Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 107 of 292
Found at i:32773651 original size:50 final size:50
Alignment explanation
Indices: 32773476--32773705 Score: 234
Period size: 50 Copynumber: 4.6 Consensus size: 50
32773466 ATTGTGAATA
* * * *
32773476 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTG-TTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-AATGATGAGGT
* * * * * ** *
32773526 CGCATGTGTAGTACTAAGTGCAGGCAACTATGCGTACTC-AATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAAATGA-TGAGGT
*
32773577 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAAATGATGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGATGAGGT
* *
32773627 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGAATTGTTGA--T
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AAATGATGAGGT
* * *
32773676 CGCATGTGTAGTACTAAGTGCATGCTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA
32773706 TGCATATCAG
Statistics
Matches: 150, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
49 31 0.21
50 72 0.48
51 47 0.31
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGATGAGGT
Found at i:32773651 original size:101 final size:99
Alignment explanation
Indices: 32773476--32773705 Score: 277
Period size: 101 Copynumber: 2.3 Consensus size: 99
32773466 ATTGTGAATA
* * * * *
32773476 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCATAATGTGAAGTCACATGTGTAGTACT
*
32773541 AAGTGCAGGCAACTATGCGTACTC-AA-TGACTTCGAT
66 AAGTGCAGGCAACTACGCGTA-TCGAATTG--TT-GAT
* *
32773577 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCA-AATGATGAGGTCACGTGTGTAGTAC
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCATAATG-TGAAGTCACATGTGTAGTAC
* *
32773641 TAAGTGCAGGCTACTACGTGTATCGAATTGTTGAT
65 TAAGTGCAGGCAACTACGCGTATCGAATTGTTGAT
* * *
32773676 CGCATGTGTAGTACTAAGTGCATGCTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA
32773706 TGCATATCAG
Statistics
Matches: 113, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
99 30 0.27
100 7 0.06
101 74 0.65
102 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (99 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCATAATGTGAAGTCACATGTGTAGTACT
AAGTGCAGGCAACTACGCGTATCGAATTGTTGAT
Found at i:32775646 original size:40 final size:40
Alignment explanation
Indices: 32775602--32775781 Score: 206
Period size: 40 Copynumber: 4.5 Consensus size: 40
32775592 GCTCGATTGT
* * * *
32775602 CTTCGGGACATAGCCCGG-TTATAGTAATTTGCGCAAATGC
1 CTTCGGGACATAACCCGGATT-TAGTAACTCGCACAAATGC
* * *
32775642 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAATTGC
1 CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
32775682 CTTCGGGA-ATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAACCCGGATTTAGTAACTCGCACAAATGC
* * *
32775722 CTTCGGGA-ATTAACCCAGATTTAGCAACTCGCACAAATAC
1 CTTCGGGACA-TAACCCGGATTTAGTAACTCGCACAAATGC
32775762 CTTCGGGA-ATTAACCCGGAT
1 CTTCGGGACA-TAACCCGGAT
32775782 ATCATTCGAA
Statistics
Matches: 124, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
40 122 0.98
41 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:32775672 original size:80 final size:80
Alignment explanation
Indices: 32775562--32775781 Score: 241
Period size: 80 Copynumber: 2.8 Consensus size: 80
32775552 GAATCACGTA
* * * * * * *
32775562 CCTTC-GGAATTTAA-CCGGATATAGCTACTCGCTCGATTGTCTTCGGGACA-TAGCCCGG-TTA
1 CCTTCGGGAA-TTAACCCAGATTTAGCAACTCGCACAATTGCCTTCGGGA-ATTAACCCGGATT-
* * *
32775623 TAGTAATTTGCGCAAATG
63 TAGTAACTCGCACAAATG
* * * *
32775641 CCTTCGGGACTTAACCCGGATTTGGTAACTCGCACAATTGCCTTCGGGAATTAACCCGGATTTAG
1 CCTTCGGGAATTAACCCAGATTTAGCAACTCGCACAATTGCCTTCGGGAATTAACCCGGATTTAG
32775706 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* *
32775721 CCTTCGGGAATTAACCCAGATTTAGCAACTCGCACAAATACCTTCGGGAATTAACCCGGAT
1 CCTTCGGGAATTAACCCAGATTTAGCAACTCGCACAATTGCCTTCGGGAATTAACCCGGAT
32775782 ATCATTCGAA
Statistics
Matches: 119, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
79 10 0.08
80 107 0.90
81 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (80 bp):
CCTTCGGGAATTAACCCAGATTTAGCAACTCGCACAATTGCCTTCGGGAATTAACCCGGATTTAG
TAACTCGCACAAATG
Found at i:32778293 original size:8 final size:8
Alignment explanation
Indices: 32778280--32778327 Score: 60
Period size: 8 Copynumber: 5.8 Consensus size: 8
32778270 TCTTATATTT
32778280 TTTTTTAC
1 TTTTTTAC
32778288 TTTTTTTAC
1 -TTTTTTAC
32778297 TTTTTTTAC
1 -TTTTTTAC
*
32778306 TTTTTAAC
1 TTTTTTAC
*
32778314 TTTTTAAC
1 TTTTTTAC
32778322 TTTTTT
1 TTTTTT
32778328 TTCTTATATT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
8 20 0.54
9 17 0.46
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTTTAC
Found at i:32778293 original size:9 final size:9
Alignment explanation
Indices: 32778279--32778328 Score: 68
Period size: 9 Copynumber: 5.8 Consensus size: 9
32778269 TTCTTATATT
32778279 TTTTTTTAC
1 TTTTTTTAC
32778288 TTTTTTTAC
1 TTTTTTTAC
32778297 TTTTTTTAC
1 TTTTTTTAC
*
32778306 -TTTTTAAC
1 TTTTTTTAC
*
32778314 -TTTTTAAC
1 TTTTTTTAC
32778322 TTTTTTT
1 TTTTTTT
32778329 TCTTATATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
8 15 0.39
9 23 0.61
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:32778302 original size:18 final size:18
Alignment explanation
Indices: 32778279--32778328 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 18
32778269 TTCTTATATT
32778279 TTTTTTTACTTTTTTTAC
1 TTTTTTTACTTTTTTTAC
*
32778297 TTTTTTTAC-TTTTTAAC
1 TTTTTTTACTTTTTTTAC
*
32778314 -TTTTTAACTTTTTTT
1 TTTTTTTACTTTTTTT
32778329 TCTTATATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 7 0.25
17 12 0.43
18 9 0.32
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTTTACTTTTTTTAC
Found at i:32778327 original size:25 final size:26
Alignment explanation
Indices: 32778280--32778328 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
32778270 TCTTATATTT
* *
32778280 TTTTTTACTTTTTTTACTTTTTTTAC
1 TTTTTAACTTTTTTAACTTTTTTTAC
32778306 TTTTTAAC-TTTTTAACTTTTTTT
1 TTTTTAACTTTTTTAACTTTTTTT
32778329 TCTTATATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (26 bp):
TTTTTAACTTTTTTAACTTTTTTTAC
Found at i:32778417 original size:36 final size:37
Alignment explanation
Indices: 32778345--32778418 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 37
32778335 ATTTTGTCTC
*
32778345 TTTCTTAGATTTTTTTCTTTTTTAAGTTTCATATTAT
1 TTTCTTAGATTTTTTTCTTATTTAAGTTTCATATTAT
32778382 TTTCTTA-ATTTATTTTGCTTATTTAA-TTT-ATATTAT
1 TTTCTTAGATTT-TTTT-CTTATTTAAGTTTCATATTAT
32778418 T
1 T
32778419 AATTTTAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
36 12 0.35
37 14 0.41
38 8 0.24
ACGTcount: A:0.22, C:0.07, G:0.04, T:0.68
Consensus pattern (37 bp):
TTTCTTAGATTTTTTTCTTATTTAAGTTTCATATTAT
Found at i:32778477 original size:21 final size:21
Alignment explanation
Indices: 32778421--32778494 Score: 60
Period size: 21 Copynumber: 3.4 Consensus size: 21
32778411 ATATTATTAA
* * * *
32778421 TTTTAAAAAATTTGTAATATA
1 TTTTTAAAATTTTATAATATT
*
32778442 TATTTAAAATGTTTTATAATATT
1 TTTTTAAAA--TTTTATAATATT
*
32778465 TTTTTAAAATTTTA-ATTATT
1 TTTTTAAAATTTTATAATATT
32778485 ATTTTTAAAA
1 -TTTTTAAAA
32778495 ATATTTTTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
20 5 0.12
21 21 0.49
23 17 0.40
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
TTTTTAAAATTTTATAATATT
Found at i:32778495 original size:22 final size:23
Alignment explanation
Indices: 32778408--32778496 Score: 78
Period size: 23 Copynumber: 4.0 Consensus size: 23
32778398 GCTTATTTAA
* *
32778408 TTTATATTATTAATTTTAAAAAA
1 TTTATATTATTATTTTTAAAAAT
* * * *
32778431 TTTGTAATA-TATATTTAAAATGT
1 TTTATATTATTATTTTTAAAA-AT
*
32778454 TTTATAATATT-TTTTT-AAAAT
1 TTTATATTATTATTTTTAAAAAT
32778475 TTTA-ATTATTATTTTTAAAAAT
1 TTTATATTATTATTTTTAAAAAT
32778497 ATTTTTAACT
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
20 5 0.10
21 10 0.19
22 17 0.33
23 19 0.37
24 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
TTTATATTATTATTTTTAAAAAT
Found at i:32778780 original size:18 final size:17
Alignment explanation
Indices: 32778757--32778794 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
32778747 GTGACTATTA
32778757 ATAAA-TTTAAATATAAAT
1 ATAAATTTTAAA-A-AAAT
32778775 ATAAATTTTAAAAAAAT
1 ATAAATTTTAAAAAAAT
32778792 ATA
1 ATA
32778795 TTAAATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 6 0.32
19 6 0.32
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
ATAAATTTTAAAAAAAT
Found at i:32778985 original size:27 final size:26
Alignment explanation
Indices: 32778955--32779023 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 26
32778945 AAATTTTAAA
*
32778955 TATAATTTTTAAATACATTTAAAAAAT
1 TATAATTTTTAAATA-ATATAAAAAAT
* *
32778982 TATAATTTTTTAATAATATAAGAAAT
1 TATAATTTTTAAATAATATAAAAAAT
*
32779008 CATAATATTTTAAATA
1 TATAAT-TTTTAAATA
32779024 TTTTTTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
26 14 0.39
27 22 0.61
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (26 bp):
TATAATTTTTAAATAATATAAAAAAT
Found at i:32779007 original size:26 final size:27
Alignment explanation
Indices: 32778955--32779020 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 27
32778945 AAATTTTAAA
* *
32778955 TATAATTTTTAAATACATTTAAAAAAT
1 TATAATTTTTTAATACATATAAAAAAT
*
32778982 TATAATTTTTTAATA-ATATAAGAAAT
1 TATAATTTTTTAATACATATAAAAAAT
* *
32779008 CATAATATTTTAA
1 TATAATTTTTTAA
32779021 ATATTTTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 20 0.59
27 14 0.41
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (27 bp):
TATAATTTTTTAATACATATAAAAAAT
Found at i:32779081 original size:35 final size:35
Alignment explanation
Indices: 32779024--32779090 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 35
32779014 ATTTTAAATA
*
32779024 TTTTTTAAAAATTTTGTCTTTTTCCTTTTTTTTAC
1 TTTTTTAAAAATTTTGTCTTTTTCCTTATTTTTAC
* * *
32779059 TTTTTTGAAATTTTATGT-TTTTTTCTTATTTT
1 TTTTTTAAAAATTT-TGTCTTTTTCCTTATTTT
32779091 ATTTTGTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 24 0.89
36 3 0.11
ACGTcount: A:0.16, C:0.07, G:0.04, T:0.72
Consensus pattern (35 bp):
TTTTTTAAAAATTTTGTCTTTTTCCTTATTTTTAC
Found at i:32779188 original size:21 final size:21
Alignment explanation
Indices: 32779149--32779192 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
32779139 ATTTAAAATG
32779149 TTTTATAATATATTTTTTACAA
1 TTTTATAATATATTTTTTA-AA
32779171 TTTTA-AATAT-TATTTTTAAA
1 TTTTATAATATAT-TTTTTAAA
32779191 TT
1 TT
32779193 CTTTTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 5 0.24
21 11 0.52
22 5 0.24
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTATAATATATTTTTTAAA
Found at i:32779324 original size:18 final size:18
Alignment explanation
Indices: 32779297--32779345 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
32779287 GTGACTATTA
*
32779297 ATAAATTTAAATATAAAT
1 ATAAAATTAAATATAAAT
32779315 ATAAAATTAAA-A-AAAT
1 ATAAAATTAAATATAAAT
*
32779331 ATATATATTAAATAT
1 ATA-AAATTAAATAT
32779346 TTTTTTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 7 0.27
17 8 0.31
18 11 0.42
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAAAATTAAATATAAAT
Found at i:32782377 original size:30 final size:30
Alignment explanation
Indices: 32782341--32782463 Score: 174
Period size: 30 Copynumber: 4.1 Consensus size: 30
32782331 GTCCCAGAGT
* *
32782341 AGTTCATATAACCCGGACATAGGTAGTTCG
1 AGTTCATATCACCCGGACATAGGTGGTTCG
* *
32782371 AGTTCATATCACCCGGACATGGGTGGTTCA
1 AGTTCATATCACCCGGACATAGGTGGTTCG
*
32782401 AGTTCATATCACCCGGACATGGGTGGTTCG
1 AGTTCATATCACCCGGACATAGGTGGTTCG
* * *
32782431 AGTTCATATCACCTGGATATAGGCGGTTCG
1 AGTTCATATCACCCGGACATAGGTGGTTCG
32782461 AGT
1 AGT
32782464 CTATTTGACC
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 84 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (30 bp):
AGTTCATATCACCCGGACATAGGTGGTTCG
Found at i:32785938 original size:13 final size:13
Alignment explanation
Indices: 32785894--32785939 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
32785884 CGAAAACTTG
32785894 AAATATATTTTTA-
1 AAATAT-TTTTTAT
*
32785907 AAA-ATGTTTTAT
1 AAATATTTTTTAT
32785919 AATATATTTTTTAT
1 AA-ATATTTTTTAT
32785933 AAATATT
1 AAATATT
32785940 AAAAATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 5 0.18
12 4 0.14
13 9 0.32
14 10 0.36
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (13 bp):
AAATATTTTTTAT
Found at i:32786002 original size:10 final size:10
Alignment explanation
Indices: 32785987--32786019 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
32785977 ATTATAAAAC
32785987 ATTTAAAATG
1 ATTTAAAATG
32785997 ATTTAAAATG
1 ATTTAAAATG
32786007 ATTTAAAAT-
1 ATTTAAAATG
32786016 ATTT
1 ATTT
32786020 TTTAATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.17
10 19 0.83
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (10 bp):
ATTTAAAATG
Found at i:32786042 original size:30 final size:27
Alignment explanation
Indices: 32785997--32786059 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 27
32785987 ATTTAAAATG
*
32785997 ATTTAAAATGATTTAAAATATTTTTTAA
1 ATTTTAAATGATTT-AAATATTTTTTAA
32786025 TATTTTAAATGACTTTAAATATTTTTTAA
1 -ATTTTAAATGA-TTTAAATATTTTTTAA
32786054 ATTTTA
1 ATTTTA
32786060 CATAGAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 6 0.19
29 23 0.72
30 3 0.09
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (27 bp):
ATTTTAAATGATTTAAATATTTTTTAA
Found at i:32786795 original size:37 final size:36
Alignment explanation
Indices: 32786725--32786795 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 36
32786715 AATAATTATT
*
32786725 TTTTTAAAATTTTAAAAAATTAATTTGAAAAATACA
1 TTTTTAAAATTTTAAAAAATTAATTTCAAAAATACA
* *
32786761 TTTTTAAAATTTATAAATAATTAATTTCACAAATA
1 TTTTTAAAATTT-TAAAAAATTAATTTCAAAAATA
32786796 TATATATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
36 12 0.39
37 19 0.61
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (36 bp):
TTTTTAAAATTTTAAAAAATTAATTTCAAAAATACA
Found at i:32786868 original size:22 final size:21
Alignment explanation
Indices: 32786823--32786863 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32786813 AAAAAATATT
32786823 TTTAAAAATAATAATTAAAAA
1 TTTAAAAATAATAATTAAAAA
32786844 TTTAAAAA-AAT-ATTATAAAA
1 TTTAAAAATAATAATTA-AAAA
32786864 CATTTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
21 8 0.42
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
TTTAAAAATAATAATTAAAAA
Found at i:32786870 original size:23 final size:22
Alignment explanation
Indices: 32786822--32786895 Score: 62
Period size: 23 Copynumber: 3.4 Consensus size: 22
32786812 TAAAAAATAT
*
32786822 TTTTAAAAATAATAAT-TAAAAA
1 TTTTAAAAA-AATATTATAAAAA
32786844 -TTTAAAAAAATATTATAAAACA
1 TTTTAAAAAAATATTATAAAA-A
* * * **
32786866 TTTTAAATATATATTACAAATT
1 TTTTAAAAAAATATTATAAAAA
32786888 TTTTAAAA
1 TTTTAAAA
32786896 TTAATAATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
20 5 0.12
21 13 0.31
22 8 0.19
23 16 0.38
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (22 bp):
TTTTAAAAAAATATTATAAAAA
Found at i:32786943 original size:18 final size:18
Alignment explanation
Indices: 32786893--32786944 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
32786883 AAATTTTTTA
*
32786893 AAATTAATAATATAAATT
1 AAATAAATAATATAAATT
* *
32786911 AAATAAGTAAAATAAATT
1 AAATAAATAATATAAATT
32786929 AAGA-AAATAATATAAA
1 AA-ATAAATAATATAAA
32786945 ACTTAAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (18 bp):
AAATAAATAATATAAATT
Found at i:32787000 original size:8 final size:8
Alignment explanation
Indices: 32786987--32787026 Score: 62
Period size: 9 Copynumber: 4.8 Consensus size: 8
32786977 AAATATAAGA
32786987 AAAAAAGT
1 AAAAAAGT
32786995 AAAAAAGTT
1 AAAAAAG-T
32787004 AAAAAAGT
1 AAAAAAGT
32787012 AAAAAAAGT
1 -AAAAAAGT
32787021 AAAAAA
1 AAAAAA
32787027 AAATATAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 14 0.47
9 16 0.53
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (8 bp):
AAAAAAGT
Found at i:32793977 original size:27 final size:28
Alignment explanation
Indices: 32793947--32794016 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
32793937 ATAGTGAGTC
32793947 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
32793974 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
32794002 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32794017 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32796577 original size:28 final size:27
Alignment explanation
Indices: 32796544--32796596 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
32796534 TTAGAATACT
*
32796544 TTAGTTTACTAAAATTACCGAAATACGC
1 TTAGTTT-CTAAAAATACCGAAATACGC
* *
32796572 TTAGTTTGTAAAAATACTGAAATAC
1 TTAGTTTCTAAAAATACCGAAATAC
32796597 CCTCGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACGC
Found at i:32796583 original size:27 final size:27
Alignment explanation
Indices: 32796553--32796651 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
32796543 TTTAGTTTAC
32796553 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTAGATTTG
* * * *
32796580 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * *
32796607 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
32796634 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
32796652 CCCAATTTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.10
27 56 0.90
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:32796699 original size:27 final size:27
Alignment explanation
Indices: 32796656--32796858 Score: 235
Period size: 27 Copynumber: 7.5 Consensus size: 27
32796646 AGTACCCCCA
* *
32796656 ATTTACAAAATTACCATTTTACCCCCA
1 ATTTACAAAATTACCATTTTACCCTCG
* *
32796683 ATTTACATAATTACCATTTTACCCTTG
1 ATTTACAAAATTACCATTTTACCCTCG
* * *
32796710 ATTTACATAATTATCGTTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
* * *
32796737 ACTTACAAAATTACCGTTTTACCCTCA
1 ATTTACAAAATTACCATTTTACCCTCG
* * *
32796764 ATTTACAAAATTATCGTTTTACCGTCG
1 ATTTACAAAATTACCATTTTACCCTCG
* * * *
32796791 ATTTATAGAATTACTATTTTACCCTTG
1 ATTTACAAAATTACCATTTTACCCTCG
* *
32796818 ATTTACAGAATTACTATTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
32796845 ATTTACAAAATTAC
1 ATTTACAAAATTAC
32796859 TAAAATACCC
Statistics
Matches: 151, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 151 1.00
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.40
Consensus pattern (27 bp):
ATTTACAAAATTACCATTTTACCCTCG
Found at i:32796867 original size:27 final size:27
Alignment explanation
Indices: 32796581--32797004 Score: 119
Period size: 27 Copynumber: 15.6 Consensus size: 27
32796571 CTTAGTTTGT
* * **
32796581 AAAAATACTGAAATACCCTCGATTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* * * **
32796608 AAAATTACTGAAATACCTTCGACTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* * * *
32796635 AAAATTACCAAAGTACCCCCAATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* *** * *
32796662 AAAATTACCATTTTACCCCCAATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* * *** *
32796689 ATAATTACCATTTTACCCTTGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* ** *
32796716 ATAATTATCGT--TTTACCCTCGACTTAC
1 AAAATTA-C-TAAAATACCCTCGATTTAC
***** *
32796743 AAAATTACCGTTTTACCCTCAATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
** * *
32796770 AAAATTATCGT--TTTACCGTCGATTTAT
1 AAAATTA-C-TAAAATACCCTCGATTTAC
* *** *
32796797 AGAATTACTATTTTACCCTTGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* ***
32796824 AGAATTACTATTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* * **
32796851 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* * **
32796878 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACTAAAATACCCTCGA-TTTAC
*
32796905 AAAATTACCAAAATACCC-CTGATTTAC
1 AAAATTACTAAAATACCCTC-GATTTAC
* *
32796932 AAAGTTAC-AGAAATACCCTTGACTTT-C
1 AAAATTACTA-AAATACCCTCGA-TTTAC
* * *
32796959 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACTA-AAATACCCTCGATTTAC
*
32796988 AAAATTACTGAAATACC
1 AAAATTACTAAAATACC
32797005 TTTGGTTTGT
Statistics
Matches: 323, Mismatches: 56, Indels: 36
0.78 0.13 0.09
Matches are distributed among these distances:
25 1 0.00
26 3 0.01
27 290 0.90
28 10 0.03
29 19 0.06
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCGATTTAC
Found at i:32796884 original size:54 final size:54
Alignment explanation
Indices: 32796656--32796939 Score: 169
Period size: 54 Copynumber: 5.3 Consensus size: 54
32796646 AGTACCCCCA
* * * * * ***
32796656 ATTTACAAAATTACCATTTTACCCCCAATTTACATAATTACCATTTTACCCTTG
1 ATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTG
* * * ***** **
32796710 ATTTACATAATTA-TCGTTTTACCCTCGACTTACAAAATTACCGTTTTACCCTCA
1 ATTTACAAAATTACT-ATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTG
* * * * ***
32796764 ATTTACAAAATTA-TCGTTTTACCGTCGATTTATAGAATTACTATTTTACCCTTG
1 ATTTACAAAATTACT-ATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTG
*
32796818 ATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTG
1 ATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTG
* ** * *** * ** * *
32796872 GTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTG
1 ATTTACAAAATTACTATTTTACCCTCGA-TTTACAAAATTACTAAAATACCCTTG
*
32796926 ATTTACAAAGTTAC
1 ATTTACAAAATTAC
32796940 AGAAATACCC
Statistics
Matches: 183, Mismatches: 44, Indels: 6
0.79 0.19 0.03
Matches are distributed among these distances:
53 2 0.01
54 180 0.98
55 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.06, T:0.38
Consensus pattern (54 bp):
ATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTG
Found at i:32797009 original size:27 final size:27
Alignment explanation
Indices: 32796810--32797012 Score: 142
Period size: 27 Copynumber: 7.4 Consensus size: 27
32796800 ATTACTATTT
* * ***
32796810 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
32796837 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
** *
32796864 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * ** *
32796891 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * *
32796918 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
*
32796945 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAC--AAAATTACTA-AAA
* *
32796974 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*
32797001 TACCTTTGGTTT
1 TACCCTTGGTTT
32797013 GTTGATTTAC
Statistics
Matches: 145, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.01
27 118 0.81
28 7 0.05
29 19 0.13
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:32797113 original size:27 final size:27
Alignment explanation
Indices: 32797029--32797130 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 27
32797019 TTACCAAAAC
* * ***
32797029 ACCCTTGTAGGATGAAATGACTAAAAT
1 ACCCCTGTAGGATAAAATGACCGTAAT
* * *
32797056 ACCCCTATTAGGGTAAAGTGACCGTAA-
1 ACCCCT-GTAGGATAAAATGACCGTAAT
32797083 ACCCCTGTAGGATAAAATGACCGTAAT
1 ACCCCTGTAGGATAAAATGACCGTAAT
32797110 ACCCCTGTATGG-TAAAATGAC
1 ACCCCTGTA-GGATAAAATGAC
32797131 GAATATGCCC
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
26 17 0.28
27 29 0.48
28 15 0.25
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (27 bp):
ACCCCTGTAGGATAAAATGACCGTAAT
Found at i:32798407 original size:9 final size:9
Alignment explanation
Indices: 32798379--32798431 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
32798369 ATAAACATGG
32798379 TATGTATGA
1 TATGTATGA
*
32798388 TATGCACATGA
1 TATG--TATGA
*
32798399 CATGTATGA
1 TATGTATGA
32798408 TATGTACATGA
1 TATGT--ATGA
32798419 TATGTATGA
1 TATGTATGA
32798428 TATG
1 TATG
32798432 CACATGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:32798420 original size:11 final size:11
Alignment explanation
Indices: 32798384--32798439 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
32798374 CATGGTATGT
*
32798384 ATGATATGCAC
1 ATGATATGTAC
*
32798395 ATGACATGT--
1 ATGATATGTAC
32798404 ATGATATGTAC
1 ATGATATGTAC
32798415 ATGATATGT--
1 ATGATATGTAC
*
32798424 ATGATATGCAC
1 ATGATATGTAC
32798435 ATGAT
1 ATGAT
32798440 GTAATCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGTAC
Found at i:32798439 original size:20 final size:20
Alignment explanation
Indices: 32798373--32798439 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
32798363 ATTTTGATAA
*
32798373 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
32798393 ACATGACATGTATGATATGT
1 ACATGATATGTATGATATGC
32798413 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
32798433 ACATGAT
1 ACATGAT
32798440 GTAATCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:32798545 original size:24 final size:23
Alignment explanation
Indices: 32798489--32798635 Score: 222
Period size: 24 Copynumber: 6.2 Consensus size: 23
32798479 GAGGAAGTGA
32798489 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
32798512 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
32798535 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
32798559 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
32798583 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
32798606 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
32798631 AAAAG
1 AAAAG
32798636 AGACTAGGCC
Statistics
Matches: 114, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 43 0.38
24 70 0.61
25 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:32798558 original size:47 final size:47
Alignment explanation
Indices: 32798489--32798635 Score: 224
Period size: 47 Copynumber: 3.1 Consensus size: 47
32798479 GAGGAAGTGA
*
32798489 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
32798535 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
32798583 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
32798631 AAAAG
1 AAAAG
32798636 AGACTAGGCC
Statistics
Matches: 91, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
47 65 0.71
48 26 0.29
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:32798605 original size:71 final size:71
Alignment explanation
Indices: 32798489--32798635 Score: 258
Period size: 71 Copynumber: 2.1 Consensus size: 71
32798479 GAGGAAGTGA
* *
32798489 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
32798554 GTTATC
66 GTTATC
*
32798560 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
32798625 GTTATT
66 GTTATC
32798631 AAAAG
1 AAAAG
32798636 AGACTAGGCC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:32798883 original size:31 final size:31
Alignment explanation
Indices: 32798848--32798911 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
32798838 CGTTTACAGT
*
32798848 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
**
32798879 AAAGGCTTCGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
32798910 AA
1 AA
32798912 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAAAATGA
Found at i:32800968 original size:51 final size:49
Alignment explanation
Indices: 32800849--32801078 Score: 218
Period size: 50 Copynumber: 4.6 Consensus size: 49
32800839 ATTGTGAATA
* *
32800849 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATC-ATACT-ATTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGA-A-TGATTGA-T
* * * *
32800899 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-AATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCGAATGA-TT-GAT
* *
32800950 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAAATGA-TGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGAATGATTGA--T
* * *
32801000 CACGTGTGTAGTACTGAGTGCAGGCTACTACGTGTACCGGATTG-TTGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GAATGATTGAT
* * *
32801049 CGCATGTGTAGTACTAAGTGCATGCTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA
32801079 TGCATATCAG
Statistics
Matches: 151, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
48 2 0.01
49 29 0.19
50 71 0.47
51 48 0.32
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGAATGATTGAT
Found at i:32802530 original size:17 final size:17
Alignment explanation
Indices: 32802508--32802552 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
32802498 AATTTTGGCA
32802508 CTTTACAAATCAATCCT
1 CTTTACAAATCAATCCT
* *
32802525 CTTTACAAATTAGTCCT
1 CTTTACAAATCAATCCT
32802542 CTTTACTAAAT
1 CTTTAC-AAAT
32802553 TGAAGACATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 21 0.84
18 4 0.16
ACGTcount: A:0.33, C:0.24, G:0.02, T:0.40
Consensus pattern (17 bp):
CTTTACAAATCAATCCT
Found at i:32807153 original size:46 final size:47
Alignment explanation
Indices: 32806972--32807154 Score: 155
Period size: 46 Copynumber: 3.9 Consensus size: 47
32806962 TCATTCGTGC
* * *
32806972 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATG-AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGCAGA
* * * * *
32807018 GCCAGTATAAGACCATGTTTGGGACATGGCATCTGC-ATTGAGA--CAAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGATGC-AGA
* * *
32807066 GCTAGTGTAAGTCATGTCAGGGACATGCATCGGCCT-TGAGATGCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGCAGA
*
32807112 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCTACGAGATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATG
32807155 TGTCAGTGTA
Statistics
Matches: 110, Mismatches: 16, Indels: 22
0.74 0.11 0.15
Matches are distributed among these distances:
45 2 0.02
46 58 0.53
47 28 0.25
48 21 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGCAGA
Found at i:32807261 original size:99 final size:96
Alignment explanation
Indices: 32807156--32807334 Score: 236
Period size: 96 Copynumber: 1.8 Consensus size: 96
32807146 TACGAGATGT
* *
32807156 GTCAGTGTAAGACCATGTGTGGAACATGGCATCGGCAC-GGAAATGTGA-GAGCCAATGTAAGAC
1 GTCAGTGTAAGACCATGTCTGGAACATGGCATC-G-ACTGG--ATG-GATAAGCCAATGTAAGAC
32807219 CATGTTTAGGACATGGCATCAGCCTTGATTTCGATA
61 CATGTTTAGGACATGGCATCAGCCTTGATTTCGATA
* * * *
32807255 GTCAGTGTAAGATCATGTCTGGGACATGGCATCGACTTGATGGATAAGCCAGTGTAAGACCATGT
1 GTCAGTGTAAGACCATGTCTGGAACATGGCATCGACTGGATGGATAAGCCAATGTAAGACCATGT
*
32807320 TTGGGACATGGCATC
66 TTAGGACATGGCATC
32807335 GGCATTACAC
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
95 2 0.03
96 35 0.49
97 2 0.03
98 2 0.03
99 30 0.42
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (96 bp):
GTCAGTGTAAGACCATGTCTGGAACATGGCATCGACTGGATGGATAAGCCAATGTAAGACCATGT
TTAGGACATGGCATCAGCCTTGATTTCGATA
Found at i:32807325 original size:47 final size:47
Alignment explanation
Indices: 32807205--32807335 Score: 165
Period size: 47 Copynumber: 2.7 Consensus size: 47
32807195 GAAATGTGAG
* * *
32807205 AGCCAATGTAAGACCATGTTTAGGACATGGCATCAGCCTTGATTTCGAT
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATC-GACTTGA-TTCGAT
* * * *
32807254 AGTCAGTGTAAGATCATGTCTGGGACATGGCATCGACTTGA-TGGAT
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGATTCGAT
32807300 AAGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
1 -AGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
32807336 GCATTACACC
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
46 4 0.06
47 32 0.45
48 6 0.08
49 29 0.41
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGATTCGAT
Found at i:32818044 original size:19 final size:20
Alignment explanation
Indices: 32818017--32818061 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
32818007 AAAACCATAA
32818017 ATTTAATTTTTTTAAAATATT
1 ATTT-ATTTTTTTAAAATATT
*
32818038 -TTTA-TTTTTTGAAATATT
1 ATTTATTTTTTTAAAATATT
32818056 ATTTAT
1 ATTTAT
32818062 CATTTTTAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
18 13 0.62
19 5 0.24
20 3 0.14
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTTATTTTTTTAAAATATT
Found at i:32818045 original size:18 final size:19
Alignment explanation
Indices: 32818024--32818061 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
32818014 TAAATTTAAT
32818024 TTTTTTAAAATATT-TTTA
1 TTTTTTAAAATATTATTTA
*
32818042 TTTTTTGAAATATTATTTA
1 TTTTTTAAAATATTATTTA
32818061 T
1 T
32818062 CATTTTTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (19 bp):
TTTTTTAAAATATTATTTA
Found at i:32822319 original size:24 final size:24
Alignment explanation
Indices: 32822287--32822359 Score: 137
Period size: 24 Copynumber: 3.0 Consensus size: 24
32822277 CTAAGATAAC
*
32822287 TCACAAATGAAATTATGTTCATGA
1 TCACAAATGAAAGTATGTTCATGA
32822311 TCACAAATGAAAGTATGTTCATGA
1 TCACAAATGAAAGTATGTTCATGA
32822335 TCACAAATGAAAGTATGTTCATGA
1 TCACAAATGAAAGTATGTTCATGA
32822359 T
1 T
32822360 GGGTGTTGAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (24 bp):
TCACAAATGAAAGTATGTTCATGA
Found at i:32823351 original size:18 final size:18
Alignment explanation
Indices: 32823328--32823362 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32823318 CCCCTGTCCT
* *
32823328 TTAAGGGGAAGTAGAAAG
1 TTAAGGGAAAGAAGAAAG
32823346 TTAAGGGAAAGAAGAAA
1 TTAAGGGAAAGAAGAAA
32823363 CTGACTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.00, G:0.34, T:0.14
Consensus pattern (18 bp):
TTAAGGGAAAGAAGAAAG
Found at i:32828326 original size:19 final size:19
Alignment explanation
Indices: 32828298--32828342 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
32828288 CAACTTGATC
*
32828298 CAAAAGTTTAGAGAATTTG
1 CAAAATTTTAGAGAATTTG
*
32828317 TAAAATTTTAGAGAATTTG
1 CAAAATTTTAGAGAATTTG
32828336 CAAAATT
1 CAAAATT
32828343 ACCCCACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (19 bp):
CAAAATTTTAGAGAATTTG
Found at i:32830616 original size:7 final size:7
Alignment explanation
Indices: 32830604--32830634 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
32830594 GATTGAGTGA
32830604 TGTGATG
1 TGTGATG
32830611 TGTGATG
1 TGTGATG
32830618 ATGTGATG
1 -TGTGATG
32830626 TGTGATG
1 TGTGATG
32830633 TG
1 TG
32830635 ATATGGGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.16, C:0.00, G:0.42, T:0.42
Consensus pattern (7 bp):
TGTGATG
Found at i:32830617 original size:12 final size:13
Alignment explanation
Indices: 32830585--32830636 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 13
32830575 ATTGTGACTT
32830585 TGTGATGTGGATTG
1 TGTGATGT-GATTG
*
32830599 AGTGATGTGATGTG
1 TGTGATGTGAT-TG
32830613 TGATGATGTGA-TG
1 TG-TGATGTGATTG
32830626 TGTGATGTGAT
1 TGTGATGTGAT
32830637 ATGGGATACA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
12 8 0.24
13 7 0.21
14 10 0.30
15 8 0.24
ACGTcount: A:0.19, C:0.00, G:0.40, T:0.40
Consensus pattern (13 bp):
TGTGATGTGATTG
Found at i:32830621 original size:15 final size:15
Alignment explanation
Indices: 32830601--32830632 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
32830591 GTGGATTGAG
32830601 TGATGTGATGTGTGA
1 TGATGTGATGTGTGA
32830616 TGATGTGATGTGTGA
1 TGATGTGATGTGTGA
32830631 TG
1 TG
32830633 TGATATGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.41
Consensus pattern (15 bp):
TGATGTGATGTGTGA
Found at i:32831972 original size:40 final size:40
Alignment explanation
Indices: 32831877--32832093 Score: 264
Period size: 40 Copynumber: 5.5 Consensus size: 40
32831867 ACAATTTGGT
*
32831877 TACGTATGGCACTTAGTGTGCGATTCGAGATAGCTTTGG-
1 TACGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
32831916 --C-TATGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
1 TACGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
* *
32831953 TACGTATGGCACTTAGTGTGCGATTTGAGATAGCTTTGGC
1 TACGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
* * *
32831993 TATGTATGGCACTTACTGTGCGATTTGAGATAGCTTCGGC
1 TACGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
* * * *
32832033 TATGTATGACACTTAATGTGCGAGATT-GAAATAGCTTCGGC
1 TACGTATGGCACTTAGTGTGC--GATTCGAGATAGCTTCGGC
* *
32832074 TAAGTATTGGCACTCAGTGT
1 TACGTA-TGGCACTTAGTGT
32832094 ACGAGAATTC
Statistics
Matches: 158, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
36 34 0.22
37 1 0.01
39 1 0.01
40 90 0.57
41 18 0.11
42 14 0.09
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (40 bp):
TACGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
Found at i:32837335 original size:29 final size:29
Alignment explanation
Indices: 32837303--32837380 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
32837293 ATACCCTCCG
** *
32837303 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
32837332 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
32837361 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
32837381 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:32844121 original size:29 final size:29
Alignment explanation
Indices: 32844045--32844141 Score: 83
Period size: 28 Copynumber: 3.4 Consensus size: 29
32844035 GCCTACTAGG
* * * * *
32844045 CCAAATCTCTTTCACATGGCCTATTAGGC
1 CCAAATCACATTCATATGGCCCATCAGGC
* * *
32844074 CC-ATTCACATTTATGTGGCCCATCAGGC
1 CCAAATCACATTCATATGGCCCATCAGGC
*
32844102 CCAAATCACATTCATATGG-CCA-CTAGAC
1 CCAAATCACATTCATATGGCCCATC-AGGC
32844130 CCAAATCACATT
1 CCAAATCACATT
32844142 TACAGTCATG
Statistics
Matches: 54, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
27 1 0.02
28 38 0.70
29 15 0.28
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.27
Consensus pattern (29 bp):
CCAAATCACATTCATATGGCCCATCAGGC
Found at i:32851881 original size:28 final size:29
Alignment explanation
Indices: 32851770--32851881 Score: 113
Period size: 28 Copynumber: 4.0 Consensus size: 29
32851760 CTATATATAT
* *
32851770 ATATGGCCTACTAGGCCC-AATCTCTTTC
1 ATATGGCCTACTAGGCCCAAATCACATTC
* * *
32851798 ATATGGCCTATTAGG-CCAATTCACATTT
1 ATATGGCCTACTAGGCCCAAATCACATTC
* * * *
32851826 ATGTGGCCCATTAGGCCCAAGTCACATTC
1 ATATGGCCTACTAGGCCCAAATCACATTC
*
32851855 ATATGGCC-ACTAGACCCAAATCACATT
1 ATATGGCCTACTAGGCCCAAATCACATT
32851882 TACAGTCATG
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
27 2 0.03
28 49 0.71
29 18 0.26
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
ATATGGCCTACTAGGCCCAAATCACATTC
Found at i:32854743 original size:68 final size:67
Alignment explanation
Indices: 32854671--32854820 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
32854661 CATCATGTGT
* * * *
32854671 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
32854733 ATGTAG
62 ATGTAG
** * *
32854739 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
32854804 AG
66 AG
32854806 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
32854821 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:32854776 original size:64 final size:63
Alignment explanation
Indices: 32854695--32854876 Score: 183
Period size: 67 Copynumber: 2.8 Consensus size: 63
32854685 AGACATTATG
* *
32854695 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTG-TACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
32854759 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-G-TACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
32854824 AA
62 AA
* * *
32854826 ACTG--GCTAGGTCACATGGG-GTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGTACTATGTGTACACCATGTAG-ACAAGAGAGC
32854877 CGAACTATAT
Statistics
Matches: 97, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
60 1 0.01
61 19 0.20
62 1 0.01
63 3 0.03
64 21 0.22
65 4 0.04
66 15 0.15
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:32855957 original size:2 final size:2
Alignment explanation
Indices: 32855950--32855980 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
32855940 TCATGACATG
32855950 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32855981 GACTAGTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32859190 original size:68 final size:67
Alignment explanation
Indices: 32859115--32859264 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
32859105 CATCATGTGT
* * * *
32859115 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
32859177 ATGTAG
62 ATGTAG
** * *
32859183 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
32859248 AG
66 AG
32859250 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
32859265 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:32859220 original size:64 final size:64
Alignment explanation
Indices: 32859139--32859322 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
32859129 AGACATTATG
* *
32859139 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
32859203 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
32859268 AA
63 AA
* * * *
32859270 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
32859323 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:32864933 original size:25 final size:25
Alignment explanation
Indices: 32864895--32864942 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
32864885 TTATAATATG
** *
32864895 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
*
32864920 AAAATGACCATTTTACCCTTAGG
1 AAAATGACCATTTTACCCCTAGG
32864943 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:32865101 original size:24 final size:25
Alignment explanation
Indices: 32865074--32865169 Score: 122
Period size: 26 Copynumber: 3.8 Consensus size: 25
32865064 GAGGAAGTGC
*
32865074 AAAAGGGCTATGCCCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
32865098 AAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
32865123 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCCAGTTTACCG
*
32865149 AAAAGGGCTTTTTCCCCAGTT
1 AAAAGGGC-TTTGCCCCAGTT
32865170 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
24 17 0.27
25 13 0.20
26 34 0.53
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:32865182 original size:25 final size:25
Alignment explanation
Indices: 32865073--32865182 Score: 111
Period size: 26 Copynumber: 4.4 Consensus size: 25
32865063 GGAGGAAGTG
* *
32865073 CAAAAGGGC-TATGCCCCAG-TTAC
1 CAAAAGGGCTTTTGCCCCAGTTTAT
32865096 CGAAAAGGGC-TTTGCCCCAGTTTACT
1 C-AAAAGGGCTTTTGCCCCAGTTTA-T
*
32865122 GAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTTGCCCCAGTTTAT
*
32865147 CAAAAAGGGCTTTTTCCCCAG-TTAT
1 C-AAAAGGGCTTTTGCCCCAGTTTAT
*
32865172 TAAAAGAGGCT
1 CAAAAG-GGCT
32865183 AGGCCTCCAG
Statistics
Matches: 75, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
23 1 0.01
24 22 0.29
25 20 0.27
26 32 0.43
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (25 bp):
CAAAAGGGCTTTTGCCCCAGTTTAT
Found at i:32865427 original size:31 final size:31
Alignment explanation
Indices: 32865388--32865463 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
32865378 ATTGTTGCAG
*
32865388 TAAAGGCTTCGGCCCAGTGATATGAATAATGA
1 TAAAGGCTTCGGCCCAGTGATATGAATAA-AA
32865420 -AAAGGCTTCGGCCCAGTGATATGAATAAAA
1 TAAAGGCTTCGGCCCAGTGATATGAATAAAA
32865450 TAAAGGCTTCGGCC
1 TAAAGGCTTCGGCC
32865464 AGGTATATGC
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
30 1 0.02
31 41 0.98
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (31 bp):
TAAAGGCTTCGGCCCAGTGATATGAATAAAA
Found at i:32868637 original size:45 final size:41
Alignment explanation
Indices: 32868547--32868652 Score: 113
Period size: 45 Copynumber: 2.5 Consensus size: 41
32868537 AATGCCACTT
* * *
32868547 TCCCAGACAGGGTCTTACACGAATCAAATACGATGCCAATG
1 TCCCAGACATGGTCTTACACGAACCAAATACGATGCCAACG
*
32868588 TCCCAGACATGGTCTTACACGTAACCACATATATTGATGCCAACG
1 TCCCAGACATGGTCTTACACG-AACCA-A-ATA-CGATGCCAACG
* **
32868633 TCCCACAGGTGGTCTTACAC
1 TCCCAGACATGGTCTTACAC
32868653 AAAATCACAT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 20 0.37
42 4 0.07
43 1 0.02
44 3 0.06
45 26 0.48
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACGAACCAAATACGATGCCAACG
Found at i:32868662 original size:45 final size:45
Alignment explanation
Indices: 32868577--32868672 Score: 111
Period size: 45 Copynumber: 2.1 Consensus size: 45
32868567 GAATCAAATA
* * ** *
32868577 CGATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATAT
1 CGATGCCAACGTCCCACACATGGTCTTACACAAAACCACATACAT
* ** *
32868622 TGATGCCAACGTCCCACAGGTGGTCTTACACAAAATCACATACAT
1 CGATGCCAACGTCCCACACATGGTCTTACACAAAACCACATACAT
32868667 CGATGC
1 CGATGC
32868673 TAACATGTAA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (45 bp):
CGATGCCAACGTCCCACACATGGTCTTACACAAAACCACATACAT
Found at i:32872632 original size:14 final size:15
Alignment explanation
Indices: 32872613--32872641 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32872603 TCACGAAATT
32872613 TTCACACAT-ATAAA
1 TTCACACATAATAAA
32872627 TTCACACATAATAAA
1 TTCACACATAATAAA
32872642 CTCAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:32875715 original size:43 final size:43
Alignment explanation
Indices: 32875559--32875716 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
32875549 TATGTTTTTT
* *
32875559 CGTGTAACACCACGT-TTGGACGTTGGCGTCGA-ATTATAATTTA
1 CGTGTAACACCACGTCTGGGACGTTGGCATCGATATT-TAA-TTA
* * * *
32875602 CGTGTAACACCATGTCTGGGATGTTGGCATC-ATATTTGATTT
1 CGTGTAACACCACGTCTGGGACGTTGGCATCGATATTTAATTA
* * *
32875644 CGTGTAAGACC-CTGCCTAGGACAG-TGGCATCGATATTTAATTA
1 CGTGTAACACCAC-GTCTGGGAC-GTTGGCATCGATATTTAATTA
* *
32875687 CATGTAAAACCACGTCTGGGACGTTGGCAT
1 CGTGTAACACCACGTCTGGGACGTTGGCAT
32875717 TGTATGATAT
Statistics
Matches: 91, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
42 26 0.29
43 49 0.54
44 16 0.18
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (43 bp):
CGTGTAACACCACGTCTGGGACGTTGGCATCGATATTTAATTA
Found at i:32880247 original size:29 final size:29
Alignment explanation
Indices: 32880219--32880321 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
32880209 CCTCCGAGCT
** * * *
32880219 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
32880248 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32880277 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32880306 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32880322 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:32904618 original size:18 final size:19
Alignment explanation
Indices: 32904597--32904632 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
32904587 AATAAAGAAA
*
32904597 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
32904615 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
32904633 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:32905983 original size:30 final size:30
Alignment explanation
Indices: 32905947--32906018 Score: 144
Period size: 30 Copynumber: 2.4 Consensus size: 30
32905937 GACAAGATTG
32905947 GCACTAAGTGTGTGGGTTTAAAATTGTACA
1 GCACTAAGTGTGTGGGTTTAAAATTGTACA
32905977 GCACTAAGTGTGTGGGTTTAAAATTGTACA
1 GCACTAAGTGTGTGGGTTTAAAATTGTACA
32906007 GCACTAAGTGTG
1 GCACTAAGTGTG
32906019 CGAGTTTGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.29, C:0.11, G:0.28, T:0.32
Consensus pattern (30 bp):
GCACTAAGTGTGTGGGTTTAAAATTGTACA
Found at i:32906148 original size:29 final size:29
Alignment explanation
Indices: 32906006--32906136 Score: 203
Period size: 29 Copynumber: 4.5 Consensus size: 29
32905996 AAAATTGTAC
* *
32906006 AGCACTAAGTGTGCGAGTTTG--ATTATAT
1 AGCACTAAGTGTGCGAG-CTGAAAATATAT
32906034 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
*
32906063 AGCACTAATTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
32906093 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
32906122 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
32906137 GATTCACTAT
Statistics
Matches: 96, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
27 2 0.02
28 17 0.18
29 49 0.51
30 28 0.29
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.27
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:32915968 original size:56 final size:52
Alignment explanation
Indices: 32915875--32915985 Score: 134
Period size: 56 Copynumber: 2.1 Consensus size: 52
32915865 TGAAAAAAAA
*
32915875 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAATGTACTAAGG
1 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAA-ATACTAAGG
***
32915928 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATACTAAGG
1 AAAGAAAA-AAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATACTAAGG
32915983 AAA
1 AAA
32915986 AGGGGAGGAT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
53 8 0.16
54 5 0.10
55 13 0.26
56 24 0.48
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (52 bp):
AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATACTAAGG
Found at i:32917297 original size:39 final size:40
Alignment explanation
Indices: 32917174--32917339 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
32917164 AAATTGAATG
* * *
32917174 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
32917213 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
32917253 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
32917292 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
32917332 ATATCCGG
1 ATATCCGG
32917340 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:32917306 original size:79 final size:79
Alignment explanation
Indices: 32917174--32917323 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
32917164 AAATTGAATG
*
32917174 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
32917239 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
32917253 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
32917316 ATTTGTGC
64 AATTGTGC
32917324 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:32919304 original size:46 final size:45
Alignment explanation
Indices: 32919237--32919407 Score: 263
Period size: 46 Copynumber: 3.8 Consensus size: 45
32919227 TGTAACTCGC
* *
32919237 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-AGCGTTCGCAT
* *
32919283 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCAGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCA-GCGTTCGCAT
*
32919329 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAG-CGTTCGCAT
32919375 CCATAAGTGAACT-GGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
32919408 GGATGCCAAA
Statistics
Matches: 115, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
45 21 0.18
46 94 0.82
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGCGTTCGCAT
Found at i:32922188 original size:15 final size:15
Alignment explanation
Indices: 32922140--32922190 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
32922130 TAAAGATAAC
*
32922140 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
32922154 AAGAAATCCA-ACATT
1 AAGAAATCCAGA-ATA
*
32922169 GAGAAATCCAGAATA
1 AAGAAATCCAGAATA
32922184 AAGAAAT
1 AAGAAAT
32922191 TCAAGATACG
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
14 9 0.31
15 19 0.66
16 1 0.03
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:32925231 original size:46 final size:47
Alignment explanation
Indices: 32925173--32925391 Score: 229
Period size: 46 Copynumber: 4.7 Consensus size: 47
32925163 TGTAACCCGC
* * * *
32925173 CCATAAGCGAACTCGGACTCAACTCAAGGAGCTCAGG-G-GTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGAGCATTCACAT
*
32925219 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCACAT
* * * *
32925269 -C-TCA-CGAACTCGGACTGAACTCAACGAGTTCGG-GCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCACAT
* *
32925312 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGA-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCACAT
*
32925358 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
32925392 AGATGCTCAA
Statistics
Matches: 146, Mismatches: 16, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
44 2 0.01
45 5 0.03
46 97 0.66
47 27 0.18
48 2 0.01
49 1 0.01
50 4 0.03
51 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCACAT
Found at i:32929806 original size:6 final size:5
Alignment explanation
Indices: 32929788--32929860 Score: 56
Period size: 6 Copynumber: 12.6 Consensus size: 5
32929778 GAAGTCTAAG
32929788 AAAAT AACAAT AAACAT AAAAAT AGAAAT AAAACT AGAATAT AAAAAT AAAAAT
1 AAAAT AA-AAT AAA-AT -AAAAT A-AAAT AAAA-T A-AA-AT -AAAAT -AAAAT
32929842 AAAAAT AAAAT AAAAT AAA
1 -AAAAT AAAAT AAAAT AAA
32929861 TGGGCTCAAT
Statistics
Matches: 60, Mismatches: 0, Indels: 16
0.79 0.00 0.21
Matches are distributed among these distances:
5 20 0.33
6 30 0.50
7 8 0.13
8 2 0.03
ACGTcount: A:0.75, C:0.04, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:32929814 original size:25 final size:23
Alignment explanation
Indices: 32929786--32929856 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 23
32929776 AAGAAGTCTA
32929786 AGAAAATAACAATAAACATAAAAAT
1 AGAAAATAA-AATAAA-ATAAAAAT
32929811 AG-AAATAAAACTAGAATATAAAAAT
1 AGAAAATAAAA-TA-AA-ATAAAAAT
32929836 A-AAAATAAAAATAAAATAAAA
1 AGAAAAT-AAAATAAAATAAAA
32929857 TAAATGGGCT
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
23 8 0.20
24 10 0.24
25 19 0.46
26 4 0.10
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.17
Consensus pattern (23 bp):
AGAAAATAAAATAAAATAAAAAT
Found at i:32929828 original size:11 final size:12
Alignment explanation
Indices: 32929789--32929856 Score: 77
Period size: 12 Copynumber: 5.7 Consensus size: 12
32929779 AAGTCTAAGA
*
32929789 AAATAACAATA-
1 AAATAAAAATAG
32929800 AACATAAAAATAG
1 AA-ATAAAAATAG
*
32929813 AAATAAAACTAG
1 AAATAAAAATAG
*
32929825 AATATAAAAATAA
1 AA-ATAAAAATAG
32929838 AAATAAAAATA-
1 AAATAAAAATAG
32929849 AAATAAAA
1 AAATAAAA
32929857 TAAATGGGCT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
11 10 0.20
12 28 0.56
13 12 0.24
ACGTcount: A:0.75, C:0.04, G:0.03, T:0.18
Consensus pattern (12 bp):
AAATAAAAATAG
Found at i:32930953 original size:24 final size:23
Alignment explanation
Indices: 32930912--32930967 Score: 76
Period size: 24 Copynumber: 2.4 Consensus size: 23
32930902 TTTTGCTCTA
32930912 ACGAGCTGAAACAATAAGCTCAT
1 ACGAGCTGAAACAATAAGCTCAT
* * *
32930935 ATGAGCTGAGAACAGTAAGCTCTT
1 ACGAGCTGA-AACAATAAGCTCAT
32930959 ACGAGCTGA
1 ACGAGCTGA
32930968 TATATCGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 8 0.29
24 20 0.71
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.20
Consensus pattern (23 bp):
ACGAGCTGAAACAATAAGCTCAT
Found at i:32931810 original size:10 final size:11
Alignment explanation
Indices: 32931795--32931823 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
32931785 ATGGACTAAA
32931795 TTTCATTTG-T
1 TTTCATTTGTT
32931805 TTTCATTTGTT
1 TTTCATTTGTT
32931816 TTTCATTT
1 TTTCATTT
32931824 AATTAACCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.50
11 9 0.50
ACGTcount: A:0.10, C:0.10, G:0.07, T:0.72
Consensus pattern (11 bp):
TTTCATTTGTT
Found at i:32938529 original size:25 final size:24
Alignment explanation
Indices: 32938470--32938593 Score: 78
Period size: 23 Copynumber: 5.2 Consensus size: 24
32938460 ATGATTTTTT
*
32938470 CTCTTTTGAGCTATGAACAGTAAG
1 CTCTATTGAGCTATGAACAGTAAG
** *
32938494 CTCCTCCTGAGCTGATGGACAGTAAG
1 CT-CTATTGAGCT-ATGAACAGTAAG
* *
32938520 CTCTATTGAGCTA-AAATAGTAAG
1 CTCTATTGAGCTATGAACAGTAAG
* *
32938543 CTCTGA-CGAGC--TGAAACAATAAG
1 CTCT-ATTGAGCTATG-AACAGTAAG
* *
32938566 CTCATACT-AGCTAAGAACAGTAAG
1 CTC-TATTGAGCTATGAACAGTAAG
32938590 CTCT
1 CTCT
32938594 TACGAGCTGA
Statistics
Matches: 76, Mismatches: 15, Indels: 19
0.69 0.14 0.17
Matches are distributed among these distances:
23 30 0.39
24 16 0.21
25 17 0.22
26 13 0.17
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (24 bp):
CTCTATTGAGCTATGAACAGTAAG
Found at i:32938616 original size:26 final size:23
Alignment explanation
Indices: 32938485--32938628 Score: 103
Period size: 23 Copynumber: 6.0 Consensus size: 23
32938475 TTGAGCTATG
* *
32938485 AACAGTAAGCTCCTCCTGAGCTGA
1 AACAGTAAGCTCATAC-GAGCTGA
* * *
32938509 TGGACAGTAAGCTC-TATTGAGCTAA
1 --AACAGTAAGCTCATA-CGAGCTGA
*
32938534 AATAGTAAGCTC-TGACGAGCTGA
1 AACAGTAAGCTCAT-ACGAGCTGA
* * *
32938557 AACAATAAGCTCATACTAGCTAA
1 AACAGTAAGCTCATACGAGCTGA
*
32938580 GAACAGTAAGCTCTTACGAGCTGA
1 -AACAGTAAGCTCATACGAGCTGA
32938604 TATATCAGTAAGCTCATACGAGCTG
1 -A-A-CAGTAAGCTCATACGAGCTG
32938629 TGGTGAGTCC
Statistics
Matches: 94, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
23 34 0.36
24 22 0.23
25 8 0.09
26 30 0.32
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (23 bp):
AACAGTAAGCTCATACGAGCTGA
Found at i:32942526 original size:29 final size:29
Alignment explanation
Indices: 32942493--32942566 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
32942483 CCTTCGAGCT
32942493 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
32942522 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32942551 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32942567 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:32942527 original size:58 final size:58
Alignment explanation
Indices: 32942434--32942566 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
32942424 ATACTCGATT
* * * * *
32942434 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
32942492 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
32942550 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
32942567 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:32950379 original size:29 final size:28
Alignment explanation
Indices: 32950309--32950383 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
32950299 ATACTCGATT
* *
32950309 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
32950337 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
32950366 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
32950384 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:32950400 original size:29 final size:29
Alignment explanation
Indices: 32950367--32950440 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
32950357 CCTTCGAGCT
32950367 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
32950396 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32950425 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32950441 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:32954682 original size:47 final size:47
Alignment explanation
Indices: 32954613--32954706 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
32954603 AGAGAATGGT
32954613 TTCGAAGAAATATGACTACTGTATTGATTGGCTTGAAGACATGATGA
1 TTCGAAGAAATATGACTACTGTATTGATTGGCTTGAAGACATGATGA
32954660 TTCGAAGAAATATGACTACTGTATTGATTGGCTTGAAGACATGATGA
1 TTCGAAGAAATATGACTACTGTATTGATTGGCTTGAAGACATGATGA
32954707 GGGTTCTCAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (47 bp):
TTCGAAGAAATATGACTACTGTATTGATTGGCTTGAAGACATGATGA
Found at i:32956073 original size:128 final size:127
Alignment explanation
Indices: 32955736--32956132 Score: 387
Period size: 128 Copynumber: 3.1 Consensus size: 127
32955726 CCCTTGGTCA
* *
32955736 TGCGAGAGCCTCGGGCACCATCAGT-AACCTAGGCCCTTGGTCATGCGAGAGCCTTAGGAACCAT
1 TGCGAGAGCCTC-GG-ACCATCA-TCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTAGGCACCAT
* * * *
32955800 CAGCAACTTAGGCCCTTGGTCGTGCGTGAGCCTC-GGACACCATCGGCACCTTGGTGCCTCAGAT
63 CGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGA-ACCATCGGCACCTTGGTGCCTCGGAT
32955864 G
127 G
* * * * * * ** * **
32955865 TGTGGGAGCCTC-GAGCA-GATCGGTACCTTGGTGCTTGGAT-GTACGAGAGCCTCGGGCACCAT
1 TGCGAGAGCCTCGGACCATCATC--AACCTAGGCCCTTGG-TCGTGCGAGAGCCTTAGGCACCAT
* * * * * * *
32955927 TGACAAACTAGGCCCTTGGTTGTGC-AGGAGCCTCGGGAACCATCGGTAACTTGGTG-CTTGGAT
63 CGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGAACCATCGGCACCTTGGTGCCTCGGAT
32955990 G
127 G
*
32955991 TGCGAGAGCCACGGATACCATCATCAACCTAAGG-CCTTGGTCGTGCGAGAGCCTTAGGCACCAT
1 TGCGAGAGCCTCGG--ACCATCATCAACCT-AGGCCCTTGGTCGTGCGAGAGCCTTAGGCACCAT
* *
32956055 CGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGAATG
63 CGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGAACCATCGGCACCTTGGTGCCTCGGATG
*
32956120 TGCGGGAGCCTCG
1 TGCGAGAGCCTCG
32956133 AGCAGCATCG
Statistics
Matches: 208, Mismatches: 46, Indels: 28
0.74 0.16 0.10
Matches are distributed among these distances:
124 1 0.00
125 1 0.00
126 18 0.09
127 73 0.35
128 79 0.38
129 33 0.16
130 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (127 bp):
TGCGAGAGCCTCGGACCATCATCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTAGGCACCATCGG
CAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGAACCATCGGCACCTTGGTGCCTCGGATG
Found at i:32956099 original size:43 final size:42
Alignment explanation
Indices: 32955681--32956357 Score: 345
Period size: 43 Copynumber: 15.9 Consensus size: 42
32955671 CGGCACCTTG
* * *
32955681 GGCCCTTGGTTGTGTCG-GAGCATCGGGCACCATTGGCAACCAA
1 GGCCCTTGG-TGTG-CGAGAGCCTCGGGCACCATCGGCAACCTA
* * *
32955724 GGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCAGTAACCTA
1 GGCCCTTGGT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* ** * * *
32955767 GGCCCTTGGTCATGCGAGAGCCTTAGGAACCATCAGCAACTTA
1 GGCCCTTGGT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * *
32955810 GGCCCTTGGTCGTGCGTGAGCCTCGGACACCATCGGC-ACCTT
1 GGCCCTTGGT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * * * * * * * *
32955852 GGTGCCTCAGATGTGTGGGAGCCTCGAGCA-GATCGG-TACCTT
1 GG-CCCT-TGGTGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
** * * * *
32955894 GGTGCTTGGATGTACGAGAGCCTCGGGCACCATTGACAAACTA
1 GGCCCTTGG-TGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * *
32955937 GGCCCTTGGTTGTGC-AGGAGCCTCGGGAACCATCGGTAA-CTT
1 GGCCCTTGG-TGTGCGA-GAGCCTCGGGCACCATCGGCAACCTA
** * ** **
32955979 GGTGCTTGGATGTGCGAGAGCCACGGATACCATCATCAACCTAA
1 GGCCCTTGG-TGTGCGAGAGCCTCGGGCACCATCGGCAACCT-A
**
32956023 GG-CCTTGGTCGTGCGAGAGCCTTAGGCACCATCGGCAACCTA
1 GGCCCTTGGT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTA
*
32956065 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTT
1 GGCCCTTGGT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * * * * * *
32956107 GGTGCCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGC-ACCTT
1 GG-CCCTTG-GTGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
** * * * * * *
32956150 GGTGCTTGGATATACGGGAGCCTCGAGCAGCATC-G-ATACCTT
1 GGCCCTTGG-TGTGCGAGAGCCTCGGGCACCATCGGCA-ACCTA
*** * * * *
32956192 GGTGGTTGGATGTGC-AGGAGCCTCGGACACCATTGGAAAACTA
1 GGCCCTTGG-TGTGCGA-GAGCCTCGGGCACCATCGGCAACCTA
* * * *
32956235 GGCCCTTAGTCGTGCGGGAGCCTTGGGCACCATCGGC-ACCTT
1 GGCCCTTGGT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTA
** * * * *
32956277 GGTGCTTGGATGTGCGGGAGCCTCGGGCACTATCAGCAACCAA
1 GGCCCTTGG-TGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * * *
32956320 GGCCCTTAGTCGTACAAGAGCCTCGGGAACCATCGGCA
1 GGCCCTTGGT-GTGCGAGAGCCTCGGGCACCATCGGCA
32956358 CCTTGTTGCC
Statistics
Matches: 485, Mismatches: 122, Indels: 54
0.73 0.18 0.08
Matches are distributed among these distances:
40 1 0.00
41 18 0.04
42 153 0.32
43 307 0.63
44 6 0.01
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.21
Consensus pattern (42 bp):
GGCCCTTGGTGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
Found at i:32956208 original size:255 final size:256
Alignment explanation
Indices: 32955681--32956429 Score: 816
Period size: 255 Copynumber: 2.9 Consensus size: 256
32955671 CGGCACCTTG
* * * * * * * * *
32955681 GGCCCTTGGTTGTGTC-GGAGCATCGGGCACCATTGGCAACCAAGGCCCTTGGTCATGCGAGAGC
1 GGCCCTTGGATGTG-CAGGAGCCTCGGACACCATCGGAAAACTAGGCCCTTAGTCGTGCGAGAGC
* * *
32955745 CTCGGGCACCATCAGT-AACCTAGGCCCTTGGTCATGCGAGAGCCTTAGGAACCATCAGCAACTT
65 CTCGGGCACCATCA-TCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTAGGCACCATCAGCAACCT
* *
32955809 AGGCCCTTGGTCGTGCGTGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-AGATGTGTGGGAG
129 AGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGA-ATGTGTGGGAG
* * * *
32955873 CCTCGAGCAGATCGGTACCTTGGTGCTTGGATGTACGAGAGCCTCGGGCACCATTGACAAACTA
193 CCTCGAGCAGATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAGCACCATCGACAAACTA
* * * ** *
32955937 GGCCCTTGGTTGTGCAGGAGCCTCGGGA-ACCATCGG-TAACTTGGTGCTTGGAT-GTGCGAGAG
1 GGCCCTTGGATGTGCAGGAGCCTC-GGACACCATCGGAAAACTAGGCCCTTAG-TCGTGCGAGAG
* ** *
32955999 CCACGGATACCATCATCAACCTAAGG-CCTTGGTCGTGCGAGAGCCTTAGGCACCATCGGCAACC
64 CCTCGGGCACCATCATCAACCT-AGGCCCTTGGTCGTGCGAGAGCCTTAGGCACCATCAGCAACC
*
32956063 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGAATGTGCGGGAG
128 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGAATGTGTGGGAG
* * * * *
32956128 CCTCGAGCAGCATCGGCACCTTGGTGCTTGGATATACGGGAGCCTCGAGCAGCATCGA-TACCTT
193 CCTCGAGCAG-ATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAGCACCATCGACAAACTA
*** * *
32956192 GGTGGTTGGATGTGCAGGAGCCTCGGACACCATTGGAAAACTAGGCCCTTAGTCGTGCGGGAGCC
1 GGCCCTTGGATGTGCAGGAGCCTCGGACACCATCGGAAAACTAGGCCCTTAGTCGTGCGAGAGCC
* ** * ** * ** * *
32956257 TTGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACTATCAGCAACCAA
66 TCGGGCACCATCATCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTTAGGCACCATCAGCAACCTA
* * * * * *
32956320 GGCCCTTAGTCGTACAAGAGCCTCGGGAACCATCGGCACCTTGTTGCCTCGGATGTGTGGGAGCC
130 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGAATGTGTGGGAGCC
* * *
32956385 TCGAGCAGTATCAGCACCTTGGTGCCTGGATGTGCGGGAGCCTCG
195 TCGAGCAG-ATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCG
32956430 GACACTGTAA
Statistics
Matches: 415, Mismatches: 66, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
254 6 0.01
255 303 0.73
256 104 0.25
257 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (256 bp):
GGCCCTTGGATGTGCAGGAGCCTCGGACACCATCGGAAAACTAGGCCCTTAGTCGTGCGAGAGCC
TCGGGCACCATCATCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTAGGCACCATCAGCAACCTAG
GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGAATGTGTGGGAGCCT
CGAGCAGATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAGCACCATCGACAAACTA
Found at i:32956269 original size:298 final size:296
Alignment explanation
Indices: 32955716--32956434 Score: 817
Period size: 298 Copynumber: 2.4 Consensus size: 296
32955706 GGCACCATTG
* * * *
32955716 GCAACCAAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGGTCATG
1 GCAACCAAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
** * * * * *
32955781 CGAGAGCCTTAGGAACCATCAGCAACTTAGG-CCCTTGGTCGTGCGTGAGCCTCGGACACCATCG
66 CGAGAGCCTCGGGCACCATCAGCACCTT-GGTGCC-TGAT-GTGCGGGAGCCTCGGACACCATCG
* ** *
32955845 GCACCTTGGTGCCTCAGATGTGTGGGAGCCTCGAGCAGATCGGTACCTTGGTGCTTGGATGTACG
128 GCACCTTGGTGCCTCAGATATACGGGAGCCTCGAGCAGATCGATACCTTGGTGCTTGGATGTACG
* * * *
32955910 AGAGCCTCGGGCACCATTGACAAACTAGGCCCTTGGTTGTGCAGGAGCCTCGGGAACCATCGGTA
193 AGAGCCTCGGACACCATTGACAAACTAGGCCCTTAGTCGTGCAGGAGCCTCGGGAACCATCGGCA
*
32955975 ACTTGGTGCTTGGATGTGCGAGAGCCACGGATACCATCA
258 ACTTGGTGCTTGGATGTGCGAGAGCCACGGACACCATCA
* **
32956014 TCAACCTAAGG-CCTTGGTCGTGCGAGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTCGT
1 GCAACC-AAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
32956078 GCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGAATGTGCGGGAGCCTC-GAGCAGCATC
65 GCGAGAGCCTCGGGCACCATCAGCACCTTGGTGCCT-G-ATGTGCGGGAGCCTCGGA-CACCATC
** * *
32956142 GGCACCTTGGTG-CTTGGATATACGGGAGCCTCGAGCAGCATCGATACCTTGGTGGTTGGATGTG
127 GGCACCTTGGTGCCTCAGATATACGGGAGCCTCGAGCAG-ATCGATACCTTGGTGCTTGGATGTA
* * *
32956206 C-AGGAGCCTCGGACACCATTGGA-AAACTAGGCCCTTAGTCGTGCGGGAGCCTTGGGCACCATC
191 CGA-GAGCCTCGGACACCATT-GACAAACTAGGCCCTTAGTCGTGCAGGAGCCTCGGGAACCATC
* * * * *
32956269 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACTATCA
254 GGCAACTTGGTGCTTGGATGTGCGAGAGCCACGGACACCATCA
* * * * * *
32956312 GCAACCAAGGCCCTTAGTCGTACAAGAGCCTCGGGAACCATCGGC-ACCTTGTTG-CCTCGGAT-
1 GCAACCAAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG--GCCCTTGG-TC
* * * **
32956374 GTGTGGGAGCCTCGAGCAGTATCAGCACCTTGGTGCCTGGATGTGCGGGAGCCTCGGACAC
63 GTGCGAGAGCCTCGGGCACCATCAGCACCTTGGTGCCT-GATGTGCGGGAGCCTCGGACAC
32956435 TGTAACACCC
Statistics
Matches: 354, Mismatches: 54, Indels: 27
0.81 0.12 0.06
Matches are distributed among these distances:
297 53 0.15
298 292 0.82
299 9 0.03
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (296 bp):
GCAACCAAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
CGAGAGCCTCGGGCACCATCAGCACCTTGGTGCCTGATGTGCGGGAGCCTCGGACACCATCGGCA
CCTTGGTGCCTCAGATATACGGGAGCCTCGAGCAGATCGATACCTTGGTGCTTGGATGTACGAGA
GCCTCGGACACCATTGACAAACTAGGCCCTTAGTCGTGCAGGAGCCTCGGGAACCATCGGCAACT
TGGTGCTTGGATGTGCGAGAGCCACGGACACCATCA
Found at i:32956323 original size:85 final size:86
Alignment explanation
Indices: 32955671--32956387 Score: 404
Period size: 85 Copynumber: 8.4 Consensus size: 86
32955661 CAAGATCCTC
* * * * * *
32955671 CGGCACCTTGG-GCCCTTGGTTGTGTC-GGAGCATCGGGCACCATTGGCAACCAAGGCCCTTGGT
1 CGGCACCTTGGTG-CCTCGGATGTG-CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGT
* *
32955734 CATGCGAGAGCCTCGGGCACCAT
64 CGTACGAGAGCCTCGGGCACCAT
** * * * * * ** * * * *
32955757 CAGTAACCTAGG-CCCTTGG-TCATGCGAGAGCCTTAGGAACCATCAGCAACTTAGGCCCTTGGT
1 C-GGCACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGT
* * *
32955820 CGTGCGTGAGCCTCGGACACCAT
64 CGTACGAGAGCCTCGGGCACCAT
* * * * * * ** *
32955843 CGGCACCTTGGTGCCTCAGATGTGTGGGAGCCTCGAGCA-GATCGG-TACCTTGGTGCTTGGAT-
1 CGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAG-TC
32955905 GTACGAGAGCCTCGGGCACCAT
65 GTACGAGAGCCTCGGGCACCAT
* * * * * * * * * * * ** *
32955927 TGACAAACTAGG-CCCTTGGTTGTGCAGGAGCCTCGGGAACCATCGGTAA-CTTGGTGCTTGGAT
1 CGGC-ACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAG-T
* * **
32955990 -GTGCGAGAGCCACGGATACCAT
64 CGTACGAGAGCCTCGGGCACCAT
** ** * * ** *
32956012 CATCAACCTAAG-GCCTTGG-TCGTGCGAGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGT
1 CGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGT
*
32956075 CGTGCGAGAGCCTCGGGCACCAT
64 CGTACGAGAGCCTCGGGCACCAT
* * * * ** *
32956098 CGGCACCTTGGTGCCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT-
1 CGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAG-TC
* * * *
32956161 ATACGGGAGCCTCGAGCAGCAT
65 GTACGAGAGCCTCGGGCACCAT
** * * * * * * *
32956183 CGATACCTTGGTG-GTTGGATGTGCAGGAGCCTCGGACACCATTGGAAAACTAGGCCCTTAGTCG
1 CGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTCG
* * *
32956247 TGCGGGAGCCTTGGGCACCAT
66 TACGAGAGCCTCGGGCACCAT
* * * *
32956268 CGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGGGCACTATCAGCAACCAAGGCCCTTAGTCG
1 CGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTCG
* *
32956332 TACAAGAGCCTCGGGAACCAT
66 TACGAGAGCCTCGGGCACCAT
* *
32956353 CGGCACCTTGTTGCCTCGGATGTGTGGGAGCCTCG
1 CGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCG
32956388 AGCAGTATCA
Statistics
Matches: 478, Mismatches: 135, Indels: 36
0.74 0.21 0.06
Matches are distributed among these distances:
84 76 0.16
85 243 0.51
86 150 0.31
87 9 0.02
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (86 bp):
CGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTCG
TACGAGAGCCTCGGGCACCAT
Found at i:32956384 original size:43 final size:42
Alignment explanation
Indices: 32955821--32956430 Score: 197
Period size: 43 Copynumber: 14.4 Consensus size: 42
32955811 GCCCTTGGTC
* * *
32955821 GTGCGTGAGCCTC-GGACACCATCGGCACCTTGGTGCCTCAGAT
1 GTGCGGGAGCCTCGGGA-ACCATCAGCACCTTGGTGCCT-GGAT
* * * * * * *
32955864 GTGTGGGAGCCTCGAGCA-GATCGGTACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGGGAACCATCAGCACCTTGGTGCCTGGAT
* * * * * * * *
32955905 GTACGAGAGCCTCGGGCACCAT-TGACAAACTAGG-CCCTTGGTT
1 GTGCGGGAGCCTCGGGAACCATCAG-C-ACCTTGGTGCC-TGGAT
* * * * *
32955948 GTGCAGGAGCCTCGGGAACCATCGGTAACTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGGGAACCATCAGCACCTTGGTGCCTGGAT
* * * **
32955990 GTGCGAGAGCCAC-GGATACCATCATCAACCTAAG-GCCTTGG-T
1 GTGCGGGAGCCTCGGGA-ACCATCAGC-ACCTTGGTGCC-TGGAT
* ** * * * *
32956032 CGTGCGAGAGCCTTAGGCACCATCGGCAACCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGGGAACCATCAGC-ACCTTGGTGCC-TGGAT
* * * *
32956075 CGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGAAT
1 -GTGCGGGAGCCTCGGGAACCATCAGCACCTTGGTGCCT-GGAT
* * * * *
32956119 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGGGAACCATCAGCACCTTGGTGCCTGGAT
* * * * * * **
32956161 ATACGGGAGCCTCGAGCAGCATC-GATACCTTGGTGGTTGGAT
1 GTGCGGGAGCCTCGGGAACCATCAG-CACCTTGGTGCCTGGAT
* ** * * * * *
32956203 GTGCAGGAGCCTC-GGACACCATTGGAAAACTAGG-CCCT-TAGT
1 GTGCGGGAGCCTCGGGA-ACCATCAG-CACCTTGGTGCCTGGA-T
* * * *
32956245 CGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGAACCATCAGCACCTTGGTGCCTGGAT
* * ** * *
32956288 GTGCGGGAGCCTCGGGCACTATCAGCAACCAAGG-CCCT-TAGT
1 GTGCGGGAGCCTCGGGAACCATCAGC-ACCTTGGTGCCTGGA-T
* ** * *
32956330 CGTACAAGAGCCTCGGGAACCATCGGCACCTTGTTGCCTCGGAT
1 -GTGCGGGAGCCTCGGGAACCATCAGCACCTTGGTGCCT-GGAT
* * * **
32956374 GTGTGGGAGCCTCGAGCAGTATCAGCACCTTGGTGCCTGGAT
1 GTGCGGGAGCCTCGGGAACCATCAGCACCTTGGTGCCTGGAT
32956416 GTGCGGGAGCCTCGG
1 GTGCGGGAGCCTCGG
32956431 ACACTGTAAC
Statistics
Matches: 422, Mismatches: 116, Indels: 59
0.71 0.19 0.10
Matches are distributed among these distances:
41 25 0.06
42 162 0.38
43 225 0.53
44 9 0.02
45 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.21
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGGAACCATCAGCACCTTGGTGCCTGGAT
Found at i:32956426 original size:85 final size:84
Alignment explanation
Indices: 32956048--32956430 Score: 283
Period size: 85 Copynumber: 4.5 Consensus size: 84
32956038 AGAGCCTTAG
* *
32956048 GCACCATCGGCAACCTAGGCCCTTG-GTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 GCACCATCAGC-ACCTAGGCCC-TGAGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-
*
32956112 CTCGAATGTGCGGGAGCCTCGA
63 CTCGGATGTGCGGGAGCCTCGA
* * * * * * * * * ** *
32956134 GCAGCATCGGCACCTTGGTGCTTG-GAT-ATACGGGAGCCTCGAGCAGCATCGATACCTTGGTGG
1 GCACCATCAGCACCTAGG-CCCTGAG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
* *
32956197 TTGGATGTGCAGGAGCCTCG-
64 TCGGATGTGCGGGAGCCTCGA
** * * * *
32956217 GACACCATTGGAAAACTAGGCCCTTAGTCGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGC
1 G-CACCATCAG-CACCTAGGCCCTGAGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
* *
32956282 TTGGATGTGCGGGAGCCTCGG
64 TCGGATGTGCGGGAGCCTCGA
* * * * ** * *
32956303 GCACTATCAGCAACCAAGGCCCTTAGTCGTACAAGAGCCTCGGGAACCATCGGCACCTTGTTGCC
1 GCACCATCAGC-ACCTAGGCCCTGAGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-C
*
32956368 TCGGATGTGTGGGAGCCTCGA
64 TCGGATGTGCGGGAGCCTCGA
** * *
32956389 GCAGTATCAGCACCTTGGTGCCTG-GAT-GTGCGGGAGCCTCGG
1 GCACCATCAGCACCTAGG-CCCTGAG-TCGTGCGGGAGCCTCGG
32956431 ACACTGTAAC
Statistics
Matches: 231, Mismatches: 55, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
83 1 0.00
84 27 0.12
85 157 0.68
86 46 0.20
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.20
Consensus pattern (84 bp):
GCACCATCAGCACCTAGGCCCTGAGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTC
GGATGTGCGGGAGCCTCGA
Found at i:32957904 original size:40 final size:40
Alignment explanation
Indices: 32957834--32957962 Score: 183
Period size: 39 Copynumber: 3.3 Consensus size: 40
32957824 GACTAGCTCA
*
32957834 AATGCCTTCGGGAC-AAACCC-GGTTATAGTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGGTT-TAGTAACTCGCACG
*
32957873 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACG
* *
32957913 AATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACG
*
32957952 AACGCCTTCGG
1 AATGCCTTCGG
32957963 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
39 48 0.59
40 30 0.37
41 4 0.05
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACG
Found at i:32961501 original size:40 final size:39
Alignment explanation
Indices: 32961465--32961571 Score: 151
Period size: 39 Copynumber: 2.7 Consensus size: 39
32961455 ATATCCGGAC
*
32961465 TAAGATCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
* * * *
32961505 TAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
32961544 TAAGTCCCGAAGGCATTCGTGCGAGTTA
1 TAAGT-CCGAAGGCATTCGTGCGAGTTA
32961572 CTATAACCGG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.58
40 25 0.42
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
Found at i:32961572 original size:40 final size:40
Alignment explanation
Indices: 32961471--32961600 Score: 183
Period size: 40 Copynumber: 3.3 Consensus size: 40
32961461 GGACTAAGAT
* * *
32961471 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
*
32961510 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* *
32961550 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTC
32961590 CCGAAGGCATT
1 CCGAAGGCATT
32961601 TGAGCTAGTC
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 34 0.41
40 39 0.48
41 9 0.11
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:32961633 original size:79 final size:79
Alignment explanation
Indices: 32961470--32961635 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 79
32961460 CGGACTAAGA
* * *
32961470 TCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCACTA
*
32961535 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * * * *
32961549 CCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTCCCGAAGGCATTTGAGCTAGTCG
1 TCCGAAGGCATTCGTGCGAGTTAATA-AATCC-GGGTTAAG-CCCGAAGGCATTTGAGCGAGTCA
* * *
32961612 TTATATCC-GGTTAAAT
63 CTAAACCCGGGTTAAAT
32961628 TCCGAAGG
1 TCCGAAGG
32961636 TACGTGATTC
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
79 40 0.56
80 31 0.44
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCACTA
AACCCGGGTTAAAT
Found at i:32976013 original size:40 final size:40
Alignment explanation
Indices: 32975928--32976078 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
32975918 AATTGAATGA
* * *
32975928 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
32975968 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
32976009 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
32976048 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
32976079 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:32976092 original size:40 final size:40
Alignment explanation
Indices: 32975965--32976094 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
32975955 ATGCTGGAAA
* * * *
32975965 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
32976005 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
32976045 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
32976085 TTATATCCGG
1 TTATATCCGG
32976095 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:32979595 original size:46 final size:46
Alignment explanation
Indices: 32979528--32979702 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
32979518 TGTAACCCGC
32979528 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
32979574 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
32979624 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
32979667 CCATAAGTGAACTCGGACTCAACTCGACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
32979703 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:32979648 original size:93 final size:93
Alignment explanation
Indices: 32979536--32979706 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
32979526 GCCCATAAGT
** *
32979536 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32979601 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
32979629 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
32979694 CGAGTTCGGATGC
66 CGAGCTCGGATGC
32979707 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:32982669 original size:46 final size:45
Alignment explanation
Indices: 32982617--32982820 Score: 179
Period size: 46 Copynumber: 4.5 Consensus size: 45
32982607 GTCGATGCCG
* * *
32982617 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CGTAGCCGACGCA
32982663 TGTCCCAGACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
* *
32982707 TGTCCCAGACATGTCTGACACTG-GCTAACATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGC--ACATCTCGTA-GCCGACGCA
* * * * *
32982753 TGTCCCAGACATGTCTTACAGTG-GCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-T-C-GTAGCCGACGCA
*
32982799 TGTCCCAGACATGACTTACACT
1 TGTCCCAGACATGTCTTACACT
32982821 AGCCCTCGTC
Statistics
Matches: 136, Mismatches: 12, Indels: 20
0.81 0.07 0.12
Matches are distributed among these distances:
43 5 0.04
44 33 0.24
45 3 0.02
46 95 0.70
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
Found at i:32982840 original size:92 final size:91
Alignment explanation
Indices: 32982660--32982875 Score: 222
Period size: 92 Copynumber: 2.4 Consensus size: 91
32982650 CCGTGCTGAC
* *
32982660 GCATGTCCCAGACATGTCTTACACTAG-CACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
1 GCATGTCCCAGACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGACTG
* * *
32982724 ACACTGGCTAACATCTCGAGGCCGAT
66 ACACTAGCCAACATCTCAAGGCCGAT
* * * * *
32982750 GCATGTCCCAGACATGTCTTACAGTGGCTCTCATACT-GTGGCTGATGCATGTCCCAGACATGAC
1 GCATGTCCCAGACATGTCTTACACTGGC-CACAT-CTCGTAGCCGACGCATGTCCCAGACATGAC
* ** * *
32982814 TTACACTAGCCCTCGTCTCAATGCCGAT
64 TGACACTAGCCAACATCTCAAGGCCGAT
*
32982842 GCCATGT-CCATACATGGTCTTACACTGGCACACA
1 G-CATGTCCCAGACAT-GTCTTACACTGGC-CACA
32982876 AATCTCATGT
Statistics
Matches: 102, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
90 25 0.25
92 55 0.54
93 22 0.22
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (91 bp):
GCATGTCCCAGACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGACTG
ACACTAGCCAACATCTCAAGGCCGAT
Found at i:32982843 original size:46 final size:44
Alignment explanation
Indices: 32982660--32982867 Score: 163
Period size: 46 Copynumber: 4.6 Consensus size: 44
32982650 CCGTGCTGAC
*
32982660 GCATGTCCCAGACATGTCTTACACTAGCACATC-TCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCATC-TATGCCGAT
* * * * *
32982704 GCATGTCCCAGACATGTCTGACACTGGCTAACATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * * *
32982750 GCATGTCCCAGACATGTCTTACAGTGGCTC-TCATACTGTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCAT-CTAT-GCCGAT
* * *
32982796 GCATGTCCCAGACATGACTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
*
32982842 GCCATGT-CCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
32982868 GGCACACAAA
Statistics
Matches: 132, Mismatches: 20, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
43 3 0.02
44 28 0.21
45 4 0.03
46 80 0.61
47 17 0.13
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.25
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCATCTATGCCGAT
Found at i:32985449 original size:46 final size:46
Alignment explanation
Indices: 32985382--32985556 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
32985372 TGTAACCCGC
32985382 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
32985428 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
32985478 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
32985521 CCATAAGTGAACTCGGACTCAACTCGACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
32985557 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:32985502 original size:93 final size:93
Alignment explanation
Indices: 32985390--32985560 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
32985380 GCCCATAAGT
** *
32985390 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32985455 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
32985483 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
32985548 CGAGTTCGGATGC
66 CGAGCTCGGATGC
32985561 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:32992925 original size:27 final size:28
Alignment explanation
Indices: 32992895--32992964 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
32992885 ATAATAAGTC
*
32992895 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
32992922 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
32992950 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32992965 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:33000847 original size:27 final size:28
Alignment explanation
Indices: 33000817--33000886 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
33000807 ATAATAAGTC
*
33000817 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
33000844 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
33000872 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33000887 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:33003094 original size:30 final size:30
Alignment explanation
Indices: 33003060--33003119 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
33003050 TCTTTTGATT
33003060 CACTCGTTTCTT-TTGTTTCAAATT-TTTTTC
1 CACTC-TTTCTTCTTG-TTCAAATTCTTTTTC
* *
33003090 CACTCTTTTTTCTTGTTCACATTCTTTTTC
1 CACTCTTTCTTCTTGTTCAAATTCTTTTTC
33003120 TCTCTCAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.12, C:0.23, G:0.05, T:0.60
Consensus pattern (30 bp):
CACTCTTTCTTCTTGTTCAAATTCTTTTTC
Found at i:33003164 original size:18 final size:18
Alignment explanation
Indices: 33003141--33003186 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
33003131 CTTTTTATTC
33003141 TCTTTTTCAATCTCATTT
1 TCTTTTTCAATCTCATTT
* * *
33003159 TCTTTTTCATTTTCTTTT
1 TCTTTTTCAATCTCATTT
*
33003177 TGTTTTTCAA
1 TCTTTTTCAA
33003187 AGGCTTTTTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.13, C:0.17, G:0.02, T:0.67
Consensus pattern (18 bp):
TCTTTTTCAATCTCATTT
Found at i:33003184 original size:12 final size:12
Alignment explanation
Indices: 33003153--33003177 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33003143 TTTTTCAATC
33003153 TCATTTTCTTTT
1 TCATTTTCTTTT
33003165 TCATTTTCTTTT
1 TCATTTTCTTTT
33003177 T
1 T
33003178 GTTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:33003194 original size:12 final size:12
Alignment explanation
Indices: 33003179--33003210 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
33003169 TTTCTTTTTG
33003179 TTTTTCAAAGGC
1 TTTTTCAAAGGC
33003191 TTTTTCAAAGGC
1 TTTTTCAAAGGC
*
33003203 TTCTTCAA
1 TTTTTCAA
33003211 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (12 bp):
TTTTTCAAAGGC
Found at i:33004247 original size:11 final size:11
Alignment explanation
Indices: 33004230--33004271 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
33004220 ATTAAACACC
*
33004230 TTTTTTTTTAGA
1 TTTTTTTTGA-A
33004242 TTTTTTTTGAA
1 TTTTTTTTGAA
33004253 TTTTTTTTGAA
1 TTTTTTTTGAA
33004264 TTTTTTTT
1 TTTTTTTT
33004272 AACTTGTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 20 0.69
12 9 0.31
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (11 bp):
TTTTTTTTGAA
Done.