Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 116 of 292
Found at i:35248104 original size:25 final size:25
Alignment explanation
Indices: 35248059--35248107 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
35248049 GAAAATAAAG
35248059 AAAAGAAAAGAAAAAGCAAAAGAAGA
1 AAAAGAAAAGAAAAA-CAAAAGAAGA
*
35248085 AAAAGAAAAAGAAATA-AAAAGAA
1 AAAAG-AAAAGAAAAACAAAAGAA
35248108 AAGAGAGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 5 0.24
27 9 0.43
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (25 bp):
AAAAGAAAAGAAAAACAAAAGAAGA
Found at i:35248188 original size:12 final size:12
Alignment explanation
Indices: 35248180--35248204 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35248170 TTTGAAAAGC
35248180 AAAAAGAAAATG
1 AAAAAGAAAATG
35248192 AAAAAGAAAATG
1 AAAAAGAAAATG
35248204 A
1 A
35248205 GACTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:35248201 original size:18 final size:18
Alignment explanation
Indices: 35248174--35248229 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
35248164 AAAGCCTTTG
35248174 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
35248193 AAAAGAAAATGAGACTGA
1 AAAAGAAAAAGAAAATGA
* *
35248211 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
35248228 AA
1 AA
35248230 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.05, G:0.20, T:0.05
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:35248214 original size:30 final size:31
Alignment explanation
Indices: 35248180--35248261 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
35248170 TTTGAAAAGC
35248180 AAAAAGAAAATGAAAAAGAAA-ATGAGACTG
1 AAAAAGAAAATGAAAAAGAAATATGAGACTG
* * * *
35248210 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGACTG
*
35248240 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
35248262 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.02, G:0.22, T:0.11
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGACTG
Found at i:35249409 original size:14 final size:14
Alignment explanation
Indices: 35249362--35249409 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
35249352 GTACGAATGG
*
35249362 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
35249376 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
35249390 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
35249404 ATTGGT
1 AATGGT
35249410 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:35253664 original size:30 final size:30
Alignment explanation
Indices: 35253630--35253726 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
35253620 AGCTCACTCC
35253630 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
35253660 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
35253690 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
35253720 TAGCTCA
1 TAGCTCA
35253727 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:35254860 original size:8 final size:8
Alignment explanation
Indices: 35254847--35254872 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
35254837 TGGCGTTCAC
35254847 CTATCCAT
1 CTATCCAT
35254855 CTATCCAT
1 CTATCCAT
35254863 CTATCCAT
1 CTATCCAT
35254871 CT
1 CT
35254873 TTCACCTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.38, G:0.00, T:0.38
Consensus pattern (8 bp):
CTATCCAT
Found at i:35255670 original size:30 final size:30
Alignment explanation
Indices: 35255584--35255681 Score: 88
Period size: 30 Copynumber: 3.3 Consensus size: 30
35255574 TTAAACTAAA
* * *
35255584 ATGAGCTAAGCTTTAGCTCGTCAGCTAAAG
1 ATGAGCTAAGATTTAGCTCGTAAGCTGAAG
* * * * *
35255614 TTGAGCTGAGATTAAACTCCTAAGCTGAAG
1 ATGAGCTAAGATTTAGCTCGTAAGCTGAAG
* * * *
35255644 CTGAGCTAAGGTTTAGCTCGTGAGCTGAAT
1 ATGAGCTAAGATTTAGCTCGTAAGCTGAAG
35255674 ATGAGCTA
1 ATGAGCTA
35255682 CGAGTGAGCT
Statistics
Matches: 51, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (30 bp):
ATGAGCTAAGATTTAGCTCGTAAGCTGAAG
Found at i:35257453 original size:20 final size:20
Alignment explanation
Indices: 35257423--35257460 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
35257413 ATATTCTTAG
35257423 ACATGTTAATTAGCTTAAGAA
1 ACATGTTAATTA-CTTAAGAA
35257444 ACAT-TTAATTACTTAAG
1 ACATGTTAATTACTTAAG
35257461 CTAAATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (20 bp):
ACATGTTAATTACTTAAGAA
Found at i:35258744 original size:7 final size:7
Alignment explanation
Indices: 35258711--35258915 Score: 96
Period size: 7 Copynumber: 28.9 Consensus size: 7
35258701 ACTAACTAAT
35258711 CTAAACC
1 CTAAACC
*
35258718 TTAAACCC
1 CTAAA-CC
*
35258726 CTAACCC
1 CTAAACC
35258733 CTAAACC
1 CTAAACC
*
35258740 CTAAATC
1 CTAAACC
* **
35258747 ATAAAAT
1 CTAAACC
* *
35258754 ATAAATC
1 CTAAACC
*
35258761 ATAAACC
1 CTAAACC
35258768 CTAAACCC
1 CTAAA-CC
*
35258776 CTAAAAC
1 CTAAACC
*
35258783 TTAAACC
1 CTAAACC
*
35258790 TTAAACC
1 CTAAACC
*
35258797 TTAAACC
1 CTAAACC
*
35258804 TTAAACC
1 CTAAACC
*
35258811 C-CAACC
1 CTAAACC
35258817 CTTAAA-C
1 C-TAAACC
*
35258824 AT-AACC
1 CTAAACC
*
35258830 CATAATCC
1 C-TAAACC
35258838 CTAAACC
1 CTAAACC
*
35258845 CATAATCC
1 C-TAAACC
*
35258853 ATAAACC
1 CTAAACC
*
35258860 TTAAA--
1 CTAAACC
*
35258865 ATAGTAACTC
1 CTA--AAC-C
*
35258875 ATAAACC
1 CTAAACC
*
35258882 TTAAACC
1 CTAAACC
35258889 CTAAACC
1 CTAAACC
35258896 CTAAACC
1 CTAAACC
35258903 CTAAACC
1 CTAAACC
35258910 CTAAAC
1 CTAAAC
35258916 TATAATGATA
Statistics
Matches: 156, Mismatches: 29, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
5 4 0.03
6 7 0.04
7 116 0.74
8 26 0.17
10 3 0.02
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:35258806 original size:21 final size:21
Alignment explanation
Indices: 35258755--35258920 Score: 95
Period size: 22 Copynumber: 7.8 Consensus size: 21
35258745 TCATAAAATA
* * *
35258755 TAAATCATAAACCCTAAACCCC
1 TAAACCATAAACCATAAA-CCT
* * *
35258777 TAAAACTTAAACCTTAAACCT
1 TAAACCATAAACCATAAACCT
* ** *
35258798 TAAACCTTAAACCCCAACCCT
1 TAAACCATAAACCATAAACCT
* * *
35258819 TAAA-CATAACCCATAATCCC
1 TAAACCATAAACCATAAACCT
*
35258839 TAAACCCATAATCCATAAACCT
1 TAAA-CCATAAACCATAAACCT
35258861 TAAA--ATAGTAACTCATAAACCT
1 TAAACCATA--AAC-CATAAACCT
* * *
35258883 TAAACCCTAAACCCTAAACCC
1 TAAACCATAAACCATAAACCT
* *
35258904 TAAACCCTAAACTATAA
1 TAAACCATAAACCATAA
35258921 TGATAATTAA
Statistics
Matches: 114, Mismatches: 23, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
19 3 0.03
20 14 0.12
21 47 0.41
22 48 0.42
24 2 0.02
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.22
Consensus pattern (21 bp):
TAAACCATAAACCATAAACCT
Found at i:35258809 original size:43 final size:42
Alignment explanation
Indices: 35258712--35258822 Score: 107
Period size: 43 Copynumber: 2.6 Consensus size: 42
35258702 CTAACTAATC
* *
35258712 TAAACCTTAAACCCCTAACCCCTAAACCCTAAATCATAAAATA
1 TAAACCTTAAA-CCCTAACCCCTAAAACCTAAACCATAAAATA
* * * * *
35258755 TAAATCATAAACCCTAAACCCCTAAAACTTAAACCTTAAACCT-
1 TAAACCTTAAACCCT-AACCCCTAAAACCTAAACCATAAA-ATA
* *
35258798 TAAACCTTAAACCCCAACCCTTAAA
1 TAAACCTTAAACCCTAACCCCTAAA
35258823 CATAACCCAT
Statistics
Matches: 55, Mismatches: 11, Indels: 5
0.77 0.15 0.07
Matches are distributed among these distances:
42 13 0.24
43 41 0.75
44 1 0.02
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (42 bp):
TAAACCTTAAACCCTAACCCCTAAAACCTAAACCATAAAATA
Found at i:35258846 original size:15 final size:15
Alignment explanation
Indices: 35258826--35258859 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
35258816 CCTTAAACAT
*
35258826 AACCCATAATCCCTA
1 AACCCATAATCCATA
35258841 AACCCATAATCCATA
1 AACCCATAATCCATA
35258856 AACC
1 AACC
35258860 TTAAAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.18
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:35259321 original size:38 final size:40
Alignment explanation
Indices: 35259223--35259325 Score: 104
Period size: 38 Copynumber: 2.6 Consensus size: 40
35259213 TTTTTGCGGT
* * * * *
35259223 GTTTTTAAAAAAGCACCACTAAAGCTCAATCTATAGCGGC
1 GTTTTTCAAAAAGCTCCGCTAATGCTCAATCTATAGCGAC
* * *
35259263 ATTTTTCAAAAAG-TGTCGCTAATGCT-GATCTATAGC-AC
1 GTTTTTCAAAAAGCT-CCGCTAATGCTCAATCTATAGCGAC
35259301 GTTTTTCAAAAAGCTCCGCTAATGC
1 GTTTTTCAAAAAGCTCCGCTAATGC
35259326 CACTAAAGCT
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
38 22 0.43
39 10 0.20
40 19 0.37
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (40 bp):
GTTTTTCAAAAAGCTCCGCTAATGCTCAATCTATAGCGAC
Found at i:35263606 original size:43 final size:41
Alignment explanation
Indices: 35263513--35263671 Score: 105
Period size: 41 Copynumber: 3.8 Consensus size: 41
35263503 CATTTTCCAA
*
35263513 TATGATTACTTTGGTTTATCTGATGATGCACTGTGTGCTAG
1 TATGATTGCTTTGGTTTATCTGATGATGCACTGTGTGCTAG
35263554 TAT-ATTTGCTTTGGTTTAT-TCGATGATGTGC-CATGTGTG-TCAG
1 TATGA-TTGCTTTGGTTTATCT-GATGA--TGCAC-TGTGTGCT-AG
* * * ** * *
35263597 TATGATTGCTTCGATTTAAACCAATGATG-AATGTTTGCTAG
1 TATGATTGCTTTGGTTT-ATCTGATGATGCACTGTGTGCTAG
** *
35263638 TAT-ATTTGCTTCAGTTTATCTGGTGATGCACTGT
1 TATGA-TTGCTTTGGTTTATCTGATGATGCACTGT
35263672 AACAGCCTGA
Statistics
Matches: 90, Mismatches: 15, Indels: 26
0.69 0.11 0.20
Matches are distributed among these distances:
40 10 0.11
41 45 0.50
42 5 0.06
43 24 0.27
44 6 0.07
ACGTcount: A:0.21, C:0.13, G:0.23, T:0.44
Consensus pattern (41 bp):
TATGATTGCTTTGGTTTATCTGATGATGCACTGTGTGCTAG
Found at i:35265021 original size:43 final size:43
Alignment explanation
Indices: 35264971--35265055 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
35264961 ATGTGATTCT
* * *
35264971 GATATGTGTTTACGA-GTAAGACCCTGTTTGGGACAGTGGCATC
1 GATATGTGGTTAC-ATGTAAGACCATGTCTGGGACAGTGGCATC
*
35265014 GATATGTGGTTACATGTAAGACCATGTCTGGGACATTGGCAT
1 GATATGTGGTTACATGTAAGACCATGTCTGGGACAGTGGCAT
35265056 TGTATGATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (43 bp):
GATATGTGGTTACATGTAAGACCATGTCTGGGACAGTGGCATC
Found at i:35269848 original size:68 final size:67
Alignment explanation
Indices: 35269776--35269925 Score: 180
Period size: 67 Copynumber: 2.2 Consensus size: 67
35269766 CATCATGTGT
* * * *
35269776 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
35269838 ATGTAG
62 ATGTAG
* * *
35269844 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
35269909 AG
66 AG
35269911 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
35269926 GATAAACTGG
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
64 20 0.28
65 7 0.10
66 5 0.07
67 27 0.38
68 13 0.18
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:35272221 original size:20 final size:20
Alignment explanation
Indices: 35272178--35272223 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
35272168 ACTGTTTTAT
*
35272178 TATGGG-CCAACTGTATTAA
1 TATGGGCCCAACTGTATCAA
* *
35272197 AATGGGCCCAACTGTGTCAA
1 TATGGGCCCAACTGTATCAA
35272217 TATGGGC
1 TATGGGC
35272224 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (20 bp):
TATGGGCCCAACTGTATCAA
Found at i:35273172 original size:16 final size:17
Alignment explanation
Indices: 35273140--35273172 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
35273130 CATCAAGAAG
35273140 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
35273158 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
35273173 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:35280638 original size:20 final size:21
Alignment explanation
Indices: 35280615--35280660 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
35280605 CCAACTCCCC
35280615 GAGCTCTA-ATCAGCTCGTTT
1 GAGCTCTATATCAGCTCGTTT
* *
35280635 GAGCT-TATTTCAGCTTGTTT
1 GAGCTCTATATCAGCTCGTTT
35280655 GAGCTC
1 GAGCTC
35280661 AATTTAGCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (21 bp):
GAGCTCTATATCAGCTCGTTT
Found at i:35280669 original size:20 final size:20
Alignment explanation
Indices: 35280624--35280669 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
35280614 CGAGCTCTAA
*
35280624 TCAGCTCGTTTGAGCTTATT
1 TCAGCTCGTTTGAGCTAATT
*
35280644 TCAGCTTGTTTGAGCTCAATT
1 TCAGCTCGTTTGAGCT-AATT
35280665 T-AGCT
1 TCAGCT
35280670 ACTTTTTAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.43
Consensus pattern (20 bp):
TCAGCTCGTTTGAGCTAATT
Found at i:35281261 original size:30 final size:31
Alignment explanation
Indices: 35281225--35281321 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
35281215 ATCTCACTCC
*
35281225 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
35281255 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
35281285 TAGCTCAAATTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
35281315 TAGCTCA
1 TAGCTCA
35281322 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
30 48 0.92
31 4 0.08
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:35282182 original size:15 final size:15
Alignment explanation
Indices: 35282162--35282209 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
35282152 TCAAAGATAG
35282162 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
35282177 GTTTATGTAGATG-G
1 GTTTATGGATATGAA
*
35282191 GTTTATGGATATAAA
1 GTTTATGGATATGAA
35282206 GTTT
1 GTTT
35282210 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:35282225 original size:29 final size:29
Alignment explanation
Indices: 35282156--35282215 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
35282146 AAGGATTCAA
* *
35282156 AGATAGGTTTATGGATATGAAGTTTATGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
*
35282185 AGATGGGTTTATGGATATAAAGTTTTTGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
35282214 AG
1 AG
35282216 GTTTGGTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (29 bp):
AGATGGGTTTATGGATATAAAGTTTATGT
Found at i:35283734 original size:10 final size:10
Alignment explanation
Indices: 35283719--35283745 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
35283709 TAAGTTGAAG
35283719 TTGAGCTGAT
1 TTGAGCTGAT
35283729 TTGAGCTGAT
1 TTGAGCTGAT
35283739 TTGAGCT
1 TTGAGCT
35283746 TGAAGGAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.30, T:0.41
Consensus pattern (10 bp):
TTGAGCTGAT
Found at i:35285859 original size:21 final size:21
Alignment explanation
Indices: 35285826--35285899 Score: 50
Period size: 21 Copynumber: 3.6 Consensus size: 21
35285816 AAGACACTCA
**
35285826 TTTTTTCAATTTCCTTCTCTT
1 TTTTTTCTTTTTCCTTCTCTT
35285847 TTTTTTCTTTTT-CTT-TAC-T
1 TTTTTTCTTTTTCCTTCT-CTT
**
35285866 GATTTTC-TTTTCAC-TCTCTT
1 TTTTTTCTTTTTC-CTTCTCTT
35285886 TTGTTTTCTTTTTC
1 TT-TTTTCTTTTTC
35285900 TGATTTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 13
0.68 0.10 0.22
Matches are distributed among these distances:
18 4 0.10
19 9 0.22
20 7 0.17
21 15 0.38
22 5 0.12
ACGTcount: A:0.07, C:0.20, G:0.03, T:0.70
Consensus pattern (21 bp):
TTTTTTCTTTTTCCTTCTCTT
Found at i:35288047 original size:18 final size:18
Alignment explanation
Indices: 35288019--35288054 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
35288009 TATGTTCAAA
35288019 TTTTCAGATTTTGTTTTTT
1 TTTTCAGATTTT-TTTTTT
35288038 TTTTCA-ATTTTTTTTTT
1 TTTTCAGATTTTTTTTTT
35288055 CAAATTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 5 0.29
19 6 0.35
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.78
Consensus pattern (18 bp):
TTTTCAGATTTTTTTTTT
Found at i:35288049 original size:14 final size:13
Alignment explanation
Indices: 35288032--35288079 Score: 62
Period size: 13 Copynumber: 3.8 Consensus size: 13
35288022 TCAGATTTTG
35288032 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
35288045 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
* * *
35288058 ATTTTGTTTT-GA
1 TTTTTTTTTTCAA
35288070 TTTTTTTTTT
1 TTTTTTTTTT
35288080 GAAACTTACT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
12 9 0.30
13 21 0.70
ACGTcount: A:0.12, C:0.04, G:0.04, T:0.79
Consensus pattern (13 bp):
TTTTTTTTTTCAA
Found at i:35294049 original size:46 final size:46
Alignment explanation
Indices: 35293996--35294169 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
35293986 TATTTGGGCA
35293996 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
35294042 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
35294089 TCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
35294134 -CCCAAGCTCGTTGAGTTG-GTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
35294170 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
43 4 0.04
44 2 0.02
45 23 0.21
46 70 0.64
47 7 0.06
49 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:35297505 original size:20 final size:21
Alignment explanation
Indices: 35297482--35297527 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
35297472 CCAACTCCCC
35297482 GAGCTCTA-ATCAGCTCGTTT
1 GAGCTCTATATCAGCTCGTTT
* *
35297502 GAGCT-TATTTCAGCTTGTTT
1 GAGCTCTATATCAGCTCGTTT
35297522 GAGCTC
1 GAGCTC
35297528 AATTTAGCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (21 bp):
GAGCTCTATATCAGCTCGTTT
Found at i:35297536 original size:20 final size:20
Alignment explanation
Indices: 35297491--35297536 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
35297481 CGAGCTCTAA
*
35297491 TCAGCTCGTTTGAGCTTATT
1 TCAGCTCGTTTGAGCTAATT
*
35297511 TCAGCTTGTTTGAGCTCAATT
1 TCAGCTCGTTTGAGCT-AATT
35297532 T-AGCT
1 TCAGCT
35297537 ACTTTTTAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.43
Consensus pattern (20 bp):
TCAGCTCGTTTGAGCTAATT
Found at i:35298184 original size:30 final size:30
Alignment explanation
Indices: 35298092--35298188 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
35298082 AGCTCACTCC
* * * *
35298092 TAGCTC-ACTTTCAACTCATGACCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAAGCT
* * * **
35298122 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAG-CT
35298152 TAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAGCT
35298182 TAGCTCA
1 TAGCTCA
35298189 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 13, Indels: 6
0.73 0.19 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.82
31 7 0.14
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAAGCT
Found at i:35298642 original size:76 final size:76
Alignment explanation
Indices: 35298558--35298720 Score: 326
Period size: 76 Copynumber: 2.1 Consensus size: 76
35298548 ATGTGTCAAA
35298558 TGCATGTATGGACATTAAAGGCTAGTCCATGAATGGATCAAATGCATGGGATGATAGAATGCATG
1 TGCATGTATGGACATTAAAGGCTAGTCCATGAATGGATCAAATGCATGGGATGATAGAATGCATG
35298623 AATGGCTTAAG
66 AATGGCTTAAG
35298634 TGCATGTATGGACATTAAAGGCTAGTCCATGAATGGATCAAATGCATGGGATGATAGAATGCATG
1 TGCATGTATGGACATTAAAGGCTAGTCCATGAATGGATCAAATGCATGGGATGATAGAATGCATG
35298699 AATGGCTTAAG
66 AATGGCTTAAG
35298710 TGCATGTATGG
1 TGCATGTATGG
35298721 TGGCTGTCTC
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 87 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (76 bp):
TGCATGTATGGACATTAAAGGCTAGTCCATGAATGGATCAAATGCATGGGATGATAGAATGCATG
AATGGCTTAAG
Found at i:35301560 original size:11 final size:11
Alignment explanation
Indices: 35301534--35301567 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
35301524 ATTGAGAATG
35301534 AAAAAGAAATAA
1 AAAAAGAAA-AA
*
35301546 AAAAAGAAAAC
1 AAAAAGAAAAA
35301557 AAAAAGAAAAA
1 AAAAAGAAAAA
35301568 GAGAACGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.85, C:0.03, G:0.09, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:35305651 original size:29 final size:29
Alignment explanation
Indices: 35305594--35305652 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
35305584 CACAAAAATT
35305594 AAAGCCCAAATAAAATCATAAAGTCCATA
1 AAAGCCCAAATAAAATCATAAAGTCCATA
*
35305623 AAAGTCCCAAAATAAAAT-AT-AAGTTCATA
1 AAAG-CCC-AAATAAAATCATAAAGTCCATA
35305652 A
1 A
35305653 TCATGAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 13 0.48
30 5 0.19
31 9 0.33
ACGTcount: A:0.56, C:0.17, G:0.07, T:0.20
Consensus pattern (29 bp):
AAAGCCCAAATAAAATCATAAAGTCCATA
Found at i:35315254 original size:13 final size:13
Alignment explanation
Indices: 35315236--35315271 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
35315226 TAAATCACTT
35315236 TTTTTTTTTCGAA
1 TTTTTTTTTCGAA
35315249 TTTTTTTTTCGAA
1 TTTTTTTTTCGAA
35315262 TTTTTTTTTC
1 TTTTTTTTTC
35315272 AAACTTGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.11, C:0.08, G:0.06, T:0.75
Consensus pattern (13 bp):
TTTTTTTTTCGAA
Found at i:35317263 original size:19 final size:19
Alignment explanation
Indices: 35317239--35317278 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
35317229 AGCTCCCATG
35317239 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
35317258 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
35317277 TA
1 TA
35317279 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:35318588 original size:779 final size:779
Alignment explanation
Indices: 35317091--35320099 Score: 5777
Period size: 779 Copynumber: 3.9 Consensus size: 779
35317081 GGTTGTATCA
* *
35317091 GTTATAGCTTTAGTTCAGCATGAGTGGGATGATGCCAATGCTAGACCTATCGAACCAGTTAGTGG
1 GTTATAGCTTTAGTTCAGCATGTGTGGGATGATGTCAATGCTAGACCTATCGAACCAGTTAGTGG
*
35317156 CCATTTTGGAAATCCATGCCGAACTTTTCTACAAGTTCAGTTCAGCTCATCGGGCTCACCTTCAG
66 CCATTTTGGAAATCCATGCCGAACTTTTCTACAAGTTCAGTTCAGCTCACCGGGCTCACCTTCAG
35317221 TTCAAGTTAGCTCCCATGTAGCTCCACACCAGCTCATTAGCTCGGGACCAGCTCATTATCAGCTC
131 TTCAAGTTAGCTCCCATGTAGCTCCACACCAGCTCATTAGCTCGGGACCAGCTCATTATCAGCTC
35317286 ACGAGTTTAAGCCCAGCTCGGGTTTAGCTCATGAATTAACCATCAGCTCGTGGAGTTCACTTTGA
196 ACGAGTTTAAGCCCAGCTCGGGTTTAGCTCATGAATTAACCATCAGCTCGTGGAGTTCACTTTGA
35317351 ATTCATTTGACTACTATTGACTTTTTAATTAATAAGTTCAATAATTAGTTAATTAATATCCTACA
261 ATTCATTTGACTACTATTGACTTTTTAATTAATAAGTTCAATAATTAGTTAATTAATATCCTACA
*
35317416 TATTAAATTTAGTTCACATTAACTATATTAAGTATGTCTTAAAAGTGTTTATTGATGATAATTAA
326 TATTAAATTTAGTTCACATTAGCTATATTAAGTATGTCTTAAAAGTGTTTATTGATGATAATTAA
35317481 ATTTGTCATAACCGAATTTAATGTTGATATTTGTGTTCACATTAGTTTGAATTAATTCTGTTCAC
391 ATTTGTCATAACCGAATTTAATGTTGATATTTGTGTTCACATTAGTTTGAATTAATTCTGTTCAC
*
35317546 ATTTCATGTAGAAATGCAATGGACATATGGAGATTAAAAGCAAGCATGAATTTTGAAGGTGCATG
456 ATTTCATGTAGAAACGCAATGGACATATGGAGATTAAAAGCAAGCATGAATTTTGAAGGTGCATG
35317611 GACGGTTGGGGGACTTGAATCTCTTAGGTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAA
521 GACGGTTGGGGGACTTGAATCTCTTAGGTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAA
35317676 TGTCTTTAAGGTTCATGAATGTTTCCATTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTG
586 TGTCTTTAAGGTTCATGAATGTTTCCATTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTG
* *
35317741 ACCATTCGGCCAGAGGACACTCACAGTGATACGATCACGGCTTCCCATAAGTCAAGTCCAAGCCG
651 ACCATTCGGCCAAAGGACACTCACACTGATACGATCACGGCTTCCCATAAGTCAAGTCCAAGCCG
35317806 AGATCCGATGGTGCTACCTCAAGGGCCGATCACAAGGGATCGTGCAAAACAATTTAAAGAAGCC
716 AGATCCGATGGTGCTACCTCAAGGGCCGATCACAAGGGATCGTGCAAAACAATTTAAAGAAGCC
*
35317870 GTTATAGCTTTAGTTCAGCATGTGTGGGATGATGTCAATTCTAGACCTATCGAACCAGTTAGTGG
1 GTTATAGCTTTAGTTCAGCATGTGTGGGATGATGTCAATGCTAGACCTATCGAACCAGTTAGTGG
35317935 CCATTTTGGAAATCCATGCCGAACTTTTCTACAAGTTCAGTTCAGCTCACCGGGCTCACCTTCAG
66 CCATTTTGGAAATCCATGCCGAACTTTTCTACAAGTTCAGTTCAGCTCACCGGGCTCACCTTCAG
*
35318000 TTCAAGTTAGCTCCCATGTAGCTCCACACCAGCTCATTAGCTCGGGACTAGCTCATTATCAGCTC
131 TTCAAGTTAGCTCCCATGTAGCTCCACACCAGCTCATTAGCTCGGGACCAGCTCATTATCAGCTC
* *
35318065 ACGAGTTTAAGCCCAGCTCGGTTTTAGCTCATGAATTAACCATCAGCTCGTTGAGTTCACTTTGA
196 ACGAGTTTAAGCCCAGCTCGGGTTTAGCTCATGAATTAACCATCAGCTCGTGGAGTTCACTTTGA
35318130 ATTCATTTGACTACTATTGACTTTTTAATTAATAAGTTCAATAATTAGTTAATTAATATCCTACA
261 ATTCATTTGACTACTATTGACTTTTTAATTAATAAGTTCAATAATTAGTTAATTAATATCCTACA
*
35318195 TATTAAATCTAGTTCACATTAGCTATATTAAGTATGTCTTAAAAGTGTTTATTGATGATAATTAA
326 TATTAAATTTAGTTCACATTAGCTATATTAAGTATGTCTTAAAAGTGTTTATTGATGATAATTAA
35318260 ATTTGTCATAACCGAATTTAATGTTGATATTTGTGTTCACATTAGTTTGAATTAATTCTGTTCAC
391 ATTTGTCATAACCGAATTTAATGTTGATATTTGTGTTCACATTAGTTTGAATTAATTCTGTTCAC
35318325 ATTTCATGTAGAAACGCAATGGACATATGGAGATTAAAAGCAAGCATGAATTTTGAAGGTGCATG
456 ATTTCATGTAGAAACGCAATGGACATATGGAGATTAAAAGCAAGCATGAATTTTGAAGGTGCATG
35318390 GACGGTTGGGGGACTTGAATCTCTTAGGTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAA
521 GACGGTTGGGGGACTTGAATCTCTTAGGTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAA
35318455 TGTCTTTAAGGTTCATGAATGTTTCCATTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTG
586 TGTCTTTAAGGTTCATGAATGTTTCCATTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTG
35318520 ACCATTCGGCCAAAGGACACTCACACTGATACGATCACGGCTTCCCATAAGTCAAGTCCAAGCCG
651 ACCATTCGGCCAAAGGACACTCACACTGATACGATCACGGCTTCCCATAAGTCAAGTCCAAGCCG
35318585 AGATCCGATGGTGCTACCTCAAGGGCCGATCACAAGGGATCGTGCAAAACAATTTAAAGAAGCC
716 AGATCCGATGGTGCTACCTCAAGGGCCGATCACAAGGGATCGTGCAAAACAATTTAAAGAAGCC
35318649 GTTATAGCTTTAGTTCAGCATGTGTGGGATGATGTCAATGCTAGACCTATCGAACCAGTTAGTGG
1 GTTATAGCTTTAGTTCAGCATGTGTGGGATGATGTCAATGCTAGACCTATCGAACCAGTTAGTGG
*
35318714 CCATTTTGGAAATCCATGCTGAACTTTTCTACAAGTTCAGTTCAGCTCACCGGGCTCACCTTCAG
66 CCATTTTGGAAATCCATGCCGAACTTTTCTACAAGTTCAGTTCAGCTCACCGGGCTCACCTTCAG
35318779 TTCAAGTTAGCTCCCATGTAGCTCCACACCAGCTCATTAGCTCGGGACCAGCTCATTATCAGCTC
131 TTCAAGTTAGCTCCCATGTAGCTCCACACCAGCTCATTAGCTCGGGACCAGCTCATTATCAGCTC
*
35318844 ACGAGTTTAAGCCCAGCTCAGGTTTAGCTCATGAATTAACCATCAGCTCGTGGAGTTCACTTTGA
196 ACGAGTTTAAGCCCAGCTCGGGTTTAGCTCATGAATTAACCATCAGCTCGTGGAGTTCACTTTGA
*
35318909 ATTCATTTGACTACTATTGACTTTTTAATTAATAAGTTCAATAATTAGTTAACTAATATCCTACA
261 ATTCATTTGACTACTATTGACTTTTTAATTAATAAGTTCAATAATTAGTTAATTAATATCCTACA
35318974 TATTAAATTTAGTTCACATTAGCTATATTAAGTATGTCTTAAAAGTGTTTATTGATGATAATTAA
326 TATTAAATTTAGTTCACATTAGCTATATTAAGTATGTCTTAAAAGTGTTTATTGATGATAATTAA
35319039 ATTTGTCATAACCGAATTTAATGTTGATATTTGTGTTCACATTAGTTTGAATTAATTCTGTTCAC
391 ATTTGTCATAACCGAATTTAATGTTGATATTTGTGTTCACATTAGTTTGAATTAATTCTGTTCAC
*
35319104 ATTTCTTGTAGAAACGCAATGGACATATGGAGATTAAAAGCAAGCATGAATTTTGAAGGTGCATG
456 ATTTCATGTAGAAACGCAATGGACATATGGAGATTAAAAGCAAGCATGAATTTTGAAGGTGCATG
35319169 GACGGTTGGGGGACTTGAATCTCTTAGGTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAA
521 GACGGTTGGGGGACTTGAATCTCTTAGGTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAA
35319234 TGTCTTTAAGGTTCATGAATGTTTCCATTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTG
586 TGTCTTTAAGGTTCATGAATGTTTCCATTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTG
35319299 ACCATTCGGCCAAAGGACACTCACACTGATACGATCACGGCTTCCCATAAGTCAAGTCCAAGCCG
651 ACCATTCGGCCAAAGGACACTCACACTGATACGATCACGGCTTCCCATAAGTCAAGTCCAAGCCG
35319364 AGATCCGATGGTGCTACCTCAAGGGCCGATCACAAGGGATCGTGCAAAACAATTTAAAGAAGCC
716 AGATCCGATGGTGCTACCTCAAGGGCCGATCACAAGGGATCGTGCAAAACAATTTAAAGAAGCC
35319428 GTTATAGCTTTAGTTCAGCATGTGTGGGATGATGTCAATGCTAGACCTATCGAACCAGTTAGTGG
1 GTTATAGCTTTAGTTCAGCATGTGTGGGATGATGTCAATGCTAGACCTATCGAACCAGTTAGTGG
*
35319493 CCATTTTGGAAATCCATGCTGAACTTTTCTACAAGTTCAGTTCAGCTCACCGGGCTCACCTTCAG
66 CCATTTTGGAAATCCATGCCGAACTTTTCTACAAGTTCAGTTCAGCTCACCGGGCTCACCTTCAG
35319558 TTCAAGTTAGCTCCCATGTAGCTCCACACCAGCTCATTAGCTCGGGACCAGCTCATTATCAGCTC
131 TTCAAGTTAGCTCCCATGTAGCTCCACACCAGCTCATTAGCTCGGGACCAGCTCATTATCAGCTC
*
35319623 ACGAGTTTAAGCCCAGCTCGGGTTTAGCTGATGAATTAACCATCAGCTCGTGGAGTTCACTTTGA
196 ACGAGTTTAAGCCCAGCTCGGGTTTAGCTCATGAATTAACCATCAGCTCGTGGAGTTCACTTTGA
*
35319688 ATTCATTTGACTACTATTGACTTTTTAATTAATAAGTTCAATAATTAGCTAATTAATATCCTACA
261 ATTCATTTGACTACTATTGACTTTTTAATTAATAAGTTCAATAATTAGTTAATTAATATCCTACA
*
35319753 TATTAAATTTAGTTCACATTAGTTATATTAAGTATGTCTTAAAAGTGTTTATTGATGATAATTAA
326 TATTAAATTTAGTTCACATTAGCTATATTAAGTATGTCTTAAAAGTGTTTATTGATGATAATTAA
*
35319818 ATTTGTCATAACCGAATTTAATGTTGATATTTGTGTTCACATTAGTTTGAATTAATTTTGTTCAC
391 ATTTGTCATAACCGAATTTAATGTTGATATTTGTGTTCACATTAGTTTGAATTAATTCTGTTCAC
* *
35319883 ATTTCTTGTAGAAACACAATGGACATATGGAGATTAAAAGCAAGCATGAATTTTGAAGGTGCATG
456 ATTTCATGTAGAAACGCAATGGACATATGGAGATTAAAAGCAAGCATGAATTTTGAAGGTGCATG
* *
35319948 GACGGTTAGGGGACTTGAATCTCTTAGGAGCATGTTCGGCCAAGTGCATGTATGACCATATTCAA
521 GACGGTTGGGGGACTTGAATCTCTTAGGTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAA
*
35320013 TGTCTTTAAGGTTCAAGAATGTTTCCATTCATGTATGGTGTG-TATCTCTTCATTCTCCAAGGTG
586 TGTCTTTAAGGTTCATGAATGTTTCCATTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTG
35320077 ACCATTCGGCCAAAGGACACTCA
651 ACCATTCGGCCAAAGGACACTCA
35320100 AACATGCATG
Statistics
Matches: 2199, Mismatches: 31, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
778 45 0.02
779 2154 0.98
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (779 bp):
GTTATAGCTTTAGTTCAGCATGTGTGGGATGATGTCAATGCTAGACCTATCGAACCAGTTAGTGG
CCATTTTGGAAATCCATGCCGAACTTTTCTACAAGTTCAGTTCAGCTCACCGGGCTCACCTTCAG
TTCAAGTTAGCTCCCATGTAGCTCCACACCAGCTCATTAGCTCGGGACCAGCTCATTATCAGCTC
ACGAGTTTAAGCCCAGCTCGGGTTTAGCTCATGAATTAACCATCAGCTCGTGGAGTTCACTTTGA
ATTCATTTGACTACTATTGACTTTTTAATTAATAAGTTCAATAATTAGTTAATTAATATCCTACA
TATTAAATTTAGTTCACATTAGCTATATTAAGTATGTCTTAAAAGTGTTTATTGATGATAATTAA
ATTTGTCATAACCGAATTTAATGTTGATATTTGTGTTCACATTAGTTTGAATTAATTCTGTTCAC
ATTTCATGTAGAAACGCAATGGACATATGGAGATTAAAAGCAAGCATGAATTTTGAAGGTGCATG
GACGGTTGGGGGACTTGAATCTCTTAGGTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAA
TGTCTTTAAGGTTCATGAATGTTTCCATTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTG
ACCATTCGGCCAAAGGACACTCACACTGATACGATCACGGCTTCCCATAAGTCAAGTCCAAGCCG
AGATCCGATGGTGCTACCTCAAGGGCCGATCACAAGGGATCGTGCAAAACAATTTAAAGAAGCC
Found at i:35318821 original size:19 final size:19
Alignment explanation
Indices: 35318797--35318836 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
35318787 AGCTCCCATG
35318797 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
35318816 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
35318835 TA
1 TA
35318837 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:35319600 original size:19 final size:19
Alignment explanation
Indices: 35319576--35319615 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
35319566 AGCTCCCATG
35319576 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
35319595 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
35319614 TA
1 TA
35319616 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:35321253 original size:11 final size:11
Alignment explanation
Indices: 35321237--35321286 Score: 68
Period size: 10 Copynumber: 4.6 Consensus size: 11
35321227 TATACAAGTT
35321237 AAAAAAAATTC
1 AAAAAAAATTC
35321248 -AAAAAAATTC
1 AAAAAAAATTC
*
35321258 GAAAAAAAATCC
1 -AAAAAAAATTC
35321270 AAAAAAAATT-
1 AAAAAAAATTC
35321280 AAAAAAA
1 AAAAAAA
35321287 TAAAAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
10 17 0.49
11 9 0.26
12 9 0.26
ACGTcount: A:0.76, C:0.08, G:0.02, T:0.14
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:35325644 original size:14 final size:14
Alignment explanation
Indices: 35325627--35325666 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
35325617 CGAATGGAAT
*
35325627 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
35325641 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
* *
35325655 GATATGAACAAA
1 GGTAGGAACAAA
35325667 TTGGTCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:35328977 original size:14 final size:14
Alignment explanation
Indices: 35328960--35328988 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
35328950 GTGTTCATAT
35328960 CCTTTCGTTCCTAC
1 CCTTTCGTTCCTAC
35328974 CCTTTCGTTCCTAC
1 CCTTTCGTTCCTAC
35328988 C
1 C
35328989 ATTCCATTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.45, G:0.07, T:0.41
Consensus pattern (14 bp):
CCTTTCGTTCCTAC
Found at i:35329520 original size:15 final size:16
Alignment explanation
Indices: 35329490--35329522 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
35329480 GTTGCTGTTA
*
35329490 GTTTTATTAGTTATTT
1 GTTTTAATAGTTATTT
35329506 GTTTTAATA-TTATTT
1 GTTTTAATAGTTATTT
35329521 GT
1 GT
35329523 CATAATCTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (16 bp):
GTTTTAATAGTTATTT
Found at i:35332353 original size:10 final size:10
Alignment explanation
Indices: 35332338--35332364 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
35332328 TACTCCTTCA
35332338 AGCTCAAATC
1 AGCTCAAATC
35332348 AGCTCAAATC
1 AGCTCAAATC
35332358 AGCTCAA
1 AGCTCAA
35332365 CTTCAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.30, G:0.11, T:0.19
Consensus pattern (10 bp):
AGCTCAAATC
Found at i:35339370 original size:14 final size:14
Alignment explanation
Indices: 35339338--35339372 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
35339328 TGACCAATTT
* *
35339338 GTTCATATCCTTTT
1 GTTCCTATCCTTTC
35339352 GTTCCTATCCTTTC
1 GTTCCTATCCTTTC
35339366 GTTCCTA
1 GTTCCTA
35339373 CCATTCCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.11, C:0.29, G:0.09, T:0.51
Consensus pattern (14 bp):
GTTCCTATCCTTTC
Found at i:35345713 original size:22 final size:20
Alignment explanation
Indices: 35345674--35345713 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
35345664 GCTGGAAATT
*
35345674 TCCTTGAAGTTTCTTGAATG
1 TCCTTGAAGTTCCTTGAATG
35345694 TCCTTGCAAGATTCCTTGAA
1 TCCTTG-AAG-TTCCTTGAA
35345714 GTTTCCTAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 3 0.18
22 8 0.47
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (20 bp):
TCCTTGAAGTTCCTTGAATG
Found at i:35346216 original size:52 final size:53
Alignment explanation
Indices: 35346154--35346257 Score: 174
Period size: 52 Copynumber: 2.0 Consensus size: 53
35346144 TCATTATGCC
35346154 GTCCCAAACAATGCACCAGCAGCTCCTTTAATGTTGTTTCCTG-ACCAGCAGT
1 GTCCCAAACAATGCACCAGCAGCTCCTTTAATGTTGTTTCCTGCACCAGCAGT
* * *
35346206 GTCCCAAACAATGCACCAGTAGCTCTTTTAATGTTGTTTCTTGCACCAGCAG
1 GTCCCAAACAATGCACCAGCAGCTCCTTTAATGTTGTTTCCTGCACCAGCAG
35346258 CTCTTTTAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
52 40 0.83
53 8 0.17
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (53 bp):
GTCCCAAACAATGCACCAGCAGCTCCTTTAATGTTGTTTCCTGCACCAGCAGT
Found at i:35346506 original size:24 final size:25
Alignment explanation
Indices: 35346479--35346533 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
35346469 GCAGCAACTA
* *
35346479 ATTAATT-TGTTCTAAATTAGACAC
1 ATTAATTATGTCCTAAACTAGACAC
*
35346503 ATTAAATTATGTCCTAAGCTAGACAC
1 ATT-AATTATGTCCTAAACTAGACAC
35346529 ATTAA
1 ATTAA
35346534 ACACATATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
24 3 0.12
25 6 0.23
26 17 0.65
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (25 bp):
ATTAATTATGTCCTAAACTAGACAC
Found at i:35355742 original size:18 final size:18
Alignment explanation
Indices: 35355719--35355755 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
35355709 TATAACTTGA
35355719 TATATTTAGTAATTTTGT
1 TATATTTAGTAATTTTGT
35355737 TATATTTAGTAATTTTGT
1 TATATTTAGTAATTTTGT
35355755 T
1 T
35355756 TACTTCATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.11, T:0.62
Consensus pattern (18 bp):
TATATTTAGTAATTTTGT
Found at i:35357079 original size:22 final size:23
Alignment explanation
Indices: 35357057--35357108 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
35357047 ATGTTGTTAC
35357057 TTTTATTTTAT-TTTAAGACTACT
1 TTTTATTTT-TCTTTAAGACTACT
35357080 TTTTATTTTTCTTTAAG-CTTA-T
1 TTTTATTTTTCTTTAAGAC-TACT
35357102 TTTTATT
1 TTTTATT
35357109 AGGTTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.21, C:0.08, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTTATTTTTCTTTAAGACTACT
Found at i:35360452 original size:68 final size:68
Alignment explanation
Indices: 35360357--35360514 Score: 298
Period size: 68 Copynumber: 2.3 Consensus size: 68
35360347 TTCACTTGGA
* *
35360357 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
35360422 CGT
66 CGT
35360425 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
35360490 CGT
66 CGT
35360493 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
35360515 TATATAGTAT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:35367963 original size:71 final size:68
Alignment explanation
Indices: 35367872--35368065 Score: 259
Period size: 67 Copynumber: 2.8 Consensus size: 68
35367862 CGATTTATCT
* * * *
35367872 CGTAGCTCTCTTGTCTACATGGTG-TCCTTCACTTGGAATCACTCATGCT-ACCTAGCTACATTT
1 CGTAGCTCTCTTGTCTACATGG-GATACATC-C--CGAATCACACATG-TGACCTAGCTACATTT
35367935 ATCTCTCA
61 ATCTCTCA
*
35367943 CGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCTACATTTATCTC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGTGACCTAGCTACATTTATCTC
35368008 TCA
66 TCA
* *
35368011 CGTAGCTCT-TTATCTACATGGGATACATCCCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGTGACCTAGCTAC
35368066 TATATAGTAT
Statistics
Matches: 115, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
67 46 0.40
68 41 0.36
70 2 0.02
71 26 0.23
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (68 bp):
CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGTGACCTAGCTACATTTATCTC
TCA
Found at i:35368053 original size:67 final size:68
Alignment explanation
Indices: 35367921--35368065 Score: 274
Period size: 67 Copynumber: 2.1 Consensus size: 68
35367911 CACTCATGCT
*
35367921 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTATCTACATGGGATACATCCCGTATCACACAT
35367986 GTG
66 GTG
35367989 ACCTAGCTACATTTATCTCTCACGTAGCTCT-TTATCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTATCTACATGGGATACATCCCGTATCACACAT
35368053 GTG
66 GTG
35368056 ACCTAGCTAC
1 ACCTAGCTAC
35368066 TATATAGTAT
Statistics
Matches: 76, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
67 45 0.59
68 31 0.41
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.32
Consensus pattern (68 bp):
ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTATCTACATGGGATACATCCCGTATCACACAT
GTG
Found at i:35368082 original size:67 final size:67
Alignment explanation
Indices: 35367921--35368083 Score: 231
Period size: 67 Copynumber: 2.4 Consensus size: 67
35367911 CACTCATGCT
* * *
35367921 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATATATATCT-ACGTAGCTCTCTTATCTACATGGGATACATCCCGTATCACACAT
35367986 GTG
65 GTG
* *
35367989 ACCTAGCTACATTTATCTCTCACGTAGCTCT-TTATCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATATATATCT-ACGTAGCTCTCTTATCTACATGGGATACATCCCGTATCACACAT
35368053 GTG
65 GTG
35368056 ACCTAGCTACTATATAGTATCT-CGTAGC
1 ACCTAGCTAC-ATATA-TATCTACGTAGC
35368084 CTTCTTGTAC
Statistics
Matches: 90, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
67 51 0.57
68 35 0.39
69 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (67 bp):
ACCTAGCTACATATATATCTACGTAGCTCTCTTATCTACATGGGATACATCCCGTATCACACATG
TG
Found at i:35370795 original size:26 final size:27
Alignment explanation
Indices: 35370766--35370819 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
35370756 TCACACAAGT
*
35370766 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
35370792 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
35370819 T
1 T
35370820 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:35370850 original size:27 final size:27
Alignment explanation
Indices: 35370820--35371073 Score: 301
Period size: 27 Copynumber: 9.4 Consensus size: 27
35370810 GGGGCAAAAT
* * * *
35370820 GGTAATTTTACCCCACAAGAGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
35370847 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
35370874 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
35370901 GATAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
35370928 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
35370955 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
35370982 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
35371009 AATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
35371036 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
35371063 AGTAATTCTAC
1 GGTAATTCTAC
35371074 AACTTATCCA
Statistics
Matches: 194, Mismatches: 33, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 194 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:35370886 original size:54 final size:54
Alignment explanation
Indices: 35370820--35371073 Score: 355
Period size: 54 Copynumber: 4.7 Consensus size: 54
35370810 GGGGCAAAAT
* * * * **
35370820 GGTAATTTTACCCCACAAGAGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
* * * *
35370874 GGTATTTCTACCCTATAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
* *
35370928 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
* *
35370982 GGTAATTCTACCTTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
* * *
35371036 GGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTAC
35371074 AACTTATCCA
Statistics
Matches: 180, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 180 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
Found at i:35372990 original size:10 final size:10
Alignment explanation
Indices: 35372975--35373021 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
35372965 ACAAGTTTAA
35372975 AAAAAAATCG
1 AAAAAAATCG
35372985 AAAAAAATCG
1 AAAAAAATCG
**
35372995 AAAAAAATTT
1 AAAAAAATCG
35373005 AAAAAAATTC-
1 AAAAAAA-TCG
35373015 AAAAAAA
1 AAAAAAA
35373022 AAGTGATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
10 32 0.97
11 1 0.03
ACGTcount: A:0.74, C:0.06, G:0.04, T:0.15
Consensus pattern (10 bp):
AAAAAAATCG
Found at i:35378213 original size:19 final size:18
Alignment explanation
Indices: 35378189--35378227 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
35378179 AGCTCCCATG
35378189 TAGCTCCACACCAGCTCAT
1 TAGCT-CACACCAGCTCAT
**
35378208 TAGCTCGGACCAGCTCAT
1 TAGCTCACACCAGCTCAT
35378226 TA
1 TA
35378228 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.26, C:0.36, G:0.15, T:0.23
Consensus pattern (18 bp):
TAGCTCACACCAGCTCAT
Found at i:35381075 original size:30 final size:30
Alignment explanation
Indices: 35380980--35381076 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
35380970 AGCTCACTCC
*
35380980 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAACCT
* * * * * *
35381010 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* * *
35381040 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
35381070 TAGCTCA
1 TAGCTCA
35381077 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 46 0.92
31 4 0.08
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:35382800 original size:12 final size:12
Alignment explanation
Indices: 35382783--35382826 Score: 56
Period size: 11 Copynumber: 3.7 Consensus size: 12
35382773 TATACAAGTA
35382783 AAAAAAAATTCG
1 AAAAAAAATTCG
35382795 AAAAAAAAATTC-
1 -AAAAAAAATTCG
35382807 AAAAAAAA-TCG
1 AAAAAAAATTCG
35382818 AAAAGAAAA
1 AAAA-AAAA
35382827 AAAAATCTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 2 0.07
11 12 0.41
12 4 0.14
13 11 0.38
ACGTcount: A:0.75, C:0.07, G:0.07, T:0.11
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:35382800 original size:13 final size:13
Alignment explanation
Indices: 35382782--35382827 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
35382772 TTATACAAGT
35382782 AAAAAAAAATTCG
1 AAAAAAAAATTCG
35382795 AAAAAAAAATTC-
1 AAAAAAAAATTCG
35382807 -AAAAAAAA-TCG
1 AAAAAAAAATTCG
35382818 AAAAGAAAAA
1 AAAA-AAAAA
35382828 AAAATCTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.07
11 8 0.27
12 3 0.10
13 17 0.57
ACGTcount: A:0.76, C:0.07, G:0.07, T:0.11
Consensus pattern (13 bp):
AAAAAAAAATTCG
Found at i:35382829 original size:17 final size:17
Alignment explanation
Indices: 35382807--35382843 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
35382797 AAAAAAATTC
35382807 AAAAAAAATC-GAAAAGA
1 AAAAAAAATCTGAAAA-A
35382824 AAAAAAAATCTGAAAAA
1 AAAAAAAATCTGAAAAA
35382841 AAA
1 AAA
35382844 GTGTTTAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.78, C:0.05, G:0.08, T:0.08
Consensus pattern (17 bp):
AAAAAAAATCTGAAAAA
Found at i:35383761 original size:9 final size:10
Alignment explanation
Indices: 35383754--35383810 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
35383744 AAGAGAAAAC
35383754 AAAGAAAAGA
1 AAAGAAAAGA
35383764 AAAGAAAAAGA
1 AAAG-AAAAGA
*
35383775 AAA-AGAAGAA
1 AAAGAAAAG-A
35383785 AAAGAAAATGA
1 AAAGAAAA-GA
35383796 AATA-AAAAGA
1 AA-AGAAAAGA
35383806 AAAGA
1 AAAGA
35383811 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 5 0.13
10 13 0.33
11 19 0.49
12 2 0.05
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:35383764 original size:5 final size:5
Alignment explanation
Indices: 35383754--35383810 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
35383744 AAGAGAAAAC
*
35383754 AAAGA AAAGA AAAGAA AAAGA AAA-A GAAGAA AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAGA AAAGA AAAG-A AAAGA AAA-GA AA-AGA
35383801 AAAGA AAAGA
1 AAAGA AAAGA
35383811 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 26 0.59
6 13 0.30
7 1 0.02
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:35383887 original size:12 final size:12
Alignment explanation
Indices: 35383879--35383903 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35383869 TTTGAAAAGC
35383879 AAAAAGAAAATG
1 AAAAAGAAAATG
35383891 AAAAAGAAAATG
1 AAAAAGAAAATG
35383903 A
1 A
35383904 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:35383900 original size:18 final size:18
Alignment explanation
Indices: 35383873--35383928 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
35383863 AAAGCCTTTG
35383873 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
35383892 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
35383910 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
35383927 AA
1 AA
35383929 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:35383913 original size:30 final size:31
Alignment explanation
Indices: 35383879--35383960 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
35383869 TTTGAAAAGC
*
35383879 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
35383909 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
35383939 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
35383961 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:35386151 original size:30 final size:30
Alignment explanation
Indices: 35386056--35386152 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
35386046 AGCTCACTCC
*
35386056 TAGCTC-ACTTTCAACTCACAAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACAAGCTAAACCT
* * ** * * *
35386086 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTTAGCTCACAAGCTAAACCT
* *
35386116 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACAAGCTAAACCT
35386146 TAGCTCA
1 TAGCTCA
35386153 TTTTAGTTTA
Statistics
Matches: 49, Mismatches: 17, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
30 45 0.92
31 4 0.08
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACAAGCTAAACCT
Found at i:35387675 original size:27 final size:27
Alignment explanation
Indices: 35387640--35387884 Score: 269
Period size: 27 Copynumber: 9.1 Consensus size: 27
35387630 GGTCGTTATT
* *
35387640 TGACTGTAATACCCCTATAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
35387667 TGACCGTAAT-GCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
**
35387693 TGACAATAATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
35387720 TGACCGTAATGCCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
35387747 TGACCGTAAT-GCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * ***
35387773 TGGCTGTAATACTTTTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
35387800 TAACCATAATGCCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * * *
35387827 TTATCGTAATGCCCTTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
** * *
35387854 TGACCGTAATACTTCTGTATGGTAAAT
1 TGACCGTAATACCCCTGTAGGGTAAAA
35387881 TGAC
1 TGAC
35387885 GATTATGCCC
Statistics
Matches: 180, Mismatches: 36, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 45 0.25
27 135 0.75
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (27 bp):
TGACCGTAATACCCCTGTAGGGTAAAA
Found at i:35387783 original size:80 final size:80
Alignment explanation
Indices: 35387640--35387884 Score: 337
Period size: 80 Copynumber: 3.0 Consensus size: 80
35387630 GGTCGTTATT
* * * *
35387640 TGACTGTAATACCCCTATAGGGTAAAATGACCGTAATGCCCTGTAGGGTAAAATGACAATAATAC
1 TGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCTGTAGGGTAAAATGACAGTAATAC
**
35387705 CCCTGTAGGGTAAAA
66 TTCTGTAGGGTAAAA
* *
35387720 TGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCTGTAGGGTAAAATGGCTGTAATAC
1 TGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCTGTAGGGTAAAATGACAGTAATAC
*
35387785 TTTTGTAGGGTAAAA
66 TTCTGTAGGGTAAAA
* * * * *
35387800 TAACCATAATGCCCCTGTAGGGTAAAATTATCGTAATGCCCTTGTAGGGTAAAATGACCGTAATA
1 TGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCC-TGTAGGGTAAAATGACAGTAATA
* *
35387865 CTTCTGTATGGTAAAT
65 CTTCTGTAGGGTAAAA
35387881 TGAC
1 TGAC
35387885 GATTATGCCC
Statistics
Matches: 145, Mismatches: 19, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
80 108 0.74
81 37 0.26
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (80 bp):
TGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCTGTAGGGTAAAATGACAGTAATAC
TTCTGTAGGGTAAAA
Found at i:35387896 original size:54 final size:54
Alignment explanation
Indices: 35387646--35387884 Score: 293
Period size: 53 Copynumber: 4.5 Consensus size: 54
35387636 TATTTGACTG
* *
35387646 TAATACCCCTATAGGGTAAAATGACCGTAATGCCC-TGTAGGGTAAAATGACAA
1 TAATACCCCTGTAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCA
* *
35387699 TAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCG
1 TAATACCCCTGTAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCA
* * * * ** *
35387753 TAAT-GCCCTGTAGGGTAAAATGGCTGTAATACTTTTGTAGGGTAAAATAACCA
1 TAATACCCCTGTAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCA
* * * *
35387806 TAATGCCCCTGTAGGGTAAAATTATCGTAATGCCCTTGTAGGGTAAAATGACCG
1 TAATACCCCTGTAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCA
** * *
35387860 TAATACTTCTGTATGGTAAATTGAC
1 TAATACCCCTGTAGGGTAAAATGAC
35387885 GATTATGCCC
Statistics
Matches: 155, Mismatches: 29, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
53 78 0.50
54 77 0.50
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (54 bp):
TAATACCCCTGTAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCA
Found at i:35388292 original size:33 final size:32
Alignment explanation
Indices: 35388255--35388346 Score: 95
Period size: 33 Copynumber: 2.9 Consensus size: 32
35388245 TAATTGCATT
*
35388255 ACACTATACTGATACTGCAATGGGCTTAGGCCC
1 ACACTATACTGATACTG-AATGGGCTCAGGCCC
35388288 ACACTATTACTG-TA-T--A-GGGCTCAGGCCC
1 ACACTA-TACTGATACTGAATGGGCTCAGGCCC
* *
35388316 AAACTGTACTGATACTGAATAGGGCTCAGGC
1 ACACTATACTGATACTGAAT-GGGCTCAGGC
35388347 ACAGACTGTT
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
27 5 0.10
28 17 0.35
29 2 0.04
31 1 0.02
32 1 0.02
33 18 0.37
34 5 0.10
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (32 bp):
ACACTATACTGATACTGAATGGGCTCAGGCCC
Found at i:35389897 original size:18 final size:19
Alignment explanation
Indices: 35389861--35389898 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
35389851 AGGCCTTTTT
*
35389861 AGATTTTATTTTTAATTTG
1 AGATTTTATATTTAATTTG
*
35389880 AGATTTT-TATTTACTTTG
1 AGATTTTATATTTAATTTG
35389898 A
1 A
35389899 TTTATAATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.61
Consensus pattern (19 bp):
AGATTTTATATTTAATTTG
Found at i:35391928 original size:30 final size:30
Alignment explanation
Indices: 35391833--35391929 Score: 86
Period size: 30 Copynumber: 3.2 Consensus size: 30
35391823 AGCTCACTCC
** *
35391833 TAGCTCATTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * * * *
35391863 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * * *
35391893 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
35391923 TAGCTCA
1 TAGCTCA
35391930 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:35395401 original size:30 final size:30
Alignment explanation
Indices: 35395306--35395402 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
35395296 AGCTCACTCC
*
35395306 TAGCTCATA-TTCAGCTCACAAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * * *
35395336 TAGCTCAGCTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
35395366 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
35395396 TAGCTCA
1 TAGCTCA
35395403 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:35397055 original size:27 final size:27
Alignment explanation
Indices: 35396990--35397141 Score: 198
Period size: 27 Copynumber: 5.7 Consensus size: 27
35396980 TTTGGTTTAC
*
35396990 AAAATTACCAAAATA-CCCTGCTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * *
35397016 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
35397043 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
35397070 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
**
35397097 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* **
35397124 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
35397142 TCGACCTGTA
Statistics
Matches: 113, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
26 14 0.12
27 99 0.88
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:35397100 original size:54 final size:54
Alignment explanation
Indices: 35396984--35397141 Score: 221
Period size: 54 Copynumber: 2.9 Consensus size: 54
35396974 AAATACTTTG
* * *
35396984 GTTTACAAAATTACCAAAATA-CCCT-GCTTTGTAAAATTACTAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACTAAAATACCCCTA
*
35397037 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTA
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTA
* * * *
35397091 GTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCC
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCC
35397142 TCGACCTGTA
Statistics
Matches: 94, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 20 0.21
54 73 0.78
55 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTA
Found at i:35397129 original size:81 final size:80
Alignment explanation
Indices: 35396990--35397213 Score: 213
Period size: 81 Copynumber: 2.8 Consensus size: 80
35396980 TTTGGTTTAC
* * **
35396990 AAAATTACCAAAATACCCTGCTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
1 AAAATTACCAAAATACCCTGCTTTGTAAAATTACCAAAATACCCCTAATTTATAAAATTACCAAA
35397055 ATACCCCTAGTTTGT
66 ATACCCCTAGTTTGT
* * **
35397070 AAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTG
1 AAAATTACCAAAATA-CCCT-GCTTTGTAAAATTACCAAAATACCCCTAATTTATAAAATTACCA
* **
35397134 AAATA-CCCTCGACCTGT
64 AAATACCCCTAG-TTTGT
*** * * *
35397151 AAAATTATTGAAATACCCTCGAC-TTGTAAAATTACCAAAGTA-CCCTCGATTTATAGAATTACC
1 AAAATTACCAAAATACCCT-G-CTTTGTAAAATTACCAAAATACCCCT-AATTTATAAAATTACC
35397214 GTTTTACCCT
Statistics
Matches: 117, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
80 29 0.25
81 87 0.74
82 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGCTTTGTAAAATTACCAAAATACCCCTAATTTATAAAATTACCAAA
ATACCCCTAGTTTGT
Found at i:35397152 original size:54 final size:54
Alignment explanation
Indices: 35396990--35397213 Score: 220
Period size: 54 Copynumber: 4.2 Consensus size: 54
35396980 TTTGGTTTAC
** * * *
35396990 AAAATTACCAAAATA-CCCTGCTTTGTAAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGATTTGT
* * *
35397043 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGA-TTTGT
* * **
35397097 AAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGATTTGT
*** * * * * *
35397151 AAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTAT
1 AAAATTACCAAAATACCCCT-AATTTGTAAAATTACTAAAATACCCTCGATTTGT
*
35397205 AGAATTACC
1 AAAATTACC
35397214 GTTTTACCCT
Statistics
Matches: 138, Mismatches: 29, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
53 19 0.14
54 117 0.85
55 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGATTTGT
Found at i:35397155 original size:27 final size:27
Alignment explanation
Indices: 35397125--35397199 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
35397115 CTAATTTGTG
35397125 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
35397152 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
35397179 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
35397200 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:35397210 original size:27 final size:27
Alignment explanation
Indices: 35397191--35397618 Score: 447
Period size: 27 Copynumber: 15.9 Consensus size: 27
35397181 ATTACCAAAG
35397191 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
35397218 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
35397245 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
35397272 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
35397299 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
35397326 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * * *
35397353 TACCC-CTGATTTACATAATTATCATTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* *
35397380 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
35397407 TACCC-CTAATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * *
35397434 TACCC-CTGA-TTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * *
35397460 TATCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
35397487 TACCCTCGATTTACT-GAATTACTGTTT
1 TACCCTCGATTTA-TAGAATTACCGTTT
* **
35397514 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
35397541 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
35397568 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
35397595 TACCCTCGATTTACAAAATTACCG
1 TACCCTCGATTTATAGAATTACCG
35397619 AAATACCCTC
Statistics
Matches: 353, Mismatches: 39, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
26 27 0.08
27 324 0.92
28 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:35397249 original size:81 final size:81
Alignment explanation
Indices: 35397164--35397411 Score: 216
Period size: 81 Copynumber: 3.1 Consensus size: 81
35397154 ATTATTGAAA
* * *
35397164 TACCCTCGACTTGTAAAATTACCAAAGTACCCTC-GATTTATAGAATTACCGTTTTACCCTCGAT
1 TACCCTCGACTTATAAAATTACCAAAGTACCCTCAG-TTTACAGAATTACCATTTTACCCTCGAT
*
35397228 TTGTAAAATTACCGTTT
65 TTATAAAATTACCGTTT
* * **** *
35397245 TACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGACTTATAAAATTACCAAAGTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATT
*
35397310 TATAGAATTACCGTTT
66 TATAAAATTACCGTTT
* * **** * * *
35397326 TACCC-CTAATT-TACATAATTACCGTTTTACCC-CTGATTTACATAATTATCATTTTACCCTCG
1 TACCCTCGACTTATA-A-AATTACCAAAGTACCCTCAG-TTTACAGAATTACCATTTTACCCTCG
* * *
35397388 ACTTACAGAATTACCGTTT
63 ATTTATAAAATTACCGTTT
35397407 TACCC
1 TACCC
35397412 CTAATTTACA
Statistics
Matches: 142, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
79 2 0.01
80 6 0.04
81 133 0.94
82 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCGACTTATAAAATTACCAAAGTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATT
TATAAAATTACCGTTT
Found at i:35397625 original size:27 final size:27
Alignment explanation
Indices: 35397595--35397735 Score: 108
Period size: 27 Copynumber: 5.1 Consensus size: 27
35397585 ATTACTGTTT
*
35397595 TACCCTCGATTTACAAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACAGAAA
* **
35397622 TACCCTCAATTTGTAAAATTACCA-AAA
1 TACCCTCGATTTACAAAATTA-CAGAAA
*
35397649 TACCC-CTGATTTACAAAGTTACAGAAA
1 TACCCTC-GATTTACAAAATTACAGAAA
* * *
35397676 TACCCTTGACTTTTTA-AAAATTATAGAAG
1 TACCCTCGA---TTTACAAAATTACAGAAA
* * * *
35397705 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACAGAAA
35397732 TACC
1 TACC
35397736 TTTGGTTTGT
Statistics
Matches: 89, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
26 7 0.08
27 60 0.67
28 1 0.01
29 17 0.19
30 4 0.04
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACAGAAA
Found at i:35397740 original size:27 final size:26
Alignment explanation
Indices: 35397688--35397743 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
35397678 CCCTTGACTT
*
35397688 TTTAAAAATTATAGAAGTACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
35397714 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
35397741 TTT
1 TTT
35397744 GTTGATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:35397861 original size:27 final size:27
Alignment explanation
Indices: 35397797--35397861 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
35397787 ACCCCTAAAA
*
35397797 GGTAAAAAGACAGTAAAGCCCCTGTAG
1 GGTAAAATGACAGTAAAGCCCCTGTAG
* * *
35397824 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACAGTAA-AGCCCCTGTAG
35397851 GGTAAAATGAC
1 GGTAAAATGAC
35397862 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACAGTAAAGCCCCTGTAG
Found at i:35399052 original size:25 final size:25
Alignment explanation
Indices: 35399020--35399067 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
35399010 CTATAACATG
* * *
35399020 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
35399045 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
35399068 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:35399136 original size:20 final size:20
Alignment explanation
Indices: 35399111--35399169 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
35399101 TAAATATGGT
35399111 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
35399131 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
35399151 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
35399170 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:35399247 original size:24 final size:24
Alignment explanation
Indices: 35399220--35399386 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
35399210 GAGGAAGTGA
35399220 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
35399244 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
35399268 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
35399292 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
35399315 AAAAGGGCTTATGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
35399339 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
35399363 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
35399387 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 22 0.17
24 100 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:35399344 original size:71 final size:71
Alignment explanation
Indices: 35399220--35399387 Score: 248
Period size: 71 Copynumber: 2.3 Consensus size: 71
35399210 GAGGAAGTGA
35399220 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
35399285 AGTTATC
65 AGTTATC
* ** *
35399292 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCTCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
35399357 GTTATT
66 GTTATC
*
35399363 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
35399388 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
71 53 0.60
72 35 0.40
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:35399621 original size:38 final size:37
Alignment explanation
Indices: 35399578--35399678 Score: 115
Period size: 31 Copynumber: 2.8 Consensus size: 37
35399568 CGTTTACAGT
35399578 AATATGAAATATCAAAAGGCTTCGGCCCAGTAATATGA
1 AATATGAAATAT-AAAAGGCTTCGGCCCAGTAATATGA
*
35399616 AATATG------AAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATAAAAGGCTTCGGCCCAGTAATATGA
*
35399647 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATAT-AAAA-GGCTTCGGCCCAGT
35399679 GCATGATTGA
Statistics
Matches: 53, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
31 30 0.57
38 10 0.19
39 13 0.25
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.23
Consensus pattern (37 bp):
AATATGAAATATAAAAGGCTTCGGCCCAGTAATATGA
Found at i:35399652 original size:31 final size:31
Alignment explanation
Indices: 35399574--35399655 Score: 146
Period size: 31 Copynumber: 2.6 Consensus size: 31
35399564 ATACCGTTTA
*
35399574 CAGTAATATGAAATATCAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
35399605 CAGTAATATGAAATATGAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
*
35399636 CAGTATTATGAAATATGAAA
1 CAGTAATATGAAATATGAAA
35399656 TATGAAAAGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (31 bp):
CAGTAATATGAAATATGAAAAGGCTTCGGCC
Found at i:35402496 original size:48 final size:48
Alignment explanation
Indices: 35402420--35402515 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
35402410 AAAGGTAAGC
* * *
35402420 CATTAATAAAGTCCATGGTGATATGCTTCCATTTCAATTAAGGAATCT
1 CATTAATAAAGTCCATGGTGATACGCTTCCATTCCAACTAAGGAATCT
35402468 CATTAATAAAGTCCATGGTGATACGCTTCCATTCCAACTAAGGAATCT
1 CATTAATAAAGTCCATGGTGATACGCTTCCATTCCAACTAAGGAATCT
35402516 GGATAGGTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (48 bp):
CATTAATAAAGTCCATGGTGATACGCTTCCATTCCAACTAAGGAATCT
Found at i:35406847 original size:43 final size:43
Alignment explanation
Indices: 35406759--35406924 Score: 155
Period size: 43 Copynumber: 3.9 Consensus size: 43
35406749 AATGTGATAT
* * * *
35406759 TCGGGCCTC-GGCCTAGCAAGCTTTAA-GCTGGTGAATAATATTA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAATAA-A-TA
*
35406802 TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTGAGAT-AATA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA-ATAAATA
* *
35406845 TCGGGCTTTGGGCCTAGCAGGCTATAATGCCAGTGAAATGAAAT-
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTG-AAT-AAATA
** *
35406889 T-GGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAAT
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAT
35406925 GAGTTCAGAC
Statistics
Matches: 106, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
41 3 0.03
42 9 0.08
43 62 0.58
44 18 0.17
45 12 0.11
46 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (43 bp):
TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAATAAATA
Found at i:35406946 original size:41 final size:41
Alignment explanation
Indices: 35406857--35407003 Score: 118
Period size: 40 Copynumber: 3.6 Consensus size: 41
35406847 GGGCTTTGGG
* * * * *
35406857 CCTAGCAGGCTATAATGCCAGTGAAATGAAATT-GGGCTTCAAG
1 CCTAGCAGGCTA-AATGCCGGTG-AATG-AATTCAGACTTAAAA
* * *
35406900 CCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAAG
1 CCTAGCAGGCTAAATGCCGGTGAATGAATTCAGACTTAAAA
* *** * **
35406941 TCTAGCAGGCTTCGTGCCGGTG-ATGAATTCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGAATGAATTCAGACTTAAAA
35406981 CCTAGCAGGCTAAATGCCGGTGA
1 CCTAGCAGGCTAAATGCCGGTGA
35407004 TTTGATAAAA
Statistics
Matches: 82, Mismatches: 20, Indels: 6
0.76 0.19 0.06
Matches are distributed among these distances:
40 34 0.41
41 28 0.34
42 9 0.11
43 11 0.13
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAATGCCGGTGAATGAATTCAGACTTAAAA
Found at i:35407004 original size:40 final size:41
Alignment explanation
Indices: 35406813--35407003 Score: 163
Period size: 43 Copynumber: 4.6 Consensus size: 41
35406803 CGGGCTTCGG
* ***
35406813 GCCTAGCAGGCTATAATGCTGGTGAGAT-AATATCGGGCTTTGG
1 GCCTAGCAGGCTA-AATGCCGGTGA-ATGAAT-TCGGGCTTAAA
* *
35406856 GCCTAGCAGGCTATAATGCCAGTGAAATGAAATT-GGGCTTCAA
1 GCCTAGCAGGCTA-AATGCCGGTG-AATG-AATTCGGGCTTAAA
* * * *
35406899 GCCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
* *** *
35406940 GTCTAGCAGGCTTCGTGCCGGTG-ATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
*
35406980 ACCTAGCAGGCTAAATGCCGGTGA
1 GCCTAGCAGGCTAAATGCCGGTGA
35407004 TTTGATAAAA
Statistics
Matches: 118, Mismatches: 25, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
40 34 0.29
41 28 0.24
42 9 0.08
43 42 0.36
44 2 0.02
45 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (41 bp):
GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
Found at i:35409038 original size:8 final size:8
Alignment explanation
Indices: 35409025--35409049 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
35409015 AGGTTTGCAA
35409025 AAAAAAAT
1 AAAAAAAT
35409033 AAAAAAAT
1 AAAAAAAT
35409041 AAAAAAAT
1 AAAAAAAT
35409049 A
1 A
35409050 TTTTAGCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAAAT
Found at i:35410709 original size:38 final size:38
Alignment explanation
Indices: 35410666--35410829 Score: 202
Period size: 38 Copynumber: 4.3 Consensus size: 38
35410656 AAAGGCCTGA
* * * * *
35410666 ATATAATACCAGTACTAGGCCTGCGGGATTTAACCCAG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
35410704 ATATAATACCAGCACGAAGCTTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * *
35410742 ATATATTACCAGCACAAAGCCTGCGGGTCTTTAAGCCTGG
1 ATATATTACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGG
* *
35410782 ATATATTACCAGCACGAAGCCTGCGGTATTTAAGCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
35410820 ATATATTACC
1 ATATATTACC
35410830 TGTAACATCC
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
38 70 0.64
39 10 0.09
40 29 0.27
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (38 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:35410924 original size:23 final size:23
Alignment explanation
Indices: 35410898--35410941 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
35410888 CGTAAAAATA
* *
35410898 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
35410921 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
35410942 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:35413322 original size:48 final size:48
Alignment explanation
Indices: 35413258--35413405 Score: 242
Period size: 48 Copynumber: 3.1 Consensus size: 48
35413248 TTGATGTACA
*
35413258 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
35413306 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** *
35413354 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
35413402 AGAT
1 AGAT
35413406 GTGTATATAT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:35414306 original size:31 final size:31
Alignment explanation
Indices: 35414268--35414329 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
35414258 TTTTTAATTT
35414268 GCTTAAGACTTACTAAGCTTATAAAAGCTTA
1 GCTTAAGACTTACTAAGCTTATAAAAGCTTA
35414299 GCTTAAGACTTACTAAGCTTATAAAAGCTTA
1 GCTTAAGACTTACTAAGCTTATAAAAGCTTA
35414330 CTCTGTTGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (31 bp):
GCTTAAGACTTACTAAGCTTATAAAAGCTTA
Found at i:35414745 original size:38 final size:40
Alignment explanation
Indices: 35414702--35414778 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 40
35414692 GGGGTGTTAC
35414702 ATTACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGGATAT
1 ATTACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATAT
*
35414740 ATTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATA
1 ATTACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATA
35414779 CACATCAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 23 0.64
39 5 0.14
40 8 0.22
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (40 bp):
ATTACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATAT
Found at i:35415125 original size:43 final size:44
Alignment explanation
Indices: 35415054--35415144 Score: 132
Period size: 43 Copynumber: 2.1 Consensus size: 44
35415044 ACATAACATT
*
35415054 TCATTTCACCGGCATTATAGCCTGCTAGG-CTCAAAGCCCG-ATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCCT-AAAGCCCGAATA
* *
35415097 TCATCTCACTGGCATTATAGCCTGCTAGGCCTGAAGCCCGAATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCCTAAAGCCCGAATA
35415141 TCAT
1 TCAT
35415145 ATTTCGATAG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 34 0.79
44 9 0.21
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (44 bp):
TCATCTCACCGGCATTATAGCCTGCTAGGCCTAAAGCCCGAATA
Found at i:35422696 original size:30 final size:30
Alignment explanation
Indices: 35422601--35422697 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
35422591 AGCTCACTCC
*
35422601 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAACCT
* * * * * *
35422631 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* * *
35422661 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
35422691 TAGCTCA
1 TAGCTCA
35422698 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 46 0.92
31 4 0.08
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:35425284 original size:9 final size:10
Alignment explanation
Indices: 35425277--35425333 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
35425267 AAGAGAAAAC
35425277 AAAGAAAAGA
1 AAAGAAAAGA
35425287 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
35425299 AAAGAAGA-A
1 AAAGAAAAGA
35425308 AAAGAAAATGA
1 AAAGAAAA-GA
35425319 AATA-AAAAGA
1 AA-AGAAAAGA
35425329 AAAGA
1 AAAGA
35425334 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 9 0.23
10 9 0.23
11 15 0.38
12 6 0.15
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:35425300 original size:21 final size:20
Alignment explanation
Indices: 35425266--35425333 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
35425256 ACATTCTTGT
35425266 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAA-AAAAGA
*
35425287 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAGCAAAAAAAG-A
* *
35425308 AAAGAAAATGAAATAAAAAGA
1 AAAGAAAAAGCAA-AAAAAGA
35425329 AAAGA
1 AAAGA
35425334 GAGGCAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 8 0.20
21 27 0.68
22 5 0.12
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:35425301 original size:6 final size:5
Alignment explanation
Indices: 35425277--35425333 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
35425267 AAGAGAAAAC
*
35425277 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
35425324 AAAGA AAAGA
1 AAAGA AAAGA
35425334 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:35425308 original size:15 final size:14
Alignment explanation
Indices: 35425277--35425333 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
35425267 AAGAGAAAAC
35425277 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
35425293 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
35425308 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
35425324 AAAGAAAAGA
1 AAAGAAAAGA
35425334 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:35425413 original size:11 final size:12
Alignment explanation
Indices: 35425381--35425411 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
35425371 TTGAGAGAAC
35425381 TTGAAAAAGCCT
1 TTGAAAAAGCCT
35425393 TTGAAAAAGCCT
1 TTGAAAAAGCCT
35425405 TTGAAAA
1 TTGAAAA
35425412 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:35425422 original size:12 final size:12
Alignment explanation
Indices: 35425414--35425438 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35425404 TTTGAAAAGC
35425414 AAAAAGAAAATG
1 AAAAAGAAAATG
35425426 AAAAAGAAAATG
1 AAAAAGAAAATG
35425438 A
1 A
35425439 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:35425435 original size:18 final size:18
Alignment explanation
Indices: 35425408--35425463 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
35425398 AAAGCCTTTG
35425408 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
35425427 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
35425445 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
35425462 AA
1 AA
35425464 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:35425448 original size:30 final size:31
Alignment explanation
Indices: 35425414--35425495 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
35425404 TTTGAAAAGC
*
35425414 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
35425444 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
35425474 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
35425496 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:35427581 original size:20 final size:21
Alignment explanation
Indices: 35427538--35427594 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
35427528 AGCTCTGTCC
35427538 AGCTCAAATCCAGCTTATTCG
1 AGCTCAAATCCAGCTTATTCG
* * *
35427559 AGCTC-AATCCATCTTGTTTG
1 AGCTCAAATCCAGCTTATTCG
35427579 AGCT-AAA-CCGAGCTTA
1 AGCTCAAATCC-AGCTTA
35427595 CTCCTAGCTC
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
19 2 0.07
20 22 0.76
21 5 0.17
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (21 bp):
AGCTCAAATCCAGCTTATTCG
Found at i:35427694 original size:30 final size:30
Alignment explanation
Indices: 35427599--35427695 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
35427589 AGCTTACTCC
*
35427599 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAACCT
* * * * * *
35427629 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* * *
35427659 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
35427689 TAGCTCA
1 TAGCTCA
35427696 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 46 0.92
31 4 0.08
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:35440257 original size:39 final size:39
Alignment explanation
Indices: 35440214--35440331 Score: 119
Period size: 39 Copynumber: 3.0 Consensus size: 39
35440204 CCATGTTTCA
* * *
35440214 CATATAGTCACCTAACATACAAGCATATATCACCATACT
1 CATATAATCACCTAACATTCAAGCATATATCACAATACT
* * * * * * *
35440253 CATATAATCTCATGACGTTTAAGCATATGTCAAAATACT
1 CATATAATCACCTAACATTCAAGCATATATCACAATACT
* * *
35440292 CGTAAAATCACCTAACATTCAAGCATATACCACAATACT
1 CATATAATCACCTAACATTCAAGCATATATCACAATACT
35440331 C
1 C
35440332 TAAAATATAT
Statistics
Matches: 59, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.41, C:0.25, G:0.07, T:0.27
Consensus pattern (39 bp):
CATATAATCACCTAACATTCAAGCATATATCACAATACT
Found at i:35440828 original size:11 final size:11
Alignment explanation
Indices: 35440796--35440829 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
35440786 ACTAGCATTT
*
35440796 AACATATACAT
1 AACATATACAC
35440807 AACATATACAC
1 AACATATACAC
35440818 AACATATACAC
1 AACATATACAC
35440829 A
1 A
35440830 TTTACAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.21
Consensus pattern (11 bp):
AACATATACAC
Found at i:35453973 original size:132 final size:132
Alignment explanation
Indices: 35453736--35454000 Score: 530
Period size: 132 Copynumber: 2.0 Consensus size: 132
35453726 TTTCGGCCAT
35453736 ACTTGGACAAATTTGTTGTGGTATTTATAGATGACATCTTAATTTATTCGAAAGATGAGACAGCG
1 ACTTGGACAAATTTGTTGTGGTATTTATAGATGACATCTTAATTTATTCGAAAGATGAGACAGCG
35453801 CATGCCGAGCACTTGAAGATAGTTTTGAAAACTTTGAGAAATAAGTAGTTATATGCCAAGTTTAG
66 CATGCCGAGCACTTGAAGATAGTTTTGAAAACTTTGAGAAATAAGTAGTTATATGCCAAGTTTAG
35453866 TA
131 TA
35453868 ACTTGGACAAATTTGTTGTGGTATTTATAGATGACATCTTAATTTATTCGAAAGATGAGACAGCG
1 ACTTGGACAAATTTGTTGTGGTATTTATAGATGACATCTTAATTTATTCGAAAGATGAGACAGCG
35453933 CATGCCGAGCACTTGAAGATAGTTTTGAAAACTTTGAGAAATAAGTAGTTATATGCCAAGTTTAG
66 CATGCCGAGCACTTGAAGATAGTTTTGAAAACTTTGAGAAATAAGTAGTTATATGCCAAGTTTAG
35453998 TA
131 TA
35454000 A
1 A
35454001 AAGTGAATTT
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
132 133 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (132 bp):
ACTTGGACAAATTTGTTGTGGTATTTATAGATGACATCTTAATTTATTCGAAAGATGAGACAGCG
CATGCCGAGCACTTGAAGATAGTTTTGAAAACTTTGAGAAATAAGTAGTTATATGCCAAGTTTAG
TA
Found at i:35455739 original size:27 final size:26
Alignment explanation
Indices: 35455709--35455940 Score: 270
Period size: 27 Copynumber: 8.7 Consensus size: 26
35455699 TTAGTTTATC
*
35455709 AAATTATCAAAATACTCCTGGTTTGTA
1 AAATTACCAAAATAC-CCTGGTTTGTA
*
35455736 AAATTACCAAAATACCCTTGGTTT-CA
1 AAATTACCAAAATACCC-TGGTTTGTA
*
35455762 AAATTACCAAACTACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTA
* * *
35455789 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCC-TGGTTTGTA
35455816 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCC-TGGTTTGTA
*
35455843 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTA
*
35455870 AAATTACCAAAATACCTCTAGTTTGTA
1 AAATTACCAAAATACC-CTGGTTTGTA
* *
35455897 AAATTACC-AAATACCCCTGATTTGTG
1 AAATTACCAAAATA-CCCTGGTTTGTA
**
35455923 AAATTACTGAAATACCCT
1 AAATTACCAAAATACCCT
35455941 CGACCTATAA
Statistics
Matches: 181, Mismatches: 16, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
26 50 0.28
27 128 0.71
28 3 0.02
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGGTTTGTA
Found at i:35455954 original size:80 final size:80
Alignment explanation
Indices: 35455729--35456000 Score: 248
Period size: 80 Copynumber: 3.4 Consensus size: 80
35455719 AATACTCCTG
* * * ** *
35455729 GTTTGTAAAATTACCAAAATACCCTTGGTTT-CAAAATTACCAAACTACCCCTG-GTTTGTAAAA
1 GTTTGTAAAATTACC-AAATACCCTTGATTTGTAAAATTACCAAAATACCCC-GAGCCTATAAAA
*
35455792 TTACTAAAATACC-CTTT
64 TTACTAAAATACCTC-TA
* * * ** *
35455809 GTTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAAT
1 GTTTGTAAAATTACC-AAATACCCTTGATTTGTAAAATTACCAAAATACCCCGAGCCTATAAAAT
*
35455874 TACCAAAATACCTCTA
65 TACTAAAATACCTCTA
* * **
35455890 GTTTGTAAAATTACCAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGA-CCTATAAAAT
1 GTTTGTAAAATTACCAAATACCCTTGATTTGTAAAATTACCAAAATACCC-CGAGCCTATAAAAT
* * *
35455954 TATTGAAATACCT-TC
65 TACTAAAATACCTCTA
*
35455969 GACTTGTAAAATTACCAAAGTACCCTTGATTT
1 G-TTTGTAAAATTACCAAA-TACCCTTGATTT
35456001 ACAGAATTAT
Statistics
Matches: 164, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
79 2 0.01
80 93 0.57
81 68 0.41
82 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (80 bp):
GTTTGTAAAATTACCAAATACCCTTGATTTGTAAAATTACCAAAATACCCCGAGCCTATAAAATT
ACTAAAATACCTCTA
Done.