Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 111 of 292
Found at i:33871974 original size:27 final size:28
Alignment explanation
Indices: 33871936--33872016 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 28
33871926 CGATCGGTCA
*
33871936 ACAGATATTGTGACAGAGTCACCA-AAT
1 ACAGATATTGTGACAGAGCCACCAGAAT
*
33871963 ACAGATATTGTGGCAGAGCCACCAGAAT
1 ACAGATATTGTGACAGAGCCACCAGAAT
* *
33871991 --AGATATTTGTGGCATAGCCACCAGAA
1 ACAGATA-TTGTGACAGAGCCACCAGAA
33872017 CGCTTCCTCC
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
26 5 0.10
27 41 0.84
28 3 0.06
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (28 bp):
ACAGATATTGTGACAGAGCCACCAGAAT
Found at i:33872246 original size:27 final size:27
Alignment explanation
Indices: 33872216--33872411 Score: 223
Period size: 27 Copynumber: 7.3 Consensus size: 27
33872206 GAGGCAAAAT
* * *
33872216 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
33872243 GGTAATTCTACCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
*
33872270 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
33872297 GATAATTCAACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
33872324 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
33872351 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
33872378 GGAAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
33872405 AGTAATT
1 GGTAATT
33872412 TCACAATCAA
Statistics
Matches: 143, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 3 0.02
27 137 0.96
28 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:33872282 original size:54 final size:54
Alignment explanation
Indices: 33872216--33872411 Score: 248
Period size: 54 Copynumber: 3.6 Consensus size: 54
33872206 GAGGCAAAAT
* * * *
33872216 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
33872270 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCAACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
33872324 GGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
33872378 GGAAATTCTACCTTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATT
33872412 TCACAATCAA
Statistics
Matches: 121, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 121 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:33872760 original size:27 final size:27
Alignment explanation
Indices: 33872416--33872745 Score: 418
Period size: 27 Copynumber: 12.3 Consensus size: 27
33872406 GTAATTTCAC
* *
33872416 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
33872443 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
33872470 AA-CTGAGGGT-AAACTAGTAATTCTGT-
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * **
33872496 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
33872523 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
33872550 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
33872577 AA-CTGAGGGTAAAACGATAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
33872604 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
33872631 AA-CTGAGGGTAAAACGGTAATTTTAAA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
33872658 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
33872685 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
33872712 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
33872739 AATCGAG
1 AATCGAG
33872746 AGTACTTTGG
Statistics
Matches: 258, Mismatches: 36, Indels: 18
0.83 0.12 0.06
Matches are distributed among these distances:
26 20 0.08
27 236 0.91
28 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:33872787 original size:54 final size:54
Alignment explanation
Indices: 33872522--33872776 Score: 280
Period size: 54 Copynumber: 4.7 Consensus size: 54
33872512 GTAATTTTAC
* * * *
33872522 AAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 AAATCGAGAGTAAAACGGTAATTTTATAAATCGAGGGCAAAACAGTAATTCTGT
* * * *
33872576 AAA-CTGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTGT
1 AAATC-GAGAGTAAAACGGTAATTTTATAAATCGAGGGCAAAACAGTAATTCTGT
* * * * *
33872630 AAA-CTGAGGGTAAAACGGTAATTTTAAAAATCAAGGGTAAAACGGTAATTCTGT
1 AAATC-GAGAGTAAAACGGTAATTTTATAAATCGAGGGCAAAACAGTAATTCTGT
* * * *
33872684 AAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGT
1 AAATCGAGAGTAAAACGGTAATTTTATAAATCGAGGGCAAAACAGTAATTCTGT
**** *
33872738 AAATCGAGAGTACTTTGGTAATTTTATAAGTCGAGGGCA
1 AAATCGAGAGTAAAACGGTAATTTTATAAATCGAGGGCA
33872777 TTTCAGTAAT
Statistics
Matches: 181, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 179 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (54 bp):
AAATCGAGAGTAAAACGGTAATTTTATAAATCGAGGGCAAAACAGTAATTCTGT
Found at i:33874768 original size:6 final size:6
Alignment explanation
Indices: 33874757--33874869 Score: 94
Period size: 6 Copynumber: 18.8 Consensus size: 6
33874747 AACCAAAATG
*
33874757 AGAATC AGAATC AGAATC AGAATC A-ATATT AGTAA-C AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC AGAATC
* * *
33874805 AGAATC A-ATATT AGTAA-C AGAATC AGAATC A-AATC AGAATT ACGTGA-C
1 AGAATC AGA-ATC AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
33874853 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
33874870 GTGAATGCAA
Statistics
Matches: 87, Mismatches: 8, Indels: 24
0.73 0.07 0.20
Matches are distributed among these distances:
5 12 0.14
6 68 0.78
7 4 0.05
8 3 0.03
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:33874796 original size:30 final size:30
Alignment explanation
Indices: 33874762--33874869 Score: 175
Period size: 30 Copynumber: 3.6 Consensus size: 30
33874752 AAATGAGAAT
33874762 CAGAATCAGAATCAGAATCAATATTAGTAA
1 CAGAATCAGAATCAGAATCAATATTAGTAA
33874792 CAGAATCAGAATCAGAATCAATATTAGTAA
1 CAGAATCAGAATCAGAATCAATATTAGTAA
*
33874822 CAGAATCAGAATCA-AATCAGA-ATTACGTGA
1 CAGAATCAGAATCAGAATCA-ATATTA-GTAA
33874852 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
33874870 GTGAATGCAA
Statistics
Matches: 74, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
29 9 0.12
30 62 0.84
31 3 0.04
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.21
Consensus pattern (30 bp):
CAGAATCAGAATCAGAATCAATATTAGTAA
Found at i:33875056 original size:27 final size:27
Alignment explanation
Indices: 33874986--33875059 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
33874976 AGCATGGCTG
* *
33874986 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
* *
33875012 CCAGATAT-ATATATTGTGGCAGAGCCA
1 CCAGA-ATCAGATAATGTGGCAGAGCCA
33875039 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
33875060 AACCCACCTA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
26 7 0.18
27 30 0.79
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:33875272 original size:22 final size:22
Alignment explanation
Indices: 33875224--33875282 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
33875214 GTAAATACGT
*
33875224 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
33875246 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
33875268 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
33875283 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:33875448 original size:27 final size:26
Alignment explanation
Indices: 33875369--33875451 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
33875359 TCGATCGGTC
* * *
33875369 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
33875395 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
33875422 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
33875449 AAC
1 AAC
33875452 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:33875680 original size:27 final size:27
Alignment explanation
Indices: 33875650--33875843 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
33875640 GGGGCAAAAT
* * *
33875650 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
33875677 GGTAATTCTACCCTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
33875703 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
33875730 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
33875757 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
33875784 AGTAATTCTACCCTATAGGGGTATTT-
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
33875810 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
33875837 AGTAATT
1 GGTAATT
33875844 TCACAATCAA
Statistics
Matches: 146, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
26 48 0.33
27 98 0.67
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:33875721 original size:53 final size:53
Alignment explanation
Indices: 33875649--33875843 Score: 250
Period size: 53 Copynumber: 3.7 Consensus size: 53
33875639 AGGGGCAAAA
* * * *
33875649 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACA-GGGTATT
1 TGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
*
33875701 TCGGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTT
1 T-GGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTA-TT
* * *
33875756 TGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATT
1 TGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* * *
33875809 TAGAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 TGGTAATTCTACCCTACAAGGGTATTTCAGTAATT
33875844 TCACAATCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
52 2 0.02
53 70 0.56
54 49 0.39
55 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (53 bp):
TGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
Found at i:33875819 original size:80 final size:80
Alignment explanation
Indices: 33875652--33875843 Score: 251
Period size: 80 Copynumber: 2.4 Consensus size: 80
33875642 GGCAAAATGG
* * * * * * *
33875652 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGTATTTCGGTATTTCTACCCT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAAAGGGTATTTCAGTAATTCTACCCT
*
33875717 ACAAGGGTATTTCGA
66 ACAAGGGTATTTAGA
* *
33875732 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTA-AAGGGTATTTCAGTAATTCTACCC
* *
33875797 TATAGGGGTATTTAGA
65 TACAAGGGTATTTAGA
*
33875813 -AATTCTACCCTACAGGGGTATTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT
33875844 TCACAATCAA
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 63 0.65
81 34 0.35
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (80 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAAAGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTAGA
Found at i:33876166 original size:27 final size:27
Alignment explanation
Indices: 33875848--33876149 Score: 380
Period size: 27 Copynumber: 11.2 Consensus size: 27
33875838 GTAATTTCAC
* *
33875848 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
33875875 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
33875902 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * * * **
33875929 AATCAAAGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
33875956 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
33875983 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
33876010 AA-CTGAGGGTAAAACGGTAATT-T-TAA
1 AATC-GAGGGTAAAACGGTAATTCTGT-A
*
33876036 ATATCGAGGGTAAAACGGTAGTTCTGTA
1 A-ATCGAGGGTAAAACGGTAATTCTGTA
*
33876064 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
33876091 AATCGAGGGCAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
33876118 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
33876145 AATCG
1 AATCG
33876150 GGAGTACTTT
Statistics
Matches: 237, Mismatches: 28, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.00
26 9 0.04
27 218 0.92
28 8 0.03
29 1 0.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:33878655 original size:53 final size:53
Alignment explanation
Indices: 33878474--33878680 Score: 207
Period size: 53 Copynumber: 3.8 Consensus size: 53
33878464 ATTAGTGTTT
* * * * * * *
33878474 AAGGATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGC
1 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * ** * ** * *
33878528 AAGGAAATCATATAAGACCATGTCAAGACATGGCATTCATAAACTACGATAAGGC
1 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
33878583 AAAGATCCCACGTAAGACCATGTCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
33878636 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
33878681 TAAAAACAAA
Statistics
Matches: 121, Mismatches: 30, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 48 0.40
54 35 0.29
55 38 0.31
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (53 bp):
AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:33884577 original size:10 final size:10
Alignment explanation
Indices: 33884564--33884588 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
33884554 GATGACGGTT
33884564 CCTGACAATC
1 CCTGACAATC
33884574 CCTGACAATC
1 CCTGACAATC
33884584 CCTGA
1 CCTGA
33884589 GTCCGAGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.40, G:0.12, T:0.20
Consensus pattern (10 bp):
CCTGACAATC
Found at i:33887679 original size:47 final size:47
Alignment explanation
Indices: 33887604--33887731 Score: 152
Period size: 47 Copynumber: 2.7 Consensus size: 47
33887594 CACAATTGAT
* * *
33887604 AAGTACCTATACCATGG-CTCGTAACCAAATCAAGATAACTTATC-CC
1 AAGTACCTATACCATGGCCT-GTAGCCAAATCAAGATAACTCATCTAC
* *
33887650 ATAGTACCTATACCATGGCCTGTAGCCAAATCAAGGTAACTCCTCTAC
1 A-AGTACCTATACCATGGCCTGTAGCCAAATCAAGATAACTCATCTAC
* * *
33887698 AAATACCTATACCATGGCCTGTAGCTACATCAAG
1 AAGTACCTATACCATGGCCTGTAGCCAAATCAAG
33887732 GTATTATTCA
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
46 1 0.01
47 66 0.93
48 4 0.06
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCTGTAGCCAAATCAAGATAACTCATCTAC
Found at i:33889390 original size:5 final size:5
Alignment explanation
Indices: 33889380--33889453 Score: 105
Period size: 5 Copynumber: 14.6 Consensus size: 5
33889370 AATATTAAAC
* *
33889380 TATAT TATAT TTTGAAT TATAT TA-AT TATAT TATGT TATAT TATAT TATAT
1 TATAT TATAT TAT--AT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
33889431 TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TAT
33889454 TATGAAATAA
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
4 4 0.06
5 54 0.87
7 4 0.06
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:33889828 original size:2 final size:2
Alignment explanation
Indices: 33889821--33889849 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
33889811 TTATTAACTA
33889821 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
33889850 AGATATAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33889868 original size:4 final size:4
Alignment explanation
Indices: 33889856--33889948 Score: 52
Period size: 4 Copynumber: 22.8 Consensus size: 4
33889846 TATAAGATAT
*
33889856 AAAG AAAAG AAAG AAA- AAA- AAAG AAGG AAAG AACAG AATAG AAACG
1 AAAG -AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA-AG AA-AG AAA-G
** *
33889902 AAA- AACAGG GGAG AAAG AAAG AAAGG AAA- AAA- AAAG GAAG AAAG AAA
1 AAAG AA-A-G AAAG AAAG AAAG AAA-G AAAG AAAG AAAG AAAG AAAG AAA
33889949 AGGGAGAAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
3 14 0.20
4 36 0.51
5 21 0.30
ACGTcount: A:0.71, C:0.03, G:0.25, T:0.01
Consensus pattern (4 bp):
AAAG
Found at i:33889949 original size:13 final size:13
Alignment explanation
Indices: 33889916--33889957 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
33889906 ACAGGGGAGA
33889916 AAGAAAG-AAAGG
1 AAGAAAGAAAAGG
33889928 AA-AAA-AAAAGG
1 AAGAAAGAAAAGG
33889939 AAGAAAGAAAAGG
1 AAGAAAGAAAAGG
*
33889952 GAGAAA
1 AAGAAA
33889958 TAGGGATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 10 0.38
12 5 0.19
13 11 0.42
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (13 bp):
AAGAAAGAAAAGG
Found at i:33890358 original size:12 final size:11
Alignment explanation
Indices: 33890338--33890389 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
33890328 GTTAAGATTA
*
33890338 AAATTGAAATT
1 AAATAGAAATT
33890349 AAAGTAGAAATT
1 AAA-TAGAAATT
*
33890361 GAATAGAAATT
1 AAATAGAAATT
*
33890372 GAATAAGAAATTT
1 AAAT-AGAAA-TT
33890385 AAATA
1 AAATA
33890390 TTAAATTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 15 0.43
12 15 0.43
13 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (11 bp):
AAATAGAAATT
Found at i:33890369 original size:11 final size:11
Alignment explanation
Indices: 33890343--33890383 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
33890333 GATTAAAATT
*
33890343 GAAATTAAAGTA
1 GAAATTGAA-TA
33890355 GAAATTGAATA
1 GAAATTGAATA
33890366 GAAATTGAATAA
1 GAAATTGAAT-A
33890378 GAAATT
1 GAAATT
33890384 TAAATATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 12 0.44
12 15 0.56
ACGTcount: A:0.56, C:0.00, G:0.17, T:0.27
Consensus pattern (11 bp):
GAAATTGAATA
Found at i:33892456 original size:40 final size:40
Alignment explanation
Indices: 33892411--33892595 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
33892401 TACACATTCA
* *
33892411 AATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACG
* * *
33892451 AATGCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCTCG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
* *
33892491 AAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACG
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACG
* * * * *
33892531 TATGCCGTC-GGATCTTAGTCCGGATTTAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACG
*
33892571 AAAGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAT
33892596 ATCATTCGAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.02
40 109 0.89
41 10 0.08
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
Found at i:33894356 original size:44 final size:43
Alignment explanation
Indices: 33894289--33894378 Score: 101
Period size: 44 Copynumber: 2.0 Consensus size: 43
33894279 ATCAGGGATG
* *
33894289 CTTCGACCTTGAGTCGATGAGGCA-TTATAAGTGTCGTACTGTTA
1 CTTCGACCTTAAGTCGATAAGGCACTTAT--GTGTCGTACTGTTA
* * *
33894333 CTTCGACTTTAAGTTGATAAGGCACCTTATGTGTTGTACTGTTA
1 CTTCGACCTTAAGTCGATAAGGCA-CTTATGTGTCGTACTGTTA
33894377 CT
1 CT
33894379 GTTAATTCGG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
44 35 0.90
46 4 0.10
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (43 bp):
CTTCGACCTTAAGTCGATAAGGCACTTATGTGTCGTACTGTTA
Found at i:33896505 original size:16 final size:17
Alignment explanation
Indices: 33896480--33896515 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
33896470 CTGTATGGTT
*
33896480 CACTCGTGTG-GGCCCA
1 CACTCCTGTGTGGCCCA
33896496 CACTCCTGTGTGGCCCA
1 CACTCCTGTGTGGCCCA
33896513 CAC
1 CAC
33896516 AGCCCATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.14, C:0.42, G:0.25, T:0.19
Consensus pattern (17 bp):
CACTCCTGTGTGGCCCA
Found at i:33901660 original size:5 final size:5
Alignment explanation
Indices: 33901650--33901703 Score: 65
Period size: 5 Copynumber: 10.6 Consensus size: 5
33901640 AATATTAAAC
* *
33901650 TATAT TATATTT TAAAT TATAT TA-AT TATAT TATGT TATAT TATAT TATAT
1 TATAT TATA--T TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
33901701 TAT
1 TAT
33901704 TATGAAATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
4 4 0.10
5 34 0.81
7 4 0.10
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:33901674 original size:10 final size:10
Alignment explanation
Indices: 33901641--33901702 Score: 51
Period size: 10 Copynumber: 6.6 Consensus size: 10
33901631 ATGTTCATTA
*
33901641 ATATTAAACT
1 ATATTAAATT
33901651 ATATT--A-T
1 ATATTAAATT
*
33901658 ATTTTAAATT
1 ATATTAAATT
33901668 ATATT-AATT
1 ATATTAAATT
**
33901677 ATATTATGTT
1 ATATTAAATT
*
33901687 ATATTATATT
1 ATATTAAATT
33901697 ATATTA
1 ATATTA
33901703 TTATGAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
7 5 0.12
8 1 0.02
9 10 0.23
10 27 0.63
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (10 bp):
ATATTAAATT
Found at i:33902080 original size:2 final size:2
Alignment explanation
Indices: 33902073--33902113 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
33902063 TTATTAACTA
33902073 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
33902114 AAGAAAAGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:33903333 original size:37 final size:35
Alignment explanation
Indices: 33903279--33903395 Score: 126
Period size: 31 Copynumber: 3.5 Consensus size: 35
33903269 TCAGTCATGC
*
33903279 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
33903318 ACT-GGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
33903348 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
33903379 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
33903396 ACTGTAAACG
Statistics
Matches: 76, Mismatches: 1, Indels: 10
0.87 0.01 0.11
Matches are distributed among these distances:
30 4 0.05
31 44 0.58
32 2 0.03
33 1 0.01
35 1 0.01
37 14 0.18
38 7 0.09
39 3 0.04
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:33903359 original size:31 final size:31
Alignment explanation
Indices: 33903302--33903395 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
33903292 CCTTTTCATA
*
33903302 TTTCATATTTCATAATACT-GGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
33903332 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
33903363 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
33903394 TT
1 TT
33903396 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 18 0.29
31 44 0.71
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:33903638 original size:24 final size:24
Alignment explanation
Indices: 33903587--33903729 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
33903577 GCTTTATCAT
*
33903587 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
33903612 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
33903636 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
33903659 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
33903683 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
33903707 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
33903730 CACTTCCTCC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:33903666 original size:47 final size:48
Alignment explanation
Indices: 33903587--33903728 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
33903577 GCTTTATCAT
* *
33903587 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
33903636 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
33903683 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
33903729 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:33903687 original size:71 final size:72
Alignment explanation
Indices: 33903586--33903729 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
33903576 TGCTTTATCA
*
33903586 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
33903651 GCCCTTT
66 GCCCTTT
* * **
33903658 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
33903721 AGCCCTTT
65 AGCCCTTT
33903729 T
1 T
33903730 CACTTCCTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:33903804 original size:20 final size:20
Alignment explanation
Indices: 33903779--33903838 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
33903769 TATGATTACC
33903779 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
33903799 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
33903819 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
33903839 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:33903913 original size:25 final size:25
Alignment explanation
Indices: 33903881--33903928 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
33903871 ATACATAAAC
* * *
33903881 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
33903906 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
33903929 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:33905149 original size:27 final size:27
Alignment explanation
Indices: 33905087--33905151 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
33905077 GGGCATATTC
33905087 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* * *
33905114 GTCACTTTACCCTACAGGGGCT-TTATG
1 GTCATTTTACCATACAGGGG-TATTACG
*
33905141 GTCTTTTTACC
1 GTCATTTTACC
33905152 TTTTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:33905235 original size:27 final size:26
Alignment explanation
Indices: 33905205--33905260 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
33905195 GTAAATCAAC
*
33905205 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
33905232 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
33905258 AAA
1 AAA
33905261 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:33905301 original size:27 final size:27
Alignment explanation
Indices: 33905267--33905353 Score: 88
Period size: 27 Copynumber: 3.2 Consensus size: 27
33905257 TAAAAAGTCA
* *
33905267 AGGGTATTTCTGTAACTTTGTAAATT-
1 AGGGTATTTCTGTAATTTTATAAATTG
*
33905293 AGGGGTATTT-TGGTAATTTTACAAATTG
1 A-GGGTATTTCT-GTAATTTTATAAATTG
* * *
33905321 AGGGTATTTCGGTAATTTTTTAAATCG
1 AGGGTATTTCTGTAATTTTATAAATTG
33905348 AGGGTA
1 AGGGTA
33905354 AAACAGTAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.04
27 47 0.94
28 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.43
Consensus pattern (27 bp):
AGGGTATTTCTGTAATTTTATAAATTG
Found at i:33905362 original size:27 final size:27
Alignment explanation
Indices: 33905330--33905731 Score: 488
Period size: 27 Copynumber: 14.9 Consensus size: 27
33905320 GAGGGTATTT
* *
33905330 CGGTAATTTTTTAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
33905357 CAGTAATTCTGTAAATCAAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
33905384 CAGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
33905411 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
33905438 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* * *
33905465 CGATAATTATGTAAAT-TAGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
* * *
33905492 CGGTAATTATGTAAATTGTGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
33905519 CGGTAATTCTATAAGTCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* * *
33905546 TGATAATTATGTAAATC-AGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
* *
33905573 CGGTAATTATGTAAAT-TAGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
*
33905600 CGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
**
33905627 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 CGGTAATTCTGTAAATC-GAGGGTAAAA
*
33905654 CGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* **
33905681 CGGTAATTTTACAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
33905708 CGGTAATTCTATAAATCGAGGGTA
1 CGGTAATTCTGTAAATCGAGGGTA
33905732 CTTTGGTAAT
Statistics
Matches: 327, Mismatches: 41, Indels: 14
0.86 0.11 0.04
Matches are distributed among these distances:
26 3 0.01
27 322 0.98
28 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
CGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:33905753 original size:27 final size:27
Alignment explanation
Indices: 33905655--33905957 Score: 249
Period size: 27 Copynumber: 11.3 Consensus size: 27
33905645 AGGGTAAAAC
* * ****
33905655 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
****
33905682 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
33905709 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
33905736 GGTAATTTTACAAGTCGA-GGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
33905762 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
33905789 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
33905816 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
33905843 GATAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
33905870 GGTAATTTTACAAA-CTAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
33905896 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
33905923 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
33905949 GGTAATTTT
1 GGTAATTTT
33905958 GTAAACCAAA
Statistics
Matches: 240, Mismatches: 32, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
26 62 0.26
27 178 0.74
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:33905826 original size:54 final size:52
Alignment explanation
Indices: 33905779--33905957 Score: 216
Period size: 53 Copynumber: 3.3 Consensus size: 52
33905769 TTACAGGTCG
* *
33905779 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACT
1 AGGGTATTT-AGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
*
33905832 AGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTAG-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
* * * * *
33905886 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAGC-
1 AGGGTA-TTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-CT
*
33905939 AGGGTATTTTGGTAATTTT
1 AGGGTA-TTTAGTAATTTT
33905958 GTAAACCAAA
Statistics
Matches: 114, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
53 61 0.54
54 53 0.46
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (52 bp):
AGGGTATTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
Found at i:33905918 original size:53 final size:53
Alignment explanation
Indices: 33905807--33905974 Score: 241
Period size: 53 Copynumber: 3.2 Consensus size: 53
33905797 CACAAATTAG
* * * *
33905807 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTA-GGGTATTTTGGTAATTTTATAAACCAA
33905861 GGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTATAAACCAA
* *
33905914 GGGTATTTTAGTAATTTTACAAAGC-AGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CTAGGGTATTTTGGTAATTTTATAAACCAA
*
33905967 -AGTATTTT
1 GGGTATTTT
33905975 AAACATGGAT
Statistics
Matches: 106, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
52 7 0.07
53 72 0.68
54 27 0.25
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.42
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTATAAACCAA
Found at i:33905971 original size:26 final size:26
Alignment explanation
Indices: 33905808--33905974 Score: 181
Period size: 27 Copynumber: 6.3 Consensus size: 26
33905798 ACAAATTAGG
* *
33905808 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
33905835 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
33905862 GGTATTTTGGTAATTTTACAAACTAG
1 GGTATTTTGGTAATTTTACAAACCAA
*
33905888 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* * *
33905914 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
**
33905941 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
33905967 AGTATTTT
1 GGTATTTT
33905975 AAACATGGAT
Statistics
Matches: 124, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 52 0.42
27 72 0.58
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:33906971 original size:11 final size:12
Alignment explanation
Indices: 33906955--33906984 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
33906945 CGGGTGTTAC
33906955 AGAAATTGAAT-
1 AGAAATTGAATA
33906966 AGAAATTGAATA
1 AGAAATTGAATA
33906978 AGAAATT
1 AGAAATT
33906985 TAAATATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.57, C:0.00, G:0.17, T:0.27
Consensus pattern (12 bp):
AGAAATTGAATA
Found at i:33908489 original size:10 final size:10
Alignment explanation
Indices: 33908476--33908500 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
33908466 GATGACGGTT
33908476 CCTGACAATC
1 CCTGACAATC
33908486 CCTGACAATC
1 CCTGACAATC
33908496 CCTGA
1 CCTGA
33908501 GTCTGAGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.40, G:0.12, T:0.20
Consensus pattern (10 bp):
CCTGACAATC
Found at i:33911686 original size:47 final size:47
Alignment explanation
Indices: 33911612--33911738 Score: 141
Period size: 47 Copynumber: 2.7 Consensus size: 47
33911602 ACAATTGATA
* *
33911612 AGTACCTATACCATGG-CTCGTAACCAAATCAAGATAACTTATCCCAT-
1 AGTACCTATACCATGGCCT-GTAGCCAAATCAAGATAACTCAT-CCATG
* * *
33911659 AGTACCTATACCATGGCCTGTAGCCAAATCAAGGTAACTCCTCTATG
1 AGTACCTATACCATGGCCTGTAGCCAAATCAAGATAACTCATCCATG
* * * *
33911706 AATACCTATACCATGGCATGTAGCTACATCAAG
1 AGTACCTATACCATGGCCTGTAGCCAAATCAAG
33911739 GTATTATTCA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 3 0.04
47 64 0.93
48 2 0.03
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (47 bp):
AGTACCTATACCATGGCCTGTAGCCAAATCAAGATAACTCATCCATG
Found at i:33913397 original size:5 final size:5
Alignment explanation
Indices: 33913387--33913460 Score: 105
Period size: 5 Copynumber: 14.6 Consensus size: 5
33913377 AATATTAAAC
* *
33913387 TATAT TATAT TTTGAAT TATAT TA-AT TATAT TATGT TATAT TATAT TATAT
1 TATAT TATAT TAT--AT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
33913438 TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TAT
33913461 TATGAAATAA
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
4 4 0.06
5 54 0.87
7 4 0.06
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:33913868 original size:4 final size:4
Alignment explanation
Indices: 33913856--33913949 Score: 52
Period size: 4 Copynumber: 22.8 Consensus size: 4
33913846 TATAAGATAT
* *
33913856 AAAG AAAAG AAAG AAA- AAAA AAAG AAGG AAAG AACAG AATAG AAACG
1 AAAG -AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA-AG AA-AG AAA-G
** *
33913903 AAA- AACAGG GGAG AAAG AAAG AAAGG AAA- AAA- AAAG GAAG AAAG AAA
1 AAAG AA-A-G AAAG AAAG AAAG AAA-G AAAG AAAG AAAG AAAG AAAG AAA
33913950 AGGGAGAAAT
Statistics
Matches: 71, Mismatches: 10, Indels: 17
0.72 0.10 0.17
Matches are distributed among these distances:
3 11 0.15
4 39 0.55
5 21 0.30
ACGTcount: A:0.71, C:0.03, G:0.24, T:0.01
Consensus pattern (4 bp):
AAAG
Found at i:33913933 original size:27 final size:26
Alignment explanation
Indices: 33913861--33913949 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 26
33913851 GATATAAAGA
*
33913861 AAAGAAAGAAA-AAAAAAAGAAGGAAAG
1 AAAGAAAGAAACGAAAAAA-AAGG-AAG
* * *
33913888 AACAGAATAGAAACGAAAAACAGGGGAG
1 AA-AGAA-AGAAACGAAAAAAAAGGAAG
*
33913916 AAAGAAAGAAAGGAAAAAAAAAGGAAG
1 AAAGAAAGAAACG-AAAAAAAAGGAAG
33913943 AAAGAAA
1 AAAGAAA
33913950 AGGGAGAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
26 6 0.12
27 23 0.46
28 8 0.16
29 8 0.16
30 5 0.10
ACGTcount: A:0.71, C:0.03, G:0.25, T:0.01
Consensus pattern (26 bp):
AAAGAAAGAAACGAAAAAAAAGGAAG
Found at i:33913950 original size:13 final size:13
Alignment explanation
Indices: 33913917--33913958 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
33913907 ACAGGGGAGA
33913917 AAGAAAG-AAAGG
1 AAGAAAGAAAAGG
33913929 AA-AAA-AAAAGG
1 AAGAAAGAAAAGG
33913940 AAGAAAGAAAAGG
1 AAGAAAGAAAAGG
*
33913953 GAGAAA
1 AAGAAA
33913959 TAGGGATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 10 0.38
12 5 0.19
13 11 0.42
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (13 bp):
AAGAAAGAAAAGG
Found at i:33914359 original size:12 final size:11
Alignment explanation
Indices: 33914339--33914390 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
33914329 GTTAAGATTA
*
33914339 AAATTGAAATT
1 AAATAGAAATT
33914350 AAAGTAGAAATT
1 AAA-TAGAAATT
*
33914362 GAATAGAAATT
1 AAATAGAAATT
*
33914373 GAATAAGAAATTT
1 AAAT-AGAAA-TT
33914386 AAATA
1 AAATA
33914391 TTAAATTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 15 0.43
12 15 0.43
13 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (11 bp):
AAATAGAAATT
Found at i:33914370 original size:11 final size:11
Alignment explanation
Indices: 33914344--33914384 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
33914334 GATTAAAATT
*
33914344 GAAATTAAAGTA
1 GAAATTGAA-TA
33914356 GAAATTGAATA
1 GAAATTGAATA
33914367 GAAATTGAATAA
1 GAAATTGAAT-A
33914379 GAAATT
1 GAAATT
33914385 TAAATATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 12 0.44
12 15 0.56
ACGTcount: A:0.56, C:0.00, G:0.17, T:0.27
Consensus pattern (11 bp):
GAAATTGAATA
Found at i:33915807 original size:37 final size:37
Alignment explanation
Indices: 33915754--33915856 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
33915744 CGAATAGTCC
* *
33915754 CCACATGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
33915791 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
33915828 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
33915857 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:33916083 original size:48 final size:48
Alignment explanation
Indices: 33916026--33916267 Score: 421
Period size: 48 Copynumber: 5.0 Consensus size: 48
33916016 CTAGCCGAAT
*
33916026 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCG
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
33916074 CATTAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
33916122 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
33916170 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
33916218 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
33916266 CA
1 CA
33916268 TACATATTTC
Statistics
Matches: 184, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 184 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:33916190 original size:96 final size:96
Alignment explanation
Indices: 33916029--33916459 Score: 538
Period size: 109 Copynumber: 4.2 Consensus size: 96
33916019 GCCGAATCAC
* * *
33916029 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTTGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
*
33916094 CACATATACATATCTCATACATATTTCACAC
66 CACATATACATATCTCATACATATTTCACAT
* *
33916125 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
*
33916190 CACGTATACATATCTCATACATATTTCACAT
66 CACATATACATATCTCATACATATTTCACAT
33916221 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATACATATTTCACATTAGC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATA-TT----T-C--A---CAC--TAGC
*
33916286 CATTCGGCTTTACCACATATACATATCTCATACATATTTCCCAT
53 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
33916330 TAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATACATATTTCACATTAGC
1 TAGCCATTCGGCTTTACCACATATACATA--TC---------T--CATACATATTTCACACTAGC
*
33916395 CATTCGGCTTTACCACATATACATATCTCATATATATTTCACAT
53 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
33916439 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
33916460 CACATATATA
Statistics
Matches: 295, Mismatches: 14, Indels: 39
0.85 0.04 0.11
Matches are distributed among these distances:
96 128 0.43
97 1 0.00
101 1 0.00
102 1 0.00
104 1 0.00
107 3 0.01
109 142 0.48
111 4 0.01
114 1 0.00
116 1 0.00
117 1 0.00
120 1 0.00
121 2 0.01
122 8 0.03
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (96 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
CACATATACATATCTCATACATATTTCACAT
Found at i:33916269 original size:13 final size:13
Alignment explanation
Indices: 33916253--33916281 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
33916243 ATACATATCT
33916253 CATACATATTTCA
1 CATACATATTTCA
33916266 CATACATATTTCA
1 CATACATATTTCA
33916279 CAT
1 CAT
33916282 TAGCCATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (13 bp):
CATACATATTTCA
Found at i:33916286 original size:109 final size:109
Alignment explanation
Indices: 33916157--33916459 Score: 552
Period size: 109 Copynumber: 2.8 Consensus size: 109
33916147 ATACATATCT
* * *
33916157 CATACATAGTTCACACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCACATT
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
33916222 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
66 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
33916266 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCCCATT
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
*
33916331 AGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
66 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
33916375 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATT
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
33916440 AGCCATTCGGCTTTACCACA
66 AGCCATTCGGCTTTACCACA
33916460 CACATATATA
Statistics
Matches: 187, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
109 187 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (109 bp):
CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:33916288 original size:61 final size:61
Alignment explanation
Indices: 33916205--33916325 Score: 242
Period size: 61 Copynumber: 2.0 Consensus size: 61
33916195 ATACATATCT
33916205 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
33916266 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
33916326 CCATTAGCCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.36
Consensus pattern (61 bp):
CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:33916323 original size:48 final size:48
Alignment explanation
Indices: 33916266--33916377 Score: 206
Period size: 48 Copynumber: 2.3 Consensus size: 48
33916256 ACATATTTCA
33916266 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
*
33916314 CATACATATTTCCCATTAGCCATTCGGCTTTACCACATATACATATCT
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
*
33916362 CATATATATTTCACAT
1 CATACATATTTCACAT
33916378 ACATATTTCA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.37
Consensus pattern (48 bp):
CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
Found at i:33916366 original size:61 final size:61
Alignment explanation
Indices: 33916301--33916438 Score: 222
Period size: 61 Copynumber: 2.3 Consensus size: 61
33916291 GGCTTTACCA
* *
33916301 CATATACATATCTCATACATATTTCCCATTAGCCATTCGGCTTTACCACATATACATATCT
1 CATATACATATCACATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
* *
33916362 CATATATATTTCACATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 CATATACATATCACATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
* *
33916423 CATATATATTTCACAT
1 CATATACATATCACAT
33916439 TAGCCATTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 73 1.00
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.38
Consensus pattern (61 bp):
CATATACATATCACATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
Found at i:33916378 original size:13 final size:13
Alignment explanation
Indices: 33916347--33916390 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
33916337 TCGGCTTTAC
* *
33916347 CACATATACATAT
1 CACATATATATTT
*
33916360 CTCATATATATTT
1 CACATATATATTT
*
33916373 CACATACATATTT
1 CACATATATATTT
33916386 CACAT
1 CACAT
33916391 TAGCCATTCG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (13 bp):
CACATATATATTT
Found at i:33916415 original size:48 final size:48
Alignment explanation
Indices: 33916362--33916459 Score: 160
Period size: 48 Copynumber: 2.0 Consensus size: 48
33916352 ATACATATCT
* *
33916362 CATATATATTTCACATACATATTTCACATTAGCCATTCGGCTTTACCA
1 CATATACATATCACATACATATTTCACATTAGCCATTCGGCTTTACCA
* *
33916410 CATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCA
1 CATATACATATCACATACATATTTCACATTAGCCATTCGGCTTTACCA
33916458 CA
1 CA
33916460 CACATATATA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
CATATACATATCACATACATATTTCACATTAGCCATTCGGCTTTACCA
Found at i:33921229 original size:40 final size:40
Alignment explanation
Indices: 33921173--33921390 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
33921163 CGGATGATAA
* *
33921173 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
33921213 TCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
33921253 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
33921293 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
33921333 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TATCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
33921373 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
33921391 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 17 0.10
40 146 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:33929339 original size:40 final size:40
Alignment explanation
Indices: 33929282--33929499 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
33929272 CGGATGATAA
* *
33929282 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
33929322 CTGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
33929362 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
33929402 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
33929442 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TATCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
33929482 CC-GGCTAAATCTCGAAGG
1 CCGGGCTAAGTCCCGAAGG
33929500 TACTTGGCTT
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 16 0.10
40 148 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:33930966 original size:27 final size:27
Alignment explanation
Indices: 33930931--33931109 Score: 141
Period size: 27 Copynumber: 6.6 Consensus size: 27
33930921 TTAGTTTACC
* * *
33930931 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGGTTTGTA
33930958 AAATTACCAAAATATCCCT-GGTTTGTA
1 AAATTACCAAAATA-CCCTCGGTTTGTA
33930985 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
** * *
33931012 AAATTACCAAAATACCC-CTAATTTATG
1 AAATTACCAAAATACCCTC-GGTTTGTA
** ***
33931039 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
** **
33931066 AAATTATTGAAAA-ACCCTCGACTTGTA
1 AAATTA-CCAAAATACCCTCGGTTTGTA
*
33931093 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
33931110 CCGATTTACA
Statistics
Matches: 125, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
26 6 0.05
27 111 0.89
28 8 0.06
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGGTTTGTA
Found at i:33931162 original size:27 final size:27
Alignment explanation
Indices: 33931039--33931163 Score: 81
Period size: 27 Copynumber: 4.6 Consensus size: 27
33931029 CTAATTTATG
* * **
33931039 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTATTGAAATACCCTCGACTTACA
* **
33931066 AAATTATTGAAAAACCCTCGACTTGTA
1 AAATTATTGAAATACCCTCGACTTACA
** * *
33931093 AAATTA-CCAAAGTACCCCCGATTTACA
1 AAATTATTGAAA-TACCCTCGACTTACA
* * *** *
33931120 GAATTATCGTTTTACCCTCGATTTACA
1 AAATTATTGAAATACCCTCGACTTACA
33931147 AAATTATTGAAATACCC
1 AAATTATTGAAATACCC
33931164 CTGTAGGGTA
Statistics
Matches: 75, Mismatches: 21, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
26 3 0.04
27 71 0.95
28 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTATTGAAATACCCTCGACTTACA
Found at i:33931178 original size:27 final size:27
Alignment explanation
Indices: 33931155--33931286 Score: 183
Period size: 27 Copynumber: 4.9 Consensus size: 27
33931145 CAAAATTATT
*
33931155 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
33931182 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
33931209 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
33931236 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
33931263 GAGATACCCTTGTGGGGTAAAATT
1 GAAATACCCCTGTAGGGTAGAATT
33931287 TCCATTTTTC
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:33933191 original size:29 final size:29
Alignment explanation
Indices: 33933158--33933259 Score: 168
Period size: 29 Copynumber: 3.5 Consensus size: 29
33933148 GTGACGAGAT
*
33933158 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
33933187 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
33933216 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* *
33933245 CGGCACTAGGTGTGC
1 TGGCACTAAGTGTGC
33933260 GAGCTCGAAG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 69 1.00
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:33933288 original size:58 final size:58
Alignment explanation
Indices: 33933154--33933280 Score: 159
Period size: 58 Copynumber: 2.2 Consensus size: 58
33933144 TACGGTGACG
* * * *
33933154 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* *
33933211 ATATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* *
33933269 GGGTATGGCACT
1 AGATATGGCACT
33933281 GTGTGTGCGG
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
57 3 0.05
58 55 0.93
59 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.24
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:33945672 original size:40 final size:40
Alignment explanation
Indices: 33945627--33945793 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
33945617 CGGAATATAA
33945627 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
33945667 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
33945707 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
33945747 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
33945786 CCGGATAT
1 CCGGATAT
33945794 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:33945777 original size:80 final size:79
Alignment explanation
Indices: 33945643--33945793 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
33945633 ATAATCACGT
*
33945643 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
33945708 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
33945723 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
33945786 CCGGATAT
64 CCGGATAT
33945794 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:33947057 original size:56 final size:54
Alignment explanation
Indices: 33946984--33947096 Score: 131
Period size: 56 Copynumber: 2.1 Consensus size: 54
33946974 TCCTCCCCCT
33946984 TTTCCCTAGTAATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTCTTTTC
1 TTTCCCTAGTAATTTCGGCCAAGAAGATGGAG-AAGGATGAAC--ATTTTTCTTTTC
* *** *
33947040 TTTCCTTAGTACA-TTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTTC
1 TTTCCCTAGTA-ATTTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTCTTTTC
33947094 TTT
1 TTT
33947097 TTTTTTTCAT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
54 14 0.28
56 32 0.64
57 4 0.08
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (54 bp):
TTTCCCTAGTAATTTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTCTTTTC
Found at i:33951048 original size:49 final size:51
Alignment explanation
Indices: 33950934--33951060 Score: 179
Period size: 49 Copynumber: 2.5 Consensus size: 51
33950924 CGGATACCTG
* *
33950934 GTGGCCTGCACATAGTACCACACTTGTAGTCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTAGCCAAAGCTATC-TTCTTCACAAA
* *
33950986 GTGGCCTTCACATAGTATCACACTTGT-GACCAAAG-TATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTAG-CCAAAGCTATCTTCTTCACAAA
33951035 GTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
33951061 AGTCACTAGT
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
49 34 0.49
51 5 0.07
52 30 0.43
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTAGCCAAAGCTATCTTCTTCACAAA
Found at i:33953876 original size:29 final size:29
Alignment explanation
Indices: 33953852--33953945 Score: 161
Period size: 29 Copynumber: 3.2 Consensus size: 29
33953842 TCGCACACCC
* *
33953852 AGTGCCGTATTTTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
33953881 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
33953910 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
33953939 AGTGCCA
1 AGTGCCA
33953946 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:33953877 original size:58 final size:58
Alignment explanation
Indices: 33953814--33953945 Score: 158
Period size: 58 Copynumber: 2.3 Consensus size: 58
33953804 GATTTAAGCC
* * * * *
33953814 CGCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCA
* * * **
33953872 TGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
33953930 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
33953946 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
58 61 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
Found at i:33955137 original size:19 final size:18
Alignment explanation
Indices: 33955101--33955171 Score: 58
Period size: 19 Copynumber: 3.9 Consensus size: 18
33955091 AGAATGAACA
*
33955101 CTTTTTTTT-TTC-TTTT
1 CTTTTTTTTCTTCATATT
33955117 CTTTGTTTTTCTTCATATT
1 CTTT-TTTTTCTTCATATT
*
33955136 CTCTTTTTTTGTTCAT-TT
1 CT-TTTTTTTCTTCATATT
*
33955154 CTTTATTCTTTCTACATA
1 CTTT-TT-TTTCTTCATA
33955172 ATCCACTAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
16 4 0.09
17 7 0.16
18 9 0.20
19 22 0.50
20 2 0.05
ACGTcount: A:0.10, C:0.17, G:0.03, T:0.70
Consensus pattern (18 bp):
CTTTTTTTTCTTCATATT
Found at i:33955160 original size:25 final size:25
Alignment explanation
Indices: 33955111--33955162 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 25
33955101 CTTTTTTTTT
33955111 TCTTTTCTTTGTTTTTCTTCATATTC
1 TCTTTTCTTTGTTTTTCTT-ATATTC
33955137 TCTTTT-TTTGTTCATTTCTT-TATTC
1 TCTTTTCTTTGTT--TTTCTTATATTC
33955162 T
1 T
33955163 TTCTACATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 12 0.50
26 6 0.25
27 6 0.25
ACGTcount: A:0.08, C:0.17, G:0.04, T:0.71
Consensus pattern (25 bp):
TCTTTTCTTTGTTTTTCTTATATTC
Found at i:33960764 original size:26 final size:26
Alignment explanation
Indices: 33960722--33960819 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 26
33960712 GACCCCAAAT
* *
33960722 TGAT-AAATGACTATTTTTCCTTATG
1 TGATAAAATGATTGTTTTTCCTTATG
* *
33960747 TGATAAAATGATTGTTTTGCCTTTATA
1 TGATAAAATGATTGTTTTTCC-TTATG
* **
33960774 TGGTAAAACAACTAT-TTTTTCCCTTATG
1 TGATAAAATGA-T-TGTTTTT-CCTTATG
*
33960802 TGGTAAAATGATTGTTTT
1 TGATAAAATGATTGTTTT
33960820 GCCCCTTTGT
Statistics
Matches: 56, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
25 4 0.07
26 14 0.25
27 17 0.30
28 18 0.32
29 3 0.05
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (26 bp):
TGATAAAATGATTGTTTTTCCTTATG
Found at i:33960819 original size:28 final size:28
Alignment explanation
Indices: 33960735--33960819 Score: 84
Period size: 28 Copynumber: 3.1 Consensus size: 28
33960725 TAAATGACTA
*
33960735 TTTTT-CCTTATGTGATAAAATGATTG-
1 TTTTTCCCTTATGTGGTAAAATGATTGT
* * * ** * *
33960761 TTTTGCCTTTATATGGTAAAACAACTAT
1 TTTTTCCCTTATGTGGTAAAATGATTGT
33960789 TTTTTCCCTTATGTGGTAAAATGATTGT
1 TTTTTCCCTTATGTGGTAAAATGATTGT
33960817 TTT
1 TTT
33960820 GCCCCTTTGT
Statistics
Matches: 42, Mismatches: 15, Indels: 2
0.71 0.25 0.03
Matches are distributed among these distances:
26 4 0.10
27 14 0.33
28 24 0.57
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.49
Consensus pattern (28 bp):
TTTTTCCCTTATGTGGTAAAATGATTGT
Found at i:33960830 original size:27 final size:27
Alignment explanation
Indices: 33960740--33960823 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
33960730 GACTATTTTT
*
33960740 CCTTATGTGATAAAATGATTGTTTTGC
1 CCTTATGTGGTAAAATGATTGTTTTGC
* * ** *
33960767 CTTTATATGGTAAAACAACTAT-TTTTTC
1 CCTTATGTGGTAAAATGA-T-TGTTTTGC
33960795 CCTTATGTGGTAAAATGATTGTTTTGC
1 CCTTATGTGGTAAAATGATTGTTTTGC
33960822 CC
1 CC
33960824 CTTTGTGATA
Statistics
Matches: 43, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
26 1 0.02
27 21 0.49
28 20 0.47
29 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.44
Consensus pattern (27 bp):
CCTTATGTGGTAAAATGATTGTTTTGC
Found at i:33963537 original size:49 final size:49
Alignment explanation
Indices: 33963470--33964453 Score: 1680
Period size: 49 Copynumber: 20.1 Consensus size: 49
33963460 ACATAATAAT
* * *
33963470 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
33963519 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
* *
33963568 ATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAAGTGTATAG
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
* *
33963617 ATATGTGATAAGGCCTAATGGCCGACGTGGTGAATGTGAAAGTGTATAG
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
* *
33963666 ATATGTGATAAGGCCTAATGGCCGACGTGGTGAATGTGAAAGTGTATAG
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
* *
33963715 ATATGTGATAAGGCCTAATGGCCGACGTGGTGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
* *
33963764 ATATGTGATAAGGCCTAATGGCCGACGTGGTGAATGTGAAAGTGCATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
* *
33963813 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
* * *
33963862 ATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATAG
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
* *
33963911 ATATGTGATAAGGCCTAATGGCCGACGTGGTGAATGTGAAAGTGTATAG
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
*
33963960 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGCATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
*
33964009 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGCATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
*
33964058 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGCATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
*
33964107 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGCATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
*
33964156 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGCATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
*
33964205 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
*
33964254 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
* *
33964303 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAG
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
* *
33964352 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
*
33964401 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
33964450 ATAT
1 ATAT
33964454 ATGTGGTAAA
Statistics
Matches: 911, Mismatches: 24, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 911 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
Found at i:33964577 original size:37 final size:36
Alignment explanation
Indices: 33964522--33964608 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
33964512 AACTTAGAAA
33964522 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
33964560 TATGTCCGGGTATGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
33964597 TATGTCCGGGTA
1 TATGTCCGGGTA
33964609 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:33969168 original size:28 final size:28
Alignment explanation
Indices: 33969133--33969191 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
33969123 CTAGGGTATA
33969133 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
33969161 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
33969189 TCG
1 TCG
33969192 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:33970842 original size:20 final size:20
Alignment explanation
Indices: 33970819--33970856 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
33970809 CACATCCAAA
*
33970819 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
33970839 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
33970857 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:33977300 original size:21 final size:21
Alignment explanation
Indices: 33977260--33977307 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
33977250 TTTGGGTGGA
* * *
33977260 TCAGCTCTCACGAGCTTCTAT
1 TCAGCTCTCACAAACATCTAT
33977281 TCAGCTCTCACAAACATCTAT
1 TCAGCTCTCACAAACATCTAT
*
33977302 TTAGCT
1 TCAGCT
33977308 TTCAAGCTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.31, G:0.10, T:0.33
Consensus pattern (21 bp):
TCAGCTCTCACAAACATCTAT
Found at i:33979172 original size:40 final size:40
Alignment explanation
Indices: 33979113--33979254 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
33979103 AAATTGAATG
* * *
33979113 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
33979153 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
33979193 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
33979233 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
33979255 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:33979255 original size:40 final size:39
Alignment explanation
Indices: 33979152--33979280 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
33979142 TGCTGGAAAT
* * *
33979152 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
33979192 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
33979232 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
33979272 TATATCCGG
1 TATATCCGG
33979281 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:33988858 original size:48 final size:49
Alignment explanation
Indices: 33988754--33988884 Score: 149
Period size: 48 Copynumber: 2.7 Consensus size: 49
33988744 GGGTGAAGAT
* * * * *
33988754 GCCGACGCCATATCCCAAACATGGTCTTACACTGGCTTTCATATAGCGAG
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATATAGCCAG
*
33988804 GCCGATGCCATGTCCCAGACAGGTCTT-CACTGGCTCTCATCTA-CCAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCCAG
* * *
33988851 TGTCGATGCCATGTCGCAGATAGGTCTTACACTG
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTG
33988885 ACACATCATA
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
47 3 0.04
48 38 0.54
49 11 0.16
50 18 0.26
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCCAG
Found at i:33988964 original size:48 final size:46
Alignment explanation
Indices: 33988904--33989117 Score: 159
Period size: 46 Copynumber: 4.6 Consensus size: 46
33988894 AAGCTGACGC
* *
33988904 CATGTCCTAGACAAGTCTTACACTAGTTTGTATATCACGAGGCCGATG
1 CATGTCCCAGACAAGTCTTACACTAGTTTG-ATATCAC-AGGCTGATG
* * * * *
33988952 CATGTCCCAGACATGTCTTACACTAGCTCTCG-TCTCA-ATGCTAATG
1 CATGTCCCAGACAAGTCTTACACTAG-T-TTGATATCACAGGCTGATG
* *
33988998 CATGTCCCAGACATGTCTTACACTAG-TTGAAATATCTCAAGGCTGATG
1 CATGTCCCAGACAAGTCTTACACTAGTTTG--ATATCAC-AGGCTGATG
* * * * ***
33989046 CATGTCCTAGACATA-TCTTACACTAGCTCTCAT-GCTGTGGCTGATG
1 CATGTCCCAGACA-AGTCTTACACTAG-TTTGATATCACAGGCTGATG
*
33989092 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACAAGTCTTACACTAG
33989118 CACACATATC
Statistics
Matches: 134, Mismatches: 21, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
43 2 0.01
46 66 0.49
47 2 0.01
48 60 0.45
49 1 0.01
50 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACAAGTCTTACACTAGTTTGATATCACAGGCTGATG
Found at i:33989011 original size:46 final size:46
Alignment explanation
Indices: 33988948--33989118 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 46
33988938 TCACGAGGCC
*
33988948 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCT
* * * *
33988994 AATGCATGTCCCAGACATGTCTTACACTAGTTGAAAT-ATCTCAAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCT---CTCATCTCAATGCT
* * *
33989042 GATGCATGTCCTAGACATATCTTACACTAGCTCTCATGCT--GTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCAT-CTCAAT-GCT
33989088 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
33989119 ACACATATCA
Statistics
Matches: 105, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 1 0.01
46 64 0.61
47 2 0.02
48 37 0.35
49 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCT
Found at i:33989016 original size:94 final size:94
Alignment explanation
Indices: 33988904--33989117 Score: 281
Period size: 94 Copynumber: 2.3 Consensus size: 94
33988894 AAGCTGACGC
* * * * *
33988904 CATGTCCTAGACAAGTCTTACACTAGTTTG-TATATCACGAGGCCGATGCATGTCCCAGACATGT
1 CATGTCCCAGACATGTCTTACACTAG-TTGAAATATCACAAGGCCGATGCATGTCCCAGACATAT
*
33988968 CTTACACTAGCTCTCGT-CTCAAT-GCTAATG
65 CTTACACTAGCTCTCATGCT--ATGGCTAATG
* * *
33988998 CATGTCCCAGACATGTCTTACACTAGTTGAAATATCTCAAGGCTGATGCATGTCCTAGACATATC
1 CATGTCCCAGACATGTCTTACACTAGTTGAAATATCACAAGGCCGATGCATGTCCCAGACATATC
* *
33989063 TTACACTAGCTCTCATGCTGTGGCTGATG
66 TTACACTAGCTCTCATGCTATGGCTAATG
33989092 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
33989118 CACACATATC
Statistics
Matches: 106, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
93 4 0.04
94 100 0.94
95 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGTTGAAATATCACAAGGCCGATGCATGTCCCAGACATATC
TTACACTAGCTCTCATGCTATGGCTAATG
Found at i:34011663 original size:47 final size:45
Alignment explanation
Indices: 34011561--34011727 Score: 160
Period size: 47 Copynumber: 3.6 Consensus size: 45
34011551 TATGAGAGCC
* *
34011561 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTA-CC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTAGAGAT-A-TAGCT
* * *
34011609 AGAGTAAGACATATCTGGGACATGCATCGGCCTCGACAGATATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT--AGAGATATAGCT
* * * * *
34011656 AGTGTAAGACGTGTCTTGGACACGCATCGG-CTAAGAGTTGT-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-AGAGATATAGCT
34011700 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
34011728 AGCACCCATG
Statistics
Matches: 99, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
44 28 0.28
45 5 0.05
46 13 0.13
47 40 0.40
48 13 0.13
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGATATAGCT
Found at i:34018229 original size:19 final size:20
Alignment explanation
Indices: 34018205--34018242 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
34018195 TGGTACACCA
34018205 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
34018224 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
34018243 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:34018581 original size:93 final size:93
Alignment explanation
Indices: 34018471--34018641 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
34018461 GCCCCTAAGT
* *
34018471 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
34018536 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
34018564 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
34018629 CGAGTTCGGATGC
66 CGAGTTCGGATGC
34018642 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:34018638 original size:46 final size:46
Alignment explanation
Indices: 34018466--34018638 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
34018456 AACCCGCCCC
* * * *
34018466 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
34018512 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
34018560 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
34018605 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
34018639 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:34026707 original size:30 final size:30
Alignment explanation
Indices: 34026673--34026732 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
34026663 ATTTAATACG
34026673 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
34026703 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
34026733 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:34027426 original size:13 final size:14
Alignment explanation
Indices: 34027408--34027440 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
34027398 TTAGGCATAG
34027408 AATTT-CATCACGA
1 AATTTACATCACGA
34027421 AATTTCACATCACGA
1 AATTT-ACATCACGA
34027436 AATTT
1 AATTT
34027441 TCACACAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
15 13 0.72
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.33
Consensus pattern (14 bp):
AATTTACATCACGA
Found at i:34027433 original size:15 final size:16
Alignment explanation
Indices: 34027413--34027445 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
34027403 CATAGAATTT
34027413 CATCACGAAA-TTTCA
1 CATCACGAAATTTTCA
34027428 CATCACGAAATTTTCA
1 CATCACGAAATTTTCA
34027444 CA
1 CA
34027446 CAATCATGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.39, C:0.27, G:0.06, T:0.27
Consensus pattern (16 bp):
CATCACGAAATTTTCA
Found at i:34029661 original size:46 final size:46
Alignment explanation
Indices: 34029611--34029783 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
34029601 TGGTTGAGCA
*
34029611 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
34029657 TCCGAAATCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
34029704 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
34029750 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
34029784 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.58
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:34029767 original size:93 final size:93
Alignment explanation
Indices: 34029608--34029778 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
34029598 GGATGGTTGA
* * *
34029608 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAAATCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAAATCATTGAGT
34029673 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * **
34029701 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAAATCATTGAGT
*
34029766 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
34029779 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAAATCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34037399 original size:46 final size:46
Alignment explanation
Indices: 34037349--34037517 Score: 211
Period size: 46 Copynumber: 3.7 Consensus size: 46
34037339 TGAGCATCCA
34037349 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
34037395 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
34037442 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
34037488 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
34037518 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 9, Indels: 18
0.80 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 57 0.54
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:34037501 original size:93 final size:93
Alignment explanation
Indices: 34037342--34037512 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
34037332 GGATGGTTGA
* *
34037342 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
34037407 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
34037435 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
34037500 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
34037513 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34043651 original size:30 final size:30
Alignment explanation
Indices: 34043615--34043679 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
34043605 TTTTTTAAAT
34043615 AATTATTGAATTATTAAAAAATTTTATTTA
1 AATTATTGAATTATTAAAAAATTTTATTTA
*
34043645 AATTATTGAATTATTTAAAAATTTTATTTA
1 AATTATTGAATTATTAAAAAATTTTATTTA
34043675 AATTA
1 AATTA
34043680 ATGTGTTGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (30 bp):
AATTATTGAATTATTAAAAAATTTTATTTA
Found at i:34043666 original size:19 final size:19
Alignment explanation
Indices: 34043608--34043667 Score: 55
Period size: 19 Copynumber: 3.5 Consensus size: 19
34043598 TAGAATTTTT
34043608 TTTAAATAATTATTGAATTA
1 TTTAAA-AATTATTGAATTA
34043628 -TTAAAAA--ATT---TTA
1 TTTAAAAATTATTGAATTA
34043641 TTT--AAATTATTGAATTA
1 TTTAAAAATTATTGAATTA
34043658 TTTAAAAATT
1 TTTAAAAATT
34043668 TTATTTAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 17
0.65 0.00 0.35
Matches are distributed among these distances:
12 3 0.09
13 3 0.09
14 5 0.16
16 3 0.09
17 6 0.19
18 2 0.06
19 10 0.31
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TTTAAAAATTATTGAATTA
Found at i:34043673 original size:13 final size:13
Alignment explanation
Indices: 34043625--34043676 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
34043615 AATTATTGAA
*
34043625 TTATTAAAAAATT
1 TTATTTAAAAATT
*
34043638 TTATTTAAATTATT
1 TTATTTAAA-AATT
34043652 GAATTATTTAAAAATT
1 ---TTATTTAAAAATT
34043668 TTATTTAAA
1 TTATTTAAA
34043677 TTAATGTGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
13 17 0.53
14 3 0.09
16 3 0.09
17 9 0.28
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (13 bp):
TTATTTAAAAATT
Found at i:34044278 original size:22 final size:23
Alignment explanation
Indices: 34044234--34044284 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
34044224 GGTTCAATTG
* *
34044234 AATAAATT-ATTAAAAATAGATA
1 AATAATTTGATTAAAAACAGATA
*
34044256 ATTAATTTGATTAAAAACA-ATA
1 AATAATTTGATTAAAAACAGATA
34044278 AATAATT
1 AATAATT
34044285 AATTTTACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (23 bp):
AATAATTTGATTAAAAACAGATA
Found at i:34044677 original size:19 final size:19
Alignment explanation
Indices: 34044630--34044682 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
34044620 AAAACGATAA
34044630 AATCAAGTTAAAATGATTTC
1 AATCAAGTTAAAAT-ATTTC
**
34044650 AATTGAGTTAAACAT-TTTC
1 AATCAAGTTAAA-ATATTTC
34044669 AATCAAGTTAAAAT
1 AATCAAGTTAAAAT
34044683 TGTTTTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 2 0.07
19 14 0.50
20 10 0.36
21 2 0.07
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (19 bp):
AATCAAGTTAAAATATTTC
Found at i:34047253 original size:46 final size:44
Alignment explanation
Indices: 34047104--34047322 Score: 181
Period size: 46 Copynumber: 4.8 Consensus size: 44
34047094 TCACTTGTGT
* * * * *
34047104 GAGCTAGTGTAAGACATGTTTGAGACATGCATCGGCCACATTATGA-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC--GA-GAC
* * * *
34047150 GAGCCAGTGTAAAACCATGTCTGGGACATGGCATCAGCATTGAGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAC
34047196 GAGCACTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC
1 GAGC-C-AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC
* * *
34047242 GTAAGCCAGTGTAAGATATGTCTGGGACATGCATTGG-CTACGAGAT
1 G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGAC
* * *
34047288 GTGTCAGTGTAAGACCATGTATGGGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
34047323 AACATCTGAC
Statistics
Matches: 142, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 69 0.49
47 28 0.20
48 18 0.13
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC
Found at i:34049033 original size:28 final size:28
Alignment explanation
Indices: 34049000--34049056 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
34048990 AAAAGAACTC
34049000 TTTGAAAGAATATATAAAAATAATATTT
1 TTTGAAAGAATATATAAAAATAATATTT
34049028 TTTGAAAGAATATATAAAAATAATATTT
1 TTTGAAAGAATATATAAAAATAATATTT
34049056 T
1 T
34049057 ATCTTAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (28 bp):
TTTGAAAGAATATATAAAAATAATATTT
Found at i:34049180 original size:9 final size:9
Alignment explanation
Indices: 34049166--34049196 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
34049156 TGTTGGTCTT
34049166 ATCAATTCA
1 ATCAATTCA
34049175 ATCAATTCA
1 ATCAATTCA
*
34049184 ATCGATTCA
1 ATCAATTCA
34049193 ATCA
1 ATCA
34049197 GTTTGATTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.42, C:0.23, G:0.03, T:0.32
Consensus pattern (9 bp):
ATCAATTCA
Found at i:34056493 original size:46 final size:46
Alignment explanation
Indices: 34056426--34056554 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
34056416 TATTTGGGCA
*
34056426 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
34056472 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
34056518 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34056555 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:34060136 original size:46 final size:44
Alignment explanation
Indices: 34060044--34060248 Score: 207
Period size: 46 Copynumber: 4.5 Consensus size: 44
34060034 GTACCAATGC
* * * *
34060044 CATGTCCCCGACATGGTCTTACACTGACACATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAACTCGTCTCG-AGGCCGATG
34060089 CATGTCCCAGACATGTCTTACACTAACTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAAC-T-CGTCTCGAGGCCGATG
* * *
34060135 CATATCCCAGACATGTCTTACACTAGCACTCGTCTCAAAGCCGATG
1 CATGTCCCAGACATGTCTTACACTA--ACTCGTCTCGAGGCCGATG
* * *
34060181 CCATGTCCCAGACATGATCTTACACTAGCTC-TCTTAATGTGGCCGATG
1 -CATGTCCCAGACATG-TCTTACACTAACTCGTC-T--CGAGGCCGATG
34060229 CATGTCCCAGACATGTCTTA
1 CATGTCCCAGACATGTCTTA
34060249 TAGTAGCTCA
Statistics
Matches: 137, Mismatches: 13, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
44 12 0.09
45 16 0.12
46 60 0.44
47 30 0.22
48 19 0.14
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAACTCGTCTCGAGGCCGATG
Found at i:34061589 original size:51 final size:49
Alignment explanation
Indices: 34061534--34061669 Score: 130
Period size: 52 Copynumber: 2.7 Consensus size: 49
34061524 TTTAAAATGT
* * *
34061534 AAACTAAATGAACAAATGAGTTACCTAATGCATGACTTAATTTAATGATGC
1 AAACTAAAT-AACAAAGGAGTTACATAATGCATGACATAATTT-ATGATGC
* ** *
34061585 AAACTTTAACTAACATGGGAGTTACATAATGCATGTCATAATTTATGATGC
1 AAAC--TAAATAACAAAGGAGTTACATAATGCATGACATAATTTATGATGC
* *
34061636 AAACTTAACTAAC-ATGAGAGTTACATAATGCATG
1 AAAC-TAAATAACAAAG-GAGTTACATAATGCATG
34061670 GTTTTATTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
49 1 0.01
50 26 0.36
51 15 0.21
52 27 0.37
53 4 0.05
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (49 bp):
AAACTAAATAACAAAGGAGTTACATAATGCATGACATAATTTATGATGC
Found at i:34061661 original size:50 final size:52
Alignment explanation
Indices: 34061551--34061669 Score: 188
Period size: 50 Copynumber: 2.3 Consensus size: 52
34061541 ATGAACAAAT
* * *
34061551 GAGTTACCTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
*
34061603 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAAC-TTAACTAACATGA
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
34061653 GAGTTACATAATGCATG
1 GAGTTACATAATGCATG
34061670 GTTTTATTAA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 29 0.46
51 11 0.17
52 23 0.37
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
Found at i:34068848 original size:2 final size:2
Alignment explanation
Indices: 34068841--34068880 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
34068831 GGTTTCAGTT
34068841 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
34068881 AGTTTCTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:34069671 original size:30 final size:30
Alignment explanation
Indices: 34069637--34069698 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
34069627 GAATTTAATG
34069637 ATTAAGGATTAAATTGT-TGAAAT-AGAAAAA
1 ATTAA-GA-TAAATTGTGTGAAATGAGAAAAA
* *
34069667 ATTAATATAAATTGTGTGAAATGAGGAAAA
1 ATTAAGATAAATTGTGTGAAATGAGAAAAA
34069697 AT
1 AT
34069699 ATGGGCTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 8 0.29
29 7 0.25
30 13 0.46
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.31
Consensus pattern (30 bp):
ATTAAGATAAATTGTGTGAAATGAGAAAAA
Found at i:34072004 original size:26 final size:27
Alignment explanation
Indices: 34071941--34071995 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
34071931 CGATTTTCTC
34071941 TCACCAATTCCCCTTTTTCATTTTTTT
1 TCACCAATTCCCCTTTTTCATTTTTTT
34071968 TCACCAATTCCCCTTTTTCATTTTTTT
1 TCACCAATTCCCCTTTTTCATTTTTTT
34071995 T
1 T
34071996 TCTTTTTCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.15, C:0.29, G:0.00, T:0.56
Consensus pattern (27 bp):
TCACCAATTCCCCTTTTTCATTTTTTT
Found at i:34075878 original size:20 final size:21
Alignment explanation
Indices: 34075839--34075878 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
34075829 ATATAATATG
*
34075839 AAATATATATAATATTAATAA
1 AAATAAATATAATATTAATAA
*
34075860 AAATAAATA-AATCTTAATA
1 AAATAAATATAATATTAATA
34075879 CACAATGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (21 bp):
AAATAAATATAATATTAATAA
Found at i:34076023 original size:31 final size:30
Alignment explanation
Indices: 34075981--34076067 Score: 147
Period size: 31 Copynumber: 2.9 Consensus size: 30
34075971 GTCAAATTAG
*
34075981 TAAAAAGTAAATGAAAATATTTAGTTTTAC
1 TAAAAAATAAATGAAAATATTTAGTTTTAC
*
34076011 TAAAAAAATAAATGAAAATATGTAGTTTTAC
1 T-AAAAAATAAATGAAAATATTTAGTTTTAC
34076042 TAAAAAATAAATGAAAATATTTAGTT
1 TAAAAAATAAATGAAAATATTTAGTT
34076068 AAATTTTTCG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
30 25 0.47
31 28 0.53
ACGTcount: A:0.54, C:0.02, G:0.09, T:0.34
Consensus pattern (30 bp):
TAAAAAATAAATGAAAATATTTAGTTTTAC
Done.