Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 97 of 425
Found at i:28098832 original size:94 final size:93
Alignment explanation
Indices: 28098585--28098840 Score: 361
Period size: 94 Copynumber: 2.7 Consensus size: 93
28098575 GTATATTTGA
*
28098585 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAA-GCCGAATGGCCA
*
28098650 ATGTGATGAATGTGAACATGCATATATGT
65 ATGTGATGAATGCGAACATGCATATATGT
* *
28098679 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATATGGGCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATA-AGCCGAATGGCCA
28098744 ATGTGATGAATGCGAACATGCATATATGT
65 ATGTGATGAATGCGAACATGCATATATGT
** * * * ** *
28098773 GATAAGGTAGAATGGCCAATGTGATGAACGTGGAAGA-GTATATATGTGGCGAAGCCGAATGGCT
1 GATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGCATATATGT-GATAAGCCGAATGGCC
28098837 AATG
64 AATG
28098841 CGAAACGTGT
Statistics
Matches: 145, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
94 139 0.96
95 6 0.04
ACGTcount: A:0.34, C:0.12, G:0.30, T:0.25
Consensus pattern (93 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGCCGAATGGCCAA
TGTGATGAATGCGAACATGCATATATGT
Found at i:28098835 original size:47 final size:47
Alignment explanation
Indices: 28098560--28098800 Score: 383
Period size: 47 Copynumber: 5.1 Consensus size: 47
28098550 GATTTTATGA
** * * *
28098560 GATGAATGTGAATGTGTATATTTGAGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
28098607 GATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
28098654 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
28098701 GATGAATGTGAACATGCATATATGTGATATGGGCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* **
28098748 GATGAATGCGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
28098795 GATGAA
1 GATGAA
28098801 CGTGGAAGAG
Statistics
Matches: 181, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 181 1.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:28112165 original size:38 final size:40
Alignment explanation
Indices: 28112046--28112186 Score: 161
Period size: 40 Copynumber: 3.6 Consensus size: 40
28112036 CTACTCATTT
*
28112046 AAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTC-GCAC
1 AAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCAGCAC
*
28112086 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCA-CAC
1 AAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCAGCAC
* *
28112126 AAATG-CTTCGGATCTTAGTCCGGA-TTAGT-ACTTAGCAC
1 AAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCAGCAC
28112164 AAA-GCCTTCGGACTTAGCCCGGA
1 AAATGCCTTCGGACTTAGCCCGGA
28112187 CATCATTCGA
Statistics
Matches: 90, Mismatches: 6, Indels: 13
0.83 0.06 0.12
Matches are distributed among these distances:
37 15 0.17
38 21 0.23
39 13 0.14
40 39 0.43
41 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCAGCAC
Found at i:28120122 original size:40 final size:40
Alignment explanation
Indices: 28120085--28120230 Score: 199
Period size: 40 Copynumber: 3.6 Consensus size: 40
28120075 GCTACTCGTT
*
28120085 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
28120125 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
28120165 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
28120206 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
28120231 CATCATTCGA
Statistics
Matches: 94, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
39 3 0.03
40 79 0.84
41 12 0.13
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:28123234 original size:41 final size:41
Alignment explanation
Indices: 28123063--28123244 Score: 194
Period size: 41 Copynumber: 4.5 Consensus size: 41
28123053 GGGTTTAAAT
28123063 CCGAGCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
* * *
28123104 CCGAACTTAGTTTCGAAGGG-CTTTAGAGCCAGTG-TCATAA
1 CCGAGCTTGGTTTCGAAGGGCCTTT-GAGCCAGTGCTAATAA
* *
28123144 CCG-GACTTAGTTTCGAAGGGCCTTCGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTTTCGAAGGGCCTTTGAGCCAGT-G-CTAATAA
* * *
28123185 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAAGAA
1 CCGAGCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
* * *
28123226 TCGGGCTTGATTTCGAAGG
1 CCGAGCTTGGTTTCGAAGG
28123245 ATGTTTGTTC
Statistics
Matches: 117, Mismatches: 15, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
39 4 0.03
40 36 0.31
41 73 0.62
42 1 0.01
43 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (41 bp):
CCGAGCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
Found at i:28126266 original size:40 final size:40
Alignment explanation
Indices: 28126198--28126375 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
28126188 CCAAGGCCAA
* * * *
28126198 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* *
28126237 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * * *
28126277 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * *
28126317 CGGGTCTTAACCCGGATAT-A-AA-TTTCAGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCA-CA-AA-TGCCTT
*
28126357 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
28126376 CATTCAATTT
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 9 0.08
40 99 0.87
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
Found at i:28132468 original size:40 final size:39
Alignment explanation
Indices: 28132423--28132552 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
28132413 CGGAATATAA
28132423 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
28132463 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
28132503 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
28132543 CCGGATATAA
1 CCGGATATAA
28132553 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:28132567 original size:40 final size:40
Alignment explanation
Indices: 28132439--28132589 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
28132429 ATAACCATGT
* * *
28132439 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
28132479 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
28132519 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
28132559 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
28132590 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 15 0.16
40 74 0.81
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:28132573 original size:80 final size:79
Alignment explanation
Indices: 28132439--28132587 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
28132429 ATAACCATGT
*
28132439 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
28132504 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
28132519 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
28132582 CCGGAT
64 CCGGAT
28132588 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:28134683 original size:24 final size:24
Alignment explanation
Indices: 28134651--28134735 Score: 75
Period size: 24 Copynumber: 3.5 Consensus size: 24
28134641 TACTCATTCA
28134651 CACACATAGTGCCGCATTTCCTCG
1 CACACATAGTGCCGCATTTCCTCG
* *
28134675 CACACATAGTGCCATGTAGTTT-TTC-
1 CACACATAGTGCC--GCA-TTTCCTCG
**
28134700 CACACATAGTGCCGCATAACCTCG
1 CACACATAGTGCCGCATTTCCTCG
* *
28134724 CATACATCGTGC
1 CACACATAGTGC
28134736 TTAAATTTCT
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
22 1 0.02
23 4 0.08
24 23 0.48
25 13 0.27
26 4 0.08
27 3 0.06
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (24 bp):
CACACATAGTGCCGCATTTCCTCG
Found at i:28134683 original size:49 final size:50
Alignment explanation
Indices: 28134624--28134736 Score: 133
Period size: 49 Copynumber: 2.3 Consensus size: 50
28134614 TTTAAAGGTC
**
28134624 CGCACACATAGTGCTC-T-TACTCATTCACACACATAGTGCCGCATTTCCT
1 CGCACACATAGTGCTCATGTACTCATTC-CACACATAGTGCCGCATAACCT
* **
28134673 CGCACACATAGTGC-CATGTAGTTTTTCCACACATAGTGCCGCATAACCT
1 CGCACACATAGTGCTCATGTACTCATTCCACACATAGTGCCGCATAACCT
* *
28134722 CGCATACATCGTGCT
1 CGCACACATAGTGCT
28134737 TAAATTTCTT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
48 1 0.02
49 47 0.87
50 6 0.11
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (50 bp):
CGCACACATAGTGCTCATGTACTCATTCCACACATAGTGCCGCATAACCT
Found at i:28139151 original size:29 final size:28
Alignment explanation
Indices: 28139117--28139219 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
28139107 TAATCGATCA
*
28139117 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
*
28139146 CGCACACATAGTGCCATATAATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
28139175 CGCACACTTAGTGCCA-TACATTTCAAGCT
1 CGCACACTTAGTGCCATTA-ATTT-AAGCT
*
28139204 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
28139220 ATCTCGGAAC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 61 0.91
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGCT
Found at i:28145162 original size:40 final size:40
Alignment explanation
Indices: 28145106--28145273 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
28145096 CAATTGAATG
* *
28145106 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
28145147 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
28145186 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
28145226 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
28145266 ATATCCGG
1 ATATCCGG
28145274 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:28145239 original size:80 final size:79
Alignment explanation
Indices: 28145106--28145273 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
28145096 CAATTGAATG
* *
28145106 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
28145171 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
28145186 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
28145250 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
28145266 ATATCCGG
1 ATATCCGG
28145274 TTGTATTCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:28150527 original size:29 final size:28
Alignment explanation
Indices: 28150493--28150595 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
28150483 TAATCGATCA
*
28150493 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
*
28150522 CGCACACATAGTGCCATATAATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
28150551 CGCACACTTAGTGCCA-TACATTTCAAGCT
1 CGCACACTTAGTGCCATTA-ATTT-AAGCT
*
28150580 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
28150596 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 61 0.91
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGCT
Found at i:28162129 original size:46 final size:46
Alignment explanation
Indices: 28162028--28162115 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
28162018 TGTAACCCGC
* * * *
28162028 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
28162074 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
28162116 AACCATCCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:28172742 original size:40 final size:40
Alignment explanation
Indices: 28172663--28172839 Score: 182
Period size: 40 Copynumber: 4.5 Consensus size: 40
28172653 CGGATGATAA
* * * * *
28172663 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
28172703 CCGGGATATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATAT
* * *
28172743 TCGAGCTAAGACCCGAAGGCATTTGTG-TGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTTGTTATAT
*
28172783 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
28172823 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
28172840 ATACTTGGGT
Statistics
Matches: 112, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
38 1 0.01
39 16 0.14
40 93 0.83
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:28172801 original size:80 final size:79
Alignment explanation
Indices: 28172663--28172839 Score: 223
Period size: 80 Copynumber: 2.2 Consensus size: 79
28172653 CGGATGATAA
* * *
28172663 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGATATGTCCCGAAGGCATTTA
1 CCGG-CTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGATAAGACCCGAAGGCATTTA
*
28172728 TGCTAG-TGATTATAT
65 TGCGAGTTG-TTATAT
* * * * *
28172743 TCGAGCTAAGACCCGAAGGCATTTGTGTGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCG-GCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGATAAGACCCGAAGGCATTTA
28172808 TGCGAGTTGTTATAT
65 TGCGAGTTGTTATAT
28172823 CCGGCTAA-ATCCCGAAG
1 CCGGCTAAGA-CCCGAAG
28172840 ATACTTGGGT
Statistics
Matches: 84, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 12 0.14
80 68 0.81
81 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGATAAGACCCGAAGGCATTTAT
GCGAGTTGTTATAT
Found at i:28173107 original size:22 final size:22
Alignment explanation
Indices: 28173067--28173108 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
28173057 GAATGTGCAT
*
28173067 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
28173089 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
28173109 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:28175045 original size:10 final size:10
Alignment explanation
Indices: 28175032--28175070 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
28175022 ATATGTGAAT
*
28175032 ATATTATGGC
1 ATATCATGGC
28175042 ATATCATGTGC
1 ATATCATG-GC
*
28175053 ATATCGTGGC
1 ATATCATGGC
28175063 ATATCATG
1 ATATCATG
28175071 TACAAAAGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (10 bp):
ATATCATGGC
Found at i:28180617 original size:39 final size:39
Alignment explanation
Indices: 28180563--28180725 Score: 227
Period size: 39 Copynumber: 4.2 Consensus size: 39
28180553 TGTGTATGAA
* *
28180563 TGTGCGAATTGTGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
28180602 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * * *
28180641 GGTGCGAGCTATGATATCCGGGCTAAGGCAGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
28180680 TGCGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
28180720 TGTGCG
1 TGTGCG
28180726 GGTTACCATA
Statistics
Matches: 107, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 93 0.87
40 14 0.13
ACGTcount: A:0.23, C:0.19, G:0.34, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:28188417 original size:38 final size:39
Alignment explanation
Indices: 28188296--28188457 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
28188286 TGTGTATGAA
*
28188296 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
28188335 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
28188374 GGTGCGAGCTATGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
28188412 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
28188452 TGTGCG
1 TGTGCG
28188458 GGTTACCATA
Statistics
Matches: 112, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
38 34 0.30
39 62 0.55
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:28188473 original size:78 final size:78
Alignment explanation
Indices: 28188313--28188488 Score: 246
Period size: 78 Copynumber: 2.2 Consensus size: 78
28188303 ATTGTGATAT
28188313 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTG
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTG
** *
28188378 CGAGCTATGATAT
66 CGAGCTACCATAA
* * *
28188391 CCGGGCTAAG-CCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAATGGT
* *
28188455 GCGGGTTACCATAA
65 GCGAGCTACCATAA
*
28188469 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAG-CCCGAAGGC
28188489 GTTTGAACGA
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
77 37 0.43
78 41 0.48
80 8 0.09
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTG
CGAGCTACCATAA
Found at i:28195548 original size:41 final size:38
Alignment explanation
Indices: 28195451--28195551 Score: 96
Period size: 37 Copynumber: 2.6 Consensus size: 38
28195441 AAAGCAATAT
* *
28195451 AGTGACACCTAGTGTCTCATCG-GCCTAGCCGAAGTAA
1 AGTGACACCCAGTGTCTCATCGAACCTAGCCGAAGTAA
** ** * *
28195488 AGTGGTACCCAGTACCTCATCGAATCTATCCGAAGTAA
1 AGTGACACCCAGTGTCTCATCGAACCTAGCCGAAGTAA
28195526 CAGTATGACACCCAGTGTCTCATCGA
1 -AG--TGACACCCAGTGTCTCATCGA
28195552 CTCGAGGCCG
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
37 17 0.35
38 12 0.25
39 2 0.04
41 17 0.35
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (38 bp):
AGTGACACCCAGTGTCTCATCGAACCTAGCCGAAGTAA
Found at i:28195806 original size:25 final size:25
Alignment explanation
Indices: 28195778--28195830 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
28195768 ATCACATACT
28195778 AAATCAATTCATTTCAATTATAAAA
1 AAATCAATTCATTTCAATTATAAAA
28195803 AAATCAATTCATTTCAATTATAAAA
1 AAATCAATTCATTTCAATTATAAAA
28195828 AAA
1 AAA
28195831 CACAATACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (25 bp):
AAATCAATTCATTTCAATTATAAAA
Found at i:28196669 original size:13 final size:13
Alignment explanation
Indices: 28196641--28196678 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
28196631 AAACTTTCAA
*
28196641 TTTTCCTTTTTT-
1 TTTTCTTTTTTTC
28196653 TTTTCTTTTTTTC
1 TTTTCTTTTTTTC
*
28196666 TTTTCTTTCTTTC
1 TTTTCTTTTTTTC
28196679 CTTCCCCTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTCTTTTTTTC
Found at i:28208274 original size:21 final size:21
Alignment explanation
Indices: 28208240--28208282 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
28208230 AATTGTCAAA
* *
28208240 ATAATTTTATAATATAATTAAC
1 ATAATTTTACAATA-AAATAAC
28208262 ATAA-TTTACAATAAAATAAC
1 ATAATTTTACAATAAAATAAC
28208282 A
1 A
28208283 ATATAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 8 0.42
22 4 0.21
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (21 bp):
ATAATTTTACAATAAAATAAC
Found at i:28208648 original size:20 final size:20
Alignment explanation
Indices: 28208623--28208660 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
28208613 GTTTATTCGC
*
28208623 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
28208643 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
28208661 TTTGGAGGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:28210351 original size:28 final size:28
Alignment explanation
Indices: 28210276--28210370 Score: 160
Period size: 27 Copynumber: 3.5 Consensus size: 28
28210266 GCGTAGATCA
28210276 CGAAATTACCCCTAAAGAG-AAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
28210303 CGAAATTA-CCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
28210330 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
28210358 CGATA-TACCCCTA
1 CGAAATTACCCCTA
28210371 GGGTTTTAAA
Statistics
Matches: 65, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
26 10 0.15
27 32 0.49
28 23 0.35
ACGTcount: A:0.45, C:0.25, G:0.11, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:28216624 original size:20 final size:20
Alignment explanation
Indices: 28216599--28216636 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
28216589 GTTTATTCGC
*
28216599 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
28216619 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
28216637 TTTGGAGGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:28218346 original size:27 final size:28
Alignment explanation
Indices: 28218252--28218347 Score: 160
Period size: 28 Copynumber: 3.5 Consensus size: 28
28218242 GCGTAGATCA
28218252 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
28218280 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
28218308 CAAAATTA-CCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
28218335 CGATA-TACCCCTA
1 CGAAATTACCCCTA
28218348 GGGTTTTAAA
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
26 2 0.03
27 27 0.42
28 35 0.55
ACGTcount: A:0.46, C:0.26, G:0.09, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:28221618 original size:40 final size:40
Alignment explanation
Indices: 28221559--28221745 Score: 239
Period size: 40 Copynumber: 4.7 Consensus size: 40
28221549 CAATTGAATG
* * *
28221559 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
28221599 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* **
28221639 ACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
28221679 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
28221719 ATATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
28221746 CGTCCATGTG
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 129 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:28221760 original size:40 final size:40
Alignment explanation
Indices: 28221559--28221766 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
28221549 CAATTGAATG
* * **
28221559 ATATCCGGGCTAAGTCCCGAAGACATTTGTGC-TAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAT-GTGGTT
* * **
28221599 ATATCCGGGTTAAGACCCGAAGGCAATTGTGC-TAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAT-GTGGTT
* * *
28221639 ACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCATGTGGTT
* * * *
28221679 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCATGTGGTT
* *
28221719 ATATCCGGGCTAAGACCCGAAGGCATTCGTCCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCATGTGGTT
28221759 ATATCCGG
1 ATATCCGG
28221767 TTGTAATCCG
Statistics
Matches: 145, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCATGTGGTT
Found at i:28223435 original size:13 final size:13
Alignment explanation
Indices: 28223404--28223428 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28223394 TAATCAAATA
28223404 ATTATAAACATAC
1 ATTATAAACATAC
28223417 ATTATAAACATA
1 ATTATAAACATA
28223429 TTGTATATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTATAAACATAC
Found at i:28227238 original size:20 final size:20
Alignment explanation
Indices: 28227152--28227238 Score: 102
Period size: 20 Copynumber: 4.3 Consensus size: 20
28227142 GGCTTGTCCA
*
28227152 CATTACTGGCAGTTTGTCTG
1 CATTACTGGCAGTTTATCTG
* * *
28227172 CTTTATTGGCAATTTATCTG
1 CATTACTGGCAGTTTATCTG
* * *
28227192 CATTATTGGCAGCTTACCTG
1 CATTACTGGCAGTTTATCTG
*
28227212 CACTACTGGCAGTTTATCTG
1 CATTACTGGCAGTTTATCTG
28227232 CATTACT
1 CATTACT
28227239 AGTGGCTTGA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (20 bp):
CATTACTGGCAGTTTATCTG
Found at i:28227259 original size:40 final size:40
Alignment explanation
Indices: 28227215--28227293 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 40
28227205 TTACCTGCAC
** *
28227215 TACTGGCAGTTTATCTGCATTACTAGTGGCTTGACCACAT
1 TACTGGCAACTTATCTGCAGTACTAGTGGCTTGACCACAT
* * * *
28227255 TACTGGTAACTTGTCTGCAGTACTGGTGGCTTGTCCACA
1 TACTGGCAACTTATCTGCAGTACTAGTGGCTTGACCACA
28227294 AATTAGAGTG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (40 bp):
TACTGGCAACTTATCTGCAGTACTAGTGGCTTGACCACAT
Found at i:28229505 original size:71 final size:71
Alignment explanation
Indices: 28229417--28229580 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
28229407 GAGATGTATC
28229417 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
28229482 AGGACA
66 AGGACA
*
28229488 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
28229553 CGGACA
66 AGGACA
28229559 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
28229581 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:28234975 original size:17 final size:17
Alignment explanation
Indices: 28234953--28234987 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
28234943 AGTGTTTCTT
28234953 AGTATTCGTGCAAGGTA
1 AGTATTCGTGCAAGGTA
28234970 AGTATTCGTGCAAGGTA
1 AGTATTCGTGCAAGGTA
28234987 A
1 A
28234988 TAGGGACGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.29
Consensus pattern (17 bp):
AGTATTCGTGCAAGGTA
Found at i:28236342 original size:22 final size:22
Alignment explanation
Indices: 28236314--28236356 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
28236304 AATACATATA
* *
28236314 AATGTTCGAACCGCGTGACTCT
1 AATGTTCAAACCACGTGACTCT
*
28236336 AATGTTCAAACCATGTGACTC
1 AATGTTCAAACCACGTGACTC
28236357 CAATATTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (22 bp):
AATGTTCAAACCACGTGACTCT
Found at i:28237876 original size:44 final size:44
Alignment explanation
Indices: 28237768--28237895 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 44
28237758 CTCATACAAT
* * * *
28237768 GCCAACGTCCCAGACGTGGTCTTACATGT-AATCACATATCGAT
1 GCCAACGTCCCAGACATGGTCTTACACGTAAATCACAAATCGAC
** * * *
28237811 GCCATTGTCCCAAACAGGGTCTTACACGTAAATCACAAATTGAC
1 GCCAACGTCCCAGACATGGTCTTACACGTAAATCACAAATCGAC
* * * *
28237855 GCCAACGTCCTAGACTTGGTCTTACAC-AAAATCACATATCG
1 GCCAACGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
28237896 GAATCCTATG
Statistics
Matches: 66, Mismatches: 18, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
43 34 0.52
44 32 0.48
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (44 bp):
GCCAACGTCCCAGACATGGTCTTACACGTAAATCACAAATCGAC
Found at i:28239909 original size:11 final size:11
Alignment explanation
Indices: 28239888--28239916 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
28239878 TATTAATGTG
28239888 AAAAT-AAAAT
1 AAAATAAAAAT
28239898 AAAATAAAAAT
1 AAAATAAAAAT
28239909 AAAATAAA
1 AAAATAAA
28239917 CGGCTTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:28244315 original size:6 final size:5
Alignment explanation
Indices: 28244289--28244320 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
28244279 CCAATTTGTG
28244289 AAAAT AAAAT AAAAT AAAAT AAAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT A
28244321 CACATAGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:28246204 original size:40 final size:40
Alignment explanation
Indices: 28246155--28246359 Score: 109
Period size: 39 Copynumber: 5.2 Consensus size: 40
28246145 CAGAGTTTAA
** *
28246155 CCGGATATAGCTA-CTCGTTCAAACGCCTTCGGGACATAGC
1 CCGGATATAG-TAGCTCGCACAAACGCCTTCGGGACATAAC
* * *
28246195 CCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAGCTCGCACAAACGCCTTCGGGACATAAC
* * ** * *
28246235 CCGGATATCA-CAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATAT-AGTAGCTCGCACAAACGCCTTCGGGACATAAC
* * ** * *
28246274 CCGGATATCA-CAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATAT-AGTAGCTCGCACAAACGCCTTCGGGACATAAC
* * ** * *
28246313 CCGGATATCA-CAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATAT-AGTAGCTCGCACAAACGCCTTCGGGACATAAC
28246352 CCGGATAT
1 CCGGATAT
28246360 TACCCGAACA
Statistics
Matches: 152, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 93 0.61
40 58 0.38
41 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAGCTCGCACAAACGCCTTCGGGACATAAC
Found at i:28246288 original size:39 final size:39
Alignment explanation
Indices: 28246208--28246359 Score: 277
Period size: 39 Copynumber: 3.9 Consensus size: 39
28246198 GTTATAGTAG
* *
28246208 CTCGCACAAATGCCTTCGGGACTTAACCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
28246248 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
28246287 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
28246326 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATAT
28246360 TACCCGAACA
Statistics
Matches: 110, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 91 0.83
40 19 0.17
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
Found at i:28253579 original size:29 final size:28
Alignment explanation
Indices: 28253537--28253615 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 28
28253527 TGCCGTGATT
*
28253537 TTTCCAGCATGCACACTTAGTGCCTTATA
1 TTTCCAGCA-GCACACTTAGTGCCATATA
28253566 TTTCCAGCACGCACACTTA--GCCATATA
1 TTTCCAGCA-GCACACTTAGTGCCATATA
28253593 TTTCCAGCAGCACACTTAGTGCC
1 TTTCCAGCAGCACACTTAGTGCC
28253616 GATCTCGTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
26 9 0.20
27 16 0.35
28 3 0.07
29 18 0.39
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (28 bp):
TTTCCAGCAGCACACTTAGTGCCATATA
Found at i:28254990 original size:24 final size:25
Alignment explanation
Indices: 28254959--28255005 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
28254949 TTATAACATG
* *
28254959 AAAATGACC-TTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
28254983 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
28255006 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:28255072 original size:20 final size:20
Alignment explanation
Indices: 28255049--28255106 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
28255039 TAAACATGGT
28255049 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
28255069 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
28255089 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
28255107 CTGTATTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:28255089 original size:11 final size:11
Alignment explanation
Indices: 28255053--28255106 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
28255043 CATGGTATGT
28255053 ATGATATGCAC
1 ATGATATGCAC
* *
28255064 ATGACATG--T
1 ATGATATGCAC
28255073 ATGATATGCAC
1 ATGATATGCAC
*
28255084 ATGATATG--T
1 ATGATATGCAC
28255093 ATGATATGCAC
1 ATGATATGCAC
28255104 ATG
1 ATG
28255107 CTGTATTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:28255199 original size:22 final size:23
Alignment explanation
Indices: 28255158--28255251 Score: 156
Period size: 22 Copynumber: 4.1 Consensus size: 23
28255148 GAGGAAGTGA
28255158 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
28255181 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
28255203 AAA-GGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
28255225 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
28255249 AAA
1 AAA
28255252 AGAGGCTAGG
Statistics
Matches: 67, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
21 8 0.12
22 23 0.34
23 18 0.27
24 18 0.27
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:28255239 original size:24 final size:24
Alignment explanation
Indices: 28255157--28255272 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
28255147 GGAGGAAGTG
28255157 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
28255181 -AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
28255203 -AAA-GGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
28255225 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
28255249 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
28255273 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
21 8 0.10
22 23 0.27
23 15 0.18
24 27 0.32
25 11 0.13
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:28255521 original size:30 final size:31
Alignment explanation
Indices: 28255466--28255528 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
28255456 CGTTTACAGT
28255466 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
28255497 AAAGGCTTCGGCCC-GTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
28255527 AA
1 AA
28255529 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 16 0.53
31 14 0.47
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:28263039 original size:25 final size:25
Alignment explanation
Indices: 28262992--28263039 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
28262982 TGATAACGTG
* * * *
28262992 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
28263017 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
28263040 GTTTATGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:28263104 original size:20 final size:20
Alignment explanation
Indices: 28263075--28263119 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
28263065 ATTTTGATAA
*
28263075 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
28263095 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
28263115 ACATG
1 ACATG
28263120 CTGTATTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:28263227 original size:24 final size:24
Alignment explanation
Indices: 28263171--28263265 Score: 113
Period size: 24 Copynumber: 4.0 Consensus size: 24
28263161 GAGGAAGTGA
*
28263171 AAAAGGGCTTATGCCCCAGTTCTT
1 AAAAGGGCTTATGCCCCAGTTATT
28263195 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
28263218 AAAAGGGCTTTTACCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
28263242 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
28263266 ATGATAAAGC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
23 22 0.37
24 28 0.47
25 10 0.17
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:28263435 original size:31 final size:31
Alignment explanation
Indices: 28263400--28263463 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
28263390 CGTTTATAGT
28263400 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
28263431 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
28263462 AA
1 AA
28263464 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:28264891 original size:28 final size:27
Alignment explanation
Indices: 28264841--28264899 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
28264831 ATTTTCATTT
*
28264841 ATTTCAAAATTTAACCACAAATTTACA
1 ATTTCAAAATTTAACCACAAATTAACA
* *
28264868 CATTTCACAATTTAATCC-CTAATTAACA
1 -ATTTCAAAATTTAA-CCACAAATTAACA
28264896 ATTT
1 ATTT
28264900 TACTAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 4 0.15
28 21 0.78
29 2 0.07
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.37
Consensus pattern (27 bp):
ATTTCAAAATTTAACCACAAATTAACA
Found at i:28265723 original size:39 final size:39
Alignment explanation
Indices: 28265680--28265813 Score: 207
Period size: 39 Copynumber: 3.4 Consensus size: 39
28265670 AGTTTTTGAG
*
28265680 TATTGTGATATATGCTTGGATGTTATGTGATTATATGAT
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAT
*
28265719 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAG
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAT
*
28265758 TATTGTGATATATGCTTGAACGTTATGTGATTATATG-T
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAT
* *
28265796 GTAATGTGATACATGCTT
1 -TATTGTGATATATGCTT
28265814 AAAAGTGAAT
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.27, C:0.04, G:0.22, T:0.46
Consensus pattern (39 bp):
TATTGTGATATATGCTTGAATGTTATGTGATTATATGAT
Found at i:28271104 original size:29 final size:28
Alignment explanation
Indices: 28271070--28271172 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
28271060 TAATCGTTCA
28271070 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATGT-ATTTAAGCT
* **
28271099 CGCACACATAGTGCCA-GATAGTCCAAGCT
1 CGCACACTTAGTGCCATG-TA-TTTAAGCT
**
28271128 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATGTATTT-AAGCT
*
28271157 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
28271173 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGTATTTAAGCT
Found at i:28279023 original size:46 final size:46
Alignment explanation
Indices: 28278903--28279026 Score: 176
Period size: 46 Copynumber: 2.7 Consensus size: 46
28278893 AACCCGCCCC
* * * * *
28278903 TAAGTGAACTCGGACTCAGCTCAATGAGCTCGAGCGGTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAACAGTCGCATCCA
* * *
28278949 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAACAGTCGCATCCA
28278995 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
28279027 GATGCTCAAC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGAACAGTCGCATCCA
Found at i:28284853 original size:46 final size:45
Alignment explanation
Indices: 28284803--28284973 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 45
28284793 TGACCATCCA
*
28284803 AACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTCCG
* *
28284849 AACTCGTTGAGTTGAGTCCGAGTTCA-TGA-GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G--TCCG
* *
28284896 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTCCG
* *
28284942 AGCTTGTTGAGTTGAGTCCGAGTTCACTTAGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
28284974 GGTGGGTTAC
Statistics
Matches: 107, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 57 0.53
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGTCCG
Found at i:28284956 original size:93 final size:93
Alignment explanation
Indices: 28284797--28284967 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
28284787 GATGGTTGAC
* **
28284797 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGTT
1 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGTT
28284862 GAGTCCGAGTTCATGAGATGTAACTAGG
66 GAGTCCGAGTTCATGAGATGTAACTAGG
* * * *
28284890 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGTT
1 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGTT
28284955 GAGTCCGAGTTCA
66 GAGTCCGAGTTCA
28284968 CTTAGGGGTG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCATGAGATGTAACTAGG
Found at i:28287928 original size:29 final size:28
Alignment explanation
Indices: 28287894--28287996 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
28287884 TAATCGATCA
*
28287894 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
* *
28287923 CGCACACATAGTGTCATATAATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
28287952 CGCACACTTAGTGCCA-TACATTTCAAGCT
1 CGCACACTTAGTGCCATTA-ATTT-AAGCT
*
28287981 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
28287997 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 59 0.91
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGCT
Found at i:28296017 original size:29 final size:29
Alignment explanation
Indices: 28295985--28296154 Score: 268
Period size: 29 Copynumber: 5.9 Consensus size: 29
28295975 AACATACATA
* ***
28295985 TTAAATTCGCACACTTAGTGCCATGCGAT
1 TTAAGTTCGCACACTTAGTGCCATATAAT
* *
28296014 TTAAGCTCGCACACATAGTGCCATATAAT
1 TTAAGTTCGCACACTTAGTGCCATATAAT
*
28296043 TTAAGTTTGCACACTTAGTGCCATATAAT
1 TTAAGTTCGCACACTTAGTGCCATATAAT
28296072 TTAAGTTCGCACACTTAGTGCCATATAAT
1 TTAAGTTCGCACACTTAGTGCCATATAAT
*
28296101 TTAAGTTCGCACACTTTGTGCCATATAAT
1 TTAAGTTCGCACACTTAGTGCCATATAAT
28296130 TTAAGTTCGCACACTTAGTGCCATA
1 TTAAGTTCGCACACTTAGTGCCATA
28296155 CCTTCCAAGC
Statistics
Matches: 129, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 129 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.34
Consensus pattern (29 bp):
TTAAGTTCGCACACTTAGTGCCATATAAT
Found at i:28296170 original size:58 final size:58
Alignment explanation
Indices: 28295992--28296181 Score: 229
Period size: 58 Copynumber: 3.3 Consensus size: 58
28295982 ATATTAAATT
*** * * * **
28295992 CGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTCAAGCC
* * **
28296050 TGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTCAAGCC
* **
28296108 CGCACACTTTGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATA-CCTTCCAAGCC
1 CGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATT-CAAGCC
28296166 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
28296182 ATCTTGTCAC
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
57 2 0.02
58 115 0.98
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (58 bp):
CGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTCAAGCC
Found at i:28296170 original size:87 final size:87
Alignment explanation
Indices: 28295992--28296181 Score: 256
Period size: 87 Copynumber: 2.2 Consensus size: 87
28295982 ATATTAAATT
* * *
28295992 CGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACAC
1 CGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACAC
* **
28296057 TTAGTGCCATATAATTTAAGTT
66 TTAGTGCCATATAATTCAAGCC
* * * *
28296079 CGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTTGTGCCATATAATTTAAGTTCGCACAC
1 CGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACAC
**
28296144 TTAGTGCCATA-CCTTCCAAGCC
66 TTAGTGCCATATAATT-CAAGCC
28296166 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
28296182 ATCTTGTCAC
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
86 2 0.02
87 88 0.98
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (87 bp):
CGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACAC
TTAGTGCCATATAATTCAAGCC
Found at i:28302758 original size:30 final size:30
Alignment explanation
Indices: 28302714--28302802 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
28302704 CAAAGATAAC
28302714 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
28302743 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
28302773 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
28302803 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:28302762 original size:15 final size:15
Alignment explanation
Indices: 28302714--28302793 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
28302704 CAAAGATAAC
*
28302714 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
28302728 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
28302743 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
28302758 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
28302773 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
28302788 AAGAAA
1 AAGAAA
28302794 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:28302802 original size:15 final size:15
Alignment explanation
Indices: 28302725--28302802 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
28302715 AGAAAACCGA
28302725 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
28302740 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
28302754 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
28302769 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
28302785 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
28302800 ATA
1 ATA
28302803 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:28307261 original size:42 final size:41
Alignment explanation
Indices: 28307196--28307338 Score: 171
Period size: 42 Copynumber: 3.4 Consensus size: 41
28307186 TAGGATACAA
28307196 ATCTGGGATATGGCATCATTATGAGATTTCGTGTAAGACCAT
1 ATCTGGGATATGGCATCA-TATGAGATTTCGTGTAAGACCAT
* *
28307238 ATCTGGAATATGGCATCGATATGAGATTTCGTGTAAGATCAT
1 ATCTGGGATATGGCATC-ATATGAGATTTCGTGTAAGACCAT
* * ** *
28307280 AGT-TGGGCTATTGGCATCAATACGAGATCCCATGTAAGACCAT
1 A-TCTGGGATA-TGGCATC-ATATGAGATTTCGTGTAAGACCAT
28307323 ATCTGGGATATGGCAT
1 ATCTGGGATATGGCAT
28307339 TGGTGTGGTA
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
42 51 0.59
43 35 0.41
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (41 bp):
ATCTGGGATATGGCATCATATGAGATTTCGTGTAAGACCAT
Found at i:28308037 original size:39 final size:40
Alignment explanation
Indices: 28307990--28308067 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 40
28307980 TCATTCAAAC
28307990 GCCGCTAAAGAACGAGCATTAGCGGCGC-TTTTTAAAAAG
1 GCCGCTAAAGAACGAGCATTAGCGGCGCTTTTTTAAAAAG
** **
28308029 GCCGCTAAAGATTGAGTTTTAGCGGCGCTTTTTTAAAAA
1 GCCGCTAAAGAACGAGCATTAGCGGCGCTTTTTTAAAAA
28308068 CGCCTCTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 24 0.71
40 10 0.29
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (40 bp):
GCCGCTAAAGAACGAGCATTAGCGGCGCTTTTTTAAAAAG
Found at i:28308800 original size:14 final size:14
Alignment explanation
Indices: 28308778--28308840 Score: 90
Period size: 14 Copynumber: 4.4 Consensus size: 14
28308768 ACTATTTTAA
28308778 GGTTTATGGATTAT
1 GGTTTATGGATTAT
*
28308792 GGATTATGGATTAT
1 GGTTTATGGATTAT
*
28308806 GGGTTTAGGGATTAT
1 -GGTTTATGGATTAT
*
28308821 GGTTTATGGTTTAT
1 GGTTTATGGATTAT
28308835 GGTTTA
1 GGTTTA
28308841 AGGGTTGGGG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
14 31 0.72
15 12 0.28
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.48
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:28308819 original size:22 final size:21
Alignment explanation
Indices: 28308781--28308833 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 21
28308771 ATTTTAAGGT
* *
28308781 TTATGGATTATGGATTATGGA
1 TTATGGTTTAGGGATTATGGA
*
28308802 TTATGGGTTTAGGGATTATGGT
1 TTAT-GGTTTAGGGATTATGGA
28308824 TTATGGTTTA
1 TTATGGTTTA
28308834 TGGTTTAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 10 0.36
22 18 0.64
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (21 bp):
TTATGGTTTAGGGATTATGGA
Found at i:28308837 original size:7 final size:7
Alignment explanation
Indices: 28308773--28308840 Score: 73
Period size: 7 Copynumber: 9.6 Consensus size: 7
28308763 GAGTTACTAT
*
28308773 TTTAAGG
1 TTTATGG
28308780 TTTATGG
1 TTTATGG
*
28308787 ATTATGG
1 TTTATGG
*
28308794 ATTATGG
1 TTTATGG
*
28308801 ATTATGGG
1 TTTAT-GG
*
28308809 TTTAGGG
1 TTTATGG
*
28308816 ATTATGG
1 TTTATGG
28308823 TTTATGG
1 TTTATGG
28308830 TTTATGG
1 TTTATGG
28308837 TTTA
1 TTTA
28308841 AGGGTTGGGG
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
7 48 0.91
8 5 0.09
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (7 bp):
TTTATGG
Found at i:28308844 original size:29 final size:29
Alignment explanation
Indices: 28308778--28308840 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
28308768 ACTATTTTAA
* * *
28308778 GGTTTATGGATTATGGATTATGGATTATG
1 GGTTTAGGGATTATGGTTTATGGTTTATG
28308807 GGTTTAGGGATTATGGTTTATGGTTTAT-
1 GGTTTAGGGATTATGGTTTATGGTTTATG
28308835 GGTTTA
1 GGTTTA
28308841 AGGGTTGGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 6 0.19
29 25 0.81
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.48
Consensus pattern (29 bp):
GGTTTAGGGATTATGGTTTATGGTTTATG
Found at i:28308852 original size:21 final size:21
Alignment explanation
Indices: 28308828--28308878 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
28308818 TATGGTTTAT
*
28308828 GGTTTATGGTTTA-AGGGTTGG
1 GGTTTAAGGTTTAGA-GGTTGG
28308849 GGTTTAAGGTTTAGAGGTTGG
1 GGTTTAAGGTTTAGAGGTTGG
*
28308870 GGGTTAAGG
1 GGTTTAAGG
28308879 GGATGGGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.37
Consensus pattern (21 bp):
GGTTTAAGGTTTAGAGGTTGG
Found at i:28308913 original size:14 final size:14
Alignment explanation
Indices: 28308894--28308936 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
28308884 GGATTATGAG
28308894 TTTAGGGTTTAAGA
1 TTTAGGGTTTAAGA
*
28308908 TTTAGGG-GTAGAGA
1 TTTAGGGTTTA-AGA
28308922 TTTAGGGTTT-AGA
1 TTTAGGGTTTAAGA
28308935 TT
1 TT
28308937 AATTAGGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 7 0.28
14 17 0.68
15 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.42
Consensus pattern (14 bp):
TTTAGGGTTTAAGA
Found at i:28309363 original size:44 final size:43
Alignment explanation
Indices: 28309291--28309375 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 43
28309281 GTCATGCCCG
* *
28309291 ACACTTAGCCATTTCCCTCAAAATCCCAAAACAAGTTTTCCCAA
1 ACACTTAGCCATTTCCCTCAAAACCCCAAAAC-AGATTTCCCAA
*
28309335 ACACTTAGCCATTTCCAGT-AAAACCCCAAAACAGATTTCCC
1 ACACTTAGCCATTTCC-CTCAAAACCCCAAAACAGATTTCCC
28309376 CAATTCTCTA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 8 0.22
44 28 0.76
45 1 0.03
ACGTcount: A:0.36, C:0.34, G:0.06, T:0.24
Consensus pattern (43 bp):
ACACTTAGCCATTTCCCTCAAAACCCCAAAACAGATTTCCCAA
Found at i:28309392 original size:18 final size:18
Alignment explanation
Indices: 28309369--28309412 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
28309359 CCCAAAACAG
* *
28309369 ATTTCCCC-AATTCTCTAT
1 ATTTCCCCTAA-TCCCTAA
28309387 ATTTCCCCTAATCCCTAA
1 ATTTCCCCTAATCCCTAA
28309405 ATTTCCCC
1 ATTTCCCC
28309413 CAAAATCACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.23, C:0.39, G:0.00, T:0.39
Consensus pattern (18 bp):
ATTTCCCCTAATCCCTAA
Found at i:28313287 original size:14 final size:14
Alignment explanation
Indices: 28313247--28313288 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
28313237 AATTGTGTTA
*
28313247 TTAAATT-ATTATT
1 TTAAATTCATTAAT
*
28313260 TTAAATTC-TAAAT
1 TTAAATTCATTAAT
28313273 TTAAATTCATTAAT
1 TTAAATTCATTAAT
28313287 TT
1 TT
28313289 TTGTATTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 18 0.75
14 6 0.25
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (14 bp):
TTAAATTCATTAAT
Found at i:28313356 original size:11 final size:11
Alignment explanation
Indices: 28313336--28313364 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
28313326 TTTAATTTGA
28313336 TAAT-GAATTT
1 TAATAGAATTT
28313346 TAATAGAATTT
1 TAATAGAATTT
28313357 TAATAGAA
1 TAATAGAA
28313365 AATTTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (11 bp):
TAATAGAATTT
Found at i:28313546 original size:43 final size:42
Alignment explanation
Indices: 28313487--28313617 Score: 149
Period size: 43 Copynumber: 3.1 Consensus size: 42
28313477 TAAAAATTTG
* *
28313487 ATGACCTTTAGCGGCGTTTATGGGAAAAGTGCCAG-TAAAGGTC
1 ATGA-CTTTAGCGGCGTTTGTGGGAAAAGCG-CAGCTAAAGGTC
* * *
28313530 ATGTTCTTTAGTGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTC
1 ATG-ACTTTAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTC
* *
28313573 ATGACATTTAGCGGCGTTTGTGGG-AATGCGCCGCTAAAGGTC
1 ATGAC-TTTAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTC
28313615 ATG
1 ATG
28313618 GGAAAAACGC
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
42 22 0.29
43 54 0.71
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (42 bp):
ATGACTTTAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTC
Found at i:28315633 original size:40 final size:39
Alignment explanation
Indices: 28315588--28315795 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
28315578 CGGAATACAA
*
28315588 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
28315628 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
28315668 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
28315708 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
28315748 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
28315788 CCGGATAT
1 CCGGATAT
28315796 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:28315735 original size:80 final size:81
Alignment explanation
Indices: 28315588--28315793 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
28315578 CGGAATACAA
* * * *
28315588 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
28315652 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
28315668 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
28315731 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
28315748 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
28315794 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:28326509 original size:39 final size:39
Alignment explanation
Indices: 28326422--28326599 Score: 248
Period size: 39 Copynumber: 4.5 Consensus size: 39
28326412 GCCACTAGCT
* * * *
28326422 CAAATGCCTTCGGGACTTAGCTCGGTTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TAAAATAACTCGCA
*
28326462 CAAATGCCTTCGGGACTTAGCCCGGTAAAATAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTAAAATAACTCGCA
* *
28326501 TAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTAAAATAACTCGCA
* * *
28326540 TAAATGCCTTTGGGACTTAGCCCGGTAAAATAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTAAAATAACTCGCA
*
28326579 CGAATGCCTTCGGGACTTAGC
1 CAAATGCCTTCGGGACTTAGC
28326600 TCAATTATCA
Statistics
Matches: 124, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 100 0.81
40 24 0.19
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTAAAATAACTCGCA
Found at i:28326520 original size:79 final size:78
Alignment explanation
Indices: 28326422--28326601 Score: 288
Period size: 78 Copynumber: 2.3 Consensus size: 78
28326412 GCCACTAGCT
* *
28326422 CAAATGCCTTCGGGACTTAGCTCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCTCGG-TATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
28326487 TAAAATAACTCGTA
65 TAAAATAACTCGTA
* * * *
28326501 TAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCATAAATGCCTTTGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGACTTAGCTCGGTATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
28326566 AAAATAACTCGTA
66 AAAATAACTCGTA
*
28326579 CGAATGCCTTCGGGACTTAGCTC
1 CAAATGCCTTCGGGACTTAGCTC
28326602 AATTATCAAT
Statistics
Matches: 92, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 69 0.75
79 23 0.25
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCTCGGTATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
AAAATAACTCGTA
Found at i:28327913 original size:17 final size:18
Alignment explanation
Indices: 28327877--28327914 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
28327867 GTTTTCATCA
*
28327877 TTTTCTTTCTCTCTTTTC
1 TTTTCTTTCTCTCATTTC
*
28327895 TTTTTTTTCTC-CATTTC
1 TTTTCTTTCTCTCATTTC
28327912 TTT
1 TTT
28327915 ATTACTAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTCTTTCTCTCATTTC
Found at i:28328543 original size:53 final size:54
Alignment explanation
Indices: 28328416--28328670 Score: 247
Period size: 55 Copynumber: 4.8 Consensus size: 54
28328406 ACACGGGTAC
* * * * *
28328416 CTTACCATTGCCATGACTTGTCATGGTATTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
28328465 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
28328518 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
28328573 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
28328626 CCTTACCAATTGCCATGCCTTGGCATGGTCATACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
28328671 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
49 36 0.21
50 1 0.01
52 2 0.01
53 49 0.29
54 10 0.06
55 70 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:28328607 original size:108 final size:110
Alignment explanation
Indices: 28328463--28328660 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
28328453 ATCCTTTTGA
* *
28328463 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
*
28328526 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCATACATGGGACCTTTGCCTTATAGT
* ** *
28328571 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
28328636 TGCCATGCCTTGGCATGGTCATACA
66 TGCCATGCCTTGGCATGGTCATACA
28328661 CGGTATCCTT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.60
109 7 0.09
110 24 0.30
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCATACATGGGACCTTTGCCTTATAGT
Found at i:28334629 original size:36 final size:36
Alignment explanation
Indices: 28334578--28334651 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
28334568 CAATGTTTGA
*
28334578 TTGAAACAAGTAAACAAAGTTTAACTGAAAGACTAT
1 TTGAAACAAGCAAACAAAGTTTAACTGAAAGACTAT
*
28334614 TTGAAACAAGCAAACAGAGTTTAACTGAAAGACTAT
1 TTGAAACAAGCAAACAAAGTTTAACTGAAAGACTAT
28334650 TT
1 TT
28334652 TTCAAATTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.26
Consensus pattern (36 bp):
TTGAAACAAGCAAACAAAGTTTAACTGAAAGACTAT
Found at i:28336588 original size:27 final size:27
Alignment explanation
Indices: 28336458--28336589 Score: 174
Period size: 27 Copynumber: 4.9 Consensus size: 27
28336448 ATTACCAAAG
* * **
28336458 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
**
28336485 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
28336512 TACCCTCAATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
28336539 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
28336566 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTACAGAATTACTA
28336590 AAATACCCTT
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:28336596 original size:27 final size:27
Alignment explanation
Indices: 28336428--28336721 Score: 171
Period size: 27 Copynumber: 10.9 Consensus size: 27
28336418 CCAATTATTG
* **
28336428 AAATACCCTCGACTTGTAAAATTACCA
1 AAATACCCTCGATTTACAAAATTACCA
* * * *
28336455 AAGTACCCCCGATTTACATAATTACCG
1 AAATACCCTCGATTTACAAAATTACCA
*** * *
28336482 TTTTACCCTCGATTTACAGAATTACCG
1 AAATACCCTCGATTTACAAAATTACCA
*** * * * *
28336509 TTTTACCCTCAATTTATAGAATTACTA
1 AAATACCCTCGATTTACAAAATTACCA
*** * * *
28336536 TTTTACCCTTGATTTACAGAATTACTA
1 AAATACCCTCGATTTACAAAATTACCA
*** *
28336563 TTTTACCCTCGATTTACAAAATTACTA
1 AAATACCCTCGATTTACAAAATTACCA
*
28336590 AAATACCCT-TAGTTTACAAAATTACCA
1 AAATACCCTCGA-TTTACAAAATTACCA
* **
28336617 AAATACCC-CTAGTTTGTAAAATTACCA
1 AAATACCCTCGA-TTTACAAAATTACCA
* ** *
28336644 AAATACCACT-GGTTTATGAAATTACCG
1 AAATACC-CTCGATTTACAAAATTACCA
* **
28336671 AAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTCGATTTACAAAATTACCA
*
28336698 AAATACCCTTGATTTACAAAATTA
1 AAATACCCTCGATTTACAAAATTA
28336722 TAGAAATACC
Statistics
Matches: 220, Mismatches: 42, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.01
27 216 0.98
28 1 0.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.34
Consensus pattern (27 bp):
AAATACCCTCGATTTACAAAATTACCA
Found at i:28336624 original size:81 final size:80
Alignment explanation
Indices: 28336427--28336717 Score: 244
Period size: 81 Copynumber: 3.6 Consensus size: 80
28336417 ACCAATTATT
* * * * ** *
28336427 GAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTACATAATTACCGTTTTACCCTC
1 GAAATACCCTCAATTTATAAAATTACCAAAATACCCTTGATTTACA-AATTACCATTTTACCCTC
*
28336492 GATTTACAGAATTACC
65 GATTTACAAAATTACC
*** * * *** *
28336508 GTTTTACCCTCAATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTTTACCCTC
1 GAAATACCCTCAATTTATAAAATTACCAAAATACCCTTGATTTACA-AATTACCATTTTACCCTC
*
28336573 GATTTACAAAATTACT
65 GATTTACAAAATTACC
* * * * * * ***
28336589 AAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTAGTTTGTA-AAATTACCAAAATACCAC
1 GAAATACCCTCAATTTATAAAATTACCAAAATA-CCCTTGATT-TACAAATTACCATTTTACC-C
* **
28336653 T-GGTTTATGAAATTACC
63 TCGATTTACAAAATTACC
*
28336670 GAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTACAAA
1 GAAATACCCTCAATTTATAAAATTACCAAAATACCCTTGATTTACAAA
28336718 ATTATAGAAA
Statistics
Matches: 159, Mismatches: 47, Indels: 9
0.74 0.22 0.04
Matches are distributed among these distances:
79 2 0.01
80 10 0.06
81 135 0.85
82 10 0.06
83 2 0.01
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (80 bp):
GAAATACCCTCAATTTATAAAATTACCAAAATACCCTTGATTTACAAATTACCATTTTACCCTCG
ATTTACAAAATTACC
Found at i:28336728 original size:27 final size:27
Alignment explanation
Indices: 28336539--28336778 Score: 159
Period size: 27 Copynumber: 8.8 Consensus size: 27
28336529 ATTACTATTT
* * ***
28336539 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACCAAAA
* *
28336566 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
28336593 TACCCTT-AGTTTACAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAA
* **
28336620 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAA
* ** *
28336647 TACCAC-TGGTTTATGAAATTACCGAAA
1 TACC-CTTGATTTACAAAATTACCAAAA
** **
28336674 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
*
28336701 TACCCTTGATTTACAAAATTA-TAGAAA
1 TACCCTTGATTTACAAAATTACCA-AAA
* *
28336728 TACCCTTAACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACCA-AAA
* *
28336757 TACCATTGGTTTACAAAATTAC
1 TACCCTTGATTTACAAAATTAC
28336779 TGAAATTTCC
Statistics
Matches: 174, Mismatches: 29, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
26 3 0.02
27 144 0.83
28 7 0.04
29 20 0.11
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.33
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCAAAA
Found at i:28336728 original size:54 final size:54
Alignment explanation
Indices: 28336485--28336778 Score: 211
Period size: 54 Copynumber: 5.4 Consensus size: 54
28336475 ATTACCGTTT
* * **** * ***
28336485 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACCAAAATACCCTCAATTTATAAAATTACTAAAA
* * *** * *
28336539 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCAAAATACCCTCAATTTATAAAATTACTAAAA
* * *
28336593 TACCCTT-AGTTTACAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAATACCCTC-AATTTATAAAATTACTAAAA
* ** * * *
28336647 TACCAC-TGGTTTATGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTTGATTTACAAAATTACCAAAATACCCTCAATTTATAAAATTACTAAAA
* * *
28336701 TACCCTTGATTTACAAAATTA-TAGAAATACCCTTAACTTTCTAAAAATTA-TAGAAA
1 TACCCTTGATTTACAAAATTACCA-AAATACCCTCAA-TTTAT-AAAATTACTA-AAA
* *
28336757 TACCATTGGTTTACAAAATTAC
1 TACCCTTGATTTACAAAATTAC
28336779 TGAAATTTCC
Statistics
Matches: 195, Mismatches: 34, Indels: 19
0.79 0.14 0.08
Matches are distributed among these distances:
53 3 0.02
54 156 0.80
55 7 0.04
56 29 0.15
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.34
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACCAAAATACCCTCAATTTATAAAATTACTAAAA
Found at i:28336798 original size:110 final size:109
Alignment explanation
Indices: 28336566--28336784 Score: 257
Period size: 108 Copynumber: 2.0 Consensus size: 109
28336556 ATTACTATTT
* ** * *
28336566 TACCCTCGATTTACAAAATTACTAAAATACCCTT-AGTTTACAAAATTACCAAAATACCCCTAGT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGAGTTTACAAAATTACCAAAATACCCCTACT
* **
28336630 TTGTAAAATTACCAAAATACCACTGGTTTATGAAATTACCGAAA
66 TTCTAAAATTACCAAAATACCACTGGTTTACAAAATTACCGAAA
* *
28336674 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGA-TTTACAAAATTA-TAGAAATACCCTTAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGAGTTTACAAAATTACCA-AAATACCCCT-A
* * *
28336737 CTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAA
64 CTTTCT-AAAATTACCA-AAATACCACTGGTTTACAAAATTACCGAAA
28336784 T
1 T
28336785 TTCCTTGGTT
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
107 1 0.01
108 51 0.55
109 7 0.08
110 34 0.37
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (109 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGAGTTTACAAAATTACCAAAATACCCCTACT
TTCTAAAATTACCAAAATACCACTGGTTTACAAAATTACCGAAA
Found at i:28336878 original size:27 final size:27
Alignment explanation
Indices: 28336848--28336908 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
28336838 TACCCTATTA
28336848 GGTAAAAAGACCGTAA-AGCCCCTGTAG
1 GGTAAAAAGACCGTAATA-CCCCTGTAG
** *
28336875 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAAAGACCGTAATACCCCTGTAG
28336902 GGTAAAA
1 GGTAAAA
28336909 TGATGAATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAAAGACCGTAATACCCCTGTAG
Found at i:28337922 original size:42 final size:42
Alignment explanation
Indices: 28337863--28337950 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
28337853 TAGTCTCCCC
*
28337863 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
28337905 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
28337947 AAAT
1 AAAT
28337951 CGACCTAAGG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:28340095 original size:40 final size:40
Alignment explanation
Indices: 28339987--28340196 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
28339977 CGGGATTTAA
* * * * *
28339987 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
28340027 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
28340067 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
28340107 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
28340147 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
28340187 CCGGATATAT
1 CCGGATATAT
28340197 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:28348232 original size:40 final size:40
Alignment explanation
Indices: 28348124--28348293 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
28348114 CGGGATTTAA
* * * * *
28348124 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
28348164 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
28348204 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
28348244 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
28348284 CCGGATATAT
1 CCGGATATAT
28348294 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:28357363 original size:40 final size:40
Alignment explanation
Indices: 28357318--28357447 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
28357308 CGGAATACAA
28357318 CCGGATATAACCACGT-GCACGAATTCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATTCCTTCGGGTCTTAGC
* ** * * *
28357358 CCGGATAGAATGACTCGTACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATTCCTTCGGGTCTTAGC
* * *
28357398 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAATT-CCTTCGGGTCTTAGC
28357438 CCGGATATAA
1 CCGGATATAA
28357448 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
39 4 0.06
40 68 0.94
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATTCCTTCGGGTCTTAGC
Found at i:28359795 original size:12 final size:13
Alignment explanation
Indices: 28359759--28359796 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
28359749 AAATATTTGA
28359759 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
28359772 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
28359786 CTTG-TCTTAAT
1 CTTGTTCTTAAT
28359797 ATTCCATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:28363503 original size:26 final size:26
Alignment explanation
Indices: 28363398--28363505 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
28363388 TGGTACAAAT
28363398 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
28363424 TAATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
28363450 TTATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
28363476 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
28363502 TGAT
1 TGAT
28363506 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:28365136 original size:27 final size:27
Alignment explanation
Indices: 28365096--28365254 Score: 130
Period size: 27 Copynumber: 5.9 Consensus size: 27
28365086 AGGAAATGTC
*
28365096 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
28365123 CTGGTGACTCTGCCGC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
28365149 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* * *
28365177 CTGGTGTCTCTGCTAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
28365204 GTAGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
28365231 ATGGTGACTTTGTCACAA-TATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
28365255 GCAGCCTCGC
Statistics
Matches: 105, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
26 11 0.10
27 90 0.86
28 4 0.04
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:28365174 original size:54 final size:54
Alignment explanation
Indices: 28365092--28365254 Score: 213
Period size: 54 Copynumber: 3.0 Consensus size: 54
28365082 ATGGAGGAAA
*
28365092 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCGCATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATC
* *
28365146 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGTCTCTGCTACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATC
** * * * * *
28365200 TGTTGTAGTGGCTCTGCCACAA-TATCTGTATATGGTGACTTTGTCACA-ATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATC
28365253 TG
1 TG
28365255 GCAGCCTCGC
Statistics
Matches: 96, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
53 13 0.14
54 83 0.86
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (54 bp):
TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATC
Found at i:28368346 original size:26 final size:26
Alignment explanation
Indices: 28368317--28368424 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
28368307 TGGTACAAAT
*
28368317 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
28368343 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
28368369 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
28368395 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
28368421 TGAT
1 TGAT
28368425 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:28370061 original size:27 final size:27
Alignment explanation
Indices: 28370021--28370165 Score: 170
Period size: 27 Copynumber: 5.2 Consensus size: 27
28370011 AGGAAGTGTC
* *
28370021 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
28370048 CTGGTGGCTCTGCCAC-ATATATCT-AT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
28370074 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
28370102 CTGGTGGCTCTGCCACATATATCTATCTGTT
1 CTGGTGGCTCTGCCAC--A-AT-TATCTGAT
28370133 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
28370160 CTGGTG
1 CTGGTG
28370166 ACTTTTATCA
Statistics
Matches: 104, Mismatches: 5, Indels: 18
0.82 0.04 0.14
Matches are distributed among these distances:
26 10 0.10
27 62 0.60
28 5 0.05
29 2 0.02
30 2 0.02
31 23 0.22
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:28370104 original size:54 final size:54
Alignment explanation
Indices: 28370019--28370165 Score: 224
Period size: 54 Copynumber: 2.6 Consensus size: 54
28370009 GGAGGAAGTG
*
28370019 TCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
28370073 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
*
28370127 TCTGTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 TC----CTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
28370166 ACTTTTATCA
Statistics
Matches: 86, Mismatches: 2, Indels: 6
0.91 0.02 0.06
Matches are distributed among these distances:
54 55 0.64
57 6 0.07
58 25 0.29
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
Found at i:28370662 original size:40 final size:40
Alignment explanation
Indices: 28370607--28370684 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
28370597 TTGGCCACTT
28370607 GTTTTATTTTATTAGTATTTGCTTTTGTCATCAAATACCA
1 GTTTTATTTTATTAGTATTTGCTTTTGTCATCAAATACCA
*
28370647 GTTTTATTTTATTAGTATTTTCTTTTGTCATCAAATAC
1 GTTTTATTTTATTAGTATTTGCTTTTGTCATCAAATAC
28370685 GAAACCATAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.55
Consensus pattern (40 bp):
GTTTTATTTTATTAGTATTTGCTTTTGTCATCAAATACCA
Found at i:28372090 original size:15 final size:15
Alignment explanation
Indices: 28372055--28372113 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
28372045 CAAAGATAAC
* *
28372055 AAGAAAACCAAG-CA
1 AAGAAATCCAAGATA
28372069 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
* *
28372084 GAGAAATCCAGGATA
1 AAGAAATCCAAGATA
*
28372099 AAGAAACCCAAGATA
1 AAGAAATCCAAGATA
28372114 CGATACTATA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
14 11 0.30
15 26 0.70
ACGTcount: A:0.58, C:0.17, G:0.17, T:0.08
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:28376670 original size:71 final size:71
Alignment explanation
Indices: 28376586--28376749 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
28376576 CGATTTGTCT
28376586 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
28376651 CTTTCA
66 CTTTCA
28376657 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
28376722 CTTTCA
66 CTTTCA
28376728 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
28376750 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:28376787 original size:71 final size:70
Alignment explanation
Indices: 28376586--28376783 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
28376576 CGATTTGTCT
* * * *
28376586 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
28376651 CTTTCA
65 CTTTCA
* * * *
28376657 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
28376722 CTTTCA
65 CTTTCA
* *
28376728 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
28376784 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:28383751 original size:71 final size:71
Alignment explanation
Indices: 28383667--28383830 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
28383657 CGATTTGTCT
28383667 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
28383732 CTTTCA
66 CTTTCA
28383738 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
28383803 CTTTCA
66 CTTTCA
28383809 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
28383831 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:28383868 original size:71 final size:70
Alignment explanation
Indices: 28383667--28383864 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
28383657 CGATTTGTCT
* * * *
28383667 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
28383732 CTTTCA
65 CTTTCA
* * * *
28383738 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
28383803 CTTTCA
65 CTTTCA
* *
28383809 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
28383865 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:28390627 original size:18 final size:18
Alignment explanation
Indices: 28390604--28390639 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
28390594 TGAATTTGGA
28390604 AAGCATCTCTTCAAGGTT
1 AAGCATCTCTTCAAGGTT
28390622 AAGCATCTCTTCAAGGTT
1 AAGCATCTCTTCAAGGTT
28390640 TGATTTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (18 bp):
AAGCATCTCTTCAAGGTT
Found at i:28394488 original size:40 final size:40
Alignment explanation
Indices: 28394443--28394610 Score: 180
Period size: 40 Copynumber: 4.2 Consensus size: 40
28394433 CGGAATACAA
* *
28394443 CCGGATATAACCACACGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * * *
28394483 CCGGATATAACGACTCGCACAAATGCCTTCGGCTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
28394523 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
28394563 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
28394603 CCGGATAT
1 CCGGATAT
28394611 CATTCAATTG
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
39 4 0.04
40 105 0.96
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:28394553 original size:80 final size:79
Alignment explanation
Indices: 28394443--28394610 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 79
28394433 CGGAATACAA
* * * *
28394443 CCGGATATAACCACACGCATGAATGCCTTCGGGTCTTAGCCCGGATATAA-CGACTCGCACAAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATA-AAGC-ACTAGCACAAAT
*
28394507 GCCTTCGGCTATTAGC
64 GCCTTCGGCTATTAAC
** *
28394523 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATAAAGTCACTAGCACAATTG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATAAAG-CACTAGCACAAATG
* *
28394588 CCTTCGGGTCTTAAC
65 CCTTCGGCTATTAAC
28394603 CCGGATAT
1 CCGGATAT
28394611 CATTCAATTG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
79 2 0.03
80 73 0.96
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATAAAGCACTAGCACAAATGC
CTTCGGCTATTAAC
Found at i:28396807 original size:22 final size:22
Alignment explanation
Indices: 28396782--28396828 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
28396772 TAAATTGAGC
28396782 ACGCATTTCATGAATTTCATGT
1 ACGCATTTCATGAATTTCATGT
28396804 ACGCATTTCATGAATTTCATGT
1 ACGCATTTCATGAATTTCATGT
28396826 ACG
1 ACG
28396829 TACCTGTACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (22 bp):
ACGCATTTCATGAATTTCATGT
Found at i:28397074 original size:50 final size:50
Alignment explanation
Indices: 28396949--28397286 Score: 327
Period size: 50 Copynumber: 6.9 Consensus size: 50
28396939 AGGGTAAGGT
* * *** * *
28396949 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACCCATCAAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATATCGAG
* * ** *
28396997 GTCGATGCTATGTGTCAGACATGGTCTTACATT-GACTCTCGTATATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTAG-CTCTCATATATCGAG
* * * * *
28397047 GCTGATGCCATGTCCTAGACACGGTCTTACATTAGCTCTCATCTATCGAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATATCGAG
* * *
28397097 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTATCG-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATATCGAG
* * ** *
28397146 TGCCAATGCCATATCCCAGACATGGTCTTAC---A-CTGACATATATC-AA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATATCGAG
* * * *
28397192 GCCGATGCCATGCCCCAGACATGGTCATACAGTAGCTCTCATATTTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATATCGAG
28397242 GCCGATGCCATGTCCCA-ACATGGTCTTACATTAGCTCTCATATAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATAT
28397287 ACCTAGCATC
Statistics
Matches: 235, Mismatches: 44, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
45 26 0.11
46 9 0.04
47 2 0.01
48 31 0.13
49 35 0.15
50 131 0.56
51 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATATCGAG
Found at i:28397697 original size:55 final size:55
Alignment explanation
Indices: 28397624--28397729 Score: 158
Period size: 55 Copynumber: 1.9 Consensus size: 55
28397614 TGCAACACTG
* *
28397624 ACTTTAAAACACAACCATGACATACGCCCGTGTGGCCTACCCGTGTACTAAATTA
1 ACTTTAAAACACAACCATGACACACGCCCGTGTGGCCTACCCATGTACTAAATTA
* ** *
28397679 ACTTTAAAATACGGCCATGACACACGCTCGTGTGGCCTACCCATGTACTAA
1 ACTTTAAAACACAACCATGACACACGCCCGTGTGGCCTACCCATGTACTAA
28397730 TCTGACTTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 45 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (55 bp):
ACTTTAAAACACAACCATGACACACGCCCGTGTGGCCTACCCATGTACTAAATTA
Found at i:28398763 original size:46 final size:45
Alignment explanation
Indices: 28398603--28398773 Score: 168
Period size: 48 Copynumber: 3.7 Consensus size: 45
28398593 TATACGTACT
* * * * * * *
28398603 GATGCATGTCCCGGACATGTCTTACACTAGCAT--GACTCTTAGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCATCATAATC-GAGGC
*
28398647 GATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGC
1 GATGCATGTCCCAGACACGTCTTACACTGGC-ATCATAATCGAGGC
* * *
28398693 TGATGCCATGTCCCAGAAAAGTCTTACACTGGCACTCATAAT-GTGGTC
1 -GATG-CATGTCCCAGACACGTCTTACACTGGCA-TCATAATCGAGG-C
28398741 GATGCATGTCCCAGACACGTCTTACACTGGCAT
1 GATGCATGTCCCAGACACGTCTTACACTGGCAT
28398774 ACAAGAAATC
Statistics
Matches: 106, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
44 28 0.26
45 3 0.03
46 29 0.27
47 14 0.13
48 32 0.30
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (45 bp):
GATGCATGTCCCAGACACGTCTTACACTGGCATCATAATCGAGGC
Done.