Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 105 of 292
Found at i:32134887 original size:27 final size:27
Alignment explanation
Indices: 32134856--32135076 Score: 271
Period size: 27 Copynumber: 8.2 Consensus size: 27
32134846 AACACTCTAG
32134856 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
* *
32134883 AGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
* * *
32134910 GGGTACAATAGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
* *
32134937 GGGTAAAATGGTAATTCTATAAATCAA
1 GGGTAAAATGGTAATTTTATAAATCGA
*** *
32134964 GGGTAAAACAATAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
*
32134991 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
* *
32135018 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
*** * *
32135045 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
32135072 GGGTA
1 GGGTA
32135077 TTTCAGTAAT
Statistics
Matches: 163, Mismatches: 31, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 163 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (27 bp):
GGGTAAAATGGTAATTTTATAAATCGA
Found at i:32139454 original size:6 final size:7
Alignment explanation
Indices: 32139423--32139466 Score: 67
Period size: 7 Copynumber: 6.7 Consensus size: 7
32139413 TGAAACCAAC
32139423 CATTTCT
1 CATTTCT
32139430 CATTTCT
1 CATTTCT
32139437 CATTTCT
1 CATTTCT
32139444 CATTT-T
1 CATTTCT
32139450 CATTTC-
1 CATTTCT
32139456 CATTTC-
1 CATTTCT
32139462 CATTT
1 CATTT
32139467 AATTTTTGAG
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.47
7 19 0.53
ACGTcount: A:0.16, C:0.27, G:0.00, T:0.57
Consensus pattern (7 bp):
CATTTCT
Found at i:32142733 original size:40 final size:40
Alignment explanation
Indices: 32142674--32142821 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 40
32142664 CATTGGAATG
* *
32142674 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAATAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAATAATT
* * **
32142714 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAATAATT
* **
32142754 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-ACCA--
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAATAATT
* *
32142791 A-ATCCGGGTTAAGACCCGAAGGCAATCGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
32142822 AAATCACTAT
Statistics
Matches: 91, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
36 27 0.30
37 1 0.01
39 3 0.03
40 58 0.64
41 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAATAATT
Found at i:32142776 original size:80 final size:76
Alignment explanation
Indices: 32142674--32142821 Score: 197
Period size: 80 Copynumber: 1.9 Consensus size: 76
32142664 CATTGGAATG
* *
32142674 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAATAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCT-ACAA--A-ATCCGGGCTAAGACCCGAAGGCA
*
32142739 TTCGTGCGAGTTGTT
62 ATCGTGCGAGTTGTT
* * * *
32142754 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTACAAAATCCGGGCTAAGACCCGAAGGCAATCG
32142819 TGC
66 TGC
32142822 AAATCACTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
76 28 0.46
77 1 0.02
79 2 0.03
80 30 0.49
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.23
Consensus pattern (76 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTACAAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAGTTGTT
Found at i:32143526 original size:13 final size:13
Alignment explanation
Indices: 32143508--32143537 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
32143498 GGAGACTTTA
32143508 ACTAATAAACTGT
1 ACTAATAAACTGT
32143521 ACTAATAAACTGT
1 ACTAATAAACTGT
32143534 ACTA
1 ACTA
32143538 GTTTCAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.17, G:0.07, T:0.30
Consensus pattern (13 bp):
ACTAATAAACTGT
Found at i:32150695 original size:38 final size:38
Alignment explanation
Indices: 32150564--32150711 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
32150554 AATTGAATGA
* * * *
32150564 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
32150603 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
32150641 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
32150681 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
32150712 ACGGATTATA
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:32158646 original size:40 final size:40
Alignment explanation
Indices: 32158554--32158703 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
32158544 AATTGAATGA
* * * *
32158554 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAAT-T
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
32158593 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
32158634 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
32158673 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
32158704 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 31 0.34
40 54 0.59
41 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:32158717 original size:40 final size:40
Alignment explanation
Indices: 32158593--32158719 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
32158583 GCTGGAAATT
* * * * *
32158593 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
32158633 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
32158673 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
32158713 TATCCGG
1 TATCCGG
32158720 TTATATTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:32168895 original size:35 final size:35
Alignment explanation
Indices: 32168849--32168918 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
32168839 AATTTTCAGT
32168849 TTTCCCATTTTTCCAATAAAGGCCACCAACTTGCG
1 TTTCCCATTTTTCCAATAAAGGCCACCAACTTGCG
32168884 TTTCCCATTTTTCCAATAAAGGCCACCAACTTGCG
1 TTTCCCATTTTTCCAATAAAGGCCACCAACTTGCG
32168919 ATATCTTTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.31
Consensus pattern (35 bp):
TTTCCCATTTTTCCAATAAAGGCCACCAACTTGCG
Found at i:32170092 original size:27 final size:27
Alignment explanation
Indices: 32170062--32170180 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
32170052 ATTACTGAAA
** *
32170062 TACCCTCGATTTGTAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * **
32170089 TACCTTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
32170116 TACCCTCGTTTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
32170143 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
32170170 TACCCTCGATT
1 TACCCTCGATT
32170181 GTGAAATTAC
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:32170242 original size:27 final size:27
Alignment explanation
Indices: 32170212--32170341 Score: 140
Period size: 27 Copynumber: 4.9 Consensus size: 27
32170202 TGTAGGATAG
*
32170212 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
32170239 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
** ** *
32170266 AATTA-CAGAAATACCATTGGTTTGTGA
1 AATTACCA-AAATACCCCTAATTTGTAA
*
32170293 AATTACCGAAATA-CCCTCAATTTG-AA
1 AATTACCAAAATACCCCT-AATTTGTAA
* *
32170319 AATTGCCAAAATACCCCTGATTT
1 AATTACCAAAATACCCCTAATTT
32170342 ACAAAACTAT
Statistics
Matches: 84, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
26 20 0.24
27 63 0.75
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:32170270 original size:54 final size:53
Alignment explanation
Indices: 32170212--32170336 Score: 155
Period size: 54 Copynumber: 2.3 Consensus size: 53
32170202 TGTAGGATAG
32170212 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTC-AATTTG-AA
** * * *
32170266 AATTA-CAGAAATACCATTGGTTTGTGAAATTACCGAAATACCCTCAATTTGAA
1 AATTACCA-AAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGAA
*
32170319 AATTGCCAAAATACCCCT
1 AATTACCAAAATACCCCT
32170337 GATTTACAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
53 16 0.27
54 43 0.72
55 1 0.02
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (53 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGAA
Found at i:32170356 original size:80 final size:81
Alignment explanation
Indices: 32170212--32170360 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 81
32170202 TGTAGGATAG
* ** *
32170212 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACAGAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAACTACAGAAA
32170277 TACCATTGGTTTGTGA
66 TACCATTGGTTTGTGA
* * * *
32170293 AATTACCGAAATA-CCCTCAATTTG-AAAATTGCCAAAATACCCCTGATTTACAAAACTATAGAA
1 AATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTAATTTACAAAACTACAGAA
32170356 ATACC
65 ATACC
32170361 CTTAACTTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
80 42 0.71
81 17 0.29
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAACTACAGAAA
TACCATTGGTTTGTGA
Found at i:32170412 original size:27 final size:27
Alignment explanation
Indices: 32170373--32170424 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
32170363 TAACTTTCTA
*
32170373 AAAATTATAGAAATATCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
32170400 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
32170425 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:32170542 original size:27 final size:27
Alignment explanation
Indices: 32170465--32170542 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
32170455 AAATGACTAA
*
32170465 AATACCCTTA-ATAGGTAAAAAGACCGT
1 AATACCCTTATAT-GGTAAAATGACCGT
* * *
32170492 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCTTATATGGTAAAATGACCGT
32170519 AATACCCTTATATGGTAAAATGAC
1 AATACCCTTATATGGTAAAATGAC
32170543 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.02
27 38 0.93
28 2 0.05
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (27 bp):
AATACCCTTATATGGTAAAATGACCGT
Found at i:32171390 original size:25 final size:25
Alignment explanation
Indices: 32171350--32171421 Score: 108
Period size: 25 Copynumber: 2.9 Consensus size: 25
32171340 GGAGGAAGTG
*
32171350 CAAAAAGGGCTATGCCCCAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTTAC
* *
32171375 CGAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTTAC
*
32171400 CAAAAAGGGCTTTTCCCCAGTT
1 CAAAAAGGGCTTTGCCCCAGTT
32171422 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:32171434 original size:24 final size:24
Alignment explanation
Indices: 32171377--32171448 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
32171367 CAGTTTACCG
*
32171377 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTTCCCCAG-TTATC
*
32171401 AAAA-AGGGCTTTTCCCCAGTTATT
1 AAAAGA-GGCTTTTCCCCAGTTATC
**
32171425 AAAAGAGGCTAGTCCTCCAGTTAT
1 AAAAGAGGCTTTTCC-CCAGTTAT
32171449 ATGATAAAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 19 0.47
25 21 0.52
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (24 bp):
AAAAGAGGCTTTTCCCCAGTTATC
Found at i:32171748 original size:33 final size:29
Alignment explanation
Indices: 32171673--32171750 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
32171663 TGATTTATGA
* *
32171673 AAAGGCTCTGGCCCAGTAACTGTTAAACG
1 AAAGGCTTTGGCCCAGTAAATGTTAAACG
* *
32171702 AAAGGCTTCGGCCCAGTAAATGTATAGACTG
1 AAAGGCTTTGGCCCAGTAAATGT-TAAAC-G
32171733 AATAGGGCTTTGGCCCAG
1 AA-A-GGCTTTGGCCCAG
32171751 ATTGTACTGA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 20 0.50
30 4 0.10
31 3 0.08
32 1 0.03
33 12 0.30
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (29 bp):
AAAGGCTTTGGCCCAGTAAATGTTAAACG
Found at i:32173984 original size:27 final size:27
Alignment explanation
Indices: 32173954--32174010 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
32173944 TAAACATAGA
* *
32173954 GTAGTTCATCGAGACTGTAAACACGGG
1 GTAGTTCACCGAGACAGTAAACACGGG
* * *
32173981 GTAGTTTACCGGGACAGTAAACATGGG
1 GTAGTTCACCGAGACAGTAAACACGGG
32174008 GTA
1 GTA
32174011 ATCTACTGGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.16, G:0.32, T:0.23
Consensus pattern (27 bp):
GTAGTTCACCGAGACAGTAAACACGGG
Found at i:32174024 original size:27 final size:27
Alignment explanation
Indices: 32173970--32174032 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
32173960 CATCGAGACT
* * *
32173970 GTAAACACGGGGTAGTTTACCGGGACA
1 GTAAACACGGGGTAATCTACCGGAACA
* *
32173997 GTAAACATGGGGTAATCTACTGGAACA
1 GTAAACACGGGGTAATCTACCGGAACA
32174024 GTAAACACG
1 GTAAACACG
32174033 ATGTAGTCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (27 bp):
GTAAACACGGGGTAATCTACCGGAACA
Found at i:32177724 original size:228 final size:228
Alignment explanation
Indices: 32177403--32177853 Score: 681
Period size: 228 Copynumber: 2.0 Consensus size: 228
32177393 CACAAGCCCC
* * *
32177403 TGTCCTTTCACACGGCTTCAACAAGCCCGTGGCGCAACCCGTGTGCAAAAACCTAAGTATTCTAT
1 TGTCCTTTCACACGGCCTCAACAAGCCCGTGGCACAACCCGTGTGCAAAAACCTAAGTATTATAT
* * *
32177468 TTCTAACGTCAGCATCACACGACCATGGTACACGCCCGTGTACTAGGCCGTGCCCT-TCACACGG
66 TTCTAACGACAGCATCACACGACCATGGTACACGCCCGTGTACTAGGACGTGCCCTCT-ACACGA
* * *
32177532 CTGAGACACACAACT-GTGTCTCTACCTGTGTGATCCTTACCATGCATTTTGACTTGAAATTTCT
130 CTAAGACACAC-ACTCGTGTCTCCACCTGTGTGATCCTTACCATGCATTCTGACTTGAAATTTCT
32177596 AGGTGCAGGGGACACACGACCTTCTCACACACCCG
194 AGGTGCAGGGGACACACGACCTTCTCACACACCCG
* ** *
32177631 TGTCCTTTCACACGGCCTCAACACGCCCGTGGCACAACCCGTGTGCAAAAACCTGGGTATTATGT
1 TGTCCTTTCACACGGCCTCAACAAGCCCGTGGCACAACCCGTGTGCAAAAACCTAAGTATTATAT
* * **
32177696 TTCTAACGACAGCATCACACGTCCATGGTACATGCTTGTGTACTAGGACGTGCCCTCTACACGAC
66 TTCTAACGACAGCATCACACGACCATGGTACACGCCCGTGTACTAGGACGTGCCCTCTACACGAC
** *
32177761 TAAGACACACGGTCGTGTCTCCACTTGTGTGATCCTTACCATGCATTCTGACTTGAAATTTCTAG
131 TAAGACACACACTCGTGTCTCCACCTGTGTGATCCTTACCATGCATTCTGACTTGAAATTTCTAG
*
32177826 GTGCAGGGGACACACGGCCTTCTCACAC
196 GTGCAGGGGACACACGACCTTCTCACAC
32177854 GCTCATGGGG
Statistics
Matches: 200, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
227 1 0.00
228 198 0.99
229 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (228 bp):
TGTCCTTTCACACGGCCTCAACAAGCCCGTGGCACAACCCGTGTGCAAAAACCTAAGTATTATAT
TTCTAACGACAGCATCACACGACCATGGTACACGCCCGTGTACTAGGACGTGCCCTCTACACGAC
TAAGACACACACTCGTGTCTCCACCTGTGTGATCCTTACCATGCATTCTGACTTGAAATTTCTAG
GTGCAGGGGACACACGACCTTCTCACACACCCG
Found at i:32178769 original size:47 final size:46
Alignment explanation
Indices: 32178567--32178904 Score: 240
Period size: 47 Copynumber: 7.2 Consensus size: 46
32178557 AGGATAAGTT
** *
32178567 GCCGATGCCATGTCCCAGGCATGATCTTACACTGGCTA-TTATCATCGAG
1 GCCGATG-CATGTCCCAAACATG-TCTTACACTGGC-ACTCATC-TCGAG
* * * * * *
32178616 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTATATACG-T
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCACTC--ATCT-CGAG
* * * * * *
32178666 GCTGATGCATGTCCCAGACATGTCTTACACT--AACACAACTCTTA-
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCACTCATCTC-GAG
* *
32178710 GCCGATGCATGTCCCAAACACGTCTTACATTGGCTAC-CATCGTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGC-ACTCATC-TCGAG
* * *
32178757 GCCGATGCATGTCCCAAACATGTCTTACACTAGCACTCATCTCTAC
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCACTCATCTCGAG
* * *
32178803 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-GTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCACTCAT-CTCGAG
* * * * *
32178851 GTCGATGCATGTCCCAGACATGTCTTACACTGGCACTTATCTCTAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCACTCATCTCGAG
32178897 GCCGATGC
1 GCCGATGC
32178905 CTTACACTGG
Statistics
Matches: 232, Mismatches: 40, Indels: 37
0.75 0.13 0.12
Matches are distributed among these distances:
43 1 0.00
44 29 0.12
45 1 0.00
46 43 0.19
47 66 0.28
48 33 0.14
49 47 0.20
50 8 0.03
51 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCACTCATCTCGAG
Found at i:32178857 original size:141 final size:140
Alignment explanation
Indices: 32178567--32178884 Score: 338
Period size: 141 Copynumber: 2.2 Consensus size: 140
32178557 AGGATAAGTT
** * **
32178567 GCCGATGCCATGTCCCAGGCATGATCTTACACTGGCTATTATCATCGAGGCCGATGCCATGTCCC
1 GCCGATG-CATGTCCCAAACACG-TCTTACACTGGCTACCATCATCGAGGCCGATGCCATGTCCC
* * * * *
32178632 AGACATGGTCTTATACTAGCTCTCGTATATACGTGCTGATGCATGTCCCAGACATGTCTTACACT
64 AAACATGGTCTTACACTAGCACTCATATATACG-GCCGATGCATGTCCCAGACATGTCTTACACT
* *
32178697 AACACAACTCTTA
128 AACACAAATCGTA
* *
32178710 GCCGATGCATGTCCCAAACACGTCTTACATTGGCTACCATCGTCGAGGCCGATG-CATGTCCCAA
1 GCCGATGCATGTCCCAAACACGTCTTACACTGGCTACCATCATCGAGGCCGATGCCATGTCCCAA
* *
32178774 ACAT-GTCTTACACTAGCACTCATCTCTAC-GCCGATGCCATGTCCCAGACATGGTCTTACACTG
66 ACATGGTCTTACACTAGCACTCATATATACGGCCGATG-CATGTCCCAGACAT-GTCTTACACT-
* * *
32178837 GCACTCATAAT-GTG
128 -AACACA-AATCGTA
* * *
32178851 GTCGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAAACACGTCTTACACTGGC
32178885 ACTTATCTCT
Statistics
Matches: 147, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
137 6 0.04
138 14 0.10
139 30 0.20
140 13 0.09
141 63 0.43
142 14 0.10
143 7 0.05
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (140 bp):
GCCGATGCATGTCCCAAACACGTCTTACACTGGCTACCATCATCGAGGCCGATGCCATGTCCCAA
ACATGGTCTTACACTAGCACTCATATATACGGCCGATGCATGTCCCAGACATGTCTTACACTAAC
ACAAATCGTA
Found at i:32178863 original size:94 final size:93
Alignment explanation
Indices: 32178569--32178905 Score: 319
Period size: 94 Copynumber: 3.6 Consensus size: 93
32178559 GATAAGTTGC
* * * *
32178569 CGATGCCATGTCCCAGGCATGATCTTACACTGGCTA-TTATCATCGAGGCCGATGCCATGTCCCA
1 CGATG-CATGTCCCAGACATG-TCTTACACTAGC-ACTCATC-TCTA-GCCGATGCCATGTCCCA
* * * * *
32178633 GACATGGTCTTATACTAGCTCTCGTATATACGTGCT
61 GACATGGTCTTACACTGGCACTC--ATA-ATGTGGT
* * *
32178669 -GATGCATGTCCCAGACATGTCTTACACTA--ACACAACTCTTAGCCGATG-CATGTCCCAAACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTC-TAGCCGATGCCATGTCCCAGACA
* * ** * *
32178730 -CGTCTTACATTGGCTAC-CATCGTCGAGGC
65 TGGTCTTACACTGGC-ACTCATAAT-GTGGT
*
32178759 CGATGCATGTCCCAAACATGTCTTACACTAGCACTCATCTCTACGCCGATGCCATGTCCCAGACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTA-GCCGATGCCATGTCCCAGACA
32178824 TGGTCTTACACTGGCACTCATAATGTGGT
65 TGGTCTTACACTGGCACTCATAATGTGGT
* *
32178853 CGATGCATGTCCCAGACATGTCTTACACTGGCACTTATCTCTATGCCGATGCC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTA-GCCGATGCC
32178906 TTACACTGGC
Statistics
Matches: 194, Mismatches: 32, Indels: 28
0.76 0.13 0.11
Matches are distributed among these distances:
90 4 0.02
91 28 0.14
92 13 0.07
93 27 0.14
94 76 0.39
95 19 0.10
97 9 0.05
98 14 0.07
99 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (93 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTAGCCGATGCCATGTCCCAGACAT
GGTCTTACACTGGCACTCATAATGTGGT
Found at i:32178978 original size:47 final size:46
Alignment explanation
Indices: 32178905--32179104 Score: 212
Period size: 47 Copynumber: 4.3 Consensus size: 46
32178895 ATGCCGATGC
*
32178905 CTTACACTGGCACTCATAAT-GTGGCCGATGCATGTCCCAGACATGT
1 CTTACACTGGCACTCAT-CTCGTGGCCGATGCATGTCCCAGACATGT
* * *
32178951 CTTACACGGGCTA-TCATCGTCGTGGCCGATACATGTCCCAGAGATGT
1 CTTACACTGGC-ACTCATC-TCGTGGCCGATGCATGTCCCAGACATGT
* * *
32178998 CTTACACTAGCACTTATCTC-TACGCCGATGCCATGTCCCAGACATTGT
1 CTTACACTGGCACTCATCTCGT-GGCCGATG-CATGTCCCAGACA-TGT
* *
32179046 CTTACACTGGCACTCATAAT-GTGG-CAATTGCATGTCCCAGACATGT
1 CTTACACTGGCACTCAT-CTCGTGGCCGA-TGCATGTCCCAGACATGT
32179092 CTTACACTGGCAC
1 CTTACACTGGCAC
32179105 ATAAGTAATC
Statistics
Matches: 129, Mismatches: 15, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
45 1 0.01
46 40 0.31
47 65 0.50
48 21 0.16
49 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
CTTACACTGGCACTCATCTCGTGGCCGATGCATGTCCCAGACATGT
Found at i:32179001 original size:124 final size:125
Alignment explanation
Indices: 32178803--32179029 Score: 343
Period size: 124 Copynumber: 1.8 Consensus size: 125
32178793 TCATCTCTAC
* * *
32178803 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGTCGATGCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACGGGCACTCATAATGTGGCCGATACATGTCCCAG
* *
32178868 ACATGTCTTACACTGGCACTTATCTCTATGCCGATGCCTTACACTGGCACTCATAATGTG
66 ACATGTCTTACACTAGCACTTATCTCTACGCCGATGCCTTACACTGGCACTCATAATGTG
**
32178928 GCCGATG-CATGTCCCAGACAT-GTCTTACACGGGCTA-TCATCGTCGTGGCCGATACATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACGGGC-ACTCATAAT-GTGGCCGATACATGTCCC
*
32178990 AGAGATGTCTTACACTAGCACTTATCTCTACGCCGATGCC
64 AGACATGTCTTACACTAGCACTTATCTCTACGCCGATGCC
32179030 ATGTCCCAGA
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
123 17 0.18
124 68 0.74
125 7 0.08
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (125 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACGGGCACTCATAATGTGGCCGATACATGTCCCAG
ACATGTCTTACACTAGCACTTATCTCTACGCCGATGCCTTACACTGGCACTCATAATGTG
Found at i:32179080 original size:94 final size:93
Alignment explanation
Indices: 32178928--32179104 Score: 234
Period size: 94 Copynumber: 1.9 Consensus size: 93
32178918 TCATAATGTG
** *
32178928 GCCGATGCATGTCCCAGACATGTCTTACACGGGCTATCATCGTCGTGGCCGATACATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACGGGCTATCATAATCGTGGCCAATACATGTCCCAGA
*
32178993 GATGTCTTACACTAGCACTTATCTCTAC
66 CATGTCTTACACTAGCACTTATCTCTAC
* *
32179021 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGC-ACTCATAAT-GTGG-CAATTGCATGTCC
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACGGGCTA-TCATAATCGTGGCCAA-TACATGTCC
*
32179083 CAGACATGTCTTACACTGGCAC
62 CAGACATGTCTTACACTAGCAC
32179105 ATAAGTAATC
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
93 9 0.12
94 46 0.63
95 18 0.25
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (93 bp):
GCCGATGCATGTCCCAGACATGTCTTACACGGGCTATCATAATCGTGGCCAATACATGTCCCAGA
CATGTCTTACACTAGCACTTATCTCTAC
Found at i:32179088 original size:218 final size:218
Alignment explanation
Indices: 32178710--32179104 Score: 666
Period size: 218 Copynumber: 1.8 Consensus size: 218
32178700 ACAACTCTTA
** *
32178710 GCCGATGCATGTCCCAAACACGTCTTACATTGGCTACCATCGTCGAGGCCGATGCATGTCCCAAA
1 GCCGATGCATGTCCCAAACACGTCTTACACGGGCTACCATCGTCGAGGCCGATACATGTCCCAAA
32178775 CATGTCTTACACTAGCACTCATCTCTACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
66 CATGTCTTACACTAGCACTCATCTCTACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
*
32178840 CTCATAATGTGGTCGATGCATGTCCCAGACATGTCTTACACTGGCACTTATCTCTATGCCGATGC
131 CTCATAATGTGGTCAATGCATGTCCCAGACATGTCTTACACTGGCACTTATCTCTATGCCGATGC
32178905 CTTACACTGGCACTCATAATGTG
196 CTTACACTGGCACTCATAATGTG
* * * * *
32178928 GCCGATGCATGTCCCAGACATGTCTTACACGGGCTATCATCGTCGTGGCCGATACATGTCCCAGA
1 GCCGATGCATGTCCCAAACACGTCTTACACGGGCTACCATCGTCGAGGCCGATACATGTCCCAAA
* * *
32178993 GATGTCTTACACTAGCACTTATCTCTACGCCGATGCCATGTCCCAGACATTGTCTTACACTGGCA
66 CATGTCTTACACTAGCACTCATCTCTACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
32179058 CTCATAATGTGG-CAATTGCATGTCCCAGACATGTCTTACACTGGCAC
131 CTCATAATGTGGTCAA-TGCATGTCCCAGACATGTCTTACACTGGCAC
32179105 ATAAGTAATC
Statistics
Matches: 164, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
217 2 0.01
218 162 0.99
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (218 bp):
GCCGATGCATGTCCCAAACACGTCTTACACGGGCTACCATCGTCGAGGCCGATACATGTCCCAAA
CATGTCTTACACTAGCACTCATCTCTACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
CTCATAATGTGGTCAATGCATGTCCCAGACATGTCTTACACTGGCACTTATCTCTATGCCGATGC
CTTACACTGGCACTCATAATGTG
Found at i:32188897 original size:19 final size:20
Alignment explanation
Indices: 32188867--32188921 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
32188857 AAAAATATAA
*
32188867 ATTTTGGAATTTTTATCAA-T
1 ATTTT-GAATTTTTATAAATT
*
32188887 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTATAAATT
32188906 ATTTTGAAATTTTTAT
1 ATTTTG-AATTTTTAT
32188922 TGAGTGAGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 7 0.24
19 10 0.34
20 7 0.24
21 5 0.17
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (20 bp):
ATTTTGAATTTTTATAAATT
Found at i:32189056 original size:23 final size:23
Alignment explanation
Indices: 32189025--32189078 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
32189015 TCGAACTCGA
* *
32189025 AACTCGAATTACT-TATTCAAGTT
1 AACTCGAATAACTCAATTCAA-TT
*
32189048 GACTCGAATAACTCAATTCAATT
1 AACTCGAATAACTCAATTCAATT
32189071 AACTCGAA
1 AACTCGAA
32189079 ATTAGAAATC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 20 0.77
24 6 0.23
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (23 bp):
AACTCGAATAACTCAATTCAATT
Found at i:32193733 original size:16 final size:15
Alignment explanation
Indices: 32193699--32193734 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
32193689 AAATTTAAAG
32193699 AAAAATGAGTATTGT
1 AAAAATGAGTATTGT
32193714 AAAAATG-GATATTGT
1 AAAAATGAG-TATTGT
32193729 AAAAAT
1 AAAAAT
32193735 ATTAATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 1 0.05
15 19 0.95
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.31
Consensus pattern (15 bp):
AAAAATGAGTATTGT
Found at i:32194146 original size:12 final size:12
Alignment explanation
Indices: 32194129--32194168 Score: 80
Period size: 12 Copynumber: 3.3 Consensus size: 12
32194119 TTTGTTTAGC
32194129 TAAATTTGGCTA
1 TAAATTTGGCTA
32194141 TAAATTTGGCTA
1 TAAATTTGGCTA
32194153 TAAATTTGGCTA
1 TAAATTTGGCTA
32194165 TAAA
1 TAAA
32194169 CTTGAGTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.15, T:0.40
Consensus pattern (12 bp):
TAAATTTGGCTA
Found at i:32195402 original size:21 final size:20
Alignment explanation
Indices: 32195374--32195412 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
32195364 GCATGTATTT
32195374 TGAAGCTTCTTGATAGATTA
1 TGAAGCTTCTTGATAGATTA
*
32195394 TGAATGCTTGTTGATAGAT
1 TGAA-GCTTCTTGATAGAT
32195413 ATACAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (20 bp):
TGAAGCTTCTTGATAGATTA
Found at i:32196243 original size:27 final size:26
Alignment explanation
Indices: 32196164--32196243 Score: 62
Period size: 27 Copynumber: 3.2 Consensus size: 26
32196154 ATGAGATTTA
32196164 TTTGGCTTCGGGCCATGATATTAGCAC
1 TTTGGCTTCGGGCCATGATATT-GCAC
* * * *
32196191 TTCGGGTTCGAG--AT-ACATTG-A-
1 TTTGGCTTCGGGCCATGATATTGCAC
*
32196212 GTTGGCTTCGGGCCATGATATTGGCAC
1 TTTGGCTTCGGGCCATGATATT-GCAC
32196239 TTTGG
1 TTTGG
32196244 TGTAAGTTTC
Statistics
Matches: 37, Mismatches: 10, Indels: 12
0.63 0.17 0.20
Matches are distributed among these distances:
21 8 0.22
22 1 0.03
23 3 0.08
24 8 0.22
25 3 0.08
26 1 0.03
27 13 0.35
ACGTcount: A:0.17, C:0.19, G:0.30, T:0.34
Consensus pattern (26 bp):
TTTGGCTTCGGGCCATGATATTGCAC
Found at i:32200698 original size:37 final size:37
Alignment explanation
Indices: 32200655--32200799 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
32200645 GCTCAGACGA
* * *
32200655 AATCTCCACACGAAGTTATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
32200692 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
32200729 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
32200766 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
32200800 ATATATTTCC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:32200915 original size:48 final size:48
Alignment explanation
Indices: 32200844--32201808 Score: 1606
Period size: 48 Copynumber: 20.1 Consensus size: 48
32200834 TGTTACAACA
* *
32200844 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
32200892 TTCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
32200940 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
32200988 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
32201036 TTCACATTAGCCATTCGGGTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
32201084 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
32201132 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
32201180 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
32201228 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
32201276 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * *
32201324 TTCACATTCGCCATTTGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
32201372 TTCACATTAGTCATTCGGCTTTACCACATATACATATCTCAGATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
32201420 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
32201468 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
32201516 TTCATATTAGCCATTCAGCTTTATCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
32201564 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
32201612 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
32201660 TTCACATTTGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
32201708 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
32201756 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
32201804 TTCAC
1 TTCAC
32201809 CGCAAGCTAT
Statistics
Matches: 850, Mismatches: 67, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 850 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:32204375 original size:7 final size:7
Alignment explanation
Indices: 32204363--32204402 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
32204353 CTTTTACTAC
32204363 CTAAATA
1 CTAAATA
32204370 CTAAATA
1 CTAAATA
*
32204377 CTAAAAA
1 CTAAATA
*
32204384 CAAAATA
1 CTAAATA
*
32204391 TTAAATA
1 CTAAATA
32204398 CTAAA
1 CTAAA
32204403 ATTTCTCGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (7 bp):
CTAAATA
Found at i:32204814 original size:47 final size:46
Alignment explanation
Indices: 32204763--32204858 Score: 165
Period size: 46 Copynumber: 2.0 Consensus size: 46
32204753 TAAGGCTCGA
*
32204763 TTTTTACTTATTTTATATGTTAAAGTTATATTAAAATAGTATATATGT
1 TTTTTACTT-TTTTATATGTTAAAGTTAT-TTAAAATAATATATATGT
32204811 TTTTTACTTTTTTATATGTTAAAGTTATTTAAAATAATATATATGT
1 TTTTTACTTTTTTATATGTTAAAGTTATTTAAAATAATATATATGT
32204857 TT
1 TT
32204859 ATTAAACATT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 19 0.40
47 19 0.40
48 9 0.19
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.56
Consensus pattern (46 bp):
TTTTTACTTTTTTATATGTTAAAGTTATTTAAAATAATATATATGT
Found at i:32209707 original size:30 final size:30
Alignment explanation
Indices: 32209648--32209703 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 30
32209638 TAAACCTCTT
*
32209648 CACTTTCCTCCCAAAACTTTTACTCCCTCC
1 CACTTTACTCCCAAAACTTTTACTCCCTCC
* *
32209678 CACTTTAC-CCCATAACTTTTGCTCCC
1 CACTTTACTCCCAAAACTTTTACTCCC
32209704 CTCCTATCCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
29 16 0.70
30 7 0.30
ACGTcount: A:0.20, C:0.45, G:0.02, T:0.34
Consensus pattern (30 bp):
CACTTTACTCCCAAAACTTTTACTCCCTCC
Found at i:32209929 original size:36 final size:35
Alignment explanation
Indices: 32209887--32209983 Score: 108
Period size: 36 Copynumber: 2.7 Consensus size: 35
32209877 ACCTAAATAA
*
32209887 TAATTTTATTTATATTCACTATTTATATTATTAAAT
1 TAATTTTA-TCATATTCACTATTTATATTATTAAAT
* *
32209923 TAATTTTCA-CATATTCTACTATCTATATTATTGAAT
1 TAATTTT-ATCATATTC-ACTATTTATATTATTAAAT
* *
32209959 T-ATTTTATCATATTGAATATTTATA
1 TAATTTTATCATATTCACTATTTATA
32209984 AATTTATGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
34 9 0.17
35 17 0.33
36 25 0.48
37 1 0.02
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.55
Consensus pattern (35 bp):
TAATTTTATCATATTCACTATTTATATTATTAAAT
Found at i:32210258 original size:19 final size:19
Alignment explanation
Indices: 32210221--32210258 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32210211 AAAGTTAATA
*
32210221 ACAAATTTGATTAATGTGG
1 ACAAATTTGATTAAGGTGG
*
32210240 ACAAATTTGATTACGGTGG
1 ACAAATTTGATTAAGGTGG
32210259 GTGATAATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.08, G:0.24, T:0.34
Consensus pattern (19 bp):
ACAAATTTGATTAAGGTGG
Found at i:32212439 original size:36 final size:37
Alignment explanation
Indices: 32212393--32212489 Score: 108
Period size: 36 Copynumber: 2.7 Consensus size: 37
32212383 AAAGGTATAA
* *
32212393 AATAACTGACTATTAATGAATAATTA-ACTGTTACCG
1 AATAACTGACTATTACTGAATAATTAGACTGCTACCG
* * * * *
32212429 GATAATTGACTGTTACTGGAT-ATTAGACTGCTACTG
1 AATAACTGACTATTACTGAATAATTAGACTGCTACCG
*
32212465 AATAACTGAATATTACTGAATAATT
1 AATAACTGACTATTACTGAATAATT
32212490 GATCATTACT
Statistics
Matches: 47, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
35 4 0.09
36 40 0.85
37 3 0.06
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (37 bp):
AATAACTGACTATTACTGAATAATTAGACTGCTACCG
Found at i:32212457 original size:18 final size:19
Alignment explanation
Indices: 32212412--32212469 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 19
32212402 CTATTAATGA
*
32212412 ATAATTA-ACTGTTACCGG
1 ATAATTAGACTGTTACTGG
32212430 ATAATT-GACTGTTACTGG
1 ATAATTAGACTGTTACTGG
* *
32212448 AT-ATTAGACTGCTACTGA
1 ATAATTAGACTGTTACTGG
32212466 ATAA
1 ATAA
32212470 CTGAATATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 3 0.09
18 30 0.88
19 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (19 bp):
ATAATTAGACTGTTACTGG
Found at i:32212481 original size:18 final size:18
Alignment explanation
Indices: 32212460--32212590 Score: 106
Period size: 18 Copynumber: 7.3 Consensus size: 18
32212450 ATTAGACTGC
*
32212460 TACTGAATAACTGAATAT
1 TACTGAATAACTGAATGT
* *
32212478 TACTGAATAATTG-ATCAT
1 TACTGAATAACTGAAT-GT
*
32212496 TACTGAATAACTGATTGT
1 TACTGAATAACTGAATGT
* * *
32212514 CATTGAATGAA-TGACTGT
1 TACTGAAT-AACTGAATGT
*
32212532 TACTGAATAACTTAATTGT
1 TACTGAATAACTGAA-TGT
* *
32212551 TACTGAATACCTG-ATTT
1 TACTGAATAACTGAATGT
* *
32212568 TACTGAATAATTGACTGT
1 TACTGAATAACTGAATGT
32212586 TACTG
1 TACTG
32212591 GACAACCGAT
Statistics
Matches: 89, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
17 17 0.19
18 55 0.62
19 17 0.19
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
TACTGAATAACTGAATGT
Found at i:32212500 original size:36 final size:36
Alignment explanation
Indices: 32212460--32212675 Score: 125
Period size: 36 Copynumber: 5.8 Consensus size: 36
32212450 ATTAGACTGC
*
32212460 TACTGAATAACTGAATATTACTGAATAATTGATCAT
1 TACTGAATAACTGAATGTTACTGAATAATTGATCAT
* * * *
32212496 TACTGAATAACTGATTGTCATTGAATGAA-TGA-CTGT
1 TACTGAATAACTGAATGTTACTGAAT-AATTGATC-AT
* ** *
32212532 TACTGAATAACTTAATTGTTACTGAATACCTGAT-TT
1 TACTGAATAACTGAA-TGTTACTGAATAATTGATCAT
* *
32212568 TACTGAATAATTGACTGTTACTGGACAACCGATCAATTGATCGA-
1 TACTGAATAACTGAATGTTACT-G---A---AT-AATTGATC-AT
** * * **
32212612 TACTGAATAACTGGTTATTATTGAATAATTGATTGT
1 TACTGAATAACTGAATGTTACTGAATAATTGATCAT
* *
32212648 TACCGAATAACTGACTGTTACTGAATAA
1 TACTGAATAACTGAATGTTACTGAATAA
32212676 ATAATTATTC
Statistics
Matches: 135, Mismatches: 29, Indels: 32
0.69 0.15 0.16
Matches are distributed among these distances:
35 8 0.06
36 84 0.62
37 16 0.12
39 1 0.01
40 1 0.01
42 2 0.01
43 6 0.04
44 17 0.13
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (36 bp):
TACTGAATAACTGAATGTTACTGAATAATTGATCAT
Found at i:32212572 original size:17 final size:18
Alignment explanation
Indices: 32212529--32212576 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
32212519 AATGAATGAC
*
32212529 TGTTACTGAATAACTTAAT
1 TGTTACTGAAT-ACCTAAT
*
32212548 TGTTACTGAATACCTGAT
1 TGTTACTGAATACCTAAT
32212566 T-TTACTGAATA
1 TGTTACTGAATA
32212577 ATTGACTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 10 0.37
18 6 0.22
19 11 0.41
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (18 bp):
TGTTACTGAATACCTAAT
Found at i:32212575 original size:54 final size:54
Alignment explanation
Indices: 32212460--32212590 Score: 149
Period size: 54 Copynumber: 2.4 Consensus size: 54
32212450 ATTAGACTGC
* * *
32212460 TACTGAATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGATTGT
1 TACTGAATAACTGACTGTTACTGAATAATTAATCATTACTGAATAACTGATTGT
* * ** *
32212514 CATTGAATGAA-TGACTGTTACTGAATAACTTAATTGTTACTGAATACCTGATT-T
1 TACTGAAT-AACTGACTGTTACTGAATAA-TTAATCATTACTGAATAACTGATTGT
*
32212568 TACTGAATAATTGACTGTTACTG
1 TACTGAATAACTGACTGTTACTG
32212591 GACAACCGAT
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
53 2 0.03
54 40 0.62
55 22 0.34
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (54 bp):
TACTGAATAACTGACTGTTACTGAATAATTAATCATTACTGAATAACTGATTGT
Found at i:32212655 original size:18 final size:18
Alignment explanation
Indices: 32212634--32212675 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
32212624 GGTTATTATT
* *
32212634 GAATAATTGATTGTTACC
1 GAATAACTGACTGTTACC
*
32212652 GAATAACTGACTGTTACT
1 GAATAACTGACTGTTACC
32212670 GAATAA
1 GAATAA
32212676 ATAATTATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (18 bp):
GAATAACTGACTGTTACC
Found at i:32213693 original size:46 final size:43
Alignment explanation
Indices: 32213548--32213762 Score: 137
Period size: 46 Copynumber: 4.7 Consensus size: 43
32213538 TGTGTGAGCT
* * * *
32213548 AGTGTAAGCCATGTCTGGGACATGCATCGACCA-CATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-GCATCA-AAT--GAGTC
* * * * *
32213594 AGTGTAAGACCATGTTTGGGACATGTCATCGGCGTTGAGACGAGTGC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGC-ATCAAATGAGT-C
32213641 TAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAAATGTAAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCATC-AAATG--AGTC
* * * * *
32213688 AGTGTAAGACTTGTCTAGGACATGCATCAGC-TACAAGATGTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAT-CAA-ATGAGTC
*
32213732 AGTGTAAGACCAAGTCTGGGACATGACATCG
1 AGTGTAAGA-CATGTCTGGGACATG-CATCG
32213763 ACACCTTACC
Statistics
Matches: 134, Mismatches: 22, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 57 0.43
47 31 0.23
48 18 0.13
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCAAATGAGTC
Found at i:32217663 original size:27 final size:28
Alignment explanation
Indices: 32217633--32217702 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
32217623 ATAATAAGTC
*
32217633 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
32217660 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
32217688 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32217703 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32225737 original size:27 final size:28
Alignment explanation
Indices: 32225707--32225776 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
32225697 ATAATAAGTC
*
32225707 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
32225734 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
32225762 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32225777 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32240538 original size:40 final size:40
Alignment explanation
Indices: 32240453--32240562 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
32240443 CTGGAAATTA
* *
32240453 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-GCTAC
*
32240494 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGC-TAC
32240533 TATCC-GGCTAAGACCCGAAGGCATTCGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGC
32240563 ACGTGGTTAT
Statistics
Matches: 63, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
38 1 0.02
39 30 0.48
40 32 0.51
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGCTAC
Found at i:32240576 original size:39 final size:40
Alignment explanation
Indices: 32240450--32240578 Score: 156
Period size: 39 Copynumber: 3.2 Consensus size: 40
32240440 ATGCTGGAAA
* *
32240450 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
32240490 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
32240530 TTCTATCC-GGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
32240569 TTATATCCGG
1 TTATATCCGG
32240579 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
38 1 0.01
39 37 0.50
40 36 0.49
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:32242759 original size:40 final size:40
Alignment explanation
Indices: 32242700--32242886 Score: 187
Period size: 40 Copynumber: 4.7 Consensus size: 40
32242690 CATTGGAATG
* * * *
32242700 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
32242740 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
32242780 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * * *
32242820 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCAAATCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * *
32242860 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
32242887 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 3 0.02
40 117 0.96
41 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:32242802 original size:80 final size:80
Alignment explanation
Indices: 32242700--32242851 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 80
32242690 CATTGGAATG
* * ** *
32242700 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
32242765 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
32242780 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
32242845 ATCGTGC
66 ATCGTGC
32242852 AAATCACTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:32248041 original size:14 final size:15
Alignment explanation
Indices: 32248024--32248052 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32248014 GACTATGGTA
32248024 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
32248038 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
32248053 TATTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:32254051 original size:43 final size:43
Alignment explanation
Indices: 32253990--32254075 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
32253980 GTTAGGGTTC
32253990 ATGTTAAAAAATATACCCATGAATGACATGCTTGTAATTTGAT
1 ATGTTAAAAAATATACCCATGAATGACATGCTTGTAATTTGAT
*
32254033 ATGTTAAAAAATATACCCATGAATGACATGCTTGTACTTTGAT
1 ATGTTAAAAAATATACCCATGAATGACATGCTTGTAATTTGAT
32254076 GTCTAATGGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (43 bp):
ATGTTAAAAAATATACCCATGAATGACATGCTTGTAATTTGAT
Found at i:32254753 original size:48 final size:48
Alignment explanation
Indices: 32254682--32254820 Score: 224
Period size: 48 Copynumber: 2.9 Consensus size: 48
32254672 CACCATGATT
*
32254682 TATGAGAGCCAGTGTAAGACCATGTCTGAGACATGGCATCAGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGA
*
32254730 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGA
* * * *
32254778 TATGTGTGCCAGTGTAAGACCATATCTGGGATATGGCATCAGC
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC
32254821 TTCCGTATCT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGA
Found at i:32254890 original size:42 final size:42
Alignment explanation
Indices: 32254831--32254948 Score: 137
Period size: 42 Copynumber: 2.8 Consensus size: 42
32254821 TTCCGTATCT
* * *
32254831 GATTTCATGTAAGACCATATCTGGGATATGTCGTTGATATGA
1 GATTTCATGTAAGACCATATCTGGGACATGGCATTGATATGA
* *
32254873 GATTTCATGTAAGACCATGTCTTGGACATGGCATTGATATGA
1 GATTTCATGTAAGACCATATCTGGGACATGGCATTGATATGA
* ** * * *
32254915 GGTCCCATATAAGACTATGTCTGGGACATGGCAT
1 GATTTCATGTAAGACCATATCTGGGACATGGCAT
32254949 CGGCACCGAA
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (42 bp):
GATTTCATGTAAGACCATATCTGGGACATGGCATTGATATGA
Found at i:32254963 original size:90 final size:90
Alignment explanation
Indices: 32254869--32255035 Score: 210
Period size: 90 Copynumber: 1.9 Consensus size: 90
32254859 TGTCGTTGAT
* * * * * * *
32254869 ATGAGATTTCATGTAAGACCATGTCTTGGACATGGCATTGATATG-AGGTCCCATATAAGACTAT
1 ATGAGACTTCATATAAGACCATATCTAGGACATGGCATCGATATGTA-GACCCATATAAGACCAT
*
32254933 GTCTGGGACATGGCATCGGCACCGAA
65 GTCAGGGACATGGCATCGGCACCGAA
* * * *
32254959 ATGAGACTTCGTATAAGACCATATCTAGGATATGGCATCGGTATGTAGACCCATGTAAGACCATG
1 ATGAGACTTCATATAAGACCATATCTAGGACATGGCATCGATATGTAGACCCATATAAGACCATG
32255024 TCAGGGACATGG
66 TCAGGGACATGG
32255036 AATTGGCATT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
90 63 0.98
91 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (90 bp):
ATGAGACTTCATATAAGACCATATCTAGGACATGGCATCGATATGTAGACCCATATAAGACCATG
TCAGGGACATGGCATCGGCACCGAA
Found at i:32262632 original size:48 final size:48
Alignment explanation
Indices: 32262554--32262689 Score: 157
Period size: 48 Copynumber: 2.8 Consensus size: 48
32262544 CACTATGATT
* * *
32262554 TATGAGAGCCT-GTGTAAGACAATGTCTGGGACATGGCATCGGCGTTGA
1 TATGAGAG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGCCATTGA
*
32262602 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGCCATTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCATTGA
* * * * * * *
32262650 TATGTGTGCCAGTGTGAGACCATGTGTGGGATATGACATC
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
32262690 AGCCTCGGTT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
47 2 0.03
48 74 0.97
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCATTGA
Found at i:32265356 original size:40 final size:39
Alignment explanation
Indices: 32265299--32265483 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
32265289 ATTAAATGAT
* * *
32265299 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
32265339 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
32265379 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
32265419 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
32265459 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
32265484 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:32265435 original size:80 final size:80
Alignment explanation
Indices: 32265298--32265504 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
32265288 AATTAAATGA
* * ** * *
32265298 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
32265363 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
32265376 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
32265441 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
32265458 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
32265505 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:32265489 original size:40 final size:39
Alignment explanation
Indices: 32265297--32265504 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
32265287 CAATTAAATG
* * ** *
32265297 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
32265337 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
32265377 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
32265417 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
32265457 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
32265497 ATATCCGG
1 ATATCCGG
32265505 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:32268656 original size:68 final size:70
Alignment explanation
Indices: 32268584--32268781 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
32268574 ACACCCTGTA
* * * *
32268584 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
32268646 ATAAAT
65 ATAAAT
*
32268652 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
32268717 ATAAAT
65 ATAAAT
*
32268723 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
32268782 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:32268695 original size:41 final size:41
Alignment explanation
Indices: 32268650--32268767 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
32268640 TGAAAGATAA
32268650 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
32268691 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32268721 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32268762 ATGTAG
1 ATGTAG
32268768 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:32268707 original size:71 final size:71
Alignment explanation
Indices: 32268618--32268781 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
32268608 GAGATGTATC
32268618 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32268683 AGGACA
66 AGGACA
32268689 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32268754 AGGACA
66 AGGACA
32268760 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32268782 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32283189 original size:12 final size:12
Alignment explanation
Indices: 32283172--32283202 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
32283162 TCCTAAAATC
32283172 AATTTCTATTGA
1 AATTTCTATTGA
32283184 AATTTCTATTGA
1 AATTTCTATTGA
32283196 AATTTCT
1 AATTTCT
32283203 TGATAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.52
Consensus pattern (12 bp):
AATTTCTATTGA
Found at i:32285024 original size:37 final size:37
Alignment explanation
Indices: 32284975--32285057 Score: 132
Period size: 37 Copynumber: 2.3 Consensus size: 37
32284965 TTTAATTTTT
*
32284975 TTAA-ATTTTAAAAATTAAGTATAATTGTTAATACAG
1 TTAAGATTATAAAAATTAAGTATAATTGTTAATACAG
* *
32285011 TTAAGATTATAAAATTTAAGTATAATTGTTAATACGG
1 TTAAGATTATAAAAATTAAGTATAATTGTTAATACAG
32285048 TTAAGATTAT
1 TTAAGATTAT
32285058 TTTATTAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
36 4 0.09
37 39 0.91
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.42
Consensus pattern (37 bp):
TTAAGATTATAAAAATTAAGTATAATTGTTAATACAG
Found at i:32286027 original size:37 final size:33
Alignment explanation
Indices: 32285979--32286047 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
32285969 TACCTTATTA
*
32285979 ATATAAAGTATAACTTTATGACTTAAAAAGATAAATT
1 ATATAAAGTATAA-TTTA--A-TAAAAAAGATAAATT
*
32286016 ATATGAAGTATAATTTAATAAAAAAGATAAAT
1 ATATAAAGTATAATTTAATAAAAAAGATAAAT
32286048 ATAATACAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 13 0.43
34 1 0.03
36 4 0.13
37 12 0.40
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (33 bp):
ATATAAAGTATAATTTAATAAAAAAGATAAATT
Found at i:32289800 original size:30 final size:30
Alignment explanation
Indices: 32289766--32289867 Score: 93
Period size: 30 Copynumber: 3.3 Consensus size: 30
32289756 TATATCTAAC
32289766 TAAAAATAATTTAAAAACTATAAAAATATT
1 TAAAAATAATTTAAAAACTATAAAAATATT
* *
32289796 TAAAAATAA--TAATAATTCA-AAAAATATAT
1 TAAAAATAATTTAAAAACT-ATAAAAATAT-T
32289825 CTAACCAAAAATAATTTAAAAACTATAAAAATATT
1 -T----AAAAATAATTTAAAAACTATAAAAATATT
*
32289860 CAAAAATA
1 TAAAAATA
32289868 GCATGAATTA
Statistics
Matches: 57, Mismatches: 5, Indels: 20
0.70 0.06 0.24
Matches are distributed among these distances:
28 14 0.25
29 2 0.04
30 17 0.30
34 8 0.14
35 2 0.04
36 14 0.25
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (30 bp):
TAAAAATAATTTAAAAACTATAAAAATATT
Found at i:32292186 original size:43 final size:43
Alignment explanation
Indices: 32291968--32292168 Score: 348
Period size: 43 Copynumber: 4.7 Consensus size: 43
32291958 GGAAAAAAAT
*
32291968 GCCGCTAAAGGTCAAGGCTTTTAGCGGCTTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
* * * *
32292011 GCCGTTAAAGGTTAAGGCTTTTAGCGACGTTTGTGGTAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
*
32292054 GCCGCTAAAGGTCAAGGCTTCTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
32292097 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
32292140 GCCGCTAAAGGTCAAGGCTTTTAGCGGCG
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCG
32292169 CTTTTTTTAC
Statistics
Matches: 147, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 147 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.24
Consensus pattern (43 bp):
GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
Found at i:32292186 original size:86 final size:86
Alignment explanation
Indices: 32291968--32292191 Score: 312
Period size: 86 Copynumber: 2.6 Consensus size: 86
32291958 GGAAAAAAAT
*
32291968 GCCGCTAAAGGTCAAGGCTTTTAGC-G-GCTTTTGTGGGAAAAGCGCCGTTAAAGGTTAAGGCTT
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTTT-T-GGAAAAGCGCCGTTAAAGGTCAAGGCTT
*
32292031 TTAGCGACGTTTGTGGTAAAAGC
64 TTAGCGACGTTTGTGGGAAAAGC
* * *
32292054 GCCGCTAAAGGTCAAGGCTTCTAGCGGCG-TTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTT
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTT-TTGGAAAAGCGCCGTTAAAGGTCAAGGCTTT
*
32292118 TAGCGGCGTTTGTGGGAAAAGC
65 TAGCGACGTTTGTGGGAAAAGC
**
32292140 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTTTTTTACAAA-CGCCGTTAAA
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTTTTGGA-AAAGCGCCGTTAAA
32292192 TTTGGCAGAT
Statistics
Matches: 122, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
86 110 0.90
87 10 0.08
88 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (86 bp):
GCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTTTTGGAAAAGCGCCGTTAAAGGTCAAGGCTTTT
AGCGACGTTTGTGGGAAAAGC
Found at i:32292307 original size:30 final size:31
Alignment explanation
Indices: 32292243--32292308 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 31
32292233 CTTCCTGCAT
*
32292243 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAATACAACAAATATAACA
* * * *
32292274 TAAAATGCAGCCAAA-ACAGCAAATTTAACA
1 TAAAATCCAACCAAATACAACAAATATAACA
32292304 TAAAA
1 TAAAA
32292309 AATACAACCA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.59, C:0.18, G:0.05, T:0.18
Consensus pattern (31 bp):
TAAAATCCAACCAAATACAACAAATATAACA
Found at i:32292320 original size:32 final size:30
Alignment explanation
Indices: 32292244--32292321 Score: 75
Period size: 32 Copynumber: 2.5 Consensus size: 30
32292234 TTCCTGCATT
* *
32292244 AAAATCCAACCAAATACAACAAATATAATAT
1 AAAATACAACCAAA-ACAACAAATATAATAA
* * * *
32292275 AAAATGCAGCCAAAACAGCAAATTTAACATAA
1 AAAATACAACCAAAACAACAAATAT-A-ATAA
32292307 AAAATACAACCAAAA
1 AAAATACAACCAAAA
32292322 ATATTAATTC
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
30 9 0.24
31 13 0.34
32 16 0.42
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.15
Consensus pattern (30 bp):
AAAATACAACCAAAACAACAAATATAATAA
Found at i:32292592 original size:21 final size:21
Alignment explanation
Indices: 32292568--32292613 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
32292558 GCTCGTGCCT
*
32292568 CTGCCTCTCTCGCTGCAGCCG
1 CTGCCTCCCTCGCTGCAGCCG
* * *
32292589 CTGCCTCCCTCTCTGCTGCCT
1 CTGCCTCCCTCGCTGCAGCCG
32292610 CTGC
1 CTGC
32292614 TCTAAGTTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.50, G:0.20, T:0.28
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCAGCCG
Found at i:32298282 original size:9 final size:9
Alignment explanation
Indices: 32298268--32298493 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
32298258 TATTTAAGTA
32298268 TTATGTAAG
1 TTATGTAAG
*
32298277 TTATGTAAT
1 TTATGTAAG
*
32298286 TTATGATATG
1 TTATG-TAAG
* * *
32298296 ATATAT-AT
1 TTATGTAAG
*
32298304 TTATGTAAA
1 TTATGTAAG
* *
32298313 TTATAT-AT
1 TTATGTAAG
*
32298321 TTATCTAAG
1 TTATGTAAG
*
32298330 TTATATAAG
1 TTATGTAAG
32298339 TTATGTAAG
1 TTATGTAAG
*
32298348 TTATGTAAA
1 TTATGTAAG
*
32298357 TTATGATATAAAA
1 TTATG---T-AAG
*
32298370 TATATTTAAG
1 T-TATGTAAG
32298380 TATTATGTAAG
1 --TTATGTAAG
32298391 TTATGTAAG
1 TTATGTAAG
* *
32298400 TTATAT-AT
1 TTATGTAAG
*
32298408 TTATCTAAG
1 TTATGTAAG
*
32298417 TTATATAAG
1 TTATGTAAG
*
32298426 TTATATAAG
1 TTATGTAAG
*
32298435 TTATGTATG
1 TTATGTAAG
*
32298444 TTATATAAG
1 TTATGTAAG
32298453 TTATGTAAG
1 TTATGTAAG
* *
32298462 TTATATATG
1 TTATGTAAG
*
32298471 TTATATAAG
1 TTATGTAAG
*
32298480 TTATGTAAA
1 TTATGTAAG
32298489 TTATG
1 TTATG
32298494 ATATCAAATA
Statistics
Matches: 171, Mismatches: 35, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
8 16 0.09
9 131 0.77
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:32298347 original size:18 final size:18
Alignment explanation
Indices: 32298268--32298493 Score: 161
Period size: 18 Copynumber: 12.3 Consensus size: 18
32298258 TATTTAAGTA
* *
32298268 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
32298286 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
32298304 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
32298321 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
32298339 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
* *
32298357 TTATGATATAAAATATATTTAAG
1 TTATG---T-AAGT-TATATAAG
*
32298380 TATTATGTAAGTTATGTAAG
1 --TTATGTAAGTTATATAAG
* * *
32298400 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
32298417 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
32298435 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
32298453 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* * *
32298471 TTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
32298489 TTATG
1 TTATG
32298494 ATATCAAATA
Statistics
Matches: 167, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
17 37 0.22
18 97 0.58
19 7 0.04
20 7 0.04
21 4 0.02
22 4 0.02
23 6 0.04
25 5 0.03
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:32298360 original size:27 final size:27
Alignment explanation
Indices: 32298321--32298493 Score: 159
Period size: 27 Copynumber: 6.2 Consensus size: 27
32298311 AATTATATAT
*
32298321 TTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
32298348 TTATGTAAATTATGATATAAAATATATTTAAG
1 TTATGT-AAGT-T-ATAT-AAGT-TATGTAAG
* * *
32298380 TATTATGTAAGTTATGTAAGTTATAT-AT
1 --TTATGTAAGTTATATAAGTTATGTAAG
* *
32298408 TTATCTAAGTTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
*
32298435 TTATGTATGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
32298462 TTATATATGTTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAGTTATGTAAG
32298489 TTATG
1 TTATG
32298494 ATATCAAATA
Statistics
Matches: 120, Mismatches: 18, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
26 22 0.18
27 59 0.49
28 4 0.03
29 5 0.04
30 7 0.06
31 6 0.05
32 8 0.07
33 3 0.03
34 6 0.05
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (27 bp):
TTATGTAAGTTATATAAGTTATGTAAG
Found at i:32298378 original size:114 final size:114
Alignment explanation
Indices: 32298244--32298465 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
32298234 ACTAGTTATG
* * * *
32298244 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATAT-ATTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-ATATATAAGTTAT
* *
32298308 GTAAATTATAT-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
64 ATAAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
* *
32298358 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
* * *
32298423 AAGTTATATAAGTTATGTATGTTATATAAGTTATGTAAGTTAT
66 AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTAT
32298466 ATATGTTATA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 4 0.04
113 18 0.19
114 73 0.77
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.48
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
Found at i:32298617 original size:15 final size:15
Alignment explanation
Indices: 32298597--32298652 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
32298587 AAGTAGCGGG
32298597 ATTAAATAATATTTA
1 ATTAAATAATATTTA
32298612 ATTAAATAATATTT-
1 ATTAAATAATATTTA
32298626 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
32298641 ATTAAATAATAT
1 ATTAAATAATAT
32298653 ACATGTCGTC
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.44
16 6 0.17
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:32298856 original size:24 final size:24
Alignment explanation
Indices: 32298828--32298895 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
32298818 ACTTAAATGG
32298828 TAAAACGGACGATAATATTTGTAA
1 TAAAACGGACGATAATATTTGTAA
*
32298852 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTAA
*
32298876 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
32298896 CAATAATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 38 0.95
25 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTAA
Found at i:32302471 original size:40 final size:36
Alignment explanation
Indices: 32302367--32302471 Score: 120
Period size: 37 Copynumber: 2.8 Consensus size: 36
32302357 ATCACGATTT
*
32302367 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAAACTA
**
32302404 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA--TA-AAACTA
*
32302444 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
32302472 TTATAATTTC
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
37 28 0.47
39 4 0.07
40 27 0.46
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (36 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAAAACTA
Found at i:32310492 original size:40 final size:40
Alignment explanation
Indices: 32310448--32310559 Score: 161
Period size: 40 Copynumber: 2.8 Consensus size: 40
32310438 ATATCACGAT
*
32310448 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAACAAC
* * *
32310488 TTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAACAAC
* * *
32310528 TAGCACAATTGCCTTCGGGTCTTAACCCGGAT
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGAT
32310560 ATAATTTCCA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (40 bp):
TTGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAACAAC
Found at i:32313737 original size:38 final size:37
Alignment explanation
Indices: 32313686--32313762 Score: 118
Period size: 38 Copynumber: 2.1 Consensus size: 37
32313676 GCATATAGTA
* *
32313686 GCCTTTTTCTTTCTCACATTACATGAAGAAAAAACATT
1 GCCTTCTTCTTTCTCACATTACAAGAAG-AAAAACATT
*
32313724 GCCTTCTTCTTTCTCACATTGCAAGAAGAAAAACATT
1 GCCTTCTTCTTTCTCACATTACAAGAAGAAAAACATT
32313761 GC
1 GC
32313763 ATAAGTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
37 11 0.31
38 25 0.69
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.34
Consensus pattern (37 bp):
GCCTTCTTCTTTCTCACATTACAAGAAGAAAAACATT
Found at i:32318305 original size:29 final size:29
Alignment explanation
Indices: 32318233--32318305 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
32318223 AAAATTGTAC
*
32318233 AGCACTAAGTGTGCAAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
32318262 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
32318291 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
32318306 GATTCACTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:32322798 original size:20 final size:18
Alignment explanation
Indices: 32322758--32322794 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
32322748 AGTTCGTAAA
32322758 ACTAAATTGTGTATTTAT
1 ACTAAATTGTGTATTTAT
32322776 ACTAAATTGTGTATTTAT
1 ACTAAATTGTGTATTTAT
32322794 A
1 A
32322795 TACTTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.05, G:0.11, T:0.49
Consensus pattern (18 bp):
ACTAAATTGTGTATTTAT
Found at i:32326156 original size:40 final size:40
Alignment explanation
Indices: 32326096--32326263 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
32326086 CGGGATTTAA
* ** *
32326096 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
32326136 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
32326176 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
32326216 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
32326256 CCGGATAT
1 CCGGATAT
32326264 CATTCAAATG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.02
40 104 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:32326243 original size:80 final size:80
Alignment explanation
Indices: 32326082--32326263 Score: 215
Period size: 80 Copynumber: 2.3 Consensus size: 80
32326072 AATTCACGTA
* * * * **
32326082 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
* *
32326146 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
32326161 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
32326225 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
32326241 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
32326264 CATTCAAATG
Statistics
Matches: 86, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 11 0.13
80 73 0.85
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:32330064 original size:14 final size:13
Alignment explanation
Indices: 32330025--32330055 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
32330015 TTTTGAAAAT
*
32330025 AAATATTTTTTTA
1 AAATATCTTTTTA
32330038 AAATATCTTTTTA
1 AAATATCTTTTTA
32330051 AAATA
1 AAATA
32330056 CAATTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (13 bp):
AAATATCTTTTTA
Found at i:32335815 original size:14 final size:14
Alignment explanation
Indices: 32335796--32335822 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32335786 GTGGTCTAGT
32335796 TGAACTGAACTGAG
1 TGAACTGAACTGAG
32335810 TGAACTGAACTGA
1 TGAACTGAACTGA
32335823 CCAAGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (14 bp):
TGAACTGAACTGAG
Found at i:32348958 original size:86 final size:86
Alignment explanation
Indices: 32348813--32348989 Score: 345
Period size: 86 Copynumber: 2.1 Consensus size: 86
32348803 ATAATTGAGG
32348813 AATTCTATATTTTAGATCAAGATCCCGTAGATACTTGTGAAAAAAGAAAAATAGTAGAATAATCC
1 AATTCTATATTTTAGATCAAGATCCCGTAGATACTTGTGAAAAAAGAAAAATAGTAGAATAATCC
32348878 CTGAGCTTCTACAACTGCTAC
66 CTGAGCTTCTACAACTGCTAC
32348899 AATTCTATATTTTAGATCAAGATCCCGTAGATACTTGTGAAAAAAGAAAAATAGTAGAATAATCC
1 AATTCTATATTTTAGATCAAGATCCCGTAGATACTTGTGAAAAAAGAAAAATAGTAGAATAATCC
*
32348964 CTGAGCTTCTGCAACTGCTAC
66 CTGAGCTTCTACAACTGCTAC
32348985 AATTC
1 AATTC
32348990 AGCCCATGTA
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 90 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (86 bp):
AATTCTATATTTTAGATCAAGATCCCGTAGATACTTGTGAAAAAAGAAAAATAGTAGAATAATCC
CTGAGCTTCTACAACTGCTAC
Found at i:32351483 original size:17 final size:17
Alignment explanation
Indices: 32351461--32351510 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
32351451 ACTCGTTAAA
32351461 GCCCGATAAATGA-AAGT
1 GCCCGATAAATGATAA-T
* *
32351478 GCCCGATCAATTATAAT
1 GCCCGATAAATGATAAT
*
32351495 GCCCGACAAATGATAA
1 GCCCGATAAATGATAA
32351511 ATGATAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 25 0.93
18 2 0.07
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:32371217 original size:53 final size:53
Alignment explanation
Indices: 32371038--32371241 Score: 131
Period size: 53 Copynumber: 3.8 Consensus size: 53
32371028 AGGGTTTAAG
* * * * * * * *
32371038 GATACCAAGTAAGACCATGCCAAGACATGGCATTGGGAAGTTTTACAAGGCAAG
1 GATACCACGTAAGACCATACCAAGACATGACAATGGTAAG-TTCATAAGGCAAA
* * * ** * * * *
32371092 GAAATCATGTAAGACCATGTCAAGACATTG-CATTGATAAACTACGATAAGGCAAA
1 GATACCACGTAAGACCATACCAAGACA-TGACAATGGT-AAGTTC-ATAAGGCAAA
* * * * * * *
32371147 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCACGTAAGACCATACCAAGACATGACAATGGTAAGTTCATAAGGCAAA
* *
32371200 GATACCACGTAATACCATATCAAGACATGACAATGGTAAGTT
1 GATACCACGTAAGACCATACCAAGACATGACAATGGTAAGTT
32371242 TAAAAAGGAA
Statistics
Matches: 116, Mismatches: 30, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
53 43 0.37
54 34 0.29
55 39 0.34
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (53 bp):
GATACCACGTAAGACCATACCAAGACATGACAATGGTAAGTTCATAAGGCAAA
Found at i:32381086 original size:27 final size:28
Alignment explanation
Indices: 32381029--32381098 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
32381019 AAATTTGTAC
**
32381029 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
32381057 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
32381084 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
32381099 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:32381107 original size:27 final size:27
Alignment explanation
Indices: 32381029--32381110 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
32381019 AAATTTGTAC
* *
32381029 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
32381057 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
32381084 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
32381111 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:32389157 original size:27 final size:28
Alignment explanation
Indices: 32389100--32389169 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
32389090 AAATTTGTAC
**
32389100 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
32389128 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
32389155 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
32389170 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:32389178 original size:27 final size:27
Alignment explanation
Indices: 32389100--32389181 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
32389090 AAATTTGTAC
* *
32389100 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
32389128 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
32389155 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
32389182 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:32391360 original size:40 final size:39
Alignment explanation
Indices: 32391294--32391434 Score: 135
Period size: 39 Copynumber: 3.6 Consensus size: 39
32391284 AAATTGAATG
* * *
32391294 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAG-AACT
* * **
32391333 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAACT
* ***
32391372 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTTTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAACT
*
32391410 AAATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
32391435 TTTGTGCAAA
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
38 30 0.34
39 41 0.47
40 17 0.19
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAACT
Found at i:32391425 original size:38 final size:37
Alignment explanation
Indices: 32391335--32391442 Score: 144
Period size: 38 Copynumber: 2.8 Consensus size: 37
32391325 TGGAAATTAT
* *
32391335 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCTAT
1 ATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGTGCTAA
**
32391374 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTTTAA
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAGTGCTAA
32391412 ATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
32391443 AATCGTGATA
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
38 36 0.57
39 27 0.43
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (37 bp):
ATCCGGGCTAAGACCCGAAGGCATTGTGCAGTGCTAA
Found at i:32399431 original size:40 final size:40
Alignment explanation
Indices: 32399387--32399498 Score: 154
Period size: 40 Copynumber: 2.8 Consensus size: 40
32399377 TGGAAATTAT
* * *
32399387 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGCTAA
* *
32399427 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGGCTAA
*
32399467 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAA
32399499 ATCGTGATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
39 3 0.05
40 59 0.92
41 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGCTAA
Found at i:32399511 original size:40 final size:38
Alignment explanation
Indices: 32399341--32399528 Score: 146
Period size: 40 Copynumber: 4.8 Consensus size: 38
32399331 TGAGAAATTG
* * * *
32399341 AATG-ATATCCGGGCTAAGCCCCGAAGACGTTAATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGCATT--TG-TGCA
* * *
32399381 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
32399418 AGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
32399458 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
32399498 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
32399529 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 22, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 2 0.02
40 110 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:32404097 original size:40 final size:40
Alignment explanation
Indices: 32404037--32404200 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
32404027 CGGGATTTAA
* ** *
32404037 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
32404077 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
32404117 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * * *
32404157 CCGGACATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
32404197 CCGG
1 CCGG
32404201 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 99 0.95
41 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:32404184 original size:80 final size:80
Alignment explanation
Indices: 32404023--32404200 Score: 198
Period size: 80 Copynumber: 2.2 Consensus size: 80
32404013 GAGTCACGTA
* * * ** **
32404023 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGACATAA
* *
32404087 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
32404102 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGACATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGACATA
* *
32404166 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
32404182 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32404201 GTATCATTCA
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 11 0.14
80 68 0.84
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGACATAA
TAACTAGCACAAATG
Found at i:32409051 original size:46 final size:46
Alignment explanation
Indices: 32408899--32409068 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
32408889 AACCCGCCCC
* *
32408899 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
32408943 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
32408991 TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
32409035 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32409069 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 2 0.02
44 34 0.32
45 6 0.06
46 44 0.42
47 6 0.06
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:32409066 original size:92 final size:91
Alignment explanation
Indices: 32408904--32409071 Score: 293
Period size: 92 Copynumber: 1.8 Consensus size: 91
32408894 GCCCCTAAGT
*
32408904 GAACTCGGACTCAACTCAACGAGCTCGGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
32408969 AGTTCGGATGCCTAGTTACATCTCAC
66 AGTTCGGATGCCTAGTTACATCTCAC
*
32408995 GAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32409059 CGAGTTCGGATGC
64 CGAGTTCGGATGC
32409072 TCAACCATCC
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
90 20 0.27
91 6 0.08
92 47 0.64
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:32409087 original size:46 final size:44
Alignment explanation
Indices: 32408899--32409079 Score: 181
Period size: 44 Copynumber: 4.0 Consensus size: 44
32408889 AACCCGCCCC
* * * *
32408899 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGCAACCA
32408943 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGC-A---ACCA
* * * *
32408989 TCTCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCGCAACCA
*
32409035 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGCAACCA
32409079 T
1 T
32409080 CCTAGTGACA
Statistics
Matches: 112, Mismatches: 13, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
43 1 0.01
44 46 0.41
45 6 0.05
46 46 0.41
47 6 0.05
48 6 0.05
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGCAACCA
Found at i:32416572 original size:46 final size:46
Alignment explanation
Indices: 32416420--32416589 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
32416410 AACCCGCCCC
* * *
32416420 TAAGTGAACTCGGACTCAACTC-AC-AGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
32416464 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
32416512 TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
32416556 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32416590 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 2 0.02
44 24 0.23
45 8 0.08
46 50 0.48
47 6 0.06
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:32416608 original size:46 final size:44
Alignment explanation
Indices: 32416466--32416608 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
32416456 CGCATCCATA
32416466 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
32416513 CA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
32416558 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
32416604 AGTGA
1 AGTGA
32416609 CATGTCACTT
Statistics
Matches: 78, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
44 10 0.13
45 6 0.08
46 50 0.64
47 6 0.08
48 5 0.06
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:32419682 original size:26 final size:26
Alignment explanation
Indices: 32419651--32419758 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
32419641 TGAAATGCCC
*
32419651 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
32419677 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
32419703 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
32419729 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
32419755 ATCA
1 ATCA
32419759 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:32420734 original size:13 final size:13
Alignment explanation
Indices: 32420713--32420783 Score: 79
Period size: 13 Copynumber: 5.5 Consensus size: 13
32420703 AAATTTTTCC
*
32420713 AAAGCACTTCTTA
1 AAAGCACTTCTCA
*
32420726 AAAGTACTTCTCA
1 AAAGCACTTCTCA
* *
32420739 AAAGCACTTTTCC
1 AAAGCACTTCTCA
* *
32420752 ACAGCACTTTTCA
1 AAAGCACTTCTCA
*
32420765 AAAGCACTTTTCA
1 AAAGCACTTCTCA
32420778 AAAGCA
1 AAAGCA
32420784 ATGAAGAACT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.28
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:32420742 original size:26 final size:26
Alignment explanation
Indices: 32420713--32420783 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
32420703 AAATTTTTCC
*
32420713 AAAGCACTTCTT-AAAAGTACTTCTCA
1 AAAGCACTT-TTCAAAAGCACTTCTCA
* * *
32420739 AAAGCACTTTTCCACAGCACTTTTCA
1 AAAGCACTTTTCAAAAGCACTTCTCA
32420765 AAAGCACTTTTCAAAAGCA
1 AAAGCACTTTTCAAAAGCA
32420784 ATGAAGAACT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 2 0.05
26 36 0.95
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.28
Consensus pattern (26 bp):
AAAGCACTTTTCAAAAGCACTTCTCA
Found at i:32420758 original size:39 final size:39
Alignment explanation
Indices: 32420707--32420783 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
32420697 ACACTTAAAT
*
32420707 TTTTCCAAAGCACTTCTT-AAAAGTACTTCTCAAAAGCAC
1 TTTTCCAAAGCACTT-TTCAAAAGCACTTCTCAAAAGCAC
* *
32420746 TTTTCCACAGCACTTTTCAAAAGCACTTTTCAAAAGCA
1 TTTTCCAAAGCACTTTTCAAAAGCACTTCTCAAAAGCA
32420784 ATGAAGAACT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.06
39 32 0.94
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (39 bp):
TTTTCCAAAGCACTTTTCAAAAGCACTTCTCAAAAGCAC
Found at i:32421230 original size:49 final size:50
Alignment explanation
Indices: 32421150--32421368 Score: 262
Period size: 49 Copynumber: 4.4 Consensus size: 50
32421140 ATCTATTGTG
*
32421150 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
32421200 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * **
32421250 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* ** *
32421300 AGGTCACGTGTGTAGTACTAAGCACAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
32421350 -GGTCACATGTATAGTACTA
1 AGGTCACATGTGTAGTACTA
32421369 GATAATTGGT
Statistics
Matches: 143, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 59 0.41
50 45 0.31
51 39 0.27
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:32421373 original size:26 final size:26
Alignment explanation
Indices: 32421343--32421394 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32421333 ACGTGTACCG
32421343 GATAATTGGTCACATGTATAGTACTA
1 GATAATTGGTCACATGTATAGTACTA
* *
32421369 GATAATTGGTCGCATGTGTAGTACTA
1 GATAATTGGTCACATGTATAGTACTA
32421395 AGTGCAGGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.35
Consensus pattern (26 bp):
GATAATTGGTCACATGTATAGTACTA
Found at i:32424207 original size:18 final size:18
Alignment explanation
Indices: 32424184--32424218 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
32424174 TAAAAGAAAA
32424184 CATACTATCACAATTAAG
1 CATACTATCACAATTAAG
32424202 CATACTATCACAATTAA
1 CATACTATCACAATTAA
32424219 TCATGGTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.29
Consensus pattern (18 bp):
CATACTATCACAATTAAG
Found at i:32424411 original size:23 final size:23
Alignment explanation
Indices: 32424374--32424473 Score: 76
Period size: 23 Copynumber: 4.3 Consensus size: 23
32424364 CCCACTGAAG
* * * *
32424374 ACAACCACATGTACCTTCTAGAC
1 ACAACCAAATATACCTTCCAAAC
**
32424397 ACAACCAAATATACCCGCCAAAC
1 ACAACCAAATATACCTTCCAAAC
* *
32424420 ACAACCATATATTTACCTT-CGAAC
1 ACAACCA-A-ATATACCTTCCAAAC
* * *
32424444 AAAACCAAGTATACCATCCAAAC
1 ACAACCAAATATACCTTCCAAAC
32424467 ACAACCA
1 ACAACCA
32424474 CTATACCCTT
Statistics
Matches: 58, Mismatches: 16, Indels: 6
0.73 0.20 0.08
Matches are distributed among these distances:
22 6 0.10
23 35 0.60
24 11 0.19
25 6 0.10
ACGTcount: A:0.44, C:0.34, G:0.05, T:0.17
Consensus pattern (23 bp):
ACAACCAAATATACCTTCCAAAC
Found at i:32424457 original size:47 final size:49
Alignment explanation
Indices: 32424385--32424478 Score: 129
Period size: 47 Copynumber: 2.0 Consensus size: 49
32424375 CAACCACATG
* * *
32424385 TACCTTCTAGACACAACCAAATATACCCGCCAAACACAACCA-TATATT
1 TACCTTCGAGACAAAACCAAATATACCAGCCAAACACAACCACTATATT
* *
32424433 TACCTTCGA-ACAAAACCAAGTATACCATCCAAACACAACCACTATA
1 TACCTTCGAGACAAAACCAAATATACCAGCCAAACACAACCACTATA
32424479 CCCTTCAACC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 28 0.70
48 12 0.30
ACGTcount: A:0.44, C:0.33, G:0.04, T:0.19
Consensus pattern (49 bp):
TACCTTCGAGACAAAACCAAATATACCAGCCAAACACAACCACTATATT
Found at i:32424585 original size:15 final size:15
Alignment explanation
Indices: 32424567--32424597 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32424557 GAAATTTGGA
32424567 ATCATGGCCGATTCT
1 ATCATGGCCGATTCT
32424582 ATCATGGCCGATTCT
1 ATCATGGCCGATTCT
32424597 A
1 A
32424598 AATGAAGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (15 bp):
ATCATGGCCGATTCT
Found at i:32424731 original size:6 final size:6
Alignment explanation
Indices: 32424720--32424861 Score: 114
Period size: 6 Copynumber: 23.7 Consensus size: 6
32424710 ATAATAAAAT
* *
32424720 AAAACA AAAACA AAAATA AAAACA AAAACA AAAACA AAAA-A ATAAAAA
1 AAAACA AAAACA AAAACA AAAACA AAAACA AAAACA AAAACA A-AAACA
* * * * * *
32424768 ATAAAAA ATAAAAA AAAAGA AAAAGA AAAAAA AGAAATGA AAAAC- AAAAC-
1 A-AAACA A-AAACA AAAACA AAAACA AAAACA A-AAA-CA AAAACA AAAACA
* *
32424818 AAAAC- AAAACA AAAACA AAAACA AAAGCA AAAGC- AAAACA AAAA
1 AAAACA AAAACA AAAACA AAAACA AAAACA AAAACA AAAACA AAAA
32424862 ATAAAAATAA
Statistics
Matches: 122, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
5 21 0.17
6 77 0.63
7 22 0.18
8 2 0.02
ACGTcount: A:0.82, C:0.10, G:0.04, T:0.04
Consensus pattern (6 bp):
AAAACA
Done.