Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 106 of 292
Found at i:32424735 original size:1 final size:1
Alignment explanation
Indices: 32424715--32424843 Score: 69
Period size: 1 Copynumber: 129.0 Consensus size: 1
32424705 AATGCATAAT
* * * * * * * * * *
32424715 AAAATAAAACAAAAACAAAAATAAAAACAAAAACAAAAACAAAAAAATAAAAAATAAAAAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * ** * * * * * *
32424780 AAAAAAGAAAAAGAAAAAAAAGAAATGAAAAACAAAACAAAACAAAACAAAAACAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
32424844 GCAAAAGCAA
Statistics
Matches: 87, Mismatches: 41, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
1 87 1.00
ACGTcount: A:0.84, C:0.09, G:0.03, T:0.05
Consensus pattern (1 bp):
A
Found at i:32424816 original size:5 final size:5
Alignment explanation
Indices: 32424808--32424860 Score: 70
Period size: 5 Copynumber: 9.8 Consensus size: 5
32424798 AAAGAAATGA
32424808 AAAAC AAAAC AAAAC AAAAC AAAAAC AAAAAC AAAAGC AAAAGC AAAAC
1 AAAAC AAAAC AAAAC AAAAC -AAAAC -AAAAC AAAA-C AAAA-C AAAAC
32424857 AAAA
1 AAAA
32424861 AATAAAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
5 24 0.52
6 22 0.48
ACGTcount: A:0.79, C:0.17, G:0.04, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:32424844 original size:58 final size:57
Alignment explanation
Indices: 32424715--32424878 Score: 156
Period size: 58 Copynumber: 2.8 Consensus size: 57
32424705 AATGCATAAT
* * * * *
32424715 AAAATAAAACAAAAACAAAAA-TAAAAACAAAAACAAAAACAAAAAAATAAAAAATAA
1 AAAATAAAA-AAAAAGAAAAAGCAAAAAAAAAAATAAAAACAAAAAAATAAAAAACAA
*
32424772 AAAATAAAAAAAAAGAAAAAG-AAAAAAAAGAAATGAAAAACAAAACAAA-ACAAAACAA
1 AAAATAAAAAAAAAGAAAAAGCAAAAAAAA-AAAT-AAAAACAAAA-AAATAAAAAACAA
* * * *
32424830 AAACA-AAAACAAAAGCAAAAGCAAAACAAAAAATAAAAATAAATAAAAT
1 AAA-ATAAAAAAAAAGAAAAAGCAAAAAAAAAAATAAAAACAAA-AAAAT
32424879 CACTTTGGTT
Statistics
Matches: 90, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
56 17 0.19
57 23 0.26
58 39 0.43
59 11 0.12
ACGTcount: A:0.82, C:0.09, G:0.04, T:0.06
Consensus pattern (57 bp):
AAAATAAAAAAAAAGAAAAAGCAAAAAAAAAAATAAAAACAAAAAAATAAAAAACAA
Found at i:32424850 original size:64 final size:64
Alignment explanation
Indices: 32424712--32424862 Score: 159
Period size: 64 Copynumber: 2.4 Consensus size: 64
32424702 TATAATGCAT
* * * * *
32424712 AATAAAATAAAACAAAAACAAAAATAA-AAA-CAAAAACAAAAACAAAAAAATAAAAAATAAAA
1 AATAAAAAAAAAGAAAAACAAAAAAAAGAAATGAAAAACAAAAACAAAAAAATAAAAAACAAAA
*
32424774 AATAAAAAAAAAGAAAAAGAAAAAAAAGAAATGAAAAAC-AAAACAAAACAAA-ACAAAAACAAA
1 AATAAAAAAAAAGAAAAACAAAAAAAAGAAATGAAAAACAAAAACAAAA-AAATA-AAAAACAAA
32424837 A
64 A
** *
32424838 ACA-AAAGCAAAAGCAAAACAAAAAA
1 A-ATAAAAAAAAAGAAAAACAAAAAA
32424863 TAAAAATAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
62 23 0.31
63 13 0.18
64 37 0.50
65 1 0.01
ACGTcount: A:0.82, C:0.09, G:0.04, T:0.05
Consensus pattern (64 bp):
AATAAAAAAAAAGAAAAACAAAAAAAAGAAATGAAAAACAAAAACAAAAAAATAAAAAACAAAA
Found at i:32424867 original size:12 final size:11
Alignment explanation
Indices: 32424715--32424867 Score: 107
Period size: 11 Copynumber: 13.4 Consensus size: 11
32424705 AATGCATAAT
* *
32424715 AAAATAAAACA
1 AAAACAAAAAA
32424726 AAAACAAAAATA
1 AAAACAAAAA-A
32424738 AAAACAAAAACA
1 AAAACAAAAA-A
32424750 AAAACAAAAAA
1 AAAACAAAAAA
*
32424761 ATAAA-AAATAA
1 A-AAACAAAAAA
*
32424772 AAAATAAAAAA
1 AAAACAAAAAA
32424783 AAAGA-AAAAGAA
1 AAA-ACAAAA-AA
32424795 AAAA-AAGAAATGA
1 AAAACAA-AAA--A
*
32424808 AAAAC-AAAAC
1 AAAACAAAAAA
*
32424818 AAAACAAAACA
1 AAAACAAAAAA
32424829 AAAACAAAAACA
1 AAAACAAAAA-A
* **
32424841 AAAGCAAAAGC
1 AAAACAAAAAA
32424852 AAAACAAAAAA
1 AAAACAAAAAA
32424863 TAAAA
1 -AAAA
32424868 ATAAATAAAA
Statistics
Matches: 115, Mismatches: 15, Indels: 23
0.75 0.10 0.15
Matches are distributed among these distances:
10 8 0.07
11 52 0.45
12 49 0.43
13 6 0.05
ACGTcount: A:0.82, C:0.09, G:0.04, T:0.05
Consensus pattern (11 bp):
AAAACAAAAAA
Found at i:32426898 original size:30 final size:30
Alignment explanation
Indices: 32426864--32426930 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
32426854 CAAATTGAAC
*
32426864 CACACGGCAGGGCCACATGCCCGTGTCCCT
1 CACACGGCAGGGCCACACGCCCGTGTCCCT
* *
32426894 CACACGACCGGGCCACACGCCCGTGTCCCT
1 CACACGGCAGGGCCACACGCCCGTGTCCCT
32426924 CACACGG
1 CACACGG
32426931 TTGAGACACA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.18, C:0.46, G:0.25, T:0.10
Consensus pattern (30 bp):
CACACGGCAGGGCCACACGCCCGTGTCCCT
Found at i:32426929 original size:17 final size:17
Alignment explanation
Indices: 32426877--32426929 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
32426867 ACGGCAGGGC
*
32426877 CACATGCCCGTGTCCCT
1 CACACGCCCGTGTCCCT
* *
32426894 CACACGACCG-G--GC-
1 CACACGCCCGTGTCCCT
32426907 CACACGCCCGTGTCCCT
1 CACACGCCCGTGTCCCT
32426924 CACACG
1 CACACG
32426930 GTTGAGACAC
Statistics
Matches: 27, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
13 9 0.33
14 2 0.07
16 2 0.07
17 14 0.52
ACGTcount: A:0.17, C:0.49, G:0.21, T:0.13
Consensus pattern (17 bp):
CACACGCCCGTGTCCCT
Found at i:32441821 original size:21 final size:21
Alignment explanation
Indices: 32441795--32441837 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32441785 AAAAGACATC
*
32441795 TACAAATTAAATCTCCAAGAT
1 TACAAATCAAATCTCCAAGAT
* *
32441816 TACAAATCATATCTTCAAGAT
1 TACAAATCAAATCTCCAAGAT
32441837 T
1 T
32441838 GCATATCATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.33
Consensus pattern (21 bp):
TACAAATCAAATCTCCAAGAT
Found at i:32441856 original size:19 final size:19
Alignment explanation
Indices: 32441811--32441918 Score: 148
Period size: 19 Copynumber: 5.7 Consensus size: 19
32441801 TTAAATCTCC
* *
32441811 AAGATTACAAATCATATCTT
1 AAGATTGCATATCATATC-T
32441831 CAAGATTGCATATCATATCT
1 -AAGATTGCATATCATATCT
32441851 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
* *
32441870 AATATTG--TATTATATCT
1 AAGATTGCATATCATATCT
32441887 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
32441906 AAGATTGCATATC
1 AAGATTGCATATC
32441919 CTTAAAGATT
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.19
19 47 0.59
20 1 0.01
21 16 0.20
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:32441928 original size:36 final size:36
Alignment explanation
Indices: 32441811--32441918 Score: 119
Period size: 36 Copynumber: 2.9 Consensus size: 36
32441801 TTAAATCTCC
* *
32441811 AAGATTACAAATCATATCTTCAAGATTGCATATCATATCT
1 AAGATTGCATATCATATC-T-AAGATTGCATATCATA--T
* * *
32441851 AAGATTGCATATCATATCTAATATTGTATTAT-ATCT
1 AAGATTGCATATCATATCTAAGATTGCA-TATCATAT
32441887 AAGATTGCATATCATATCTAAGATTGCATATC
1 AAGATTGCATATCATATCTAAGATTGCATATC
32441919 CTTAAAGATT
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
35 3 0.05
36 27 0.46
38 9 0.15
39 4 0.07
40 16 0.27
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (36 bp):
AAGATTGCATATCATATCTAAGATTGCATATCATAT
Found at i:32444092 original size:39 final size:40
Alignment explanation
Indices: 32444034--32444134 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
32444024 AAATTGAATG
* *
32444034 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
32444073 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
32444113 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
32444135 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:32444127 original size:40 final size:40
Alignment explanation
Indices: 32444034--32444216 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
32444024 AAATTGAATG
* * * * *
32444034 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
32444073 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
32444113 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
32444153 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
32444193 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
32444217 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:32451971 original size:39 final size:40
Alignment explanation
Indices: 32451913--32452013 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
32451903 AAATTGAATG
* *
32451913 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
32451952 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
32451992 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
32452014 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:32452006 original size:40 final size:40
Alignment explanation
Indices: 32451913--32452095 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
32451903 AAATTGAATG
* * * * *
32451913 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
32451952 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
32451992 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
32452032 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
32452072 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
32452096 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:32455350 original size:21 final size:21
Alignment explanation
Indices: 32455308--32455350 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32455298 GCTGTTGAGA
* *
32455308 AGGAAGTTGCTGCTGCAGAAG
1 AGGAAGTTGCTGCTGAAAAAG
*
32455329 AGGAAGTTGTTGCTGAAAAAG
1 AGGAAGTTGCTGCTGAAAAAG
32455350 A
1 A
32455351 ATTTGCTGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.21
Consensus pattern (21 bp):
AGGAAGTTGCTGCTGAAAAAG
Found at i:32456707 original size:30 final size:30
Alignment explanation
Indices: 32456673--32456730 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
32456663 TTTTCGGTTA
* *
32456673 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
32456703 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
32456731 ATATAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:32457180 original size:47 final size:47
Alignment explanation
Indices: 32457070--32457338 Score: 158
Period size: 47 Copynumber: 5.7 Consensus size: 47
32457060 TGATTTGTGC
*** **
32457070 GCCAGTGTAAGACATGTCTGGGACAT-GTTTCGGCCACATTGTGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGGCAACGGCCACAGAGTGAGA
*
32457116 GCCAGTGTAAGACCATGTCTGGGACATGGCAACGG-CACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCAACGGCCACAGAG-TGAGA
* * * * * * *
32457164 GCCAGAGTAAGACATGTCTGGGACAT-GCATCGACCTCGACAGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGGCAACGGCCAC-AGAGTGAGA
** * * * * * *
32457211 GCCAGTGTAAGATGTGTTTGGGACA-CGCATCGGCTA-AGAGT-TGT
1 GCCAGTGTAAGACATGTCTGGGACATGGCAACGGCCACAGAGTGAGA
* * ** * *
32457255 GCTAGTGTAAGACATGTCTGGGACAT-GCATC-ATCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGGCAACGGCCAC-AG-A-GTGAGA
* *
32457303 GCCAGTATAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCAACGGC
32457339 AATATATCCC
Statistics
Matches: 167, Mismatches: 41, Indels: 25
0.72 0.18 0.11
Matches are distributed among these distances:
43 1 0.01
44 26 0.16
45 4 0.02
46 18 0.11
47 66 0.40
48 33 0.20
49 14 0.08
50 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGGCAACGGCCACAGAGTGAGA
Found at i:32457233 original size:94 final size:91
Alignment explanation
Indices: 32457070--32457328 Score: 245
Period size: 94 Copynumber: 2.8 Consensus size: 91
32457060 TGATTTGTGC
** * ** *
32457070 GCCAGTGTAAGACATGTCTGGGACATGTTTCGGCCACATTGTGAGAGCCAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACACAGAGAGAGCCAGTGTAAGACCATGTC
*
32457135 TGGGACATGGCAACGGC-ACAGAGATGAGT
66 TGGGACA-CGCAACGGCTA-AGAG-T-AGT
* * * **
32457164 GCCAGAGTAAGACATGTCTGGGACATGCATCGACCTCGACAGAGATAGCCAGTGTAAGA-TGTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCAC-ACAGAGAGAGCCAGTGTAAGACCATGT
* * *
32457228 TTGGGACACGCATCGGCTAAGAGTTGT
65 CTGGGACACGCAACGGCTAAGAGTAGT
* * * * *
32457255 GCTAGTGTAAGACATGTCTGGGACATGCATC-ATCACGCGTATATGAGAGCCAGTATAAGACCAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACAC--AGA-GAGAGCCAGTGTAAGACCAT
32457319 GTCTGGGACA
63 GTCTGGGACA
32457329 TGGCATCGGC
Statistics
Matches: 133, Mismatches: 26, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
89 1 0.01
90 3 0.02
91 33 0.25
92 15 0.11
93 21 0.16
94 43 0.32
95 17 0.13
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (91 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACACAGAGAGAGCCAGTGTAAGACCATGTC
TGGGACACGCAACGGCTAAGAGTAGT
Found at i:32457277 original size:44 final size:45
Alignment explanation
Indices: 32457070--32457285 Score: 177
Period size: 47 Copynumber: 4.7 Consensus size: 45
32457060 TGATTTGTGC
** * ** * *
32457070 GCCAGTGTAAGACATGTCTGGGACATGTTTCGGCCACATTGTGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGT-TGT
* *
32457116 GCCAGTGTAAGACCATGTCTGGGACATGGCAACGGC-ACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAGAG-T-TGT
* * * *
32457164 GCCAGAGTAAGACATGTCTGGGACATGCATCGACCTCGACAGAGAT-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCG-GCT--ACAGAGTTGT
** * *
32457211 GCCAGTGTAAGATGTGTTTGGGACACGCATCGGCTA-AGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGTTGT
*
32457255 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC
32457286 ATCACGCGTA
Statistics
Matches: 137, Mismatches: 25, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
43 5 0.04
44 27 0.20
46 19 0.14
47 60 0.44
48 20 0.15
50 6 0.04
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGTTGT
Found at i:32460091 original size:43 final size:43
Alignment explanation
Indices: 32460030--32460124 Score: 163
Period size: 43 Copynumber: 2.2 Consensus size: 43
32460020 GGAGGGGTCA
* * *
32460030 CACGCCCTTGTGCCCCAACCATGTCCCTTACACGGTAAAGTGG
1 CACGCCCGTATGCCCCAACCATGTCCCTTACACGGCAAAGTGG
32460073 CACGCCCGTATGCCCCAACCATGTCCCTTACACGGCAAAGTGG
1 CACGCCCGTATGCCCCAACCATGTCCCTTACACGGCAAAGTGG
32460116 CACGCCCGT
1 CACGCCCGT
32460125 GTCTCCGACC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.21, C:0.40, G:0.21, T:0.18
Consensus pattern (43 bp):
CACGCCCGTATGCCCCAACCATGTCCCTTACACGGCAAAGTGG
Found at i:32463276 original size:35 final size:35
Alignment explanation
Indices: 32463236--32463305 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
32463226 TAAGGCTCGT
32463236 GTCGACCTCTTGAGTCACAACACCTAAAAAATGTG
1 GTCGACCTCTTGAGTCACAACACCTAAAAAATGTG
32463271 GTCGACCTCTTGAGTCACAACACCTAAAAAATGTG
1 GTCGACCTCTTGAGTCACAACACCTAAAAAATGTG
32463306 ATAAAAATAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (35 bp):
GTCGACCTCTTGAGTCACAACACCTAAAAAATGTG
Found at i:32467501 original size:2 final size:2
Alignment explanation
Indices: 32467494--32467537 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
32467484 TGTCTTGTGC
32467494 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32467536 AT
1 AT
32467538 TGAATTAATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32470981 original size:48 final size:48
Alignment explanation
Indices: 32470910--32471238 Score: 523
Period size: 48 Copynumber: 7.0 Consensus size: 48
32470900 CAAGATAAAT
* *
32470910 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
32470958 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
32471006 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
32471054 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
32471102 ATATGTATATGTGGTAAAGCCGAATGACTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
32471150 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A---AT---
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
32471189 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
32471237 AT
1 AT
32471239 GTGTGTATAT
Statistics
Matches: 261, Mismatches: 11, Indels: 18
0.90 0.04 0.06
Matches are distributed among these distances:
39 34 0.13
41 1 0.00
42 3 0.01
45 2 0.01
46 1 0.00
48 220 0.84
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:32471194 original size:39 final size:39
Alignment explanation
Indices: 32471150--32471229 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
32471140 TATGTATGAG
32471150 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
32471189 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
32471228 AT
1 AT
32471230 GTAGGAGATG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.31
Consensus pattern (39 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:32471434 original size:37 final size:37
Alignment explanation
Indices: 32471384--32471483 Score: 173
Period size: 37 Copynumber: 2.7 Consensus size: 37
32471374 AATATATTCT
*
32471384 GGGTAAGACCCGATGACTACGAGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
32471421 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
32471458 GGGTAAGACCCGATAACTACGTGTGG
1 GGGTAAGACCCGATGACTACGTGTGG
32471484 GGACTATTCG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.23
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:32479690 original size:19 final size:19
Alignment explanation
Indices: 32479662--32479751 Score: 67
Period size: 19 Copynumber: 4.6 Consensus size: 19
32479652 ATTTTAAAAT
*
32479662 CAAGTGAAAATGA-TTTAA
1 CAAGTCAAAATGATTTTAA
* *
32479680 CCAAGTCAAAATGATCTCAA
1 -CAAGTCAAAATGATTTTAA
* * *
32479700 TTAAGTTAAAATCATTTTAA
1 -CAAGTCAAAATGATTTTAA
32479720 CACA-TCAAAATGATTTTCAAA
1 CA-AGTCAAAATGATTTT--AA
32479741 CAAGTCAAAAT
1 CAAGTCAAAAT
32479752 TGCTCTAGGC
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
19 24 0.44
20 19 0.35
21 11 0.20
ACGTcount: A:0.48, C:0.14, G:0.09, T:0.29
Consensus pattern (19 bp):
CAAGTCAAAATGATTTTAA
Found at i:32481040 original size:2 final size:2
Alignment explanation
Indices: 32481033--32481065 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
32481023 TGGGATAATG
32481033 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32481066 AATGTTTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32483858 original size:74 final size:74
Alignment explanation
Indices: 32483737--32483876 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 74
32483727 TATCCATCGA
* * * *
32483737 CAAAGCAAAAGTAAAACTCCCTTGCTCGTGCAGGGATTTGAACACAAGACCTTCAGCAAACCCAC
1 CAAAGCAAAAATAAAACTCCCTTGCTCGCGCAAGGATTTGAACACAAGACCTTCAACAAACCCAC
32483802 ATCAATCAG
66 ATCAATCAG
*
32483811 CAAAGCAAAAATAAAACT-CCTTCGCTCGCGCAAGGATTTGAACACAAGACCTTCAACAAACTCA
1 CAAAGCAAAAATAAAACTCCCTT-GCTCGCGCAAGGATTTGAACACAAGACCTTCAACAAACCCA
32483875 CA
65 CA
32483877 CTCCACCTAA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 4 0.07
74 56 0.93
ACGTcount: A:0.40, C:0.29, G:0.14, T:0.17
Consensus pattern (74 bp):
CAAAGCAAAAATAAAACTCCCTTGCTCGCGCAAGGATTTGAACACAAGACCTTCAACAAACCCAC
ATCAATCAG
Found at i:32486635 original size:25 final size:25
Alignment explanation
Indices: 32486601--32486649 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
32486591 CTCATACCAG
32486601 ATAGAATGGCTCAGGTAAATTTGTT
1 ATAGAATGGCTCAGGTAAATTTGTT
32486626 ATAGAATGGCTCAGGTAAATTTGT
1 ATAGAATGGCTCAGGTAAATTTGT
32486650 GTTTCTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (25 bp):
ATAGAATGGCTCAGGTAAATTTGTT
Found at i:32487123 original size:12 final size:12
Alignment explanation
Indices: 32487108--32487154 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
32487098 GAAAAAGGAA
32487108 GAAAAGAAAGAG
1 GAAAAGAAAGAG
*
32487120 GAAAAGAAAGAA
1 GAAAAGAAAGAG
*
32487132 GAGAAA-AACGAG
1 GA-AAAGAAAGAG
*
32487144 GAGAAGAAAGA
1 GAAAAGAAAGA
32487155 AGTCAAGGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
11 2 0.07
12 23 0.82
13 3 0.11
ACGTcount: A:0.66, C:0.02, G:0.32, T:0.00
Consensus pattern (12 bp):
GAAAAGAAAGAG
Found at i:32487124 original size:21 final size:21
Alignment explanation
Indices: 32487089--32487137 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
32487079 TAGGACCTGC
*
32487089 AAAAG-AAGAGAAAAAGGAAG
1 AAAAGAAAGAGAAAAAGAAAG
*
32487109 AAAAGAAAGAGGAAAAGAAAG
1 AAAAGAAAGAGAAAAAGAAAG
*
32487130 AAGAGAAA
1 AAAAGAAA
32487138 AACGAGGAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (21 bp):
AAAAGAAAGAGAAAAAGAAAG
Found at i:32487132 original size:24 final size:24
Alignment explanation
Indices: 32487105--32487156 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
32487095 AGAGAAAAAG
32487105 GAAGA-AAAGAAAGAGGAAAAGAAA
1 GAAGAGAAA-AAAGAGGAAAAGAAA
* *
32487129 GAAGAGAAAAACGAGGAGAAGAAA
1 GAAGAGAAAAAAGAGGAAAAGAAA
32487153 GAAG
1 GAAG
32487157 TCAAGGAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.65, C:0.02, G:0.33, T:0.00
Consensus pattern (24 bp):
GAAGAGAAAAAAGAGGAAAAGAAA
Found at i:32494445 original size:16 final size:16
Alignment explanation
Indices: 32494421--32494451 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32494411 TTATTTTTTT
32494421 AATTATTTGAATTAAA
1 AATTATTTGAATTAAA
*
32494437 AATTGTTTGAATTAA
1 AATTATTTGAATTAA
32494452 TACTAAATCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (16 bp):
AATTATTTGAATTAAA
Found at i:32496414 original size:20 final size:20
Alignment explanation
Indices: 32496389--32496453 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
32496379 AATTATTGTA
32496389 TGATTGCACATATGTGCCCT
1 TGATTGCACATATGTGCCCT
* * *
32496409 TGATTGTAC-TTTGGTACCGC-
1 TGATTGCACATAT-GTGCC-CT
32496429 TGATTGCACATATGTGCCCT
1 TGATTGCACATATGTGCCCT
32496449 TGATT
1 TGATT
32496454 ATACTTCGGT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
19 3 0.09
20 29 0.83
21 3 0.09
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (20 bp):
TGATTGCACATATGTGCCCT
Found at i:32496444 original size:40 final size:39
Alignment explanation
Indices: 32496389--32496647 Score: 209
Period size: 40 Copynumber: 6.5 Consensus size: 39
32496379 AATTATTGTA
*
32496389 TGATTGCACATATGTGCCCTTGATTGTACTTTGGTACCGC
1 TGATTGCACATATGTGCCCTTGATTATACTTTGGTACC-C
*
32496429 TGATTGCACATATGTGCCCTTGATTATACTTCGGTACCCC
1 TGATTGCACATATGTGCCCTTGATTATACTTTGGTA-CCC
* * * *
32496469 TGATTGCACATACGTGCCCCTGATTATACTTCGTTACCC
1 TGATTGCACATATGTGCCCTTGATTATACTTTGGTACCC
* * *
32496508 TTGATTGCACATACGTGTCCC-AGTTTATACTTTGGTACCCC
1 -TGATTGCACATATGTG-CCCTTGATTATACTTTGGTA-CCC
* * * * * *
32496549 TGTTTGTACATATGTACCCCT-ATTTGTACTTTGATACCC
1 TGATTGCACATATGTGCCCTTGA-TTATACTTTGGTACCC
* * * * * *
32496588 GTAATTGCACTTACGTG-CCTCTGACTGTACTTTGGCAACCC
1 -TGATTGCACATATGTGCCCT-TGATTATACTTTGG-TACCC
* *
32496629 TGAATGCACTTATGTGCCC
1 TGATTGCACATATGTGCCC
32496648 CTATTTTTAC
Statistics
Matches: 178, Mismatches: 30, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
39 11 0.06
40 152 0.85
41 15 0.08
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.36
Consensus pattern (39 bp):
TGATTGCACATATGTGCCCTTGATTATACTTTGGTACCC
Found at i:32496472 original size:20 final size:20
Alignment explanation
Indices: 32496449--32496513 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
32496439 TATGTGCCCT
32496449 TGATTATACTTCGGTACCCC
1 TGATTATACTTCGGTACCCC
** * *
32496469 TGATTGCACATAC-GTGCCCC
1 TGATTATAC-TTCGGTACCCC
* *
32496489 TGATTATACTTCGTTACCCT
1 TGATTATACTTCGGTACCCC
32496509 TGATT
1 TGATT
32496514 GCACATACGT
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
19 2 0.06
20 29 0.88
21 2 0.06
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.37
Consensus pattern (20 bp):
TGATTATACTTCGGTACCCC
Found at i:32496586 original size:20 final size:19
Alignment explanation
Indices: 32496535--32496587 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
32496525 TCCCAGTTTA
*
32496535 TACTTTGGTACCCCTGTTTG
1 TACTTT-GTACCCCTATTTG
*
32496555 TACATATGTACCCCTATTTG
1 TAC-TTTGTACCCCTATTTG
32496575 TACTTTGATACCC
1 TACTTTG-TACCC
32496588 GTAATTGCAC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 3 0.11
20 23 0.82
21 2 0.07
ACGTcount: A:0.19, C:0.26, G:0.13, T:0.42
Consensus pattern (19 bp):
TACTTTGTACCCCTATTTG
Found at i:32497879 original size:30 final size:30
Alignment explanation
Indices: 32497843--32497899 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
32497833 CCGAGACTAG
*
32497843 GGGCAAAAGTGTAATTATGCAAAAGTTTAC
1 GGGCAAAAATGTAATTATGCAAAAGTTTAC
* *
32497873 GGGCAAAAATGTAATTTTGCCAAAGTT
1 GGGCAAAAATGTAATTATGCAAAAGTT
32497900 CGTATTAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.28
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGCAAAAGTTTAC
Found at i:32504163 original size:24 final size:24
Alignment explanation
Indices: 32504136--32504182 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
32504126 GGCGTCCAGG
*
32504136 TATGAAATGTGAAATTTGTGAGTA
1 TATGAAATGTGAAATTTATGAGTA
32504160 TATGAAATGTGAAATTTATGAGT
1 TATGAAATGTGAAATTTATGAGT
32504183 TCGTAGCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (24 bp):
TATGAAATGTGAAATTTATGAGTA
Found at i:32506363 original size:34 final size:34
Alignment explanation
Indices: 32506307--32506379 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
32506297 TATGTTGTAT
32506307 TGAAATAGGCTAAGACCCAGACTGCCACTGATAC
1 TGAAATAGGCTAAGACCCAGACTGCCACTGATAC
* * * * ** *
32506341 TGAAATGGGCTCAGGCCTAGACTGTTACTGCTAC
1 TGAAATAGGCTAAGACCCAGACTGCCACTGATAC
32506375 TGAAA
1 TGAAA
32506380 GAGGGGCTAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (34 bp):
TGAAATAGGCTAAGACCCAGACTGCCACTGATAC
Found at i:32517944 original size:18 final size:19
Alignment explanation
Indices: 32517921--32517956 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
32517911 GTTTGGGTAC
*
32517921 TGTTTAGCCGCCA-AGAGG
1 TGTTTAGCAGCCACAGAGG
32517939 TGTTTAGCAGCCACAGAG
1 TGTTTAGCAGCCACAGAG
32517957 AGGCCGTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (19 bp):
TGTTTAGCAGCCACAGAGG
Found at i:32525551 original size:2 final size:2
Alignment explanation
Indices: 32525544--32525569 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32525534 GTTTTGGACG
32525544 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
32525570 GTACAACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32525936 original size:2 final size:2
Alignment explanation
Indices: 32525929--32525956 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32525919 TTAGTAATAA
32525929 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32525957 CTTATAAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32526568 original size:81 final size:82
Alignment explanation
Indices: 32526378--32526571 Score: 302
Period size: 81 Copynumber: 2.4 Consensus size: 82
32526368 TTGGGGTTTA
* *
32526378 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCCAAGCTTGGTCTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCCAAGCCTAGTCTCGAAGGGC
* * *
32526443 TTTTGAGCCAGTGTCAT
66 CTTCGAGCCAATGTCAT
*
32526460 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAA-CCGAA-CCTAGTTTCGAAGGG
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCC-AAGCCTAGTCTCGAAGGG
*
32526523 CCTTCGGGCCAATGTCAT
65 CCTTCGAGCCAATGTCAT
32526541 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAG
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAG
32526572 TCAGCGCTAA
Statistics
Matches: 104, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
81 59 0.57
82 45 0.43
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (82 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCCAAGCCTAGTCTCGAAGGGC
CTTCGAGCCAATGTCAT
Found at i:32526595 original size:41 final size:41
Alignment explanation
Indices: 32526378--32526571 Score: 300
Period size: 41 Copynumber: 4.8 Consensus size: 41
32526368 TTGGGGTTTA
32526378 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
32526419 AATCCAAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
32526460 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
32526501 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
32526541 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAG
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAG
32526572 TCAGCGCTAA
Statistics
Matches: 135, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 32 0.24
41 103 0.76
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:32533844 original size:2 final size:2
Alignment explanation
Indices: 32533837--32533868 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
32533827 GTTTTGGACG
32533837 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32533869 GTACAACTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32534719 original size:41 final size:41
Alignment explanation
Indices: 32534662--32534852 Score: 269
Period size: 41 Copynumber: 4.7 Consensus size: 41
32534652 TTGGGGTTTA
*
32534662 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAACCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
32534703 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTTAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
32534744 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTTAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * *
32534785 AA-CCGAACCTAGTTTCGAAGGGC-CTTCAGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGA-GCCAGTGTCAT
32534825 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
32534853 TGAGTCAGCG
Statistics
Matches: 132, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 3 0.02
40 28 0.21
41 99 0.75
42 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:32534850 original size:81 final size:82
Alignment explanation
Indices: 32534662--32534852 Score: 269
Period size: 81 Copynumber: 2.3 Consensus size: 82
32534652 TTGGGGTTTA
* * *
32534662 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAACCAGTGTCATAATCCGAGCTTGGTCTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAACCAGTGTCATAATCCGAACCTAGTCTCGAAGGGC
** * *
32534727 TTTTGAGCCAGTGTTAT
66 TTCAGAGCCAATGTCAT
* * *
32534744 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTTATAA-CCGAACCTAGTTTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAACCAGTGTCATAATCCGAACCTAGTCTCGAAGGG-
32534808 CTTCAG-GCCAATGTCAT
65 CTTCAGAGCCAATGTCAT
32534825 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
32534853 TGAGTCAGCG
Statistics
Matches: 98, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
81 53 0.54
82 45 0.46
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.29
Consensus pattern (82 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAACCAGTGTCATAATCCGAACCTAGTCTCGAAGGGC
TTCAGAGCCAATGTCAT
Found at i:32544499 original size:9 final size:9
Alignment explanation
Indices: 32544485--32544510 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32544475 ATAGTGAATA
32544485 ACTTTTACT
1 ACTTTTACT
32544494 ACTTTTACT
1 ACTTTTACT
32544503 ACTTTTAC
1 ACTTTTAC
32544511 AATTTAATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (9 bp):
ACTTTTACT
Found at i:32564255 original size:29 final size:29
Alignment explanation
Indices: 32564222--32564382 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
32564212 CCTCCGAACT
** * * *
32564222 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
32564251 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32564280 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32564309 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32564338 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32564367 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32564383 ATCTCGTCAC
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:32564284 original size:87 final size:87
Alignment explanation
Indices: 32564164--32564382 Score: 244
Period size: 87 Copynumber: 2.5 Consensus size: 87
32564154 TACTCGATTT
** * * ** * *
32564164 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATA-CCCTCCGAACTCGCAC
1 CGCACACTTAGTGCCAAAT-ATTTCCAGCACGCACACTTAGTGCCATATACCTCC-AACACGCAC
* * *
32564227 ACCCAGTGCCGTATTTTTCCAGCT
64 ACCCAGTGCCATATATTTCCAGCA
* ** *
32564251 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACAC
**
32564316 TTAGTGCCATATATTTCCAGCA
66 CCAGTGCCATATATTTCCAGCA
*
32564338 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCA
32564383 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
86 4 0.04
87 104 0.94
88 3 0.03
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.25
Consensus pattern (87 bp):
CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACAC
CCAGTGCCATATATTTCCAGCA
Found at i:32566547 original size:112 final size:112
Alignment explanation
Indices: 32566350--32566574 Score: 432
Period size: 112 Copynumber: 2.0 Consensus size: 112
32566340 AAATCAGAGG
*
32566350 TTAGAGCACTTGCTAGAACCTACGCTATTCTCGCTCACGATGATGCATCATCCACTGATGTTATC
1 TTAGAGCACTTGCTAGAACCTACGCTATTCGCGCTCACGATGATGCATCATCCACTGATGTTATC
32566415 ACTGGTACATTTTCTCTCCATGAAACTAATGTAGTTGCATTGATTGA
66 ACTGGTACATTTTCTCTCCATGAAACTAATGTAGTTGCATTGATTGA
*
32566462 TTAGAGCACTTGCTAGAACCTACGGTATTCGCGCTCACGATGATGCATCATCCACTGATGTTATC
1 TTAGAGCACTTGCTAGAACCTACGCTATTCGCGCTCACGATGATGCATCATCCACTGATGTTATC
32566527 ACTGGTACATTTTCTCTCCATGAAACTAATGTAGTTGCATTGATTGA
66 ACTGGTACATTTTCTCTCCATGAAACTAATGTAGTTGCATTGATTGA
32566574 T
1 T
32566575 CCTGGATCGA
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
112 111 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (112 bp):
TTAGAGCACTTGCTAGAACCTACGCTATTCGCGCTCACGATGATGCATCATCCACTGATGTTATC
ACTGGTACATTTTCTCTCCATGAAACTAATGTAGTTGCATTGATTGA
Found at i:32575319 original size:20 final size:20
Alignment explanation
Indices: 32575283--32575320 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32575273 TGTTTAAACT
*
32575283 TCATTCTAATCTAATTCTCA
1 TCATTCTAATCGAATTCTCA
32575303 TCATTC-AATCGACATTCT
1 TCATTCTAATCGA-ATTCT
32575321 AAATTTACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.29, C:0.26, G:0.03, T:0.42
Consensus pattern (20 bp):
TCATTCTAATCGAATTCTCA
Found at i:32575498 original size:13 final size:13
Alignment explanation
Indices: 32575480--32575505 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32575470 ATAAAAATTT
32575480 GATGAGAATTTAA
1 GATGAGAATTTAA
32575493 GATGAGAATTTAA
1 GATGAGAATTTAA
32575506 TAATATAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (13 bp):
GATGAGAATTTAA
Found at i:32581136 original size:2 final size:2
Alignment explanation
Indices: 32581129--32581162 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
32581119 ACTATGGAAA
32581129 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32581163 GATCGGTTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32585901 original size:42 final size:42
Alignment explanation
Indices: 32585853--32585933 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
32585843 CCGAGACTAG
**
32585853 GTGTAAGACCATATCTAAGATATGACATCATTATGAAATTTC
1 GTGTAAGACCATATCTAAGATATGACATCAAAATGAAATTTC
* *
32585895 GTGTAAGACCATATCTGAGATATGGCATCAAAATGAAAT
1 GTGTAAGACCATATCTAAGATATGACATCAAAATGAAAT
32585934 CCCATATAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTAAGATATGACATCAAAATGAAATTTC
Found at i:32585944 original size:42 final size:42
Alignment explanation
Indices: 32585856--32585950 Score: 118
Period size: 42 Copynumber: 2.3 Consensus size: 42
32585846 AGACTAGGTG
** ** * *
32585856 TAAGACCATATCTAAGATATGACATCATTATGAAATTTCGTG
1 TAAGACCATATCTAAGATATGACATCAAAATGAAATCCCATA
* *
32585898 TAAGACCATATCTGAGATATGGCATCAAAATGAAATCCCATA
1 TAAGACCATATCTAAGATATGACATCAAAATGAAATCCCATA
32585940 TAAGACCATAT
1 TAAGACCATAT
32585951 TTGGGTTATG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (42 bp):
TAAGACCATATCTAAGATATGACATCAAAATGAAATCCCATA
Found at i:32587410 original size:15 final size:17
Alignment explanation
Indices: 32587359--32587416 Score: 80
Period size: 17 Copynumber: 3.3 Consensus size: 17
32587349 TCGTGTGGTT
* *
32587359 CACCCGTGAAGGCCCATA
1 CACCCGTG-TGGCCCACA
32587377 CACCCGTGTGGCCCACA
1 CACCCGTGTGGCCCACA
32587394 CACCCGTGTGGCCCACA
1 CACCCGTGTGGCCCACA
32587411 CGACCC
1 C-ACCC
32587417 ACTTCGGTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
17 25 0.68
18 12 0.32
ACGTcount: A:0.21, C:0.47, G:0.22, T:0.10
Consensus pattern (17 bp):
CACCCGTGTGGCCCACA
Found at i:32590116 original size:16 final size:16
Alignment explanation
Indices: 32590095--32590125 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32590085 GTTTAGGGGA
32590095 AAAAATATAATTTTTC
1 AAAAATATAATTTTTC
*
32590111 AAAAATATGATTTTT
1 AAAAATATAATTTTT
32590126 GGTTCAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (16 bp):
AAAAATATAATTTTTC
Found at i:32596652 original size:46 final size:46
Alignment explanation
Indices: 32596601--32596774 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
32596591 ACATCTCGTA
*
32596601 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTTATGTCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTTGAG
* ** *
32596647 GCCGATACATGTCCCAGACATGTCTTACACTAGC--ACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTA-T-GTCTTGAG
* * * ** *
32596693 GCCGATGCCATATCCCAGACATGTCTTATACTGGCTCTCA--TAATGTG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCT-T-ATGTCTTGAG
32596740 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
32596775 CACGCAAGTG
Statistics
Matches: 103, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 68 0.66
47 32 0.31
51 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTTGAG
Found at i:32596717 original size:93 final size:92
Alignment explanation
Indices: 32596566--32596773 Score: 237
Period size: 93 Copynumber: 2.3 Consensus size: 92
32596556 TTGATGCCAC
* *
32596566 GTCCCAGACATGGTCTTACACT-G-ACACATCTCGTAGCCGATGCATGTCCCAAACATGTCTTAC
1 GTCCCAGACAT-GTCTTACACTAGCACACATCTCATAGCCGATGCATATCCCAAACATGTCTTAC
**
32596629 ACTAGCT-T-ATGTCTTGAGGCCGATACAT
65 ACTAGCTCTCA--TAATGAGGCCGATACAT
* * *
32596657 GTCCCAGACATGTCTTACACTAGCACTCGTCTCA-ATGCCGATGCCATATCCCAGACATGTCTTA
1 GTCCCAGACATGTCTTACACTAGCACACATCTCATA-GCCGATG-CATATCCCAAACATGTCTTA
* * * *
32596721 TACTGGCTCTCATAATGTGGCCGATGCAT
64 CACTAGCTCTCATAATGAGGCCGATACAT
32596750 GTCCCAGACATGTCTTACACTAGC
1 GTCCCAGACATGTCTTACACTAGC
32596774 TCACGCAAGT
Statistics
Matches: 100, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
90 10 0.10
91 13 0.13
92 14 0.14
93 61 0.61
94 1 0.01
95 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (92 bp):
GTCCCAGACATGTCTTACACTAGCACACATCTCATAGCCGATGCATATCCCAAACATGTCTTACA
CTAGCTCTCATAATGAGGCCGATACAT
Found at i:32603057 original size:20 final size:18
Alignment explanation
Indices: 32603023--32603059 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
32603013 GCAACTCATA
32603023 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
32603041 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
32603060 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:32605820 original size:43 final size:43
Alignment explanation
Indices: 32605773--32605943 Score: 281
Period size: 43 Copynumber: 4.0 Consensus size: 43
32605763 TCGGGCTGCT
* * *
32605773 ACATCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGATTAC
1 ACATCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATAC
32605816 ACATCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATAC
1 ACATCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATAC
*
32605859 ACATCACCGGCAAGAAGCCTGCTAGGCACGAAGGCCCGAATAC
1 ACATCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATAC
*
32605902 ACATCACCGGCACT-AAGCCTGCTAGGCACAAAGGCCCGAATA
1 ACATCACCGGCA-TGAAGCCTGCTAGGCACGAAGGCCCGAATA
32605944 TAATACCAGT
Statistics
Matches: 121, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
43 121 1.00
ACGTcount: A:0.30, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
ACATCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATAC
Found at i:32605981 original size:38 final size:38
Alignment explanation
Indices: 32605936--32606019 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
32605926 GGCACAAAGG
* * * *
32605936 CCCGAATATAATACCAGTACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
32605974 CTCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
32606012 CCCGAATA
1 CCCGAATA
32606020 CACATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:32611383 original size:38 final size:38
Alignment explanation
Indices: 32611332--32611416 Score: 109
Period size: 38 Copynumber: 2.2 Consensus size: 38
32611322 AGGCACGAAG
*
32611332 GCTCGAATATAATACCAGCACT-AGGCCTGCAGGATTTA
1 GCTCGAATATAATACCAGCA-TGAAGCCTGCAGGATTTA
* *
32611370 GCTCGGATATAATACCAGCATGAAGCCTGCGGGATTTA
1 GCTCGAATATAATACCAGCATGAAGCCTGCAGGATTTA
* *
32611408 ACTCTAATA
1 GCTCGAATA
32611417 CACATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
37 1 0.03
38 39 0.98
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (38 bp):
GCTCGAATATAATACCAGCATGAAGCCTGCAGGATTTA
Found at i:32620299 original size:39 final size:39
Alignment explanation
Indices: 32620256--32620383 Score: 157
Period size: 39 Copynumber: 3.3 Consensus size: 39
32620246 GGTCTTTAAC
**
32620256 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCAAGT
* * ** * *
32620295 CCGGATATATTTCTAGCATATAGCCTATGGATCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCAAGT
* * *
32620334 TCAGATATTTTTCCAGCATATAGCCTGCGGACCTCACGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCAAGT
32620373 CCGGATATTTT
1 CCGGATATTTT
32620384 CAATCTCATA
Statistics
Matches: 71, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.32
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCAAGT
Found at i:32636266 original size:39 final size:39
Alignment explanation
Indices: 32636220--32636347 Score: 184
Period size: 39 Copynumber: 3.3 Consensus size: 39
32636210 GGTCTTTAAC
** *
32636220 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
** * * *
32636259 CTAGATATATTTCTAGCATATAGCCTGCGGATCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
32636298 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
32636337 CCGGATATTTT
1 CCGGATATTTT
32636348 CAATCTCATA
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:32638267 original size:27 final size:28
Alignment explanation
Indices: 32638236--32638335 Score: 107
Period size: 27 Copynumber: 3.7 Consensus size: 28
32638226 ATATTGCTTG
* *
32638236 TAAAATTACTAAAATACCCTTTGTTT-A
1 TAAAATTACTAAAATACCCATGGTTTGA
*
32638263 TAAAATTACCAAAATACCCATGGTTTGA
1 TAAAATTACTAAAATACCCATGGTTTGA
* ** *
32638291 -AAAATTACTAAAATACCCCT-GTAAGG
1 TAAAATTACTAAAATACCCATGGTTTGA
*
32638317 TAAAATTACTGAAATACCC
1 TAAAATTACTAAAATACCC
32638336 TTGTGGGGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.05
27 58 0.94
28 1 0.02
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (28 bp):
TAAAATTACTAAAATACCCATGGTTTGA
Found at i:32638345 original size:27 final size:27
Alignment explanation
Indices: 32638235--32638352 Score: 89
Period size: 27 Copynumber: 4.4 Consensus size: 27
32638225 CATATTGCTT
* *
32638235 GTAAAATTACTAAAATACCCTTTGTTTA-
1 GTAAAATTACTAAAATACCC-CTG-TAAG
* * **
32638263 -TAAAATTACCAAAATACCCATGGT-TT
1 GTAAAATTACTAAAATACCCCT-GTAAG
*
32638289 GAAAAATTACTAAAATACCCCTGTAAG
1 GTAAAATTACTAAAATACCCCTGTAAG
* * **
32638316 GTAAAATTACTGAAATACCCTTGTGGG
1 GTAAAATTACTAAAATACCCCTGTAAG
32638343 GTAAAATTAC
1 GTAAAATTAC
32638353 CATTTTGCCC
Statistics
Matches: 73, Mismatches: 13, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
26 4 0.05
27 69 0.95
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.31
Consensus pattern (27 bp):
GTAAAATTACTAAAATACCCCTGTAAG
Found at i:32639005 original size:28 final size:28
Alignment explanation
Indices: 32638973--32639031 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
32638963 GCGTAGATCA
32638973 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
32639001 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
32639029 CGA
1 CGA
32639032 TATACCTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:32643095 original size:14 final size:13
Alignment explanation
Indices: 32643072--32643103 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
32643062 GGAATATCAA
32643072 AACAATAATTAAG
1 AACAATAATTAAG
32643085 AACACATAATTAAG
1 AACA-ATAATTAAG
32643099 AACAA
1 AACAA
32643104 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:32645510 original size:47 final size:47
Alignment explanation
Indices: 32645424--32645515 Score: 139
Period size: 47 Copynumber: 2.0 Consensus size: 47
32645414 AAGCTCCCAA
* ***
32645424 TAGCTATGATATCTATAAAACAATTGAAAACATGTGCAAAGTAAGTT
1 TAGCTACGATATCTATAAAACAATTGAAAACACACGCAAAGTAAGTT
*
32645471 TAGCTACGATATCTATAAAATAATTGAAAACACACGCAAAGTAAG
1 TAGCTACGATATCTATAAAACAATTGAAAACACACGCAAAGTAAG
32645516 CTTTCAAAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.47, C:0.13, G:0.14, T:0.26
Consensus pattern (47 bp):
TAGCTACGATATCTATAAAACAATTGAAAACACACGCAAAGTAAGTT
Found at i:32649387 original size:6 final size:6
Alignment explanation
Indices: 32649376--32649409 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
32649366 GGAAGCCCTC
32649376 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
32649410 AAGGAATTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:32649761 original size:50 final size:49
Alignment explanation
Indices: 32649649--32649833 Score: 195
Period size: 49 Copynumber: 3.8 Consensus size: 49
32649639 GAGTTACTGT
* * * *
32649649 GAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCG-TGAAGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATGACG-A
32649696 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-GAAT-ATGCGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG-ATGA--CGA
* *
32649745 GAGCCTA-TGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGACGA
1 GAGCC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATGACGA
* * *
32649794 TAGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
32649834 TATACCCTAT
Statistics
Matches: 116, Mismatches: 11, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
46 12 0.10
47 14 0.12
48 11 0.09
49 38 0.33
50 38 0.33
51 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATGACGA
Found at i:32649811 original size:99 final size:96
Alignment explanation
Indices: 32649656--32649833 Score: 268
Period size: 99 Copynumber: 1.8 Consensus size: 96
32649646 TGTGAGCTAG
* * *
32649656 TGTAAGACATGTTTGGGACATGCATCGGCCTCGTGAAGTAAGCCAGTGTAAGACCATGTCTGGGA
1 TGTAAGACATGTCTGGGACATGCATCAGCCTCGTGAAGTAAGCCAGTGTAAGACCATGTCTAGGA
32649721 CATGGCATCGGCATGAATATGCGAGAGCCTA
66 CATGGCATCGGCATGAATATGCGAGAGCCTA
* *
32649752 TGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGACG-ATAGTCAGTGTAAGACCATGTCT
1 TGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCG-TGAAGTA-AGCCAGTGTAAGACCATGTCT
32649816 AGGACATGGCATCGGCAT
62 AGGACATGGCATCGGCAT
32649834 TATACCCTAT
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
96 7 0.10
97 13 0.18
98 12 0.16
99 41 0.56
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (96 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCTCGTGAAGTAAGCCAGTGTAAGACCATGTCTAGGA
CATGGCATCGGCATGAATATGCGAGAGCCTA
Found at i:32649824 original size:49 final size:49
Alignment explanation
Indices: 32649654--32649831 Score: 199
Period size: 50 Copynumber: 3.7 Consensus size: 49
32649644 ACTGTGAGCT
* *
32649654 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCG-TGAAG-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGACGAT-AGCC
* *
32649700 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-GAAT-ATGCGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG-ATGA--CGATAGCC
* *
32649750 TA-TGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGACGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGACGATAGCC
*
32649799 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
32649832 ATTATACCCT
Statistics
Matches: 111, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
46 9 0.08
47 14 0.13
48 11 0.10
49 36 0.32
50 38 0.34
51 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGACGATAGCC
Found at i:32654065 original size:99 final size:97
Alignment explanation
Indices: 32653893--32654079 Score: 268
Period size: 99 Copynumber: 1.9 Consensus size: 97
32653883 ATCTGGTACG
* * *
32653893 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACT
*
32653958 TAGTACTACACACGTGACCTCACCATCTAATA
66 TAGTACTACACACGCGACCTCACCATCTAATA
* * *
32653990 CATAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGC
*
32654054 ACTTAGTACTACACATGCGACCTCAC
63 ACTTAGTACTACACACGCGACCTCAC
32654080 AATAGATCAT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
96 4 0.05
97 32 0.41
99 43 0.54
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (97 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACT
TAGTACTACACACGCGACCTCACCATCTAATA
Found at i:32654066 original size:51 final size:48
Alignment explanation
Indices: 32653884--32654068 Score: 214
Period size: 49 Copynumber: 3.8 Consensus size: 48
32653874 GCCGAAGCTA
* *
32653884 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC-ACAG
* *
32653933 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CA-CAG
** *
32653983 TCTAATA--CATAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCACAG
*
32654029 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 ---TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACA
32654069 TGCGACCTCA
Statistics
Matches: 116, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
45 2 0.02
46 2 0.02
48 32 0.28
49 42 0.36
50 7 0.06
51 31 0.27
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (48 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCACAG
Found at i:32655975 original size:49 final size:51
Alignment explanation
Indices: 32655911--32656040 Score: 149
Period size: 51 Copynumber: 2.6 Consensus size: 51
32655901 TCTGGTACGA
* *
32655911 ATAGTAGCCTACACTTAGTACTATACATGCGA-C-CAACAGTTT-GGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGCGATCACAA-AGTTTGGGTACAC
* * * * ** *
32655960 GTAGTAGCCTGCACTTAGTACTACAGACGTGATCACAATTTTTGGGTACGC
1 ATAGTAGCCTGCACTTAGTACTACACATGCGATCACAAAGTTTGGGTACAC
32656011 ATAGTAGCCTGCACTTAGTACTACACATGC
1 ATAGTAGCCTGCACTTAGTACTACACATGC
32656041 AACCTCACAA
Statistics
Matches: 65, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
49 26 0.40
50 4 0.06
51 35 0.54
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (51 bp):
ATAGTAGCCTGCACTTAGTACTACACATGCGATCACAAAGTTTGGGTACAC
Found at i:32659812 original size:50 final size:50
Alignment explanation
Indices: 32659683--32659879 Score: 222
Period size: 50 Copynumber: 3.9 Consensus size: 50
32659673 GCCGAAGCTA
* * * *
32659683 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAACAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACTCACCAG
*
32659732 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CTCACCAG
** *
32659782 TCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TCA-CAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACTCACCAG
* * * *
32659830 TTTTCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTCAC
1 -TCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CTCAC
32659880 AATAGATCAT
Statistics
Matches: 126, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
47 2 0.02
48 3 0.02
49 40 0.32
50 74 0.59
51 4 0.03
52 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACTCACCAG
Found at i:32659866 original size:100 final size:99
Alignment explanation
Indices: 32659694--32659879 Score: 275
Period size: 100 Copynumber: 1.9 Consensus size: 99
32659684 CTGGTACGCA
* *
32659694 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCTGGTACACATAGTAGCCTGCACTTA
*
32659759 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * * *
32659793 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG-TCT-GGTACACATAGTAGCCTGCACT
*
32659857 TAGTACTACACATGCGACCTCAC
64 TAGTACTACACACGCGACCTCAC
32659880 AATAGATCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
98 4 0.05
99 32 0.42
100 41 0.53
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCTGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:32663692 original size:50 final size:49
Alignment explanation
Indices: 32663583--32663757 Score: 176
Period size: 50 Copynumber: 3.5 Consensus size: 49
32663573 CTGGTACGCA
* * **
32663583 TAGTAGCCTG-ACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
* *
32663631 TAGTTGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* * * * * *
32663681 TAGTAGACTGCACTTAGTACTACACACGTGATC-ACAGTTTTCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG-TCT-A-ATACACG
32663732 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
32663758 TGCGACCTCA
Statistics
Matches: 105, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
47 2 0.02
48 10 0.10
49 20 0.19
50 40 0.38
51 33 0.31
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:32665695 original size:50 final size:49
Alignment explanation
Indices: 32665585--32665760 Score: 176
Period size: 50 Copynumber: 3.5 Consensus size: 49
32665575 CTGGTACGCA
* * * **
32665585 TAGTAGCCTGAACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
* *
32665634 TAGTTGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* * * * * *
32665684 TAGTAGACTGCACTTAGTACTACACACGTGATC-ACAGTTTTCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG-TCT-A-ATACACG
32665735 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
32665761 TGCGACCTCA
Statistics
Matches: 105, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 29 0.28
50 40 0.38
51 33 0.31
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:32667705 original size:50 final size:49
Alignment explanation
Indices: 32667595--32667770 Score: 176
Period size: 50 Copynumber: 3.5 Consensus size: 49
32667585 CTGGTACGCA
* * * **
32667595 TAGTAGCCTGAACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
* *
32667644 TAGTTGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* * * * * *
32667694 TAGTAGACTGCACTTAGTACTACACACGTGATC-ACAGTTTTCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG-TCT-A-ATACACG
32667745 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
32667771 TGCGACCTCA
Statistics
Matches: 105, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 29 0.28
50 40 0.38
51 33 0.31
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:32671768 original size:13 final size:13
Alignment explanation
Indices: 32671750--32671775 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32671740 CTGTGCATTT
32671750 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
32671763 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
32671776 AACAAATACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:32675286 original size:13 final size:13
Alignment explanation
Indices: 32675268--32675292 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32675258 AACGAAGTAG
32675268 GACACGGCCGTGC
1 GACACGGCCGTGC
32675281 GACACGGCCGTG
1 GACACGGCCGTG
32675293 TGCACCAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:32684299 original size:29 final size:29
Alignment explanation
Indices: 32684264--32684337 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
32684254 GTTGTGAGAT
* *
32684264 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
32684293 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
32684322 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32684338 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:32688086 original size:43 final size:44
Alignment explanation
Indices: 32688038--32688183 Score: 151
Period size: 43 Copynumber: 3.4 Consensus size: 44
32688028 AGATATCGTG
* *
32688038 TAAGACCGTGTCTGGGACACAGGCCTCG-ATTGAGATTTACGTA
1 TAAGACCATGTCTGGGACACAGGCATCGTATTGAGATTTACGTA
** *
32688081 TAAGACCATGTCTGGGACATTGGCATCGTATT-TGATTTCACG--
1 TAAGACCATGTCTGGGACACAGGCATCGTATTGAGATTT-ACGTA
* * *
32688123 TAAGACCCTGTCTGGGACAGAGGCATCAGTATTGA-A-TTACATA
1 TAAGACCATGTCTGGGACACAGGCATC-GTATTGAGATTTACGTA
*
32688166 TAAGACCACGTCTGGGAC
1 TAAGACCATGTCTGGGAC
32688184 GTCGACATTG
Statistics
Matches: 85, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
41 2 0.02
42 26 0.31
43 51 0.60
44 6 0.07
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (44 bp):
TAAGACCATGTCTGGGACACAGGCATCGTATTGAGATTTACGTA
Found at i:32694960 original size:2 final size:2
Alignment explanation
Indices: 32694953--32694986 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
32694943 AGTATAGTTG
* *
32694953 AT AT AT AT AT AT AT AT AT AT AT AG AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32694987 TCGGCCATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (2 bp):
AT
Found at i:32695661 original size:29 final size:29
Alignment explanation
Indices: 32695626--32695699 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
32695616 GTTGTGAGAT
* *
32695626 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
32695655 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
32695684 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32695700 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:32699617 original size:29 final size:29
Alignment explanation
Indices: 32699584--32699715 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
32699574 GTGACGAGAT
*
32699584 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
32699613 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
32699642 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
32699671 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
32699700 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32699716 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:32702692 original size:43 final size:44
Alignment explanation
Indices: 32702644--32702789 Score: 158
Period size: 43 Copynumber: 3.4 Consensus size: 44
32702634 AGATATCGTG
* * *
32702644 TAAGACCGTGTCTGGGACACAGGCCTCG-ATTGAGATTTACGTA
1 TAAGACCATGTCTGGGACACAGGCATCGTATTGAGATTTACATA
** * *
32702687 TAAGACCATGTCTGGGACATTGGCATCGTATT-TGATTT-CATG
1 TAAGACCATGTCTGGGACACAGGCATCGTATTGAGATTTACATA
* *
32702729 TAAGACCCTGTCTGGGACAGAGGCATCAGTATTGA-A-TTACATA
1 TAAGACCATGTCTGGGACACAGGCATC-GTATTGAGATTTACATA
*
32702772 TAAGACCACGTCTGGGAC
1 TAAGACCATGTCTGGGAC
32702790 GTCGACATTG
Statistics
Matches: 85, Mismatches: 14, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
42 28 0.33
43 54 0.64
44 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (44 bp):
TAAGACCATGTCTGGGACACAGGCATCGTATTGAGATTTACATA
Found at i:32707339 original size:46 final size:46
Alignment explanation
Indices: 32707272--32707447 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
32707262 TGTAACCCAC
* *
32707272 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
32707318 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTCGCAT
* * *
32707368 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
32707411 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
32707448 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 60 0.56
47 27 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:32707392 original size:93 final size:93
Alignment explanation
Indices: 32707279--32707450 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
32707269 CACCCATAAG
* * *
32707279 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32707344 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
*
32707372 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
32707437 ACGAGTTCGGATGC
66 ACGAGTTCAGATGC
32707451 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:32711511 original size:27 final size:28
Alignment explanation
Indices: 32711455--32711524 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
32711445 AAACTTGTAC
32711455 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
32711483 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
32711510 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
32711525 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:32711535 original size:27 final size:27
Alignment explanation
Indices: 32711455--32711536 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
32711445 AAACTTGTAC
* *
32711455 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
32711483 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
32711510 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
32711537 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:32718207 original size:46 final size:46
Alignment explanation
Indices: 32718041--32718214 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
32718031 TGTAACCCGC
* * *
32718041 CCATAAGCGAACTC-GACTCAACTCAAC-AGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
32718085 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
32718135 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
32718178 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
32718215 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 15 0.14
45 15 0.14
46 35 0.32
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32718213 original size:93 final size:91
Alignment explanation
Indices: 32718048--32718217 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 91
32718038 CGCCCATAAG
* *
32718048 CGAACTCGACTCAACTCAACAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 CGAACTCGACTCAACTCAACAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
32718113 GAGTTCGGATGCCTAGTTACATCTCA
66 GAGTTCGGATGCCTAGTTACATCTCA
*
32718139 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTC-GACTCAACTCAAC-AGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32718204 ACGAGTTCGGATGC
64 ACGAGTTCGGATGC
32718218 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 7 0.09
92 13 0.18
93 54 0.73
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (91 bp):
CGAACTCGACTCAACTCAACAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCA
Found at i:32718233 original size:46 final size:44
Alignment explanation
Indices: 32718090--32718233 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
32718080 CGCATCCATA
32718090 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
32718137 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
32718183 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
32718229 AGTGA
1 AGTGA
32718234 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:32718671 original size:30 final size:30
Alignment explanation
Indices: 32718636--32718692 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
32718626 TTAACTCAAA
32718636 TTTTGCAAAATTACAATTTTACCCCTAAAC
1 TTTTGCAAAATTACAATTTTACCCCTAAAC
* * * *
32718666 TTTTGCATATTTACATTTTTGCCCCTA
1 TTTTGCAAAATTACAATTTTACCCCTA
32718693 GGCTCGGGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTACCCCTAAAC
Found at i:32724021 original size:72 final size:72
Alignment explanation
Indices: 32723933--32724095 Score: 213
Period size: 72 Copynumber: 2.3 Consensus size: 72
32723923 TGTGGGCCCT
*** *
32723933 GGTACTGACTTTGTGTATAAACCCGTGAGCAACTTGTTGAGC-GAGCA-TACCATGCTAATGCTT
1 GGTACTGACTTTGTGTATAAACCCGTGAGCAACTCAATGAGCAGA-CATTA-CATGATAATGCTT
32723996 TGGGGTCCG
64 TGGGGTCCG
* * *
32724005 GGTACTGACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCAGACATTACTTGATAATGCTTTG
1 GGTACTGACTTTGTGTATAAACCCGTGAGCAACTCAATGAGCAGACATTACATGATAATGCTTTG
*
32724070 GGGTCTG
66 GGGTCCG
*
32724077 GGTGCTGACTTTGTGTATA
1 GGTACTGACTTTGTGTATA
32724096 GACTGGTGAG
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
72 76 0.95
73 4 0.05
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.32
Consensus pattern (72 bp):
GGTACTGACTTTGTGTATAAACCCGTGAGCAACTCAATGAGCAGACATTACATGATAATGCTTTG
GGGTCCG
Found at i:32727172 original size:19 final size:19
Alignment explanation
Indices: 32727148--32727240 Score: 86
Period size: 19 Copynumber: 5.1 Consensus size: 19
32727138 AATAAATTAC
*
32727148 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTTAGT
32727167 TCATCTTAGTTAATTTAGT
1 TCATCTTAGTTAATTTAGT
* * * *
32727186 T--GC-TGGAATAAATTA-T
1 TCATCTTAG-TTAATTTAGT
* *
32727202 TCATATTAGTTAATTAAGT
1 TCATCTTAGTTAATTTAGT
32727221 TCATCTTAGTTAATTTAGT
1 TCATCTTAGTTAATTTAGT
32727240 T
1 T
32727241 GCTAGAATAA
Statistics
Matches: 56, Mismatches: 13, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
16 4 0.07
17 7 0.12
18 5 0.09
19 40 0.71
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.48
Consensus pattern (19 bp):
TCATCTTAGTTAATTTAGT
Found at i:32727199 original size:54 final size:54
Alignment explanation
Indices: 32727122--32727250 Score: 213
Period size: 54 Copynumber: 2.4 Consensus size: 54
32727112 CTTAGTTTAA
* * *
32727122 TTAATTAAGTTGCTGGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAG
1 TTAATTTAGTTGCTGGAATAAATTACTCATATTAGTTAATTAAGTTCATCTTAG
*
32727176 TTAATTTAGTTGCTGGAATAAATTATTCATATTAGTTAATTAAGTTCATCTTAG
1 TTAATTTAGTTGCTGGAATAAATTACTCATATTAGTTAATTAAGTTCATCTTAG
*
32727230 TTAATTTAGTTGCTAGAATAA
1 TTAATTTAGTTGCTGGAATAA
32727251 TTTAATGATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (54 bp):
TTAATTTAGTTGCTGGAATAAATTACTCATATTAGTTAATTAAGTTCATCTTAG
Found at i:32727330 original size:10 final size:9
Alignment explanation
Indices: 32727297--32727337 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
32727287 TTTATTTAAG
32727297 TTAA-GTGT
1 TTAATGTGT
32727305 TTAATGTGT
1 TTAATGTGT
*
32727314 TTTATGTGT
1 TTAATGTGT
32727323 TTAAATGTGT
1 TT-AATGTGT
32727333 TTAAT
1 TTAAT
32727338 TTCAGGTGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 4 0.14
9 17 0.59
10 8 0.28
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (9 bp):
TTAATGTGT
Found at i:32734468 original size:58 final size:59
Alignment explanation
Indices: 32734408--32734534 Score: 156
Period size: 58 Copynumber: 2.2 Consensus size: 59
32734398 AGAAATGGTG
**
32734408 AAATGGAGAAATA-GGAAACATTTAGGAAATGATTATGGTTTTCTCCAAAAT-GAAAGTGA
1 AAATGGAGAAATATGG-AACATTTAGGAAATGAAGATGGTTTTCT-CAAAATGGAAAGTGA
* * *
32734467 AAATGGAGAAA-ATGGAATATTTTGGAAATGAAGGTGGTTTTCTCAAAATGGAAA-TGA
1 AAATGGAGAAATATGGAACATTTAGGAAATGAAGATGGTTTTCTCAAAATGGAAAGTGA
32734524 AAAT-GAGAAAT
1 AAATGGAGAAAT
32734535 GAATTCATTT
Statistics
Matches: 60, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
56 6 0.10
57 13 0.22
58 28 0.47
59 13 0.22
ACGTcount: A:0.45, C:0.05, G:0.24, T:0.27
Consensus pattern (59 bp):
AAATGGAGAAATATGGAACATTTAGGAAATGAAGATGGTTTTCTCAAAATGGAAAGTGA
Found at i:32736774 original size:49 final size:49
Alignment explanation
Indices: 32736617--32736981 Score: 154
Period size: 49 Copynumber: 7.7 Consensus size: 49
32736607 AGGGTATGAT
* ** * *
32736617 GCCGATGCCATGTTCCAA-ACATGGTCTTACACT-A-GCTCACGTATCTAA
1 GCCGATGCCATG-TCCAAGACA-GGTCTTACACTAACTCTCATATATCGAG
* * * *
32736665 GTCGATGCCATCTCCAAGACAGGTCTTACACTGACTTTCATATATCGAG
1 GCCGATGCCATGTCCAAGACAGGTCTTACACTAACTCTCATATATCGAG
** * * *
32736714 GCCGACACCATGTCCTAGACAGGTCTTACACTAACTCTCATCTATTG-G
1 GCCGATGCCATGTCCAAGACAGGTCTTACACTAACTCTCATATATCGAG
** * ** * * *
32736762 TGTTGATGCCATGTCCCAGACAGGTCTTACA-T---TGACACATGTC-AA
1 -GCCGATGCCATGTCCAAGACAGGTCTTACACTAACTCTCATATATCGAG
* * * * *
32736807 GCTGATGCCATGTCCTAGATAGGTCTTACACTAGCT-TGCATATCTCGAG
1 GCCGATGCCATGTCCAAGACAGGTCTTACACTAACTCT-CATATATCGAG
* * * ** * * * *
32736856 ACCGATG-CATATCCCAGACATTTCTTACACTAGCTCTCATCT-T-AAT
1 GCCGATGCCATGTCCAAGACAGGTCTTACACTAACTCTCATATATCGAG
* * * *
32736902 GCCAATGCCATATCCCAA-ACATGGTCTTACACTAGCTCTCATA-AT-GTG
1 GCCGATGCCATGT-CCAAGACA-GGTCTTACACTAACTCTCATATATCGAG
* * *
32736950 GTCGATG-CAGGTCCCAA-ACATGTCTTACACTA
1 GCCGATGCCATGT-CCAAGACAGGTCTTACACTA
32736982 GAACACATCC
Statistics
Matches: 241, Mismatches: 60, Indels: 34
0.72 0.18 0.10
Matches are distributed among these distances:
44 27 0.11
45 6 0.02
46 17 0.07
47 36 0.15
48 77 0.32
49 78 0.32
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCAAGACAGGTCTTACACTAACTCTCATATATCGAG
Found at i:32743317 original size:49 final size:49
Alignment explanation
Indices: 32743258--32743571 Score: 165
Period size: 49 Copynumber: 6.6 Consensus size: 49
32743248 ATATCTAAGT
* * *
32743258 CGATGCCATGTCCAAGACAGGTCTTACATTGACTTTCATATATCGAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGC
* * * * *
32743307 CGATGGCATGTCCCAGACAAGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
* * * * **
32743356 CGATGCCATGCCCCAGACAGGTCTTATACTGA----CACATGTC-AAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
* * * *
32743400 CGATGCCATGTCCCAGATAGGTCTTACACT-AGCTTTTATATCTCGAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCG-GTGC
* * * * * * **
32743449 CAATG-TATGTCCCAGACATGTCTTACGCT-AGCTCTCGTCT-T-AATGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCGGTGC
** * * *
32743495 TAATGCCATGTCACAGATATGGTCTTACACTGGCTCTCATA-AT--GTGGC
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGACTCTCATATATCGGT-GC
* *
32743543 CGATG-CATGTCCCGGACATGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
32743572 AGCACAAATC
Statistics
Matches: 198, Mismatches: 53, Indels: 31
0.70 0.19 0.11
Matches are distributed among these distances:
43 1 0.01
44 28 0.14
45 5 0.03
46 16 0.08
47 22 0.11
48 54 0.27
49 72 0.36
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
Found at i:32743565 original size:94 final size:95
Alignment explanation
Indices: 32743402--32743574 Score: 233
Period size: 94 Copynumber: 1.8 Consensus size: 95
32743392 TGTCAAGCCG
* * * * *
32743402 ATGCCATGTCCCAGATAGGTCTTACACTAGCTTTTATATCTCGAGGCCAATGTATGTCCCAGACA
1 ATGCCATGTCACAGATAGGTCTTACACTAGCTCTCATATATCGAGGCCAATGCATGTCCCAGACA
*
32743467 TGTCTTACGCTAGCTCTCGTCTTAATGCTA
66 TGTCTTACACTAGCTCTCGTCTTAATGCTA
* * * *
32743497 ATGCCATGTCACAGATATGGTCTTACACTGGCTCTCATA-AT-GTGGCCGATGCATGTCCCGGAC
1 ATGCCATGTCACAGATA-GGTCTTACACTAGCTCTCATATATCGAGGCCAATGCATGTCCCAGAC
32743560 ATGTCTTACACTAGC
65 ATGTCTTACACTAGC
32743575 ACAAATCCAT
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
94 32 0.48
95 17 0.25
96 18 0.27
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.31
Consensus pattern (95 bp):
ATGCCATGTCACAGATAGGTCTTACACTAGCTCTCATATATCGAGGCCAATGCATGTCCCAGACA
TGTCTTACACTAGCTCTCGTCTTAATGCTA
Found at i:32744266 original size:20 final size:18
Alignment explanation
Indices: 32744229--32744271 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
32744219 CTATAGCAAC
32744229 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
32744246 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
32744266 TTACAA
1 TCACAA
32744272 ACTTTACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:32745879 original size:8 final size:8
Alignment explanation
Indices: 32745864--32745902 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
32745854 GTATGTATGA
32745864 TATTATTT
1 TATTATTT
*
32745872 TGTTATTT
1 TATTATTT
*
32745880 TGTTATTT
1 TATTATTT
*
32745888 TATCATTT
1 TATTATTT
32745896 TATTATT
1 TATTATT
32745903 ATGGATAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.72
Consensus pattern (8 bp):
TATTATTT
Found at i:32746329 original size:16 final size:17
Alignment explanation
Indices: 32746308--32746346 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
32746298 CTTTGGGGTA
32746308 AATTTTGT-AATTTTGT
1 AATTTTGTAAATTTTGT
*
32746324 AATTTTGTAAATTTTTT
1 AATTTTGTAAATTTTGT
32746341 AATTTT
1 AATTTT
32746347 TTATCATGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (17 bp):
AATTTTGTAAATTTTGT
Found at i:32746336 original size:9 final size:8
Alignment explanation
Indices: 32746308--32746346 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
32746298 CTTTGGGGTA
32746308 AATTTTGT
1 AATTTTGT
32746316 AATTTTGT
1 AATTTTGT
32746324 AATTTTGT
1 AATTTTGT
*
32746332 AAATTTTTT
1 -AATTTTGT
32746341 AATTTT
1 AATTTT
32746347 TTATCATGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 22 0.76
9 7 0.24
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (8 bp):
AATTTTGT
Found at i:32750164 original size:39 final size:39
Alignment explanation
Indices: 32750077--32750332 Score: 363
Period size: 39 Copynumber: 6.6 Consensus size: 39
32750067 AGGATTTTAA
* * * *
32750077 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGATTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATAT
*
32750115 CTGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
32750154 CCGGGTTAAGTCCCGAAGGCATTTGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
32750193 CCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* * *
32750232 TCGAGCTAAGTCCCGAAGGCATTCGTACTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
32750271 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
32750310 CCGGGCTAAGTTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
32750333 TGGGTTGGAA
Statistics
Matches: 196, Mismatches: 20, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
38 19 0.10
39 173 0.88
40 4 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
Found at i:32753077 original size:17 final size:17
Alignment explanation
Indices: 32753057--32753090 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
32753047 TGAACAATGT
*
32753057 AAAAAT-ATGAAATTGA
1 AAAAATGATCAAATTGA
32753073 AAAAATGATCAAATTGA
1 AAAAATGATCAAATTGA
32753090 A
1 A
32753091 TGAAACATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.24
Consensus pattern (17 bp):
AAAAATGATCAAATTGA
Found at i:32753231 original size:54 final size:52
Alignment explanation
Indices: 32753170--32753375 Score: 225
Period size: 53 Copynumber: 3.9 Consensus size: 52
32753160 CCATGGCAAC
*
32753170 AAGTGATAAGTGATATCCATATAAGACCATAGCTGGGCTATGGCATCGGAAAA
1 AAGTGATAAGTG-TATCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAAA
* * * * * **
32753223 CAAGTGATAAGTGATTTTCGTATAAGACTATAGCCGGGCTATGGCTTCGGATTA
1 -AAGTGATAAGTG-TATCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAAA
*
32753277 AAGTGATACAAGTG-ATCCGTATAAGACCATAGCTGGGCTATGGCATCGGAGAA
1 AAGTGAT--AAGTGTATCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAAA
* * * * * *
32753330 ATGTGATAAGTGTTTCCGTGTAAGACCATATCTGAGATATGGCATC
1 AAGTGATAAGTGTATCCGTATAAGACCATAGCTGGGCTATGGCATC
32753376 AGTATGATAT
Statistics
Matches: 128, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
51 5 0.04
52 28 0.22
53 45 0.35
54 45 0.35
55 5 0.04
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.27
Consensus pattern (52 bp):
AAGTGATAAGTGTATCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAAA
Found at i:32754362 original size:13 final size:13
Alignment explanation
Indices: 32754344--32754378 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
32754334 GTCAGATCTA
32754344 CCCACGGCCTGGC
1 CCCACGGCCTGGC
*
32754357 CCCACGGCTTGGC
1 CCCACGGCCTGGC
32754370 CCCACGGCC
1 CCCACGGCC
32754379 ATGGGAACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.09, C:0.54, G:0.29, T:0.09
Consensus pattern (13 bp):
CCCACGGCCTGGC
Found at i:32754447 original size:20 final size:20
Alignment explanation
Indices: 32754398--32754448 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
32754388 CCACGGGCTA
*
32754398 GCCACATGGCCATGTCCCAG
1 GCCACATGGGCATGTCCCAG
32754418 GCCACATGGGCATGTCCCAG
1 GCCACATGGGCATGTCCCAG
32754438 GCCACATGGGC
1 GCCACATGGGC
32754449 GTGTGCCCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.20, C:0.37, G:0.29, T:0.14
Consensus pattern (20 bp):
GCCACATGGGCATGTCCCAG
Found at i:32756574 original size:29 final size:28
Alignment explanation
Indices: 32756532--32756592 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
32756522 GTGAGCATGA
*
32756532 ATATAAGGTGATTTGGGCCTAACGGGCC
1 ATATAAGGTGATTTGGGCCTAACAGGCC
*
32756560 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATAT-AAGGTGATTTGGGCCTAACAGGCC
32756589 ATAT
1 ATAT
32756593 GAATATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAGGTGATTTGGGCCTAACAGGCC
Found at i:32756605 original size:29 final size:29
Alignment explanation
Indices: 32756539--32756655 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
32756529 TGAATATAAG
* * * *
32756539 GTGATTTGGGCCTAACGGGCCATATAAAG
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* *
32756568 GTGATTTGGGCCTAATAGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* * *
32756597 ATGAATTGGGCTTGATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* *
32756626 GTGAATTGAGCCTAATGGGCAATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
32756655 G
1 G
32756656 AGATGGGCAA
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 74 1.00
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.28
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATGAAT
Found at i:32763734 original size:53 final size:52
Alignment explanation
Indices: 32763597--32763804 Score: 188
Period size: 53 Copynumber: 3.9 Consensus size: 52
32763587 TGACCATGGC
* *
32763597 AACAAGTGATGAGTGATACCCGTATAAGACCATAGCTGGGCTATGGCATCAGAA
1 AACAAGTGATAAGTGAT-TCCGTATAAGACCATAGCTGGGCTATGGCATC-GAA
* * * *
32763651 AACAAGTGATAATTGATTTCTGTATAAGACCATAGCCGGGCTATGGCTTCGAA
1 AACAAGTGATAAGTGA-TTCCGTATAAGACCATAGCTGGGCTATGGCATCGAA
* *
32763704 TTA-AAGTGATACAAGTGA-TCCGTATAAGACCATAGCTAGGCTATGGCATCGAA
1 -AACAAGTGAT--AAGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGAA
* * * * * * * *
32763757 GAA-ATGTGATAAGTGTTTTCATGTAAGACCATATCCGGGATATGGCAT
1 -AACAAGTGATAAGTGATTCCGTATAAGACCATAGCTGGGCTATGGCAT
32763805 TGGTATGATA
Statistics
Matches: 126, Mismatches: 23, Indels: 12
0.78 0.14 0.07
Matches are distributed among these distances:
51 5 0.04
52 24 0.19
53 48 0.38
54 43 0.34
55 6 0.05
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (52 bp):
AACAAGTGATAAGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGAA
Done.