 GACAAGATTG
* * * * *
27378986 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
27379016 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
27379044 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
27379074 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
27379103 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
27379117 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:27379077 original size:58 final size:58
Alignment explanation
Indices: 27378986--27379116 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
27378976 GACAAGATTG
* * * * * *
27378986 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
27379044 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
27379103 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
27379117 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:27381375 original size:28 final size:28
Alignment explanation
Indices: 27381343--27381445 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
27381333 ATTGCATGAC
*
27381343 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
27381371 TATGAAAGTGATTGGGCCTAATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * *
27381399 TATGAATGTGATTGTGCCCGATGGACCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
27381427 TATGAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
27381446 AAAGGGGCCA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:27381408 original size:56 final size:57
Alignment explanation
Indices: 27381343--27381462 Score: 161
Period size: 56 Copynumber: 2.1 Consensus size: 57
27381333 ATTGCATGAC
* * * *
27381343 TATGAATGTGATTGGGCCTGACGGGCCATATGAAAGTGATTGGGCCT-AATGGGCCA
1 TATGAATGTGATTGGGCCCGACGGACCATATGAAAGAGATTGGGCCTAAAGGGGCCA
* * *
27381399 TATGAATGTGATTGTGCCCGATGGACCATATGAATGAGATTGGGCCTAAAGGGGCCA
1 TATGAATGTGATTGGGCCCGACGGACCATATGAAAGAGATTGGGCCTAAAGGGGCCA
*
27381456 AATGAAT
1 TATGAAT
27381463 AAGTATGGAT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
56 41 0.75
57 14 0.25
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (57 bp):
TATGAATGTGATTGGGCCCGACGGACCATATGAAAGAGATTGGGCCTAAAGGGGCCA
Found at i:27390825 original size:40 final size:40
Alignment explanation
Indices: 27390717--27390926 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
27390707 CGGGATTTAA
* * * * *
27390717 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
27390757 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27390797 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27390837 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27390877 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27390917 CCGGATATAT
1 CCGGATATAT
27390927 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:27398949 original size:40 final size:40
Alignment explanation
Indices: 27398841--27399050 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
27398831 CGGGATTTAA
* * * * *
27398841 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
27398881 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27398921 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27398961 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27399001 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27399041 CCGGATATAT
1 CCGGATATAT
27399051 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:27401135 original size:27 final size:27
Alignment explanation
Indices: 27401104--27401161 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
27401094 ACCCTCTAAT
* *
27401104 TGATAAAATGATTGTTATGCCCCTATG
1 TGATAAAATGACTGTTATGACCCTATG
* *
27401131 TGATAAAATGACTGTTTTGACCTTATG
1 TGATAAAATGACTGTTATGACCCTATG
27401158 TGAT
1 TGAT
27401162 GTATGATTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (27 bp):
TGATAAAATGACTGTTATGACCCTATG
Found at i:27402191 original size:37 final size:37
Alignment explanation
Indices: 27402132--27402240 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
27402122 AGCTCAGACG
* *
27402132 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
27402169 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
27402206 TAATCTCCACACGTAGTCATCAGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
27402241 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:27402510 original size:48 final size:49
Alignment explanation
Indices: 27402386--27402522 Score: 231
Period size: 50 Copynumber: 2.8 Consensus size: 49
27402376 GCACATCGCC
* *
27402386 TACATATTTCACACTAGCCACTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
*
27402436 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
27402484 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
27402523 TGCATGTTCA
Statistics
Matches: 83, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
48 39 0.47
50 44 0.53
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:27402571 original size:47 final size:47
Alignment explanation
Indices: 27402492--27402685 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
27402482 CATACATATT
* * * *
27402492 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
27402539 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
27402586 TCACATTGGCCATTTGGCCTTATCACATATATACATGTTTACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
27402633 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
27402680 TCACAT
1 TCACAT
27402686 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:27402613 original size:94 final size:94
Alignment explanation
Indices: 27402445--27402685 Score: 263
Period size: 94 Copynumber: 2.6 Consensus size: 94
27402435 ATATATATTT
* * * *
27402445 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* * *
27402507 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTACCACATATATACATGTTCACATTCAC
* ** * *
27402540 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTTGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* * *
27402605 TTATCACATATATACATGTTTACATTCAT
66 TTACCACATATATACATGTTCACATTCAC
* * *
27402634 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
27402686 AAAATCCTAA
Statistics
Matches: 124, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
93 1 0.01
94 90 0.73
95 19 0.15
96 4 0.03
97 10 0.08
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATACATGTTCACATTCAC
Found at i:27406109 original size:2 final size:2
Alignment explanation
Indices: 27406102--27406130 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
27406092 TTATCAATGA
27406102 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27406131 AATCAAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27407026 original size:38 final size:38
Alignment explanation
Indices: 27406979--27407286 Score: 395
Period size: 38 Copynumber: 8.1 Consensus size: 38
27406969 TTAAGCTCGA
* **
27406979 ATATAATACCAGCACTAAGCCTGCAGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATAAAACCCGG
** *
27407017 ATATAATACCAGCACTAAGCCTGC-GGATTTAACCAGG
1 ATATAATACCAGCACTAAGCCTGCGGGATAAAACCCGG
** *
27407054 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCTG
1 ATATAATACCAGCACTAAGCCTGCGGGATAAAACCCGG
* **
27407092 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCAA
1 ATATAATACCAGCACTAAGCCTGCGGGATAAAACCCGG
27407130 ATATAATACCAGCA-TGAAGCCTGCGGGATAAAACCCGG
1 ATATAATACCAGCACT-AAGCCTGCGGGATAAAACCCGG
* * *
27407168 ATATAATACCAGCACGAAGCCTGTGGGATAAAACACGG
1 ATATAATACCAGCACTAAGCCTGCGGGATAAAACCCGG
* * *
27407206 ATATAATACAAGCACAAAGCTTGCGGGATAAAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATAAAACCCGG
* ** *
27407244 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
1 ATATAATACCAGCACTAAGCCTGCGGGATAAAACCCGG
27407282 ATATA
1 ATATA
27407287 CATCAAATAT
Statistics
Matches: 242, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
37 36 0.15
38 206 0.85
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (38 bp):
ATATAATACCAGCACTAAGCCTGCGGGATAAAACCCGG
Found at i:27409595 original size:31 final size:31
Alignment explanation
Indices: 27409559--27409668 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
27409549 TTTAACGGTT
*
27409559 ACTGGGCCAAAGCTTTTTCATAAATCATATC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
*
27409590 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
* *
27409621 ACTGGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
27409652 ACTGGGCCAAAGCCTTT
1 ACTGGGCCAAAGCCTTT
27409669 ACTGTAAAAG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (31 bp):
ACTGGGCCAAAGCCTTTTCATAAATCATATC
Found at i:27409742 original size:42 final size:42
Alignment explanation
Indices: 27409691--27409782 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
27409681 TGGCCCATAG
* ** *
27409691 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
27409733 -CCCTATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCC-ATTTCAATATCACATGAAATACCAATGAATGTATGCAA
27409775 GCCCATTT
1 GCCCATTT
27409783 GGGGAGACTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
41 3 0.07
42 37 0.86
43 3 0.07
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:27409998 original size:26 final size:26
Alignment explanation
Indices: 27409927--27410101 Score: 237
Period size: 26 Copynumber: 6.8 Consensus size: 26
27409917 CCTCTTTAAT
**
27409927 AACTGGGGCA-AAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
27409952 AACTGGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
27409977 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* **
27410003 AACTGGGGCATAAACCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
27410029 AACTGGGGCATAAGCCCTTTTTAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
27410055 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
27410081 AACTAGGGCATAAGCTCTTTT
1 AACTGGGGCATAAGCCCTTTT
27410102 ACACTTCCTC
Statistics
Matches: 134, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 33 0.25
26 101 0.75
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:27410040 original size:52 final size:52
Alignment explanation
Indices: 27409927--27410101 Score: 264
Period size: 52 Copynumber: 3.4 Consensus size: 52
27409917 CCTCTTTAAT
** *
27409927 AACTGGGGCA-AAGCCCTTTTTGGTAAACTGGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTTAATAAACTGGGGCATAAGCCCTTTTCGGTA
* * *
27409977 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAACCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTTAATAAACTGGGGCATAAGCCCTTTTCGGTA
27410029 AACTGGGGCATAAGCCCTTTTTAATAAACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTAATAAACTGGGGCATAAGCCCTTTTCGGTA
* *
27410081 AACTAGGGCATAAGCTCTTTT
1 AACTGGGGCATAAGCCCTTTT
27410102 ACACTTCCTC
Statistics
Matches: 112, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
50 10 0.09
51 22 0.20
52 80 0.71
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTTAATAAACTGGGGCATAAGCCCTTTTCGGTA
Found at i:27410101 original size:78 final size:77
Alignment explanation
Indices: 27409927--27410101 Score: 271
Period size: 78 Copynumber: 2.3 Consensus size: 77
27409917 CCTCTTTAAT
*
27409927 AACTGGGGCA-AAGCCCTTTTTGGTAAACTGGGGCAAAGCCCTTTTCAGTAAACTGGGGCATAAG
1 AACTGGGGCATAAGCCCTTTTTGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAG
27409991 CCCTTTTCAATA
66 CCCTTTTCAATA
* *
27410003 AACTGGGGCATAAACCCTTTTTGGTAAACTGGGGCATAAGCCCTTTTTAATAAACTGGGGCATAA
1 AACTGGGGCATAAGCCCTTTTTGGTAAACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAA
**
27410068 GCCCTTTTCGGTA
65 GCCCTTTTCAATA
* *
27410081 AACTAGGGCATAAGCTCTTTT
1 AACTGGGGCATAAGCCCTTTT
27410102 ACACTTCCTC
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
76 10 0.11
77 24 0.27
78 55 0.62
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (77 bp):
AACTGGGGCATAAGCCCTTTTTGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAG
CCCTTTTCAATA
Found at i:27410910 original size:26 final size:25
Alignment explanation
Indices: 27410877--27410966 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 25
27410867 TCATACGGAA
27410877 CATA-AGGGCATATTCGTCACTTTAC
1 CATACAGGGC-TATTCGTCACTTTAC
* *
27410902 CATACAGGGGTATTATGGTCACTTTAC
1 CATACAGGGCTA-T-TCGTCACTTTAC
*
27410929 CCTACAGGGGCT-TTACGATCACTTTAC
1 CATACA-GGGCTATT-CG-TCACTTTAC
*
27410956 CCTACAGGGCT
1 CATACAGGGCT
27410967 TTACGGTCTT
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
25 7 0.13
26 12 0.22
27 31 0.57
28 4 0.07
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (25 bp):
CATACAGGGCTATTCGTCACTTTAC
Found at i:27410926 original size:27 final size:27
Alignment explanation
Indices: 27410892--27410974 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
27410882 GGGCATATTC
* *
27410892 GTCACTTTACCATACAGGGG-TATTATG
1 GTCACTTTACCCTACAGGGGCT-TTACG
27410919 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
27410946 ATCACTTTACCCTACA-GGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
27410972 GTC
1 GTC
27410975 TTTTTACCTA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 12 0.24
27 38 0.75
28 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:27411056 original size:27 final size:27
Alignment explanation
Indices: 27411026--27411079 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
27411016 GGGTGTTTTG
27411026 GTAAATCTACAAACCAAGGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
* * ** *
27411053 GTAATTTTGTAAACCAATGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
27411080 ATAATTTTTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (27 bp):
GTAAATCTACAAACCAAGGGTATTTCA
Found at i:27411084 original size:27 final size:27
Alignment explanation
Indices: 27411036--27411121 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
27411026 GTAAATCTAC
*
27411036 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAATAATTTTGT
*
27411063 AAACCAATGGTATTTCAATAATTTT-T
1 AAACCAAGGGTATTTCAATAATTTTGT
* *
27411089 AGAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCAATAATTTTGT
27411119 AAA
1 AAA
27411122 TTAGGGGTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 1 0.02
27 23 0.46
28 6 0.12
29 19 0.38
30 1 0.02
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAATAATTTTGT
Found at i:27411140 original size:27 final size:27
Alignment explanation
Indices: 27411123--27411222 Score: 139
Period size: 27 Copynumber: 3.7 Consensus size: 27
27411113 TTTTGTAAAT
27411123 TAGGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * *
27411149 TTGAGGGTATTTCGGTAATTTCACAAAC
1 TAG-GGGTATTTTGGTAATTTTACAAAC
*
27411177 TAGTGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
*
27411204 TAGGGGCATTTTGGTAATT
1 TAGGGGTATTTTGGTAATT
27411223 CTATCCTATA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.03
27 59 0.94
28 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:27411141 original size:56 final size:54
Alignment explanation
Indices: 27411033--27411202 Score: 155
Period size: 54 Copynumber: 3.1 Consensus size: 54
27411023 TTGGTAAATC
* * * ***
27411033 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCAATAATTTT
1 TACAAATCAAGGGTATTTCA-TAATTTTGTAAACTAGTGGTATTTTGGTAATTTT
* * *
27411088 TAGAAAGTCAAGGGTATTTCTATAATTTTGTAAATTAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTC-ATAATTTTGTAAACTAGTGGTATTTTGGTAATTTT
** * ***
27411143 TACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTC-ATAATTTTGTAAACTAGTGGTATTTTGGTAATTTT
27411197 TACAAA
1 TACAAA
27411203 CTAGGGGCAT
Statistics
Matches: 94, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
54 45 0.48
55 13 0.14
56 35 0.37
57 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.40
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCATAATTTTGTAAACTAGTGGTATTTTGGTAATTTT
Found at i:27411300 original size:26 final size:26
Alignment explanation
Indices: 27411242--27411302 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
27411232 AGGAGTATTT
*
27411242 TAGTAATTTCACAATCGAGGGTAAAA
1 TAGTAATTTCAAAATCGAGGGTAAAA
*
27411268 -CGATAATTTCAAAATCGAGGGTAAAA
1 TAG-TAATTTCAAAATCGAGGGTAAAA
27411294 TAGTAATTT
1 TAGTAATTT
27411303 TGTAAATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 1 0.03
26 28 0.93
27 1 0.03
ACGTcount: A:0.43, C:0.10, G:0.18, T:0.30
Consensus pattern (26 bp):
TAGTAATTTCAAAATCGAGGGTAAAA
Found at i:27413655 original size:31 final size:31
Alignment explanation
Indices: 27413617--27413726 Score: 186
Period size: 31 Copynumber: 3.5 Consensus size: 31
27413607 TTTAACAGTT
27413617 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
27413648 ACTGGGCC-AGAGCCTTTTCATAAATCATATC
1 ACTGGGCCGA-AGCCTTTTCATAAATCATATC
* *
27413679 ACTAGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
27413710 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
27413727 ACTGTAAACG
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
30 1 0.01
31 72 0.97
32 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:27413797 original size:42 final size:42
Alignment explanation
Indices: 27413750--27413841 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
27413740 TGGCCCATAG
* ** *
27413750 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
27413792 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
27413834 GCCTATTT
1 GCCCATTT
27413842 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:27414060 original size:26 final size:26
Alignment explanation
Indices: 27413984--27414131 Score: 185
Period size: 25 Copynumber: 5.8 Consensus size: 26
27413974 CCTCTTTAAT
* *
27413984 AACTGGGGCA-AATCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
* *
27414009 AACTGGGGCA-AAGACCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
27414034 AACTGGGGCATAAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
* *
27414060 AATTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
* *
27414086 AACTAGGGCATAAG-CCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
* *
27414111 AACTAGGGCATAAGCCATTTT
1 AACTGGGGCATAAGCCCTTTT
27414132 GCACTTCCTC
Statistics
Matches: 108, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
25 54 0.50
26 54 0.50
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGATA
Found at i:27414125 original size:51 final size:52
Alignment explanation
Indices: 27413984--27414131 Score: 203
Period size: 51 Copynumber: 2.9 Consensus size: 52
27413974 CCTCTTTAAT
* * *
27413984 AACTGGGGCA-AATCCCTTTTCGGTAAACTGGGGCA-AAGACCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* * *
27414034 AACTGGGGCATAAGCCCTTTTCGATAAATTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
27414086 AACTAGGGCATAAG-CCTTTTCGGTAAACTAGGGCATAAGCCATTTT
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
27414132 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
50 10 0.11
51 50 0.57
52 27 0.31
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (52 bp):
AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:27414975 original size:27 final size:26
Alignment explanation
Indices: 27414938--27415013 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 26
27414928 TATTCGTCAT
*
27414938 TTTACCATACAGGGGTATTACGATCAC
1 TTTACCCTACAGGGGT-TTACGATCAC
*
27414965 TTTACCCTACAGGGGCTTTACGATCAG
1 TTTACCCTACAGGGG-TTTACGATCAC
*
27414992 TTTACCCTACAAGGGTTGTACG
1 TTTACCCTACAGGGGTT-TACG
27415014 GTCTTTTTAC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 2 0.05
27 41 0.93
28 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (26 bp):
TTTACCCTACAGGGGTTTACGATCAC
Found at i:27415108 original size:27 final size:27
Alignment explanation
Indices: 27415078--27415211 Score: 87
Period size: 27 Copynumber: 4.9 Consensus size: 27
27415068 GTAAATCTAC
27415078 AAACCAAGGGTATTTCA-GTAATTTTGT
1 AAACCAAGGGTATTT-ATGTAATTTTGT
* * ***
27415105 AAACAAATGGTATTTCCATAATTTT-T
1 AAACCAAGGGTATTTATGTAATTTTGT
*
27415131 AGAAAGTCAAGGGTATTTATGTAATTTTGT
1 --AAA-CCAAGGGTATTTATGTAATTTTGT
* **
27415161 AAATC-AGGAGTATTTATGTAATTTTAC
1 AAACCAAGG-GTATTTATGTAATTTTGT
**
27415188 AAACTGAGGGTATTT-TGGTAATTT
1 AAACCAAGGGTATTTAT-GTAATTT
27415212 CACAAACTAG
Statistics
Matches: 85, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
26 5 0.06
27 54 0.64
28 9 0.11
29 16 0.19
30 1 0.01
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTATGTAATTTTGT
Found at i:27415216 original size:27 final size:26
Alignment explanation
Indices: 27415140--27415268 Score: 129
Period size: 27 Copynumber: 4.8 Consensus size: 26
27415130 TAGAAAGTCA
**
27415140 AGGGTATTTAT-GTAATTTTGTAAA-T
1 AGGGTATTT-TGGTAATTTTACAAACT
27415165 CAGGAGTATTTAT-GTAATTTTACAAACT
1 -AGG-GTATTT-TGGTAATTTTACAAACT
*
27415193 GAGGGTATTTTGGTAATTTCACAAACT
1 -AGGGTATTTTGGTAATTTTACAAACT
*
27415220 AGTGGTATTTTGGTAATTTTATAAACT
1 AG-GGTATTTTGGTAATTTTACAAACT
*
27415247 AGGGGAATTTTGGTAATTTTAC
1 A-GGGTATTTTGGTAATTTTAC
27415269 CCTATAGGGG
Statistics
Matches: 90, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
26 6 0.07
27 79 0.88
28 5 0.06
ACGTcount: A:0.31, C:0.06, G:0.20, T:0.43
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACT
Found at i:27415290 original size:54 final size:53
Alignment explanation
Indices: 27415170--27415297 Score: 125
Period size: 54 Copynumber: 2.4 Consensus size: 53
27415160 TAAATCAGGA
* *
27415170 GTATTTATGTAATTTTACAAACTGAGGGTATTTTGGTAATTTCACAAACTAGTG
1 GTATTTA-GTAATTTTACAAACTGAGGGAATTTTGGTAATTTCACAAACTAGGG
* * * **
27415224 GTATTTTGGTAATTTTATAAACT-AGGGGAATTTTGGTAATTTTACCCTA-TAGGG
1 GTA-TTTAGTAATTTTACAAACTGA-GGGAATTTTGGTAATTTCA-CAAACTAGGG
*
27415278 GTATTTCAGTAATTTCACAA
1 GTATTT-AGTAATTTTACAA
27415298 TCGAGGGTAA
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
53 4 0.07
54 51 0.85
55 5 0.08
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.41
Consensus pattern (53 bp):
GTATTTAGTAATTTTACAAACTGAGGGAATTTTGGTAATTTCACAAACTAGGG
Found at i:27415315 original size:26 final size:26
Alignment explanation
Indices: 27415284--27415343 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
27415274 AGGGGTATTT
*
27415284 CAGTAATTTCACAATCGAGGGTAAAA
1 CAGTAATTTCACAATCGAAGGTAAAA
*
27415310 CGGTAATTTCACAATCGAAGGTAAAA
1 CAGTAATTTCACAATCGAAGGTAAAA
27415336 CAGTAATT
1 CAGTAATT
27415344 CTGTAAATCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.25
Consensus pattern (26 bp):
CAGTAATTTCACAATCGAAGGTAAAA
Found at i:27415360 original size:27 final size:26
Alignment explanation
Indices: 27415296--27415386 Score: 87
Period size: 27 Copynumber: 3.4 Consensus size: 26
27415286 GTAATTTCAC
* * *
27415296 AATCGAGGGTAAAACGGTAATT-TCA
1 AATCAAGGGTAAAACAGTAATTCTTA
27415321 CAATCGAA-GGTAAAACAGTAATTCTGTA
1 -AATC-AAGGGTAAAACAGTAATTCT-TA
*
27415349 AATCAAGGGTAAGACAGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTCT-TA
*
27415376 AATCGAGGGTA
1 AATCAAGGGTA
27415387 CTTTAGTAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
26 20 0.36
27 34 0.62
28 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (26 bp):
AATCAAGGGTAAAACAGTAATTCTTA
Found at i:27415397 original size:27 final size:27
Alignment explanation
Indices: 27415329--27415386 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
27415319 CACAATCGAA
* *
27415329 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTAAGACAGTAATTCTATAAATCAAG
*
27415356 GGTAAGACAGTAATTCTATAAATCGAG
1 GGTAAGACAGTAATTCTATAAATCAAG
27415383 GGTA
1 GGTA
27415387 CTTTAGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.26
Consensus pattern (27 bp):
GGTAAGACAGTAATTCTATAAATCAAG
Found at i:27436311 original size:27 final size:27
Alignment explanation
Indices: 27436281--27436344 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
27436271 TACTGTTCTG
27436281 GTGGCTTTGCCACGTTT-TCTGATATTA
1 GTGGCTTTGCCACGTTTATC-GATATTA
** *
27436308 GTGGCTACGCCACGTTTATCGCTATTA
1 GTGGCTTTGCCACGTTTATCGATATTA
*
27436335 GTAGCTTTGC
1 GTGGCTTTGC
27436345 TGCATTACTA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
27 28 0.93
28 2 0.07
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.39
Consensus pattern (27 bp):
GTGGCTTTGCCACGTTTATCGATATTA
Found at i:27436570 original size:33 final size:33
Alignment explanation
Indices: 27436507--27436570 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
27436497 AGGCCCACAT
* * * *
27436507 TGTTACTGCATAGGGCTTAGGCCTAAACTGTAC
1 TGTTAATGAATAGGGCTCAGGCCCAAACTGTAC
*
27436540 TGTTAATGAATAGGGCTCAGGCCCAGACTGT
1 TGTTAATGAATAGGGCTCAGGCCCAAACTGT
27436571 TACTATATGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (33 bp):
TGTTAATGAATAGGGCTCAGGCCCAAACTGTAC
Found at i:27439522 original size:23 final size:22
Alignment explanation
Indices: 27439496--27439546 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
27439486 TTATGAAAGT
27439496 ATGAATGCT-TATATGCTATGTA
1 ATGAATGCTAT-TATGCTATGTA
* *
27439518 CATGAAAGCTATTATGTTATGTA
1 -ATGAATGCTATTATGCTATGTA
27439541 ATGAAT
1 ATGAAT
27439547 TTGCTAACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 5 0.21
23 18 0.75
24 1 0.04
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (22 bp):
ATGAATGCTATTATGCTATGTA
Found at i:27445146 original size:28 final size:28
Alignment explanation
Indices: 27445077--27445177 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
27445067 GACAAGATTG
* * * *
27445077 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
27445107 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
27445135 GCACTAAGTGTGCGAG-CTGAACGTATATA
1 GCACTAAGTGTGCGAGTTTG-A-TTATATA
27445164 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
27445178 GATTCACTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 20 0.32
30 18 0.29
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:27445171 original size:29 final size:28
Alignment explanation
Indices: 27445106--27445177 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
27445096 AAAATTGTAC
* *
27445106 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAGTATAT
27445134 AGCACTAAGTGTGCGAG-CTGAACGTATAT
1 AGCACTAAGTGTGCGAGTCTG-A-GTATAT
27445163 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
27445178 GATTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 20 0.50
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAGTATAT
Found at i:27452937 original size:28 final size:28
Alignment explanation
Indices: 27452868--27452968 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
27452858 GACAAGATTG
* * * *
27452868 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
27452898 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
27452926 GCACTAAGTGTGCGAG-CTGAACGTATATA
1 GCACTAAGTGTGCGAGTTTG-A-TTATATA
27452955 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
27452969 GATTCACTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 20 0.32
30 18 0.29
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:27452962 original size:29 final size:28
Alignment explanation
Indices: 27452897--27452968 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
27452887 AAAATTGTAC
* *
27452897 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAGTATAT
27452925 AGCACTAAGTGTGCGAG-CTGAACGTATAT
1 AGCACTAAGTGTGCGAGTCTG-A-GTATAT
27452954 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
27452969 GATTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 20 0.50
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAGTATAT
Found at i:27453934 original size:37 final size:35
Alignment explanation
Indices: 27453861--27453984 Score: 148
Period size: 37 Copynumber: 3.5 Consensus size: 35
27453851 TCAATCATGC
*
27453861 ACTGGGCCGTAGCCCTTTTCACATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTT--CATTTC-TATTTCATAAT
27453900 ACTGGGCCGAAGCCTTTTCATGTTTCTATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCA--TTTCTATTTCATAAT
*
27453937 ACTGGGCCGAAGCCTTTTCA----TATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATTTCTATTTCATAAT
27453968 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
27453985 ACTGTAAACG
Statistics
Matches: 81, Mismatches: 2, Indels: 12
0.85 0.02 0.13
Matches are distributed among these distances:
31 27 0.33
36 2 0.02
37 31 0.38
38 10 0.12
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATTTCTATTTCATAAT
Found at i:27453964 original size:31 final size:30
Alignment explanation
Indices: 27453922--27453984 Score: 108
Period size: 31 Copynumber: 2.1 Consensus size: 30
27453912 CCTTTTCATG
27453922 TTTCTATTTCATAATACTGGGCCGAAGCCT
1 TTTCTATTTCATAATACTGGGCCGAAGCCT
*
27453952 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTC-TATTTCATAATACTGGGCCGAAGCCT
27453983 TT
1 TT
27453985 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (30 bp):
TTTCTATTTCATAATACTGGGCCGAAGCCT
Found at i:27454218 original size:25 final size:24
Alignment explanation
Indices: 27454176--27454246 Score: 85
Period size: 23 Copynumber: 3.0 Consensus size: 24
27454166 GCTTTATCAT
*
27454176 ATAACTGGAGGCC-TAGCCTCTTTTA
1 ATAACTGG-GGCCAAAGCC-CTTTTA
27454201 ATAACTGGGGCCAAAGCCC-TTTA
1 ATAACTGGGGCCAAAGCCCTTTTA
27454224 ATAACTGGGG-CATAAGCCCTTTT
1 ATAACTGGGGCCA-AAGCCCTTTT
27454247 TCACTTCCTC
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
22 2 0.05
23 20 0.48
24 8 0.19
25 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCCAAAGCCCTTTTA
Found at i:27454322 original size:20 final size:20
Alignment explanation
Indices: 27454297--27454356 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
27454287 TATGATTACC
27454297 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
27454317 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
27454337 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
27454357 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:27454431 original size:25 final size:25
Alignment explanation
Indices: 27454399--27454446 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
27454389 ATACATAAAC
* * *
27454399 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
27454424 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
27454447 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:27462153 original size:38 final size:38
Alignment explanation
Indices: 27462111--27462216 Score: 178
Period size: 37 Copynumber: 2.8 Consensus size: 38
27462101 TCAATCATGC
* *
27462111 ACTGGGCCGTAGCCCTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
*
27462149 ACTGGGCCGAAGCCTTTTCATGTTTC-TATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
27462186 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
27462217 ACTGGGCCGA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
37 36 0.57
38 27 0.43
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:27462179 original size:37 final size:36
Alignment explanation
Indices: 27462111--27462233 Score: 157
Period size: 37 Copynumber: 3.5 Consensus size: 36
27462101 TCAATCATGC
* *
27462111 ACTGGGCCGTAGCCCTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCAT-TTTC-TATTTCATAAT
27462149 ACTGGGCCGAAGCCTTTTCATGTTTCTATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCAT-TTTCTATTTCATAAT
*
27462186 ACTGGGCCGAAGCCTTTTCA-----TATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATTTTCTATTTCATAAT
27462217 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
27462234 ACTGTAAACG
Statistics
Matches: 81, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
31 27 0.33
37 31 0.38
38 23 0.28
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (36 bp):
ACTGGGCCGAAGCCTTTTCATTTTCTATTTCATAAT
Found at i:27462213 original size:31 final size:30
Alignment explanation
Indices: 27462171--27462233 Score: 108
Period size: 31 Copynumber: 2.1 Consensus size: 30
27462161 CCTTTTCATG
27462171 TTTCTATTTCATAATACTGGGCCGAAGCCT
1 TTTCTATTTCATAATACTGGGCCGAAGCCT
*
27462201 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTC-TATTTCATAATACTGGGCCGAAGCCT
27462232 TT
1 TT
27462234 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (30 bp):
TTTCTATTTCATAATACTGGGCCGAAGCCT
Found at i:27462437 original size:40 final size:40
Alignment explanation
Indices: 27462356--27462439 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 40
27462346 TACCAACCAA
* *
27462356 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGATTATAT
*
27462396 CCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGATTATAT
27462436 CCGG
1 CCGG
27462440 TTATATTCCG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.03
40 39 0.98
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGATTATAT
Found at i:27466290 original size:40 final size:40
Alignment explanation
Indices: 27466231--27466372 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
27466221 AAATTGAATG
* * *
27466231 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
27466271 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
27466311 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
27466351 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
27466373 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:27466373 original size:40 final size:39
Alignment explanation
Indices: 27466270--27466398 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
27466260 TGCTGGAAAT
* * *
27466270 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
27466310 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
27466350 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
27466390 TATATCCGG
1 TATATCCGG
27466399 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:27469816 original size:25 final size:25
Alignment explanation
Indices: 27469788--27469836 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
27469778 TAACATAACC
* *
27469788 CTAGGGGTATAATGGTCATTTTCAG
1 CTAGGGGTAAAAAGGTCATTTTCAG
27469813 CTAGGGGTAAAAAGGTCATTTTCA
1 CTAGGGGTAAAAAGGTCATTTTCA
27469837 CATTATAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (25 bp):
CTAGGGGTAAAAAGGTCATTTTCAG
Found at i:27473279 original size:47 final size:47
Alignment explanation
Indices: 27473228--27473332 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
27473218 TAGTATTAAT
*
27473228 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
27473275 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
27473322 AATGTGATAAG
1 TATGTGATAAG
27473333 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:27476633 original size:40 final size:39
Alignment explanation
Indices: 27476443--27476651 Score: 262
Period size: 40 Copynumber: 5.2 Consensus size: 39
27476433 AGTTATATAG
* *
27476443 CCGGGCTAAGTCCCAAAGAGCATTCGTGCT-G-ATGTTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTATG-TAT
* *
27476481 AGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGT-TATAT
1 --CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-A-GTATGTAT
*
27476523 CCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT-ATGTAT
27476563 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT-ATGTAT
*
27476603 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT-ATGTAT
*
27476643 CCAGGCTAA
1 CCGGGCTAA
27476652 ACCTCGAAGG
Statistics
Matches: 153, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 1 0.01
40 145 0.95
42 3 0.02
43 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTATGTAT
Found at i:27476659 original size:120 final size:118
Alignment explanation
Indices: 27476443--27476671 Score: 302
Period size: 120 Copynumber: 1.9 Consensus size: 118
27476433 AGTTATATAG
27476443 CCGGGCTAAGTCCCAAAGAGCATTCGTGCTGATGTTATAGCCGGGCTAAGTCCCGAAGAGCATTC
1 CCGGGCTAAGTCCCAAAGAGCATTCGTGCTGATGTTATA-CCGGGCTAAGTCCCGAAGAGCATTC
* * *** *
27476508 GTGCTGATGTTATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTAT
65 GTGCTGATGATATATCCAGGCTAAACCTCGAAG-GCATTCATGCTAGTGATGTAT
* * *
27476563 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG-TAT-CCGGGCTAAGTTCCGAAGAGCAT
1 CCGGGCTAAGTCCCAAAGAGCATTCGTGCT-G--ATGTTATACCGGGCTAAGTCCCGAAGAGCAT
27476626 TCGTGCT-AGTGATATATCCAGGCTAAACCTCGAAGGCATTCATGCT
63 TCGTGCTGA-TGATATATCCAGGCTAAACCTCGAAGGCATTCATGCT
27476672 GGAGTTATGA
Statistics
Matches: 96, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
119 11 0.11
120 78 0.81
121 1 0.01
122 3 0.03
123 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (118 bp):
CCGGGCTAAGTCCCAAAGAGCATTCGTGCTGATGTTATACCGGGCTAAGTCCCGAAGAGCATTCG
TGCTGATGATATATCCAGGCTAAACCTCGAAGGCATTCATGCTAGTGATGTAT
Found at i:27476752 original size:28 final size:28
Alignment explanation
Indices: 27476683--27476753 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
27476673 GAGTTATGAG
* *
27476683 GCACTGTGTGTGCAAGTTCTTCAACTGA
1 GCACTATGTGTGCGAGTTCTTCAACTGA
*
27476711 GCACTATGTGTGCGAGTTCTTTAA-TCGA
1 GCACTATGTGTGCGAGTTCTTCAACT-GA
*
27476739 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
27476754 AATCAGTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTCAACTGA
Found at i:27479032 original size:2 final size:2
Alignment explanation
Indices: 27479025--27479067 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
27479015 GTTAATGCTG
27479025 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
27479067 T
1 T
27479068 CAACGATTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:27480236 original size:48 final size:48
Alignment explanation
Indices: 27480161--27480593 Score: 731
Period size: 48 Copynumber: 9.0 Consensus size: 48
27480151 CAAGATAAAT
*
27480161 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
* *
27480209 ATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
27480257 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
27480305 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
*
27480353 ATATGTATATGTGATAAAGCCGAATGGCTAACGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
27480401 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
* * *
27480449 ATAGGTATATATGGTAAAGCCGAATGGCTAACGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
**
27480497 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
* * * ** *
27480545 ATACGTATATGTGGTAAAGCCAAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
27480593 A
1 A
27480594 CGTGTGTATA
Statistics
Matches: 368, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 368 1.00
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.29
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
Found at i:27480880 original size:37 final size:37
Alignment explanation
Indices: 27480735--27480879 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
27480725 GGAAATATAT
*
27480735 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
27480772 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
27480809 TCCGGGTAAGACCCGATGACTACGTGTGGTGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
27480846 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
27480880 TCATCTGAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:27485523 original size:43 final size:42
Alignment explanation
Indices: 27485403--27485605 Score: 164
Period size: 44 Copynumber: 4.7 Consensus size: 42
27485393 AACTCAAACA
* * * *
27485403 ATGCAAACGTCCTAGACGTGGTCTTACATGT-AATCAAATATCA
1 ATGCCAACGTCCTAGACATGGTCTTACACGTAAATC-AA-ATCG
* * * *
27485446 ATGCC-ACTGTCCCAAACAGGGTCTTACACG-AAATCAAATATG
1 ATGCCAAC-GTCCTAGACATGGTCTTACACGTAAATCAAAT-CG
* *
27485488 ATGTCAATGTCCTAGACATGGTCTTACACGTAAATCTTAAATCG
1 ATGCCAACGTCCTAGACATGGTCTTACACGTAAATC--AAATCG
*
27485532 ATGCCAACAT-CTCA-ACCATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAACGTCCT-AGA-CATGGTCTTACACGTAAA--TCAAATCG
* *
27485576 GTGCCAACGTCCTAGACGTGGTCTTACACG
1 ATGCCAACGTCCTAGACATGGTCTTACACG
27485606 ATAACACATA
Statistics
Matches: 127, Mismatches: 20, Indels: 25
0.74 0.12 0.15
Matches are distributed among these distances:
41 2 0.02
42 27 0.21
43 34 0.27
44 55 0.43
45 7 0.06
46 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCTAGACATGGTCTTACACGTAAATCAAATCG
Found at i:27485601 original size:88 final size:85
Alignment explanation
Indices: 27485403--27485605 Score: 214
Period size: 86 Copynumber: 2.4 Consensus size: 85
27485393 AACTCAAACA
* * *
27485403 ATGCAAACGTCCTAGACGTGGTCTTACATGTAATCAAATATCAATGCCACTGTCCCAAACAGGGT
1 ATGCCAACGTCCTAGACGTGGTCTTACACGTAATCAAATATCAATGCCACTATCCCAAACAGGGT
*
27485468 CTTACACGAAATCAAATATG
66 CTTACACGAAATCAAATACG
* * * * * * * *
27485488 ATGTCAATGTCCTAGACATGGTCTTACACGTAAATCTTAA-ATCGATGCCAAC-ATCTCAACCAT
1 ATGCCAACGTCCTAGACGTGGTCTTACACGT-AATC-AAATATCAATGCC-ACTATCCCAAACAG
27485551 GGTCTTACACGTAAATCTCAAAT-CG
63 GGTCTTACACG-AAA--TCAAATACG
*
27485576 GTGCCAACGTCCTAGACGTGGTCTTACACG
1 ATGCCAACGTCCTAGACGTGGTCTTACACG
27485606 ATAACACATA
Statistics
Matches: 96, Mismatches: 16, Indels: 9
0.79 0.13 0.07
Matches are distributed among these distances:
85 26 0.27
86 30 0.31
87 7 0.07
88 27 0.28
89 6 0.06
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (85 bp):
ATGCCAACGTCCTAGACGTGGTCTTACACGTAATCAAATATCAATGCCACTATCCCAAACAGGGT
CTTACACGAAATCAAATACG
Found at i:27488018 original size:40 final size:40
Alignment explanation
Indices: 27487910--27488119 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
27487900 CGGGATTTAA
* * * * *
27487910 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
27487950 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27487990 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27488030 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27488070 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27488110 CCGGATATAT
1 CCGGATATAT
27488120 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Done.