Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 110 of 292
Found at i:33579497 original size:27 final size:27
Alignment explanation
Indices: 33579454--33579527 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
33579444 AAATGACTAA
*
33579454 AATACCCCTATTA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
33579481 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
*
33579508 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
33579528 TGATGAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 3 0.08
27 35 0.90
28 1 0.03
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:33580782 original size:9 final size:9
Alignment explanation
Indices: 33580768--33580824 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
33580758 TTTTGAAAAC
33580768 ATGATATGT
1 ATGATATGT
*
33580777 ATGATATGCAC
1 ATGATATG--T
*
33580788 ATGACATGT
1 ATGATATGT
*
33580797 ATGATATGCAC
1 ATGATATG--T
33580808 ATGATATGT
1 ATGATATGT
33580817 ATGATATG
1 ATGATATG
33580825 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:33580791 original size:20 final size:20
Alignment explanation
Indices: 33580766--33580828 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
33580756 GATTTTGAAA
33580766 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
33580786 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
33580806 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
33580826 ACA
1 ACA
33580829 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:33580938 original size:24 final size:24
Alignment explanation
Indices: 33580882--33581071 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
33580872 GAGGAAGTGA
33580882 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
33580905 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
33580929 AAAAGGGCTTATGCCCCAGTTAGC
1 AAAAGGGCTTATGCCCCAGTTATC
33580953 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
33580977 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
33581000 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
33581024 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
33581048 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
33581072 ATGATAAAGC
Statistics
Matches: 151, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
23 43 0.28
24 97 0.64
25 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:33581005 original size:71 final size:71
Alignment explanation
Indices: 33580880--33581071 Score: 271
Period size: 71 Copynumber: 2.7 Consensus size: 71
33580870 TGGAGGAAGT
* *
33580880 GAAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCC
1 GAAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
33580945 CAGTTA
66 CAGTTA
* *
33580951 GCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCC
1 GAAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCC
33581015 CCAGTTA
65 CCAGTTA
* * *
33581022 TAAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 GAAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTACGCC-CCAGTTAT
33581072 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 8, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
71 76 0.70
72 33 0.30
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
GAAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
CAGTTA
Found at i:33581028 original size:47 final size:47
Alignment explanation
Indices: 33580881--33581072 Score: 278
Period size: 47 Copynumber: 4.0 Consensus size: 47
33580871 GGAGGAAGTG
33580881 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* **
33580928 CAAAAGGGCTTATGCCCCAGTTAGCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTA-TTAAAGGGCTTATGCCCCAGTTAT
* *
33580976 CAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
33581023 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATT-AAAG-GGCTTATGCC-CCAGTTAT
33581072 A
1 A
33581073 TGATAAAGCA
Statistics
Matches: 131, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
47 66 0.50
48 53 0.40
49 12 0.09
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:33581302 original size:31 final size:31
Alignment explanation
Indices: 33581264--33581327 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
33581254 CCGTTTACGT
*
33581264 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
33581295 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
33581326 AA
1 AA
33581328 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:33586821 original size:30 final size:30
Alignment explanation
Indices: 33586776--33586835 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
33586766 ATTTAATATG
33586776 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
33586806 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
33586836 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:33589363 original size:23 final size:24
Alignment explanation
Indices: 33589331--33589377 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
33589321 AGACCGTATC
*
33589331 TAGATCGATTTGTTG-TTGTATTCA
1 TAGATCGATTTCTTGATT-TATTCA
33589355 TAGAT-GATTTCTTGATTTATTCA
1 TAGATCGATTTCTTGATTTATTCA
33589378 AAAAATGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.23, C:0.09, G:0.17, T:0.51
Consensus pattern (24 bp):
TAGATCGATTTCTTGATTTATTCA
Found at i:33591364 original size:44 final size:43
Alignment explanation
Indices: 33591230--33591384 Score: 146
Period size: 44 Copynumber: 3.7 Consensus size: 43
33591220 ATCTTGTACA
*
33591230 ATGCCAACGTCCCAGACGTGGTCTTACGTGTAACA-A-AATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA-ATACAA-ATTG
* *
33591273 ATGCC-ACTGTCCTAGACAG-GGTCTTACA---AAAT-CAAATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAAATACAAAT-TG
*
33591313 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATTACAAGTTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAA-TACAAATTG
* *
33591357 ATGCCAACATCCCAGATGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
33591385 CGACAACACA
Statistics
Matches: 92, Mismatches: 8, Indels: 23
0.75 0.07 0.19
Matches are distributed among these distances:
39 4 0.04
40 27 0.29
41 2 0.02
42 2 0.02
43 24 0.26
44 29 0.32
45 4 0.04
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATACAAATTG
Found at i:33599255 original size:29 final size:29
Alignment explanation
Indices: 33599183--33599299 Score: 98
Period size: 29 Copynumber: 4.1 Consensus size: 29
33599173 CATACATGCT
* * *
33599183 TATGGCCCACTAGGCCTAA-TCTTATTCA
1 TATGGCCCAGTAGGCCCAATTCATATTCA
* * * *
33599211 AATGGCCCA-TCTGGCCCAGTTCATATTCT
1 TATGGCCCAGT-AGGCCCAATTCATATTCA
*
33599240 TATGGCCCGGTAGGCCCAATTC-TCATTCA
1 TATGGCCCAGTAGGCCCAATTCAT-ATTCA
* *
33599269 TATGGCCCATTAGGCCCAAATCATATT-A
1 TATGGCCCAGTAGGCCCAATTCATATTCA
33599297 TAT
1 TAT
33599300 TCATGCTCAC
Statistics
Matches: 70, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
27 1 0.01
28 18 0.26
29 49 0.70
30 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (29 bp):
TATGGCCCAGTAGGCCCAATTCATATTCA
Found at i:33599285 original size:58 final size:57
Alignment explanation
Indices: 33599181--33599295 Score: 142
Period size: 58 Copynumber: 2.0 Consensus size: 57
33599171 TACATACATG
* * **
33599181 CTTATGGCCCACTAGGCCTAATCTTATTCAAATGGCCCATCTGGCCCAGTTCATATT
1 CTTATGGCCCACTAGGCCCAATCTCATTCAAATGGCCCATCTGGCCCAAATCATATT
** *
33599238 CTTATGGCCCGGTAGGCCCAATTCTCATTCATATGGCCCAT-TAGGCCCAAATCATATT
1 CTTATGGCCCACTAGGCCCAA-TCTCATTCAAATGGCCCATCT-GGCCCAAATCATATT
33599296 ATATTCATGC
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
57 19 0.39
58 30 0.61
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (57 bp):
CTTATGGCCCACTAGGCCCAATCTCATTCAAATGGCCCATCTGGCCCAAATCATATT
Found at i:33599545 original size:15 final size:15
Alignment explanation
Indices: 33599510--33599560 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
33599500 CGTAGCCCAA
* *
33599510 CTTTCAGCTTTTTGG
1 CTTTTAGCTTTTCGG
33599525 CATTTTAGCTTTTCGG
1 C-TTTTAGCTTTTCGG
*
33599541 CTTTTCGAC-TTTCGG
1 CTTTTAG-CTTTTCGG
33599556 CTTTT
1 CTTTT
33599561 GCTGATTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 17 0.55
16 14 0.45
ACGTcount: A:0.08, C:0.22, G:0.18, T:0.53
Consensus pattern (15 bp):
CTTTTAGCTTTTCGG
Found at i:33601898 original size:46 final size:44
Alignment explanation
Indices: 33601845--33602012 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 44
33601835 TGTTTGGGCA
*
33601845 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGC-AA-G
* ** * *
33601891 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGACATGTAACTAGCCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTCATG-GA-T-GCAAG
*
33601938 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGC-AA-G
* *
33601984 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
33602013 GCTTATGGGC
Statistics
Matches: 102, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
43 2 0.02
44 2 0.02
45 1 0.01
46 61 0.60
47 31 0.30
48 1 0.01
49 2 0.02
50 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAG
Found at i:33602002 original size:93 final size:93
Alignment explanation
Indices: 33601843--33602013 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
33601833 GATGTTTGGG
* * * *
33601843 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGTT
33601908 GAGTCCGAGTTCGAGACATGTAACTAGC
66 GAGTCCGAGTTCGAGACATGTAACTAGC
* * *
33601936 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGTT
33602001 GAGTCCGAGTTCG
66 GAGTCCGAGTTCG
33602014 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGAGACATGTAACTAGC
Found at i:33605786 original size:29 final size:29
Alignment explanation
Indices: 33605746--33605848 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
33605736 GTTGAGAGAT
*
33605746 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
*
33605775 TGGCACTAAGTGTGCAAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
33605804 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
33605833 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
33605849 CGGCTGATTA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 5 0.07
29 62 0.93
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:33618664 original size:29 final size:29
Alignment explanation
Indices: 33618624--33618726 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
33618614 GTTGAGAGAT
*
33618624 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
33618653 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
33618682 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
33618711 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
33618727 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:33625734 original size:29 final size:29
Alignment explanation
Indices: 33625656--33625759 Score: 99
Period size: 29 Copynumber: 3.6 Consensus size: 29
33625646 TACATACATG
*
33625656 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
33625684 CAAATGGCCCATCT-GGCTCAATTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCATATT
* *
33625713 CTTATGGCCCGCTAGGCCCAATTC-TCATT
1 CATATGGCCCACTAGGCCCAATTCAT-ATT
*
33625742 CGA-ATGGCCCATTAGGCC
1 C-ATATGGCCCACTAGGCC
33625760 TAAATCGTAT
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
28 19 0.31
29 42 0.69
ACGTcount: A:0.23, C:0.32, G:0.17, T:0.28
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:33625880 original size:19 final size:19
Alignment explanation
Indices: 33625844--33625880 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
33625834 AGGCCTATCA
*
33625844 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
33625863 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
33625881 TCCACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:33627248 original size:8 final size:8
Alignment explanation
Indices: 33627237--33627276 Score: 80
Period size: 8 Copynumber: 5.0 Consensus size: 8
33627227 AAAATTCAAA
33627237 ATTTTTGG
1 ATTTTTGG
33627245 ATTTTTGG
1 ATTTTTGG
33627253 ATTTTTGG
1 ATTTTTGG
33627261 ATTTTTGG
1 ATTTTTGG
33627269 ATTTTTGG
1 ATTTTTGG
33627277 GGCGTTACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.12, C:0.00, G:0.25, T:0.62
Consensus pattern (8 bp):
ATTTTTGG
Found at i:33628146 original size:43 final size:43
Alignment explanation
Indices: 33628080--33628236 Score: 194
Period size: 43 Copynumber: 3.7 Consensus size: 43
33628070 ATCTTGTACA
33628080 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
* * * *
33628123 ATGCCACTGTCCCAGACAG-GGTCTTACACGGAACCAAATA-CG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
* *
33628165 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCACAA-GTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGT-AATCA-AATATCG
* *
33628209 ATGCCAATGTCCCAGGCATGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
33628237 CGATAACACA
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 38 0.40
44 30 0.31
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:33628237 original size:86 final size:85
Alignment explanation
Indices: 33628080--33628238 Score: 248
Period size: 86 Copynumber: 1.9 Consensus size: 85
33628070 ATCTTGTACA
* *
33628080 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAGACAGGGT
33628145 CTTACACGGAACCAAATACG
66 CTTACACGGAACCAAATACG
* * *
33628165 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCACAA-GTCGATGCCAATGTCCCAGGCATG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-AATATCGATGCCAATGTCCCAGACAGG
33628229 GTCTTACACG
64 GTCTTACACG
33628239 ATAACACATA
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
85 30 0.45
86 35 0.52
87 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAGACAGGGT
CTTACACGGAACCAAATACG
Found at i:33635785 original size:44 final size:44
Alignment explanation
Indices: 33635722--33635809 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
33635712 TGTTACATTT
*
33635722 AGTGGTATCAGAGCTATGATTTAGTCAATTCTCAAAGTAACATA
1 AGTGGTATCAGAGCTATGATTTAGTCAATTCTCAAACTAACATA
33635766 AGTGGTATCAGAGCTATGATTTAGTCAATTCTCAAACTAACATA
1 AGTGGTATCAGAGCTATGATTTAGTCAATTCTCAAACTAACATA
33635810 GCGTATGTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (44 bp):
AGTGGTATCAGAGCTATGATTTAGTCAATTCTCAAACTAACATA
Found at i:33643783 original size:24 final size:24
Alignment explanation
Indices: 33643751--33643800 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
33643741 AATGATGTAT
33643751 AATGTCTCCCTTGTATGTAACCGA
1 AATGTCTCCCTTGTATGTAACCGA
33643775 AATGTCTCCCTTGTATGTAACCGA
1 AATGTCTCCCTTGTATGTAACCGA
33643799 AA
1 AA
33643801 ATCACTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (24 bp):
AATGTCTCCCTTGTATGTAACCGA
Found at i:33643891 original size:9 final size:9
Alignment explanation
Indices: 33643877--33643950 Score: 54
Period size: 9 Copynumber: 8.7 Consensus size: 9
33643867 GACACCTGCA
33643877 ATTAAACAC
1 ATTAAACAC
33643886 ATTAAA-AC
1 ATTAAACAC
*
33643894 ---AAACAT
1 ATTAAACAC
33643900 ATTAAACAC
1 ATTAAACAC
*
33643909 ATTTAAGCAC
1 A-TTAAACAC
33643919 TTATTAAACAC
1 --ATTAAACAC
33643930 A--AAACAC
1 ATTAAACAC
33643937 ATTAAACAC
1 ATTAAACAC
33643946 -TTAAA
1 ATTAAA
33643951 TAAATGAACT
Statistics
Matches: 52, Mismatches: 4, Indels: 19
0.69 0.05 0.25
Matches are distributed among these distances:
5 3 0.06
6 1 0.02
7 7 0.13
8 7 0.13
9 19 0.37
10 7 0.13
11 7 0.13
12 1 0.02
ACGTcount: A:0.55, C:0.19, G:0.01, T:0.24
Consensus pattern (9 bp):
ATTAAACAC
Found at i:33644195 original size:50 final size:52
Alignment explanation
Indices: 33644086--33644201 Score: 148
Period size: 50 Copynumber: 2.3 Consensus size: 52
33644076 TAAACAGATG
* **
33644086 AGTTACTTAATGCAAGACTTAATTTAATAATGCAGACTTAAACTAACATGGG
1 AGTTACATAATGCAAGACTTAATTTAATAATGCAGACTTAAACTAACATGAA
* * *
33644138 AGTTACATAATGCAAGTCATT-ATTT-ATGATGCATACTT-AACTAACATGAA
1 AGTTACATAATGCAAGAC-TTAATTTAATAATGCAGACTTAAACTAACATGAA
33644188 AGTTACATAATGCA
1 AGTTACATAATGCA
33644202 TTACTTTATT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
50 24 0.42
51 11 0.19
52 20 0.35
53 2 0.04
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (52 bp):
AGTTACATAATGCAAGACTTAATTTAATAATGCAGACTTAAACTAACATGAA
Found at i:33644294 original size:19 final size:19
Alignment explanation
Indices: 33644254--33644294 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
33644244 TAAAATATTC
* *
33644254 AAACTTATTAATTTAAATA
1 AAACTTATTAAATTAAAAA
33644273 AAACTTATTAAATTAAAAA
1 AAACTTATTAAATTAAAAA
33644292 AAA
1 AAA
33644295 TCCTTGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
AAACTTATTAAATTAAAAA
Found at i:33646261 original size:36 final size:36
Alignment explanation
Indices: 33646214--33646295 Score: 130
Period size: 36 Copynumber: 2.3 Consensus size: 36
33646204 AAGACTTGTA
33646214 TACTGTTACTACA-CTGATTACTGTTACTGCACTGAT
1 TACTGTTACTACATC-GATTACTGTTACTGCACTGAT
*
33646250 TACTGTTACTACATCGGTTACTGTTACTGCACTGAT
1 TACTGTTACTACATCGATTACTGTTACTGCACTGAT
*
33646286 TATTGTTACT
1 TACTGTTACT
33646296 GTAATGGGCC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 42 0.98
37 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.41
Consensus pattern (36 bp):
TACTGTTACTACATCGATTACTGTTACTGCACTGAT
Found at i:33646296 original size:18 final size:18
Alignment explanation
Indices: 33646214--33646296 Score: 114
Period size: 18 Copynumber: 4.6 Consensus size: 18
33646204 AAGACTTGTA
*
33646214 TACTGTTACTACACTGAT
1 TACTGTTACTGCACTGAT
33646232 TACTGTTACTGCACTGAT
1 TACTGTTACTGCACTGAT
* *
33646250 TACTGTTACTACA-TCGGT
1 TACTGTTACTGCACT-GAT
33646268 TACTGTTACTGCACTGAT
1 TACTGTTACTGCACTGAT
*
33646286 TATTGTTACTG
1 TACTGTTACTG
33646297 TAATGGGCCA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
17 1 0.02
18 55 0.96
19 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (18 bp):
TACTGTTACTGCACTGAT
Found at i:33654483 original size:60 final size:60
Alignment explanation
Indices: 33654390--33654509 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
33654380 AACCCCTATC
33654390 TTTGGCTAGTAGGGTTATAAGTTTATTTTGGTAAAAACATGATAGAATGGGCCTACTGGT
1 TTTGGCTAGTAGGGTTATAAGTTTATTTTGGTAAAAACATGATAGAATGGGCCTACTGGT
33654450 TTTGGCTAGTAGGGTTATAAGTTTATTTTGGTAAAAACATGATAGAATGGGCCTACTGGT
1 TTTGGCTAGTAGGGTTATAAGTTTATTTTGGTAAAAACATGATAGAATGGGCCTACTGGT
33654510 CTAGTGGATA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.28, C:0.08, G:0.27, T:0.37
Consensus pattern (60 bp):
TTTGGCTAGTAGGGTTATAAGTTTATTTTGGTAAAAACATGATAGAATGGGCCTACTGGT
Found at i:33656726 original size:45 final size:45
Alignment explanation
Indices: 33656675--33656847 Score: 192
Period size: 45 Copynumber: 3.8 Consensus size: 45
33656665 TGTAACCCGC
* *
33656675 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGCGTTCGCAT
* *
33656720 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G--G-C--GTTCGCAT
* * *
33656770 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGCGTTCGCAT
*
33656812 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
33656848 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 2 0.02
45 58 0.55
46 2 0.02
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGCGTTCGCAT
Found at i:33656793 original size:92 final size:92
Alignment explanation
Indices: 33656682--33656851 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
33656672 CGCCCATAAG
* *
33656682 CGAACTCGGACTCAACTCAACAAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACAAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33656747 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
* *
33656774 CGAACTCGGACTCAACTCAACGAGTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACAAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33656839 CGAGTTCGGATGC
66 CGAGTTCGGATGC
33656852 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACAAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:33660105 original size:40 final size:39
Alignment explanation
Indices: 33659994--33660143 Score: 140
Period size: 40 Copynumber: 3.8 Consensus size: 39
33659984 TTAATCACGT
* * *
33659994 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
33660034 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
33660074 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
33660114 GCATATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATGCCTTCGGGTCTTAGCCCGGATAT
33660144 CATTCAATTT
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
38 13 0.14
39 11 0.12
40 67 0.74
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:33667910 original size:40 final size:40
Alignment explanation
Indices: 33667865--33668031 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
33667855 CGGAATATAA
*
33667865 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
33667905 CCGGATAGAGTAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
33667945 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
33667985 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
33668024 CCGGATAT
1 CCGGATAT
33668032 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:33676647 original size:24 final size:24
Alignment explanation
Indices: 33676615--33676677 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
33676605 AATCTCAAAT
*
33676615 GCACTATGTGTGCGATTTATTATG
1 GCACTATGTGTGCGATTTACTATG
33676639 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
33676663 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
33676678 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:33678413 original size:93 final size:93
Alignment explanation
Indices: 33678284--33678455 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
33678274 CGCCCATAAG
* *
33678284 CGAACTCAGACTCAACTCAAAGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCAGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
33678349 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
33678377 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
33678442 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
33678456 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:33678452 original size:46 final size:46
Alignment explanation
Indices: 33678277--33678452 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
33678267 TGTAACCCGC
* * * *
33678277 CCATAAGCGAACTCAGACTCAACTCAAAGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
33678323 CCATAAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
33678373 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
33678416 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGA
33678453 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:33678471 original size:46 final size:44
Alignment explanation
Indices: 33678328--33678471 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 44
33678318 CGCATCCATA
* *
33678328 AGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
33678375 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
33678421 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
33678467 AGTGA
1 AGTGA
33678472 CATGTCACTT
Statistics
Matches: 78, Mismatches: 11, Indels: 16
0.74 0.10 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 33 0.42
47 29 0.37
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:33687979 original size:49 final size:49
Alignment explanation
Indices: 33687921--33688303 Score: 641
Period size: 49 Copynumber: 7.9 Consensus size: 49
33687911 GTATGAGATG
* *
33687921 TATATATGTGATACGGCCTAATGGCCAATGTGATGAACGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
33687970 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAACGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
33688019 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
33688068 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
33688115 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
33688164 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
33688211 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
33688260 TATATATGTGATAAGGCCTAATGGCCAATGTGATG-ATAGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAAT-GTGAAA
33688304 TATATGTGTG
Statistics
Matches: 315, Mismatches: 14, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 88 0.28
48 2 0.01
49 225 0.71
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:33688145 original size:96 final size:96
Alignment explanation
Indices: 33687920--33688303 Score: 662
Period size: 96 Copynumber: 4.0 Consensus size: 96
33687910 TGTATGAGAT
* * *
33687920 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAACGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
* *
33687985 GCCTAATGGCCAATGTGATGAACGTGAAAGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
33688016 GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA
33688081 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
64 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
33688114 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
33688179 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* * *
33688210 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
33688275 GCCTAATGGCCAATGTGATG-ATAGTGAAA
66 GCCTAATGGCCAATGTGATGAAT-GTGAAA
33688304 TATATGTGTG
Statistics
Matches: 277, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
95 2 0.01
96 184 0.66
98 91 0.33
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (96 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:33688182 original size:145 final size:145
Alignment explanation
Indices: 33687920--33688303 Score: 632
Period size: 145 Copynumber: 2.6 Consensus size: 145
33687910 TGTATGAGAT
* *
33687920 GTATAT-ATGTGATACGGCCTAATGGCCAATGTGATGAACGTGAAAGTGTATATATATGTGATAA
1 GTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
* *
33687984 GGCCTAATGGCCAATGTGATGAACGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATG
65 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATG
*
33688049 TGATGAATGTGAAAGT
130 TGATGAATGTGAAAGA
*
33688065 GTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG-TATATATGTGATAA
1 GTATATA-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAA
33688129 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATG
65 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATG
33688194 TGATGAATGTGAAAGA
130 TGATGAATGTGAAAGA
* *
33688210 GTATAT-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAA
1 GTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
33688274 GGCCTAATGGCCAATGTGATG-ATAGTGAAA
65 GGCCTAATGGCCAATGTGATGAAT-GTGAAA
33688304 TATATGTGTG
Statistics
Matches: 225, Mismatches: 9, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
143 39 0.17
144 2 0.01
145 145 0.64
147 39 0.17
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (145 bp):
GTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
GATGAATGTGAAAGA
Found at i:33688347 original size:57 final size:53
Alignment explanation
Indices: 33688262--33688449 Score: 216
Period size: 48 Copynumber: 3.6 Consensus size: 53
33688252 AAGGTGTATA
* * *
33688262 TATATGTGATAAGGCCTAATGGCCAATGTGATGATAGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGG-CAATGTGA--AT-GTGAAATATATGTGTGATATG
*
33688319 TATATGTGGTAAAGCCGAAGGGC----T-AATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCAATGTGAATGTGAAATATATGTGTGATATG
33688367 TATATGTGGTAAAGCCGAATGGC----T-AATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCAATGTGAATGTGAAATATATGTGTGATATG
*
33688415 TATGTGTGGTAAAGCCGAATGGCTAATGTGAATGT
1 TATATGTGGTAAAGCCGAATGGC-AATGTGAATGT
33688450 TGTAACATGT
Statistics
Matches: 119, Mismatches: 6, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
48 90 0.76
49 2 0.02
51 1 0.01
52 1 0.01
53 1 0.01
54 5 0.04
56 1 0.01
57 18 0.15
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.32
Consensus pattern (53 bp):
TATATGTGGTAAAGCCGAATGGCAATGTGAATGTGAAATATATGTGTGATATG
Found at i:33688352 original size:48 final size:48
Alignment explanation
Indices: 33688298--33688446 Score: 280
Period size: 48 Copynumber: 3.1 Consensus size: 48
33688288 TGTGATGATA
*
33688298 GTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCTAAT
1 GTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAAT
33688346 GTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
33688394 GTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAAT
33688442 GTGAA
1 GTGAA
33688447 TGTTGTAACA
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 99 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (48 bp):
GTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAAT
Found at i:33688540 original size:37 final size:37
Alignment explanation
Indices: 33688486--33688576 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
33688476 AACTTGGAAA
*
33688486 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
33688524 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
33688561 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
33688577 TTTGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:33690448 original size:46 final size:46
Alignment explanation
Indices: 33690381--33690554 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
33690371 TGTAACCCGC
*
33690381 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
33690427 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
33690477 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
33690519 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
33690555 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.25
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:33690547 original size:92 final size:93
Alignment explanation
Indices: 33690389--33690558 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
33690379 GCCCATAAGT
* *
33690389 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
33690454 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
33690482 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
33690546 CGAGTTCGGATGC
66 CGAGTTCGGATGC
33690559 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 46 0.62
93 28 0.38
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:33692968 original size:29 final size:29
Alignment explanation
Indices: 33692929--33693016 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
33692919 CAAAGATAAC
*
33692929 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
33692958 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
33692987 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
33693017 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:33692987 original size:15 final size:15
Alignment explanation
Indices: 33692929--33693007 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
33692919 CAAAGATAAC
*
33692929 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
33692943 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
33692958 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
33692972 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
33692987 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
33693002 AAGAAA
1 AAGAAA
33693008 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:33693016 original size:15 final size:15
Alignment explanation
Indices: 33692940--33693016 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
33692930 AGAAAACCGA
33692940 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
33692955 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
33692969 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
33692983 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
33692999 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
33693014 ATA
1 ATA
33693017 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:33696023 original size:46 final size:46
Alignment explanation
Indices: 33695956--33696129 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
33695946 TGTAACCCGC
*
33695956 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
33696002 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
33696052 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
33696094 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
33696130 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.25
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:33696122 original size:92 final size:93
Alignment explanation
Indices: 33695964--33696133 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
33695954 GCCCATAAGT
* *
33695964 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
33696029 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
33696057 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
33696121 CGAGTTCGGATGC
66 CGAGTTCGGATGC
33696134 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 46 0.62
93 28 0.38
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:33699254 original size:18 final size:18
Alignment explanation
Indices: 33699231--33699295 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
33699221 AGGACTTGTA
*
33699231 TACTGTTACTGCACTAAT
1 TACTGTTACTGCACTGAT
* *
33699249 TACTGTTACTGTACCGAT
1 TACTGTTACTGCACTGAT
33699267 TACTGTTACTGCACTGAT
1 TACTGTTACTGCACTGAT
*
33699285 TATTGTTACTG
1 TACTGTTACTG
33699296 TAATGGGCCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (18 bp):
TACTGTTACTGCACTGAT
Found at i:33705046 original size:24 final size:24
Alignment explanation
Indices: 33705014--33705076 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
33705004 AATCTCAAAT
33705014 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
33705038 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
33705062 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
33705077 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:33713158 original size:40 final size:40
Alignment explanation
Indices: 33713113--33713277 Score: 131
Period size: 40 Copynumber: 4.2 Consensus size: 40
33713103 CGGAATATAA
33713113 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
33713153 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * * *
33713193 CCGGATGTAGCCACTAGCGCAATTGCCTTTGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
33713233 CC-GATATAATTTC-AGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
33713270 CCGGATAT
1 CCGGATAT
33713278 CATTCAATTT
Statistics
Matches: 96, Mismatches: 27, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
37 6 0.06
38 19 0.20
39 7 0.07
40 64 0.67
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:33721125 original size:40 final size:40
Alignment explanation
Indices: 33720998--33721127 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
33720988 ATGCTGGAAA
* *
33720998 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
33721038 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
33721078 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
33721118 TTATATCCGG
1 TTATATCCGG
33721128 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:33729183 original size:40 final size:40
Alignment explanation
Indices: 33729056--33729185 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
33729046 ATGCTGGAAA
* *
33729056 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
33729096 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
33729136 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
33729176 TTATATCCGG
1 TTATATCCGG
33729186 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:33733329 original size:49 final size:49
Alignment explanation
Indices: 33733024--33733473 Score: 329
Period size: 49 Copynumber: 9.4 Consensus size: 49
33733014 TGTGATAGTC
*
33733024 TAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-ACAAGCCAGTG
1 TAAGACATGTCTGGGACATGGCATCGGCCTCGATATATGA-AAGCCAGTG
* * * * * *
33733072 TAAGACATGT-TCGGGACAT-GCATCGGCATTGA-A-ACGAGAGCTAATG
1 TAAGACATGTCT-GGGACATGGCATCGGCCTCGATATATGAAAGCCAGTG
* * * * * *
33733118 TAAGACATGTCTAGAACAT-GCATCGGCCTCGAGATATGCAAGCTAGTA
1 TAAGACATGTCTGGGACATGGCATCGGCCTCGATATATGAAAGCCAGTG
* * *** * *
33733166 TAAGACATGTCTGGGACATGGCGTCAG-CT---TAT-TGTGTGTCAGTT
1 TAAGACATGTCTGGGACATGGCATCGGCCTCGATATATGAAAGCCAGTG
* * * **
33733210 TAAGACCTGTCTGGGACATGGCATCGGCACT-GATAGA-GAGAGCCAAAG
1 TAAGACATGTCTGGGACATGGCATCGGC-CTCGATATATGAAAGCCAGTG
* * *
33733258 TAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAAAGTCAGTG
1 TAAGACATGTCTGGGACATGGCATCGGCCTCGATATATGAAAGCCAGTG
* * ** * *
33733307 TAAGACCTGTCTGGGACATGGCATCGACAACGATAGATGAGAGCCAGTG
1 TAAGACATGTCTGGGACATGGCATCGGCCTCGATATATGAAAGCCAGTG
* * * *
33733356 TAAGACCTGTCTGGGACACGGCATCGGCCTCAATATATGAAAGTCAGTG
1 TAAGACATGTCTGGGACATGGCATCGGCCTCGATATATGAAAGCCAGTG
* * * * * ** *
33733405 TAAGACTTGTCTGGGACATGACATCGACTTTG--ATATGCTAGCCAATG
1 TAAGACATGTCTGGGACATGGCATCGGCCTCGATATATGAAAGCCAGTG
*
33733452 TAAGACCATGTTTGGGACATGG
1 TAAGA-CATGTCTGGGACATGG
33733474 TGTTAGAAAA
Statistics
Matches: 317, Mismatches: 71, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
44 30 0.09
45 2 0.01
46 35 0.11
47 23 0.07
48 107 0.34
49 120 0.38
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
TAAGACATGTCTGGGACATGGCATCGGCCTCGATATATGAAAGCCAGTG
Found at i:33734748 original size:21 final size:21
Alignment explanation
Indices: 33734722--33734763 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
33734712 GTCGAAATGG
*
33734722 CCACACGGGCATGTCGCCTTT
1 CCACACGGGCATGTCACCTTT
*
33734743 CCACACGGGCGTGTCACCTTT
1 CCACACGGGCATGTCACCTTT
33734764 TGATAAATCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.38, G:0.24, T:0.24
Consensus pattern (21 bp):
CCACACGGGCATGTCACCTTT
Found at i:33756287 original size:40 final size:40
Alignment explanation
Indices: 33756143--33756306 Score: 127
Period size: 40 Copynumber: 4.1 Consensus size: 40
33756133 CGGAATACAA
**
33756143 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCACCAGCAC-AATTGCCTTCGGGTCTTAGC
** * **
33756183 CTAGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
33756223 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * * *
33756263 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
33756303 CCGG
1 CCGG
33756307 GTATCATTCA
Statistics
Matches: 96, Mismatches: 25, Indels: 6
0.76 0.20 0.05
Matches are distributed among these distances:
39 2 0.02
40 94 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:33762747 original size:42 final size:42
Alignment explanation
Indices: 33762691--33762775 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
33762681 CTTCGGGTAA
*
33762691 GTAATATAGCTCTATATGTTAAGTTTTTTAAGGAGTAAGACT
1 GTAATATAGCTCTATATGTTAAGTTTTTTAAGGAATAAGACT
*
33762733 GTAATATAGGTCTATATGTTAAGTTTTTTAAGGAATAAGACT
1 GTAATATAGCTCTATATGTTAAGTTTTTTAAGGAATAAGACT
33762775 G
1 G
33762776 CTAAGAAGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (42 bp):
GTAATATAGCTCTATATGTTAAGTTTTTTAAGGAATAAGACT
Found at i:33763104 original size:18 final size:18
Alignment explanation
Indices: 33763078--33763114 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
33763068 ATATATTAAC
33763078 CCAAGTACCCAACCCAAT
1 CCAAGTACCCAACCCAAT
*
33763096 CCAATTACCCAACCCAAT
1 CCAAGTACCCAACCCAAT
33763114 C
1 C
33763115 ATAAAATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.46, G:0.03, T:0.14
Consensus pattern (18 bp):
CCAAGTACCCAACCCAAT
Found at i:33763178 original size:20 final size:19
Alignment explanation
Indices: 33763137--33763180 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
33763127 ATAATTTAAT
**
33763137 AAACAAAAATAAAAATCTA
1 AAACAAAAATAAAAATAAA
33763156 AAACTAAAAATAAAAATAAA
1 AAAC-AAAAATAAAAATAAA
33763176 AAACA
1 AAACA
33763181 TATAATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (19 bp):
AAACAAAAATAAAAATAAA
Found at i:33763222 original size:9 final size:9
Alignment explanation
Indices: 33763204--33763273 Score: 61
Period size: 9 Copynumber: 7.8 Consensus size: 9
33763194 AAATAATTTG
*
33763204 GTTAACTCA
1 GTTAATTCA
33763213 GTTAATTCA
1 GTTAATTCA
* **
33763222 GGTAATTTG
1 GTTAATTCA
* *
33763231 GGTAATTCG
1 GTTAATTCA
33763240 GTTAATTC-
1 GTTAATTCA
*
33763248 GATTAATTCG
1 G-TTAATTCA
33763258 GTTAATTCA
1 GTTAATTCA
33763267 GTTAATT
1 GTTAATT
33763274 TTATACGTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
8 1 0.02
9 50 0.96
10 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.43
Consensus pattern (9 bp):
GTTAATTCA
Found at i:33763243 original size:27 final size:27
Alignment explanation
Indices: 33763197--33763273 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
33763187 TTTATACAAA
*
33763197 TAATTTGGTTAACTCAGTTAATTC-AGG
1 TAATTTGGTTAATTCAGTTAATTCGA-G
* * *
33763224 TAATTTGGGTAATTCGGTTAATTCGAT
1 TAATTTGGTTAATTCAGTTAATTCGAG
*
33763251 TAATTCGGTTAATTCAGTTAATT
1 TAATTTGGTTAATTCAGTTAATT
33763274 TTATACGTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
27 41 0.98
28 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (27 bp):
TAATTTGGTTAATTCAGTTAATTCGAG
Found at i:33763271 original size:18 final size:18
Alignment explanation
Indices: 33763197--33763273 Score: 77
Period size: 18 Copynumber: 4.3 Consensus size: 18
33763187 TTTATACAAA
* *
33763197 TAATTTGGTTAACTCAGT
1 TAATTCGGTTAATTCAGT
** *
33763215 TAATTCAGG-TAATTTGGG
1 TAATTC-GGTTAATTCAGT
33763233 TAATTCGGTTAATTC-GAT
1 TAATTCGGTTAATTCAG-T
33763251 TAATTCGGTTAATTCAGT
1 TAATTCGGTTAATTCAGT
33763269 TAATT
1 TAATT
33763274 TTATACGTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
17 3 0.06
18 42 0.88
19 3 0.06
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (18 bp):
TAATTCGGTTAATTCAGT
Found at i:33768818 original size:43 final size:43
Alignment explanation
Indices: 33768770--33768928 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
33768760 AACTCATACA
* * * *
33768770 ATGCCAACGTCCTAGACTTGGTCTTACATGTTATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCG
* * * *
33768813 ATGCC-ACTGTCCCAGACAAGGTCATACACGAAATCATATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCAAATATCG
* *
33768855 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATC-AAATATCG
*
33768899 ATGCCAACGAT-CCAAACATGGTCTTACACG
1 ATGCCAACG-TCCCAGACATGGTCTTACACG
33768929 AAGTCACATA
Statistics
Matches: 94, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 29 0.31
43 35 0.37
44 29 0.31
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCG
Found at i:33768858 original size:42 final size:42
Alignment explanation
Indices: 33768807--33768905 Score: 128
Period size: 42 Copynumber: 2.3 Consensus size: 42
33768797 ATGTTATCAA
*
33768807 ATATCGATGCCACTGTCCCAGACAAGGTCATACACG-AAATC
1 ATATCGATGCCAATGTCCCAGACAAGGTCATACACGTAAATC
* *
33768848 ATATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTC
1 ATAT-CGATGCCAATGTCCCAGACAAGGTCATACACGTAAA--TC
*
33768893 AAATCGATGCCAA
1 ATATCGATGCCAA
33768906 CGATCCAAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
41 4 0.08
42 29 0.58
43 3 0.06
44 9 0.18
45 5 0.10
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.22
Consensus pattern (42 bp):
ATATCGATGCCAATGTCCCAGACAAGGTCATACACGTAAATC
Found at i:33771138 original size:28 final size:28
Alignment explanation
Indices: 33771102--33771160 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
33771092 TAGAGGTATA
33771102 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
33771130 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
33771158 TCG
1 TCG
33771161 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:33771810 original size:27 final size:27
Alignment explanation
Indices: 33771780--33771841 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
33771770 GGGCAAAATG
33771780 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
33771807 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
33771834 GTAATTTT
1 GTAATTTT
33771842 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:33771854 original size:27 final size:27
Alignment explanation
Indices: 33771824--33771946 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
33771814 TACCCTACAG
* *
33771824 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
33771851 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
33771878 GGGTATTTTAGTAATTTTACAAA-CAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
33771904 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
33771931 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
33771947 CTGTAAATTG
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.26
27 60 0.73
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:33771855 original size:54 final size:53
Alignment explanation
Indices: 33771797--33771946 Score: 149
Period size: 53 Copynumber: 2.8 Consensus size: 53
33771787 TACCCCACAA
** * * *
33771797 GGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAA-CAG
** *
33771851 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACAG
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACAG
** * * * *
33771904 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATT
33771947 CTGTAAATTG
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
53 44 0.52
54 40 0.48
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (53 bp):
GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACAG
Found at i:33771927 original size:53 final size:54
Alignment explanation
Indices: 33771824--33771946 Score: 194
Period size: 53 Copynumber: 2.3 Consensus size: 54
33771814 TACCCTACAG
* *
33771824 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* *
33771878 GGGTATTTTAGTAATTTTACAAA-CAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
*
33771931 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
33771947 CTGTAAATTG
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
53 42 0.66
54 22 0.34
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:33771960 original size:27 final size:27
Alignment explanation
Indices: 33771930--33772000 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
33771920 TTATAAACCA
* *
33771930 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
33771957 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
33771984 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
33772001 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:33771972 original size:80 final size:80
Alignment explanation
Indices: 33771805--33771973 Score: 178
Period size: 80 Copynumber: 2.1 Consensus size: 80
33771795 AAGGGTATTT
** * *
33771805 CAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTA
1 CAGTAATTTTA-CAAACAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTA
***
33771870 TAAACAAAGGGTATTT
65 TAAACAAAGGGTAAAA
* * * *
33771886 TAGTAATTTTACAAACAGGGGTATTTTGGTGATTTTAT-AAACCAAGGGTATTTTGGTAATTCTG
1 CAGTAATTTTACAAACAGGGGTATTTTAGTAATTTT-TCAAACCAAGGGTATTTTGGTAATTCTA
***
33771950 TAAATTGAGGGTAAAA
65 TAAACAAAGGGTAAAA
*
33771966 CGGTAATT
1 CAGTAATT
33771974 CTGTAAATCG
Statistics
Matches: 71, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
80 60 0.85
81 11 0.15
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
CAGTAATTTTACAAACAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTAT
AAACAAAGGGTAAAA
Found at i:33775259 original size:28 final size:28
Alignment explanation
Indices: 33775224--33775282 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
33775214 CTAGGGTATA
33775224 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
33775252 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
33775280 TCG
1 TCG
33775283 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:33775933 original size:27 final size:27
Alignment explanation
Indices: 33775903--33775964 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
33775893 GGGCAAAATG
33775903 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
33775930 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
33775957 GTAATTTT
1 GTAATTTT
33775965 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:33775977 original size:27 final size:27
Alignment explanation
Indices: 33775947--33776069 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
33775937 TACCCTACAG
* *
33775947 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
33775974 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
33776001 GGGTATTTTAGTAATTTTACAAA-CAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
33776027 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
33776054 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
33776070 CTGTAAATTG
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.26
27 60 0.73
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:33775978 original size:54 final size:53
Alignment explanation
Indices: 33775920--33776069 Score: 149
Period size: 53 Copynumber: 2.8 Consensus size: 53
33775910 TACCCCACAA
** * * *
33775920 GGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAA-CAG
** *
33775974 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACAG
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACAG
** * * * *
33776027 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATT
33776070 CTGTAAATTG
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
53 44 0.52
54 40 0.48
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (53 bp):
GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACAG
Found at i:33776050 original size:53 final size:54
Alignment explanation
Indices: 33775947--33776069 Score: 194
Period size: 53 Copynumber: 2.3 Consensus size: 54
33775937 TACCCTACAG
* *
33775947 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* *
33776001 GGGTATTTTAGTAATTTTACAAA-CAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
*
33776054 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
33776070 CTGTAAATTG
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
53 42 0.66
54 22 0.34
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:33776083 original size:27 final size:27
Alignment explanation
Indices: 33776053--33776123 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
33776043 TTATAAACCA
* *
33776053 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
33776080 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
33776107 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
33776124 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:33776095 original size:80 final size:80
Alignment explanation
Indices: 33775928--33776096 Score: 178
Period size: 80 Copynumber: 2.1 Consensus size: 80
33775918 AAGGGTATTT
** * *
33775928 CAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTA
1 CAGTAATTTTA-CAAACAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTA
***
33775993 TAAACAAAGGGTATTT
65 TAAACAAAGGGTAAAA
* * * *
33776009 TAGTAATTTTACAAACAGGGGTATTTTGGTGATTTTAT-AAACCAAGGGTATTTTGGTAATTCTG
1 CAGTAATTTTACAAACAGGGGTATTTTAGTAATTTT-TCAAACCAAGGGTATTTTGGTAATTCTA
***
33776073 TAAATTGAGGGTAAAA
65 TAAACAAAGGGTAAAA
*
33776089 CGGTAATT
1 CAGTAATT
33776097 CTGTAAATCG
Statistics
Matches: 71, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
80 60 0.85
81 11 0.15
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
CAGTAATTTTACAAACAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTAT
AAACAAAGGGTAAAA
Found at i:33778106 original size:78 final size:79
Alignment explanation
Indices: 33777970--33778150 Score: 233
Period size: 78 Copynumber: 2.3 Consensus size: 79
33777960 TCGAATGATA
* * *
33777970 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGT-CCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
33778035 TGTGCGAGTTACTAAT
65 TGTGCGAGTTACT-AT
* * **
33778051 TCCGGGCTAAG-CCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
33778113 TGTGCGAGTTACTAT
65 TGTGCGAGTTACTAT
* *
33778128 ACCGGGCTATGTCCGAAGGCATT
1 TCCGGGCTAAGTCCGAAGGCATT
33778151 TGAACGTAGT
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
77 12 0.13
78 52 0.58
79 14 0.16
81 11 0.12
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGCTAAGTCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAT
Found at i:33778118 original size:40 final size:39
Alignment explanation
Indices: 33777969--33778152 Score: 228
Period size: 38 Copynumber: 4.7 Consensus size: 39
33777959 TTCGAATGAT
* * * *
33777969 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAA
*
33778010 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
* *
33778050 TTCCGGGCTAAG-CCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
* *
33778088 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 ATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAA
*
33778128 A-CCGGGCTATGTCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCGAAGGCATTTG
33778153 AACGTAGTAA
Statistics
Matches: 126, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
38 48 0.38
39 9 0.07
40 42 0.33
41 26 0.21
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:33782081 original size:28 final size:28
Alignment explanation
Indices: 33782035--33782103 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
33782025 TTTAAAACCC
*
33782035 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
33782062 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
33782090 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
33782104 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:33783419 original size:20 final size:20
Alignment explanation
Indices: 33783396--33783433 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
33783386 CACATCCAAA
*
33783396 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
33783416 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
33783434 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:33789134 original size:28 final size:28
Alignment explanation
Indices: 33789088--33789156 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
33789078 TTTAAAACCC
*
33789088 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
33789115 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
33789143 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
33789157 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:33790489 original size:20 final size:20
Alignment explanation
Indices: 33790466--33790503 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
33790456 CACATCCAAA
*
33790466 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
33790486 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
33790504 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:33792017 original size:40 final size:40
Alignment explanation
Indices: 33791951--33792141 Score: 276
Period size: 40 Copynumber: 4.8 Consensus size: 40
33791941 GAGAATTGAG
* * * * *
33791951 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
33791991 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
33792031 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
33792071 AGTAATGCAACCGGACTAAG-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
33792110 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
33792142 ATCATGCTGG
Statistics
Matches: 136, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
39 34 0.25
40 102 0.75
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:33792136 original size:79 final size:80
Alignment explanation
Indices: 33791951--33792149 Score: 301
Period size: 79 Copynumber: 2.5 Consensus size: 80
33791941 GAGAATTGAG
* * * * *
33791951 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATGCAACCGGACTAAGTTCCG
33792016 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * *
33792031 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATGCAACCGGACTAAG-TCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATGCAACCGGACTAAGTTCCG
33792095 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* *
33792110 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
33792150 GGTGACGTGT
Statistics
Matches: 106, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 54 0.51
80 52 0.49
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATGCAACCGGACTAAGTTCCG
AAGAGCATTCGTGCT
Found at i:33796364 original size:47 final size:47
Alignment explanation
Indices: 33796246--33796643 Score: 634
Period size: 47 Copynumber: 8.3 Consensus size: 47
33796236 GTATGAGATA
33796246 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
33796293 TGATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 T-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
33796341 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
33796388 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
33796439 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
*
33796488 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
33796535 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
33796582 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
33796629 TATAAATGTGATAAG
1 TATATATGTGATAAG
33796644 TCCCGAAGGG
Statistics
Matches: 335, Mismatches: 11, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
47 149 0.44
48 47 0.14
49 136 0.41
51 3 0.01
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:33796443 original size:96 final size:95
Alignment explanation
Indices: 33796246--33796643 Score: 645
Period size: 98 Copynumber: 4.2 Consensus size: 95
33796236 GTATGAGATA
*
33796246 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGATATATGTGATAAGGC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAAGGC
33796311 CTAATGGCCGATGTGATGAATGTGAAAGTG
66 CTAATGGCCGATGTGATGAATGTGAAAGTG
33796341 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-TATATATGTGATAAGG
33796406 CCTAATGGCCGATGTGATGAATGTGAAAGTGTG
65 CCTAATGGCCGATGTGATGAATGTGAAA--GTG
33796439 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-TATATATGTGATAAGG
*
33796504 CCTAATGGCCGATGTGATGAATGTGAAGGTG
65 CCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
33796535 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-TATATATGTGATAGGGC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAAGGC
* * * * * *
33796599 CGAGTGGCCAACGTGATGGATGTGGAAGTG
66 CTAATGGCCGATGTGATGAATGTGAAAGTG
*
33796629 TATAAATGTGATAAG
1 TATATATGTGATAAG
33796644 TCCCGAAGGG
Statistics
Matches: 286, Mismatches: 14, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
94 53 0.19
95 48 0.17
96 91 0.32
98 94 0.33
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (95 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:33799067 original size:52 final size:50
Alignment explanation
Indices: 33799003--33799118 Score: 119
Period size: 50 Copynumber: 2.3 Consensus size: 50
33798993 ATGAACAGAT
* * * *
33799003 GAGTTACTTAATGCCAGATTTA-ATTTCATAATGCAGACTTAAACTAACATGG
1 GAGTTACATAATGCCA-AGTCACATTT-ATAATGCAGACTT-AACTAACATGA
* *
33799055 GAGTTACATAATG-CAAGTCACTATTTATGATGCATACTTAACTAACATGA
1 GAGTTACATAATGCCAAGTCAC-ATTTATAATGCAGACTTAACTAACATGA
*
33799105 AAGTTACATAATGC
1 GAGTTACATAATGC
33799119 ATTACTTTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
50 25 0.46
51 13 0.24
52 16 0.30
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.32
Consensus pattern (50 bp):
GAGTTACATAATGCCAAGTCACATTTATAATGCAGACTTAACTAACATGA
Found at i:33802121 original size:30 final size:30
Alignment explanation
Indices: 33802087--33802144 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
33802077 TTTTCGGGCA
* *
33802087 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
33802117 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
33802145 ATGTAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:33802557 original size:47 final size:46
Alignment explanation
Indices: 33802484--33802693 Score: 171
Period size: 47 Copynumber: 4.5 Consensus size: 46
33802474 TGATTTGTGT
* * *
33802484 GCCAATGTAAGACATGCCTGGGACAT-GCTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGG-CACATTATGAGA
*
33802530 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACATCTA-GACAAGG
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCACAT-TATG---AGA
* * ** *
33802578 GCTAGTGTAAGACATGTCTAGGACAT-GCATCAAC-CATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGGCACAT--TATGAGA
** *
33802624 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCACA-TTATGAGA
*
33802672 GCTAGTGTAAGACATGTCTGGG
1 GCCAGTGTAAGACATGTCTGGG
33802694 CCATACATCG
Statistics
Matches: 132, Mismatches: 18, Indels: 27
0.75 0.10 0.15
Matches are distributed among these distances:
45 5 0.04
46 30 0.23
47 53 0.40
48 41 0.31
49 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGGCATCGGCACATTATGAGA
Found at i:33802650 original size:94 final size:93
Alignment explanation
Indices: 33802489--33802847 Score: 329
Period size: 94 Copynumber: 3.8 Consensus size: 93
33802479 TGTGTGCCAA
* * * ** * *
33802489 TGTAAGACATGCCTGGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 TGTAAGACATGTCTAGGACATGCATCAACCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGA
* * *
33802554 CATGGCATCGACATCTAGACAAGGGCTAG
66 CATGGCATCGGCATC-AGAGAAGTGCTAG
*
33802583 TGTAAGACATGTCTAGGACATGCATCAACCATACTATGATAGCCAGTGTAAGACCATGTCTGGGA
1 TGTAAGACATGTCTAGGACATGCATCAACCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGA
33802648 CATGGCATCGGCA-CAGAGATGAGTGCTAG
66 CATGGCATCGGCATCAGAGA--AGTGCTAG
* * * ** **
33802677 TGTAAGACATGTCTGGGCCATACATCGGCC-TCGAC-A-GAGATAGCCAGTGTAAGA-TGTGTCT
1 TGTAAGACATGTCTAGGACATGCATCAACCAT--ACTATGAG--AGCCAGTGTAAGACCATGTCT
* * * **
33802738 GGGATA-CGCATCGGC-TAAGAGTTGTGCTAG
62 GGGACATGGCATCGGCATCAGAGAAGTGCTAG
* * * *
33802768 TGTAAGACATGTCTAGGACATGCATCAACACGCGTA-TATGAGAGCTAGTGTAAGACCATATCTA
1 TGTAAGACATGTCTAGGACATGCATC-A-AC-CATACTATGAGAGCCAGTGTAAGACCATGTCTG
33802832 GGACATGGCATCGGCA
63 GGACATGGCATCGGCA
33802848 ATATATCCCA
Statistics
Matches: 213, Mismatches: 36, Indels: 31
0.76 0.13 0.11
Matches are distributed among these distances:
91 30 0.14
92 16 0.08
93 27 0.13
94 124 0.58
95 16 0.08
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (93 bp):
TGTAAGACATGTCTAGGACATGCATCAACCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCATCAGAGAAGTGCTAG
Found at i:33802726 original size:47 final size:44
Alignment explanation
Indices: 33802484--33802793 Score: 157
Period size: 47 Copynumber: 6.7 Consensus size: 44
33802474 TGATTTGTGT
* * * * *
33802484 GCCAATGTAAGACATGCCTGGGACATG-CTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGACATCGG-CACA-GA-GATA
* * *
33802530 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCTAGACA-A
1 GCCAGTGTAAGA-CATGTCTGGGACATGACATCGGCA-C-AGAGATA
* * ** * *
33802576 GGGCTAGTGTAAGACATGTCTAGGACATG-CATCAACCATACTATGATA
1 --GCCAGTGTAAGACATGTCTGGGACATGACATC-GGCACA-GA-GATA
*
33802624 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGA
1 GCCAGTGTAAGA-CATGTCTGGGACATGACATCGGCACAGAGAT-A
* *
33802670 GTGCTAGTGTAAGACATGTCTGGGCCAT-ACATCGGCCTCGACAGAGATA
1 --GCCAGTGTAAGACATGTCTGGGACATGACATCGG---C-ACAGAGATA
** * * * *
33802719 GCCAGTGTAAGATGTGTCTGGGATACG-CATCGGCTA-AGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGACATCGGC-ACAGAGAT-A
* *
33802763 GCTAGTGTAAGACATGTCTAGGACATG-CATC
1 GCCAGTGTAAGACATGTCTGGGACATGACATC
33802794 AACACGCGTA
Statistics
Matches: 206, Mismatches: 37, Indels: 44
0.72 0.13 0.15
Matches are distributed among these distances:
43 5 0.02
44 27 0.13
45 4 0.02
46 36 0.17
47 90 0.44
48 33 0.16
49 3 0.01
50 8 0.04
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGACATCGGCACAGAGATA
Found at i:33813702 original size:43 final size:43
Alignment explanation
Indices: 33813636--33813721 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
33813626 AAATCATACA
* *
33813636 ATGCCAATGTCCTAGACGTGGTCTTACAT-GTAACCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTAC-TCGTAAACACATATCG
*
33813679 ATGCCATTGTCCCAGACAG-GGTCTTACTCGTAAACACATATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACTCGTAAACACATATCG
33813722 GAATCACAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 36 0.95
44 1 0.03
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACTCGTAAACACATATCG
Found at i:33819191 original size:69 final size:70
Alignment explanation
Indices: 33819059--33819191 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
33819049 TAGTTTATTA
* * * *
33819059 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
33819124 CTTAG
66 CTTAG
33819129 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
33819192 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:33820564 original size:47 final size:47
Alignment explanation
Indices: 33820513--33820807 Score: 455
Period size: 47 Copynumber: 6.3 Consensus size: 47
33820503 ACAAGATATG
*
33820513 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* *
33820560 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATTTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
33820607 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * *
33820654 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
33820701 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * * *
33820748 TATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
33820795 TAAATGTGATAAG
1 TATATGTGATAAG
33820808 TCCCGAAGGG
Statistics
Matches: 228, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 228 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
Found at i:33835763 original size:46 final size:46
Alignment explanation
Indices: 33835696--33835824 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
33835686 TGTAACCCGC
* * *
33835696 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
33835742 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
33835788 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
33835825 TGCCCAAATA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:33838246 original size:29 final size:29
Alignment explanation
Indices: 33838207--33838294 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
33838197 CAAAGATAAC
*
33838207 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
33838236 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
33838265 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
33838295 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:33838265 original size:15 final size:15
Alignment explanation
Indices: 33838207--33838285 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
33838197 CAAAGATAAC
*
33838207 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
33838221 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
33838236 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
33838250 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
33838265 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
33838280 AAGAAA
1 AAGAAA
33838286 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:33838294 original size:15 final size:15
Alignment explanation
Indices: 33838218--33838294 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
33838208 AGAAAACCGA
33838218 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
33838233 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
33838247 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
33838261 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
33838277 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
33838292 ATA
1 ATA
33838295 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:33841298 original size:46 final size:46
Alignment explanation
Indices: 33841231--33841359 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
33841221 TGTAACCCGC
* * *
33841231 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
33841277 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
33841323 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
33841360 TGCCCAAATA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:33844962 original size:18 final size:20
Alignment explanation
Indices: 33844921--33844963 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
33844911 TTACAAAAAG
*
33844921 AAATTCAAAAATAGTTTTTA
1 AAATTCAAAAATAGTTTATA
33844941 AAATTC-AAAATA-TTTATA
1 AAATTCAAAAATAGTTTATA
33844959 AAATT
1 AAATT
33844964 TCCAATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.45
19 6 0.27
20 6 0.27
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (20 bp):
AAATTCAAAAATAGTTTATA
Found at i:33847370 original size:30 final size:30
Alignment explanation
Indices: 33847329--33847385 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
33847319 ATTTCTAGCA
* *
33847329 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
33847359 TAGGGGCAAAATGGTCATTTTACCAAA
1 TAGGGGCAAAATGGTCATTTTACCAAA
33847386 TATGTGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:33847828 original size:48 final size:47
Alignment explanation
Indices: 33847727--33847974 Score: 204
Period size: 47 Copynumber: 5.3 Consensus size: 47
33847717 TTACTTGTGT
* * * *
33847727 GCCAGTGTAAGACATGTCTGAGACATGCATCGGCCACAAT-ATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGATA
*
33847773 GCCAGTGTAAGACCATGTCTGGGACATGTATCAGCCTCGATGATGATA
1 GCCAGTGTAAGA-CATGTCTGGGACATGCATCAGCCTCGATGATGATA
* * * * * *
33847821 GCCAGTGTAAGACGTGTTTGGGACACGCATC-GGCTAAGA-GTTG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGATGATGATA
* * * **
33847865 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCACAT--ATAGAAGAGG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGC-C-TCGAT-GATGATA
* * * *
33847913 GCTAGTATAAGACCCTGTCTAGGACATGGCATCAGCCTCGATGATGATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGATGATGATA
33847962 GCCAGTGTAAGAC
1 GCCAGTGTAAGAC
33847975 CAAGTCCGAA
Statistics
Matches: 160, Mismatches: 28, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
44 29 0.18
45 2 0.01
46 21 0.13
47 41 0.26
48 31 0.19
49 26 0.16
50 10 0.06
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGATA
Found at i:33848848 original size:55 final size:55
Alignment explanation
Indices: 33848759--33848948 Score: 281
Period size: 55 Copynumber: 3.5 Consensus size: 55
33848749 GTACTTAAAA
* * * *
33848759 TTTAAAGTTAGTGTTGAACACGGGCAAGCCACACGGGCGTGTGTCAAGGCCATGT
1 TTTAAAGTCAGTGTCGTACACGGGCAGGCCACACGGGCGTGTGTCAAGGCCATGT
*
33848814 TTTAAAGTCAGTGTCGTACACGGGCAGGCTACACGGGCGTGTGTCAAGGCCATGT
1 TTTAAAGTCAGTGTCGTACACGGGCAGGCCACACGGGCGTGTGTCAAGGCCATGT
* * * *
33848869 TTTAAAGTCAGTGTCATACACGGGTAGGCCACACGGGCATGTGTCATGGCCATGT
1 TTTAAAGTCAGTGTCGTACACGGGCAGGCCACACGGGCGTGTGTCAAGGCCATGT
* *
33848924 TTTAAAGTCAGTGTTGCACACGGGC
1 TTTAAAGTCAGTGTCGTACACGGGC
33848949 TAAGGACACA
Statistics
Matches: 121, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 121 1.00
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.25
Consensus pattern (55 bp):
TTTAAAGTCAGTGTCGTACACGGGCAGGCCACACGGGCGTGTGTCAAGGCCATGT
Found at i:33851651 original size:17 final size:17
Alignment explanation
Indices: 33851629--33851663 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
33851619 TAGTAATTTC
*
33851629 AAATTTAACATATAACA
1 AAATTTAACATAGAACA
33851646 AAATTTAACATAGAACA
1 AAATTTAACATAGAACA
33851663 A
1 A
33851664 TTGTGATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.60, C:0.11, G:0.03, T:0.26
Consensus pattern (17 bp):
AAATTTAACATAGAACA
Found at i:33851802 original size:13 final size:13
Alignment explanation
Indices: 33851781--33851816 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
33851771 AAATGGTCAA
33851781 AGGCCGTGTGGCT
1 AGGCCGTGTGGCT
*
33851794 AGGCTGTGTGGCT
1 AGGCCGTGTGGCT
33851807 AGGCCGTGTG
1 AGGCCGTGTG
33851817 AGAAGGCTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.08, C:0.19, G:0.47, T:0.25
Consensus pattern (13 bp):
AGGCCGTGTGGCT
Found at i:33852876 original size:21 final size:21
Alignment explanation
Indices: 33852850--33852890 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
33852840 CCCGTGTGAC
* *
33852850 TCACACAGCCGTGTCTCTAGA
1 TCACACAGCCATGTCGCTAGA
*
33852871 TCACACGGCCATGTCGCTAG
1 TCACACAGCCATGTCGCTAG
33852891 GTCATCGTGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.34, G:0.22, T:0.22
Consensus pattern (21 bp):
TCACACAGCCATGTCGCTAGA
Found at i:33854006 original size:44 final size:44
Alignment explanation
Indices: 33853951--33854042 Score: 139
Period size: 44 Copynumber: 2.1 Consensus size: 44
33853941 CCGAAGTAAC
* *
33853951 AGTAGCAGTACGACACACATGGTGCCTCATCGACTCAAAGTCAA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGTCAA
** *
33853995 AGTAACAGTACGACACTTATAGTGCCTCATCGACTCAAGGTCAA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGTCAA
33854039 AGTA
1 AGTA
33854043 TCCCTGAACA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.21
Consensus pattern (44 bp):
AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGTCAA
Found at i:33855165 original size:6 final size:6
Alignment explanation
Indices: 33855156--33855186 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
33855146 CTAATTTCCC
*
33855156 TTTCTT TTTCTT TTTCTT TCTCTT TTTCTT T
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT T
33855187 CCCCCTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTCTT
Found at i:33870645 original size:71 final size:69
Alignment explanation
Indices: 33870451--33870655 Score: 221
Period size: 69 Copynumber: 2.9 Consensus size: 69
33870441 ATATCGCCTG
* * * ** *
33870451 TAAAATTAAGGTTCGCAAGCGAAGAGCCACGACCTCCAACATAGTTAGCGAGAGCAAAGCTCCTA
1 TAAAATTAAAGTTCGTAGGCGAAGAGCCGTGACCTCCAACATAGTTAGCGAGAGCAAAGCTCCCA
*
33870516 GCGG
66 GCGA
* * * * * * * *
33870520 TAAAATTCAGGTTCGTAGGTGAATAGCTGTGACCTCTAATACAGTTAGCGAGAGCAAAGCTCCCA
1 TAAAATTAAAGTTCGTAGGCGAAGAGCCGTGACCTCCAACATAGTTAGCGAGAGCAAAGCTCCCA
*
33870585 GCTA
66 GCGA
* * *
33870589 TAAAAAATTAAATTTCTTAGGCGAAGAGCCGTGACATCCAACATAGTTAGCGAGAGCAAAGCTCC
1 T--AAAATTAAAGTTCGTAGGCGAAGAGCCGTGACCTCCAACATAGTTAGCGAGAGCAAAGCTCC
33870654 CA
64 CA
33870656 AATGTAAAAC
Statistics
Matches: 109, Mismatches: 25, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
69 56 0.51
71 53 0.49
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (69 bp):
TAAAATTAAAGTTCGTAGGCGAAGAGCCGTGACCTCCAACATAGTTAGCGAGAGCAAAGCTCCCA
GCGA
Found at i:33870664 original size:71 final size:71
Alignment explanation
Indices: 33870452--33870664 Score: 223
Period size: 71 Copynumber: 3.0 Consensus size: 71
33870442 TATCGCCTGT
* * * ** *
33870452 AAAATTAAGGTTCGCAAGCGAAGAGCCACGACCTCCAACATAGTTAGCGAGAGCAAAGCTCCTAG
1 AAAATTAAAGTTCGTAGGCGAAGAGCCGTGACCTCCAACATAGTTAGCGAGAGCAAAGCTCCCAG
*
33870517 CGGT--
66 CTGTAA
* * * * * * * *
33870521 AAAATTCAGGTTCGTAGGTGAATAGCTGTGACCTCTAATACAGTTAGCGAGAGCAAAGCTCCCAG
1 AAAATTAAAGTTCGTAGGCGAAGAGCCGTGACCTCCAACATAGTTAGCGAGAGCAAAGCTCCCAG
*
33870586 CTATAA
66 CTGTAA
* * * *
33870592 AAAATTAAATTTCTTAGGCGAAGAGCCGTGACATCCAACATAGTTAGCGAGAGCAAAGCTCCCAA
1 AAAATTAAAGTTCGTAGGCGAAGAGCCGTGACCTCCAACATAGTTAGCGAGAGCAAAGCTCCCAG
*
33870657 ATGTAA
66 CTGTAA
33870663 AA
1 AA
33870665 CTAAGGTTCG
Statistics
Matches: 114, Mismatches: 28, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
69 55 0.48
71 59 0.52
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (71 bp):
AAAATTAAAGTTCGTAGGCGAAGAGCCGTGACCTCCAACATAGTTAGCGAGAGCAAAGCTCCCAG
CTGTAA
Found at i:33871361 original size:6 final size:6
Alignment explanation
Indices: 33871350--33871433 Score: 75
Period size: 6 Copynumber: 13.8 Consensus size: 6
33871340 AACCAAAATG
* *
33871350 AGAATC AGAATC AGAATC AGAATC A-ATATT AGTAA-C AAAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC AGAATC
* *
33871398 AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
33871434 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
5 4 0.06
6 54 0.86
7 3 0.05
8 2 0.03
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:33871392 original size:30 final size:31
Alignment explanation
Indices: 33871358--33871433 Score: 111
Period size: 30 Copynumber: 2.5 Consensus size: 31
33871348 TGAGAATCAG
33871358 AATCAGAATCAGAATCA-ATATTA-GTAACAA
1 AATCAGAATCAGAATCAGA-ATTACGTAACAA
* *
33871388 AATCAGAATCAGAATCAGAATTACGTGACAG
1 AATCAGAATCAGAATCAGAATTACGTAACAA
33871419 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
33871434 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
30 21 0.50
31 21 0.50
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.21
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATTACGTAACAA
Found at i:33871599 original size:27 final size:26
Alignment explanation
Indices: 33871551--33871609 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
33871541 AGCATGGCTG
* *
33871551 CCAGAACAGATATCGTGATAGAGTCA
1 CCAGAACAAATATCGTGATAGAGCCA
* *
33871577 CCAGATACAAATATTGTGGTAGAGCCA
1 CCAGA-ACAAATATCGTGATAGAGCCA
33871604 CCAGAA
1 CCAGAA
33871610 TCAGATAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (26 bp):
CCAGAACAAATATCGTGATAGAGCCA
Found at i:33871621 original size:27 final size:27
Alignment explanation
Indices: 33871551--33871622 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 27
33871541 AGCATGGCTG
* *
33871551 CCAGAA-CAGAT-ATCGTGATAGAGTCA
1 CCAGAATCAGATAAT-GTGGTAGAGCCA
* *
33871577 CCAG-ATACAAATATTGTGGTAGAGCCA
1 CCAGAAT-CAGATAATGTGGTAGAGCCA
33871604 CCAGAATCAGATAATGTGG
1 CCAGAATCAGATAATGTGG
33871623 CAAACCCACC
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.11
27 28 0.78
28 3 0.08
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGTAGAGCCA
Found at i:33871837 original size:22 final size:22
Alignment explanation
Indices: 33871789--33871847 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
33871779 GTAAATACGT
*
33871789 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
33871811 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
33871833 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
33871848 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Done.