Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 121 of 292
Found at i:36463569 original size:41 final size:41
Alignment explanation
Indices: 36463516--36463624 Score: 130
Period size: 40 Copynumber: 2.7 Consensus size: 41
36463506 CGCTGACTCA
*
36463516 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC
* * * * * * **
36463557 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTT
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC
36463597 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
36463625 TAAACCCCGA
Statistics
Matches: 52, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
40 31 0.60
41 21 0.40
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.22
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC
Found at i:36468217 original size:46 final size:46
Alignment explanation
Indices: 36468167--36468339 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
36468157 TGGTTGAGCA
* *
36468167 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * * *
36468213 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
*
36468258 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
36468306 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
36468340 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 59 0.57
47 28 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:36468316 original size:93 final size:93
Alignment explanation
Indices: 36468164--36468334 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
36468154 GGATGGTTGA
* * * *
36468164 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
36468229 TGAGTCCAAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
*
36468257 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
36468322 TGAGTCCGAGTTC
66 TGAGTCCAAGTTC
36468335 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:36468600 original size:19 final size:20
Alignment explanation
Indices: 36468563--36468600 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
36468553 ATAAGGTGGT
36468563 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
36468583 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
36468601 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:36476289 original size:26 final size:27
Alignment explanation
Indices: 36476171--36476437 Score: 194
Period size: 27 Copynumber: 9.5 Consensus size: 27
36476161 AGTACCCCCA
*
36476171 ATTTACATAATTACCATTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCG
* * * **
36476198 ATTTATAGAAGTACCGTTTTACCCTTA
1 ATTTACAGAATTACCATTTTACCCTCG
* ** *
36476225 ATTTATAGAATTACTGTTTTACCCTTG
1 ATTTACAGAATTACCATTTTACCCTCG
*
36476252 ATTTACAAAATTACCATTTTACCC-CG
1 ATTTACAGAATTACCATTTTACCCTCG
* *
36476278 ATTTACATAATTACCATTTTACCCCCG
1 ATTTACAGAATTACCATTTTACCCTCG
* * *
36476305 TTTTACCCTCGACTTACAAAATTACCGTTTTACCCTCG
1 -ATT----T--AC--AG--AATTACCATTTTACCCTCG
* * * *
36476343 ATTTACAAAATTATCGTTTTACCGTCG
1 ATTTACAGAATTACCATTTTACCCTCG
* * *
36476370 ATTTATAGAATTACTATTTTACCCTTG
1 ATTTACAGAATTACCATTTTACCCTCG
* *
36476397 ATTTACAGAATTACTAATTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCG
*
36476424 ATTTACAAAATTAC
1 ATTTACAGAATTAC
36476438 AGAAATACCC
Statistics
Matches: 194, Mismatches: 34, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
26 24 0.12
27 141 0.73
28 2 0.01
29 1 0.01
31 2 0.01
32 1 0.01
33 1 0.01
34 2 0.01
36 1 0.01
37 2 0.01
38 17 0.09
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
ATTTACAGAATTACCATTTTACCCTCG
Found at i:36476308 original size:64 final size:65
Alignment explanation
Indices: 36476240--36476365 Score: 191
Period size: 64 Copynumber: 2.0 Consensus size: 65
36476230 TAGAATTACT
* * *
36476240 GTTTTACCCTTGATTTACAAAATTACCATTTTACCC-CGATTTACATAATTACCATTTTACCCCC
1 GTTTTACCCTCGACTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCCC
* * *
36476304 GTTTTACCCTCGACTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTACC
1 GTTTTACCCTCGACTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACC
36476366 GTCGATTTAT
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
64 33 0.60
65 22 0.40
ACGTcount: A:0.28, C:0.27, G:0.06, T:0.39
Consensus pattern (65 bp):
GTTTTACCCTCGACTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCCC
Found at i:36476328 original size:38 final size:37
Alignment explanation
Indices: 36476268--36476348 Score: 108
Period size: 38 Copynumber: 2.2 Consensus size: 37
36476258 AAAATTACCA
* *
36476268 TTTTACCCCGATTTACATAATTACCATTTTACCCCCG
1 TTTTACCCCGACTTACAAAATTACCATTTTACCCCCG
* *
36476305 TTTTACCCTCGACTTACAAAATTACCGTTTTACCCTCG
1 TTTTACCC-CGACTTACAAAATTACCATTTTACCCCCG
*
36476343 ATTTAC
1 TTTTAC
36476349 AAAATTATCG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
37 8 0.21
38 30 0.79
ACGTcount: A:0.25, C:0.31, G:0.06, T:0.38
Consensus pattern (37 bp):
TTTTACCCCGACTTACAAAATTACCATTTTACCCCCG
Found at i:36476446 original size:27 final size:27
Alignment explanation
Indices: 36476308--36476638 Score: 140
Period size: 27 Copynumber: 12.2 Consensus size: 27
36476298 ACCCCCGTTT
* * ***
36476308 TACCCTCGACTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACAGAAA
***
36476335 TACCCTCGATTTACAAAATTATC-GTTT
1 TACCCTCGATTTACAAAATTA-CAGAAA
* * * ***
36476362 TACCGTCGATTTATAGAATTACTA-TTT
1 TACCCTCGATTTACAAAATTAC-AGAAA
* * **
36476389 TACCCTTGATTTACAGAATTACTA-ATT
1 TACCCTCGATTTACAAAATTAC-AGAAA
36476416 TACCCTCGATTTACAAAATTACAGAAA
1 TACCCTCGATTTACAAAATTACAGAAA
* **
36476443 TACCCTCAATTTGTAAAATTATCA-AAA
1 TACCCTCGATTTACAAAATTA-CAGAAA
* **
36476470 TACCC-CTAGTTTGTAAAATTATCA-AAA
1 TACCCTCGA-TTTACAAAATTA-CAGAAA
* * *** *
36476497 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACAGAAA
* **
36476524 TACCCTCAATTTGTAAAATTACCA-AAA
1 TACCCTCGATTTACAAAATTA-CAGAAA
*
36476551 TACCC-CGATTTACAAAGTTACAGAAA
1 TACCCTCGATTTACAAAATTACAGAAA
** *
36476577 TACCCTTGTCTTTTTA-AAAATTATAGAAA
1 TACCC---TCGATTTACAAAATTACAGAAA
* * * *
36476606 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACAGAAA
36476633 TACCCT
1 TACCCT
36476639 TGGTTTGTAG
Statistics
Matches: 248, Mismatches: 41, Indels: 30
0.78 0.13 0.09
Matches are distributed among these distances:
25 2 0.01
26 29 0.12
27 193 0.78
28 4 0.02
29 15 0.06
30 5 0.02
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACAGAAA
Found at i:36476463 original size:81 final size:81
Alignment explanation
Indices: 36476305--36476463 Score: 185
Period size: 81 Copynumber: 2.0 Consensus size: 81
36476295 TTTACCCCCG
** *** * *
36476305 TTTTACCCTCGACTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTACCGTCG
1 TTTTACCCTCGACTTACAAAATTACCAATTTACCCTCGATTTACAAAATTATCGAAATACCCTCA
*
36476370 ATTTATAGAATTACTA
66 ATTTATAAAATTACTA
* * * *
36476386 TTTTACCCTTGATTTACAGAATTACTAATTTACCCTCGATTTACAAAATTA-CAGAAATACCCTC
1 TTTTACCCTCGACTTACAAAATTACCAATTTACCCTCGATTTACAAAATTATC-GAAATACCCTC
*
36476450 AATTTGTAAAATTA
65 AATTTATAAAATTA
36476464 TCAAAATACC
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
80 1 0.02
81 63 0.98
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (81 bp):
TTTTACCCTCGACTTACAAAATTACCAATTTACCCTCGATTTACAAAATTATCGAAATACCCTCA
ATTTATAAAATTACTA
Found at i:36476474 original size:81 final size:80
Alignment explanation
Indices: 36476389--36476582 Score: 198
Period size: 81 Copynumber: 2.4 Consensus size: 80
36476379 ATTACTATTT
* **
36476389 TACCCTTGATTTACAGAATTA-CTAATTTACCCTCGATTTACAAAATTACAGAAATACCCTCAAT
1 TACCCTAGATTTACA-AATTATC-AAAATACCCTCGATTTACAAAATTACAGAAATACCCTCAAT
*
36476453 TTGTAAAATTATCAAAA
64 TTGTAAAATTACCAAAA
* * * *** *
36476470 TACCCCTAGTTTGTA-AAATTATCAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTCAAT
1 TA-CCCTAGATT-TACAAATTATCAAAATACCCTCGATTTACAAAATTACAGAAATACCCTCAAT
36476534 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
*
36476551 TACCC-CGATTTACAAAGTTA-CAGAAATACCCT
1 TACCCTAGATTTACAAA-TTATCA-AAATACCCT
36476583 TGTCTTTTTA
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
78 2 0.02
79 8 0.09
80 15 0.16
81 58 0.62
82 9 0.10
83 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (80 bp):
TACCCTAGATTTACAAATTATCAAAATACCCTCGATTTACAAAATTACAGAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:36478078 original size:20 final size:20
Alignment explanation
Indices: 36478008--36478070 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
36477998 ATTTTGATAA
*
36478008 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
36478028 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
36478048 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
36478068 ACA
1 ACA
36478071 CGAGATGTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:36478181 original size:24 final size:24
Alignment explanation
Indices: 36478125--36478290 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
36478115 GAGGAAGTGA
36478125 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
36478148 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
36478172 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
36478196 AAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
36478220 -AAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
36478243 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
36478267 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36478291 ATGATAAAGC
Statistics
Matches: 130, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
23 43 0.33
24 76 0.58
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:36478194 original size:47 final size:48
Alignment explanation
Indices: 36478125--36478291 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
36478115 GAGGAAGTGA
*
36478125 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
* *
36478172 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
* *
36478220 -AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
*
36478267 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
36478292 TGATAAAGCA
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 66 0.61
48 31 0.28
49 12 0.11
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
Found at i:36478241 original size:71 final size:71
Alignment explanation
Indices: 36478125--36478290 Score: 253
Period size: 71 Copynumber: 2.3 Consensus size: 71
36478115 GAGGAAGTGA
* * *
36478125 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
36478190 GTTATC
66 GTTATC
*
36478196 AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
36478261 GTTATT
66 GTTATC
*
36478267 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
36478291 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 76 0.87
72 11 0.13
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:36478547 original size:31 final size:31
Alignment explanation
Indices: 36478484--36478547 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
36478474 CGTTTACCGT
* *
36478484 AAAGGCTTCGGCCCAGTAATATGGAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
36478515 AAAGGCTTCGGCCTAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36478546 AA
1 AA
36478548 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36484934 original size:31 final size:31
Alignment explanation
Indices: 36484893--36484956 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36484883 CCTTTTCATA
*
36484893 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
36484924 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
36484955 TT
1 TT
36484957 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:36485233 original size:23 final size:23
Alignment explanation
Indices: 36485170--36485309 Score: 185
Period size: 23 Copynumber: 6.1 Consensus size: 23
36485160 CCTTGCCTCT
*
36485170 TTTAATAACT-GGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
36485192 TTTTATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
36485214 TTTAATAACTGGGGCGTAAGCCGT
1 TTTAATAACTGGGGCATAAGCC-C
* *
36485238 TTTGATAACTGGGGCATAAGCCT
1 TTTAATAACTGGGGCATAAGCCC
*
36485261 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
36485284 ATTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
36485307 TTT
1 TTT
36485310 TTCACTTCCT
Statistics
Matches: 105, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
22 29 0.28
23 56 0.53
24 20 0.19
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:36485269 original size:47 final size:45
Alignment explanation
Indices: 36485168--36485310 Score: 173
Period size: 47 Copynumber: 3.1 Consensus size: 45
36485158 GGCCTTGCCT
*
36485168 CTTTTAATAACT-GGGCAAAAGCCCTTTTATAACT-GGGCATAAGC
1 CTTTTAATAACTGGGGCATAAG-CCTTTTATAACTGGGGCATAAGC
* *
36485212 CCTTTAATAACTGGGGCGTAAGCCGTTTTGATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGCC-TTTT-ATAACTGGGGCATAAGC
* * *
36485259 CTTTTGATAACTGGGGCATAAGCCCATTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-CCTTTTATAACTGGGGCATAAG-C
36485306 CTTTT
1 CTTTT
36485311 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
44 13 0.15
45 11 0.13
46 22 0.26
47 37 0.44
48 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (45 bp):
CTTTTAATAACTGGGGCATAAGCCTTTTATAACTGGGGCATAAGC
Found at i:36485385 original size:20 final size:20
Alignment explanation
Indices: 36485360--36485426 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
36485350 TTATGAATAC
36485360 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
36485380 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
36485400 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
36485420 ACCATGT
1 ATCATGT
36485427 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:36485391 original size:11 final size:11
Alignment explanation
Indices: 36485360--36485415 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
36485350 TTATGAATAC
36485360 ATCATGTGCAT
1 ATCATGTGCAT
*
36485371 ATCA--TACAT
1 ATCATGTGCAT
36485380 ATCATGTGCAT
1 ATCATGTGCAT
*
36485391 ATCA--TACAT
1 ATCATGTGCAT
*
36485400 GTCATGTGCAT
1 ATCATGTGCAT
36485411 ATCAT
1 ATCAT
36485416 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:36485495 original size:25 final size:25
Alignment explanation
Indices: 36485463--36485510 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36485453 ATACATAAAC
* * *
36485463 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
36485488 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
36485511 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:36499638 original size:29 final size:29
Alignment explanation
Indices: 36499568--36499728 Score: 96
Period size: 29 Copynumber: 5.6 Consensus size: 29
36499558 ATACTCGATT
* *
36499568 TCGCACACTTAGTGCCATGCGATT-AAGC
1 TCGCACACTTAGTGCCATACAATTCAAGC
* ** ** *
36499596 CCGCACACAGAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATACAATTCAAGC
* * *
36499625 TCGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATACAATTCAAGC
* * *
36499654 AT-GCACACTTAGTGCCATATATTTCCAGC
1 -TCGCACACTTAGTGCCATACAATTCAAGC
* *** *
36499683 AT-GCACACTCAGTGCCATATTTTTCCAGC
1 -TCGCACACTTAGTGCCATACAATTCAAGC
36499712 AT-GCACACTTAGTGCCA
1 -TCGCACACTTAGTGCCA
36499729 ATCTCGTCAC
Statistics
Matches: 114, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
28 18 0.16
29 95 0.83
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATACAATTCAAGC
Found at i:36503148 original size:33 final size:33
Alignment explanation
Indices: 36503106--36503172 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
36503096 TATGCGGCTT
36503106 TAGTTGTCTCGACGCGTAAGCCACAACTCGACC
1 TAGTTGTCTCGACGCGTAAGCCACAACTCGACC
36503139 TAGTTGTCTCGACGCGTAAGCCACAACTCGACC
1 TAGTTGTCTCGACGCGTAAGCCACAACTCGACC
36503172 T
1 T
36503173 TCTTGCATCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (33 bp):
TAGTTGTCTCGACGCGTAAGCCACAACTCGACC
Found at i:36509097 original size:29 final size:29
Alignment explanation
Indices: 36509027--36509187 Score: 96
Period size: 29 Copynumber: 5.6 Consensus size: 29
36509017 ATACTCGATT
* *
36509027 TCGCACACTTAGTGCCATGCGATT-AAGC
1 TCGCACACTTAGTGCCATACAATTCAAGC
* ** ** *
36509055 CCGCACACACAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATACAATTCAAGC
* * *
36509084 TCGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATACAATTCAAGC
* * *
36509113 AT-GCACACTTAGTGCCATATATTTCCAGC
1 -TCGCACACTTAGTGCCATACAATTCAAGC
* *** *
36509142 AT-GCACACTCAGTGCCATATTTTTCCAGC
1 -TCGCACACTTAGTGCCATACAATTCAAGC
36509171 AT-GCACACTTAGTGCCA
1 -TCGCACACTTAGTGCCA
36509188 ATCTCGTCAC
Statistics
Matches: 114, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
28 18 0.16
29 95 0.83
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATACAATTCAAGC
Found at i:36513927 original size:28 final size:29
Alignment explanation
Indices: 36513860--36513960 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
36513850 ATAGTGAATC
*
36513860 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
36513889 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
36513917 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
36513947 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36513961 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:36521737 original size:28 final size:29
Alignment explanation
Indices: 36521670--36521740 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
36521660 ATAGTGAATC
*
36521670 CGCACACTTAGTGCTATATACATTCAGCT
1 CGCACACTTAGTGCTATATACATTCAACT
36521699 CGCACACTTAGTGCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATACATTC-AACT
36521727 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36521741 CAATCTTGTC
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 20 0.50
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATACATTCAACT
Found at i:36524627 original size:15 final size:15
Alignment explanation
Indices: 36524607--36524637 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
36524597 ATTAATATCT
36524607 TTAACTAATAGAACA
1 TTAACTAATAGAACA
36524622 TTAACTAATAGAACA
1 TTAACTAATAGAACA
36524637 T
1 T
36524638 GCATTTTACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (15 bp):
TTAACTAATAGAACA
Found at i:36528722 original size:55 final size:52
Alignment explanation
Indices: 36528627--36528764 Score: 159
Period size: 54 Copynumber: 2.6 Consensus size: 52
36528617 AATTTACCAT
* * *
36528627 TGCCATGTCTTGACATGGTCTTACGTGGGACCTTTGCCTTAGAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACAT--GATCTTTACCTTAGAG-AACTCATCAA
* * *
36528682 TGCCATGTCTTGACATGGTCTTACATGATTTGCTTACCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGATCT--TTACCTTAGAGAACTCATCAA
* *
36528736 TGCCATGCCTTGGCATGGTCTTACATGAT
1 TGCCATGTCTTGACATGGTCTTACATGAT
36528765 ATCCTTATCT
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 3 0.04
54 36 0.49
55 34 0.47
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (52 bp):
TGCCATGTCTTGACATGGTCTTACATGATCTTTACCTTAGAGAACTCATCAA
Found at i:36528802 original size:47 final size:47
Alignment explanation
Indices: 36528749--36528911 Score: 267
Period size: 47 Copynumber: 3.5 Consensus size: 47
36528739 CATGCCTTGG
* *
36528749 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCGTGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGTCATGTTCCAAA
*
36528796 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGTCATGTTCCAAA
36528843 CATGGTCTTACATGGTATCC-TAGTCTTACCAAAT-TCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTA-TCTTACCAAATGT-CATGTTCCAAA
36528890 CATGGTCTTACATGGTATCCTT
1 CATGGTCTTACATGGTATCCTT
36528912 GTCCTATGTG
Statistics
Matches: 109, Mismatches: 4, Indels: 5
0.92 0.03 0.04
Matches are distributed among these distances:
46 2 0.02
47 106 0.97
48 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGTCATGTTCCAAA
Found at i:36528948 original size:28 final size:28
Alignment explanation
Indices: 36528892--36528948 Score: 64
Period size: 28 Copynumber: 2.0 Consensus size: 28
36528882 GTTCCAAACA
* *
36528892 TGGTCTTACATGGTATCCTTGTCCTATG
1 TGGTCTTACATGGTATCCTTATCCAATG
36528920 TGGTCTTACATGG-AGTCCTTAAT-CAATG
1 TGGTCTTACATGGTA-TCCTT-ATCCAATG
36528948 T
1 T
36528949 CAATGCCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 1 0.04
28 23 0.92
29 1 0.04
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (28 bp):
TGGTCTTACATGGTATCCTTATCCAATG
Found at i:36529812 original size:17 final size:17
Alignment explanation
Indices: 36529792--36529824 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
36529782 ACTTATGAAC
36529792 ATTATGTAT-TTTTACTG
1 ATTATGT-TGTTTTACTG
36529809 ATTATGTTGTTTTACT
1 ATTATGTTGTTTTACT
36529825 CGTTTTCACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.61
Consensus pattern (17 bp):
ATTATGTTGTTTTACTG
Found at i:36530916 original size:25 final size:26
Alignment explanation
Indices: 36530888--36530983 Score: 160
Period size: 25 Copynumber: 3.7 Consensus size: 26
36530878 TCTTTAATAC
*
36530888 CTGGGGCA-AAGCCCTTTTCGATAAA
1 CTGGGGCATAAGCCCTTTTCAATAAA
36530913 CTGGGGCA-AAGCCCTTTTCAATAAA
1 CTGGGGCATAAGCCCTTTTCAATAAA
36530938 CTGGGGCATAAGCCCTTTTTCAATAAA
1 CTGGGGCATAAGCCC-TTTTCAATAAA
36530965 CTGGGGCATAAGCCCTTTT
1 CTGGGGCATAAGCCCTTTT
36530984 GCACTTCCTC
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
25 32 0.47
26 10 0.15
27 26 0.38
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
CTGGGGCATAAGCCCTTTTCAATAAA
Found at i:36531058 original size:20 final size:20
Alignment explanation
Indices: 36531033--36531079 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
36531023 TTATGAATAC
36531033 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
36531052 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
36531073 ATCATGT
1 ATCATGT
36531080 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:36531182 original size:19 final size:19
Alignment explanation
Indices: 36531158--36531205 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
36531148 CAAAACAGTT
36531158 ATTTCATAATATAAAGGTA
1 ATTTCATAATATAAAGGTA
36531177 ATTTCATAATATAAAGGTA
1 ATTTCATAATATAAAGGTA
36531196 ATTTCATAAT
1 ATTTCATAAT
36531206 TTTACCAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (19 bp):
ATTTCATAATATAAAGGTA
Found at i:36535330 original size:27 final size:27
Alignment explanation
Indices: 36535276--36535332 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
36535266 TAAAATAGTC
* **
36535276 ATTTTACCCTACAAGAGTATTTTTGTA
1 ATTTTACACTACAAGAGTATTTCGGTA
*
36535303 ATTTTACACTACAAGGGTATTTCGGTA
1 ATTTTACACTACAAGAGTATTTCGGTA
36535330 ATT
1 ATT
36535333 ATAAAAACTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (27 bp):
ATTTTACACTACAAGAGTATTTCGGTA
Found at i:36535351 original size:54 final size:53
Alignment explanation
Indices: 36535300--36535434 Score: 130
Period size: 54 Copynumber: 2.5 Consensus size: 53
36535290 GAGTATTTTT
*
36535300 GTAATTTTACACTACAAGGGTATTTCGGTAATTAT-AAAAACTGGGGGTATTTCA
1 GTAATTTTACA-TACAAGGGTATTTCGGTAATT-TCAAAAACTGAGGGTATTTCA
** * * **
36535354 GTAATTTTACA-AGTCGGGGGTATTTTGGTAATTTCAAAAATTGAGGGTATTTGG
1 GTAATTTTACATA--CAAGGGTATTTCGGTAATTTCAAAAACTGAGGGTATTTCA
* *
36535408 GTAATTTCACAAATCAAGGGTATTTCG
1 GTAATTTTACATA-CAAGGGTATTTCG
36535435 ATAACTTTAC
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
52 1 0.02
53 1 0.02
54 63 0.95
55 1 0.02
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (53 bp):
GTAATTTTACATACAAGGGTATTTCGGTAATTTCAAAAACTGAGGGTATTTCA
Found at i:36535415 original size:27 final size:27
Alignment explanation
Indices: 36535316--36535434 Score: 107
Period size: 27 Copynumber: 4.4 Consensus size: 27
36535306 TTACACTACA
36535316 AGGGTATTTCGGTAATTAT-AAAAA-CTG
1 AGGGTATTTCGGTAATT-TCAAAAATC-G
* * * * *
36535343 GGGGTATTTCAGTAATTTTACAAGTCG
1 AGGGTATTTCGGTAATTTCAAAAATCG
* * *
36535370 GGGGTATTTTGGTAATTTCAAAAATTG
1 AGGGTATTTCGGTAATTTCAAAAATCG
* * *
36535397 AGGGTATTTGGGTAATTTCACAAATCA
1 AGGGTATTTCGGTAATTTCAAAAATCG
36535424 AGGGTATTTCG
1 AGGGTATTTCG
36535435 ATAACTTTAC
Statistics
Matches: 74, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
26 1 0.01
27 72 0.97
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.36
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTCAAAAATCG
Found at i:36542369 original size:21 final size:20
Alignment explanation
Indices: 36542341--36542379 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
36542331 CAAAACTTGT
36542341 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
36542361 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
36542380 CGAAGTACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:36550413 original size:27 final size:27
Alignment explanation
Indices: 36550329--36550482 Score: 173
Period size: 27 Copynumber: 5.5 Consensus size: 27
36550319 GACGAGAATG
* * *
36550329 GCACTAAGTGTGCAAGCTGGAAATATATG
1 GCACTAAGTGTGCGAGCT-G-ATTATATA
*
36550358 GCACTAAGTGTGCGAGCTCAAATTATATA
1 GCACTAAGTGTGCGAGCT--GATTATATA
* *
36550387 GCACTATGTGTGCGAGCTGATTTTATA
1 GCACTAAGTGTGCGAGCTGATTATATA
**
36550414 GCACTAAGTGTGCGAATTTGATTATATA
1 GCACTAAGTGTGCG-AGCTGATTATATA
* *
36550442 GCACTATGTGTGCGAGCTGATTTTATA
1 GCACTAAGTGTGCGAGCTGATTATATA
36550469 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36550483 GATTCACTAT
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
27 43 0.41
28 23 0.22
29 40 0.38
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTGATTATATA
Found at i:36550450 original size:55 final size:55
Alignment explanation
Indices: 36550379--36550482 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
36550369 GCGAGCTCAA
36550379 ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCGAATTTG
1 ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCGAATTTG
36550434 ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCG
1 ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCG
36550483 GATTCACTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (55 bp):
ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCGAATTTG
Found at i:36558242 original size:27 final size:27
Alignment explanation
Indices: 36558158--36558311 Score: 173
Period size: 27 Copynumber: 5.5 Consensus size: 27
36558148 GACGAGAATG
* * *
36558158 GCACTAAGTGTGCAAGCTGGAAATATATG
1 GCACTAAGTGTGCGAGCT-G-ATTATATA
*
36558187 GCACTAAGTGTGCGAGCTCAAATTATATA
1 GCACTAAGTGTGCGAGCT--GATTATATA
* *
36558216 GCACTATGTGTGCGAGCTGATTTTATA
1 GCACTAAGTGTGCGAGCTGATTATATA
**
36558243 GCACTAAGTGTGCGAATTTGATTATATA
1 GCACTAAGTGTGCG-AGCTGATTATATA
* *
36558271 GCACTATGTGTGCGAGCTGATTTTATA
1 GCACTAAGTGTGCGAGCTGATTATATA
36558298 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36558312 GATTCACTAT
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
27 43 0.41
28 23 0.22
29 40 0.38
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTGATTATATA
Found at i:36558279 original size:55 final size:55
Alignment explanation
Indices: 36558208--36558311 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
36558198 GCGAGCTCAA
36558208 ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCGAATTTG
1 ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCGAATTTG
36558263 ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCG
1 ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCG
36558312 GATTCACTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (55 bp):
ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCGAATTTG
Found at i:36560554 original size:56 final size:53
Alignment explanation
Indices: 36560461--36560572 Score: 129
Period size: 56 Copynumber: 2.1 Consensus size: 53
36560451 TATGAAAAAA
36560461 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
*** *
36560514 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAGGG
1 AAAGAAAA-AAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
36560570 AAA
1 AAA
36560573 AGGGGGAGGA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
53 8 0.16
54 5 0.10
55 2 0.04
56 32 0.64
57 3 0.06
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.28
Consensus pattern (53 bp):
AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:36561842 original size:39 final size:40
Alignment explanation
Indices: 36561761--36561926 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
36561751 AAATTGAATG
* * ** *
36561761 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGACT
* *
36561800 ATATCCGGG-TAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
* * *
36561839 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACT
* * *
36561879 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGACT
36561919 ATATCCGG
1 ATATCCGG
36561927 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 4 0.04
39 39 0.38
40 59 0.57
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
Found at i:36568173 original size:40 final size:40
Alignment explanation
Indices: 36568128--36568294 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
36568118 CGGAATATAA
36568128 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
36568168 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
36568208 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
36568248 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
36568287 CCGGATAT
1 CCGGATAT
36568295 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:36568278 original size:80 final size:79
Alignment explanation
Indices: 36568128--36568294 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
36568118 CGGAATATAA
* *
36568128 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
36568193 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
36568208 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
36568270 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
36568287 CCGGATAT
1 CCGGATAT
36568295 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:36569143 original size:17 final size:19
Alignment explanation
Indices: 36569120--36569165 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
36569110 AAGAAGCATG
36569120 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
36569138 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
36569156 AATCATGCTC
1 AATCATGCTC
36569166 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:36571000 original size:29 final size:29
Alignment explanation
Indices: 36570954--36571022 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
36570944 CACATGGTTT
*
36570954 GGCACATGGGCGTTTATGGCCATTTTTAG
1 GGCACATGGGCGTGTATGGCCATTTTTAG
*
36570983 GGCACACGGGCGTGTATGGCCATTTTTAG
1 GGCACATGGGCGTGTATGGCCATTTTTAG
36571012 GGCACATGGGC
1 GGCACATGGGC
36571023 TAGCCACATG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.17, C:0.20, G:0.35, T:0.28
Consensus pattern (29 bp):
GGCACATGGGCGTGTATGGCCATTTTTAG
Found at i:36573081 original size:28 final size:28
Alignment explanation
Indices: 36573049--36573113 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
36573039 ATTTACTAGA
*
36573049 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
36573077 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
36573105 ATACCCCTA
1 ATACCCCTA
36573114 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:36573275 original size:27 final size:27
Alignment explanation
Indices: 36573217--36573306 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 27
36573207 AGGAAGCGTC
36573217 CTGGTGG-CTATGCCACAAATTATCTGTT
1 CTGGTGGCCT-TGCCACAAA-TATCTGTT
*
36573245 CTGGTGGCCTTGCCACATATATCTGTT
1 CTGGTGGCCTTGCCACAAATATCTGTT
*
36573272 CTGGTGGCAC-TGCCGCAAAATATCTGTAT
1 CTGGTGGC-CTTGCCAC-AAATATCTGT-T
36573301 CTGGTG
1 CTGGTG
36573307 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
27 21 0.38
28 25 0.45
29 9 0.16
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCCTTGCCACAAATATCTGTT
Found at i:36573325 original size:55 final size:56
Alignment explanation
Indices: 36573217--36573331 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 56
36573207 AGGAAGCGTC
* *
36573217 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCTTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCTTGCCACATATATCTGTAT
* * *
36573272 CTGGTGGC-ACTGCCGCAAAATATCTGTATCTGGTGA-CTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCT-TGCCACATATATCTGTAT
36573328 CTGG
1 CTGG
36573332 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
54 1 0.02
55 31 0.61
56 19 0.37
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCTTGCCACATATATCTGTAT
Found at i:36579756 original size:28 final size:28
Alignment explanation
Indices: 36579724--36579788 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
36579714 ATTTACTAGA
*
36579724 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
36579752 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
36579780 ATACCCCTA
1 ATACCCCTA
36579789 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:36579952 original size:27 final size:27
Alignment explanation
Indices: 36579894--36579983 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
36579884 AGGAAGCGTC
*
36579894 CTGGTGGCTA-TGCCACAAATTATCTGCT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
36579922 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
36579949 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
36579978 CTGGTG
1 CTGGTG
36579984 ACTCTATCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.41
28 25 0.46
29 7 0.13
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:36579994 original size:29 final size:28
Alignment explanation
Indices: 36579906--36579994 Score: 72
Period size: 27 Copynumber: 3.2 Consensus size: 28
36579896 GGTGGCTATG
* * * * *
36579906 CCACAAATTATCTGCTCTGGTGGCCCTG
1 CCACAAAATATCTGTTCTGGTGACACTA
* * *
36579934 CCAC-ATATATCTGTTCTGGTGGCACTG
1 CCACAAAATATCTGTTCTGGTGACACTA
*
36579961 CCACAAAATATCTGTATCTGGTGACTCTA
1 CCACAAAATATCTGT-TCTGGTGACACTA
*
36579990 TCACA
1 CCACA
36579995 TTTTCTGTAT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
27 23 0.46
28 13 0.26
29 14 0.28
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (28 bp):
CCACAAAATATCTGTTCTGGTGACACTA
Found at i:36580002 original size:55 final size:56
Alignment explanation
Indices: 36579894--36580008 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
36579884 AGGAAGCGTC
* * * *
36579894 CTGGTGGCTATGCCACAAATTATCTGCTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGATCTGGTGACCCTACCACATATATCTGTAT
* * *
36579949 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTATCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTG-ATCTGGTGACCCTACCACATATATCTGTAT
36580005 CTGG
1 CTGG
36580009 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGATCTGGTGACCCTACCACATATATCTGTAT
Found at i:36582412 original size:71 final size:71
Alignment explanation
Indices: 36582329--36582492 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
36582319 CGATTTGTCT
*
36582329 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
36582394 CTTTCA
66 CTTTCA
*
36582400 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
36582465 CTTTCA
66 CTTTCA
36582471 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36582493 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
CTTTCA
Found at i:36582530 original size:71 final size:70
Alignment explanation
Indices: 36582329--36582526 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
36582319 CGATTTGTCT
* * *
36582329 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGTGACCTAGCTACATTTAC
36582394 CTTTCA
65 CTTTCA
* * * * *
36582400 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGTGACCTAGCTACATTTAC
36582465 CTTTCA
65 CTTTCA
*
36582471 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGTGACCTAGCTAC
36582527 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 94 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGTGACCTAGCTACATTTACC
TTTCA
Found at i:36584162 original size:20 final size:20
Alignment explanation
Indices: 36584126--36584163 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36584116 AAATTTATGT
*
36584126 TAAGTAAATGGACTGGTAAG
1 TAAGTAAATGGAATGGTAAG
36584146 TAAGTAAA-GGAAATGGTA
1 TAAGTAAATGG-AATGGTA
36584164 CACAGTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.45, C:0.03, G:0.29, T:0.24
Consensus pattern (20 bp):
TAAGTAAATGGAATGGTAAG
Found at i:36585338 original size:20 final size:20
Alignment explanation
Indices: 36585313--36585353 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
36585303 CTGCAATTTA
*
36585313 AAAAATT-TCATATTTTTCTG
1 AAAAATTCT-ATATGTTTCTG
36585333 AAAAATTCTATATGTTTCTG
1 AAAAATTCTATATGTTTCTG
36585353 A
1 A
36585354 CTTAGTCCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (20 bp):
AAAAATTCTATATGTTTCTG
Found at i:36587282 original size:48 final size:48
Alignment explanation
Indices: 36587206--36587533 Score: 317
Period size: 48 Copynumber: 6.8 Consensus size: 48
36587196 GGTGACATGT
** *
36587206 GAGCCAGTGTAAGACCATGTTTGAAACATGGCATCGACAATGTAATGA
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAATGTAATGA
*
36587254 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTAATGA
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAATGTAATGA
* * * * * * * *
36587302 GAGTCAGTGCAAGGCCATGTCTAGGACATGGTATCGGCATTG-ATATGT
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAATGTA-ATGA
* * *
36587350 GCGCTAGTGTAAGACCAT-TTCTGGGACATGGCATCAGCCACAT-T-ATGA
1 GAGCCAGTGTAAGACCATGTT-TGGGACATGGCATC-GGCA-ATGTAATGA
* ** *
36587398 GAGCCAGTGTAAGACCATGTATGGGACATGGCATCTACATTG-AGATGA
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAATGTA-ATGA
* * * * * *
36587446 GAGCTAGAGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAAATGT
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAAT-GTAATGA
* *
36587494 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCAA
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAA
36587534 ATTCACCCTC
Statistics
Matches: 229, Mismatches: 39, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
46 1 0.00
47 5 0.02
48 217 0.95
49 5 0.02
50 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAATGTAATGA
Found at i:36587379 original size:96 final size:96
Alignment explanation
Indices: 36587206--36587527 Score: 357
Period size: 96 Copynumber: 3.4 Consensus size: 96
36587196 GGTGACATGT
* ** * *
36587206 GAGCCAGTGTAAGACCATGTTTGAAACATGGCATCGACAATGTA-ATGAGAGCCAGTGTAAGACC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTG-AGATGAGAGCTAGTGTAAGACC
*
36587270 ATGTT-TGGAACATGGCATCGGCAATGTAATGA
65 AT-TTCTGGGACATGGCATCGGCAATGTAATGA
* * * * * * * * *
36587302 GAGTCAGTGCAAGGCCATGTCTAGGACATGGTATCGGCATTGATATGTGCGCTAGTGTAAGACCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATGAGAGCTAGTGTAAGACCA
*
36587367 TTTCTGGGACATGGCATCAGCCACAT-T-ATGA
66 TTTCTGGGACATGGCATC-GGCA-ATGTAATGA
* * *
36587398 GAGCCAGTGTAAGACCATGTATGGGACATGGCATCTACATTGAGATGAGAGCTAGAGTAAGACCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATGAGAGCTAGTGTAAGACCA
* * * *
36587463 TGTCTGGGACATGGCATCGGC-CTCGAAATGT
66 TTTCTGGGACATGGCATCGGCAAT-GTAATGA
36587494 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
36587528 TGGCAAATTC
Statistics
Matches: 186, Mismatches: 33, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
93 1 0.01
95 5 0.03
96 174 0.94
97 4 0.02
98 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (96 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATGAGAGCTAGTGTAAGACCA
TTTCTGGGACATGGCATCGGCAATGTAATGA
Found at i:36587464 original size:144 final size:144
Alignment explanation
Indices: 36587202--36587527 Score: 401
Period size: 144 Copynumber: 2.3 Consensus size: 144
36587192 TTTGGGTGAC
**
36587202 ATGTGAGCCAGTGTAAGACCATGTT-TGAAACATGGCATCGACAATGTAATGAGAGCCAGTGTAA
1 ATGTGAGCCAGTGTAAGACCAT-TTCTGGGACATGGCATCGACAATGTAATGAGAGCCAGTGTAA
* * * *
36587266 GACCATGTTTGGAACATGGCATCGGCAATGTAATGAGAGTCAGTGCAAGGCCATGTCTAGGACAT
65 GACCATGTATGGAACATGGCATCGACAATGTAATGAGAGTCAGAGCAAGACCATGTCTAGGACAT
* * *
36587331 GGTATCGGCATTGAT
130 GGCATCGGCATCGAA
* * *
36587346 ATGTGCGCTAGTGTAAGACCATTTCTGGGACATGGCATCAGCCACAT-T-ATGAGAGCCAGTGTA
1 ATGTGAGCCAGTGTAAGACCATTTCTGGGACATGGCATC-GACA-ATGTAATGAGAGCCAGTGTA
* * * * *
36587409 AGACCATGTATGGGACATGGCATCTACATTG-AGATGAGAG-CTAGAGTAAGACCATGTCTGGGA
64 AGACCATGTATGGAACATGGCATCGACAATGTA-ATGAGAGTC-AGAGCAAGACCATGTCTAGGA
*
36587472 CATGGCATCGGCCTCGAA
127 CATGGCATCGGCATCGAA
*
36587490 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 ATGTGAGCCAGTGTAAGACCATTTCTGGGACATGGCAT
36587528 TGGCAAATTC
Statistics
Matches: 156, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
143 4 0.03
144 146 0.94
145 4 0.03
146 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (144 bp):
ATGTGAGCCAGTGTAAGACCATTTCTGGGACATGGCATCGACAATGTAATGAGAGCCAGTGTAAG
ACCATGTATGGAACATGGCATCGACAATGTAATGAGAGTCAGAGCAAGACCATGTCTAGGACATG
GCATCGGCATCGAA
Found at i:36590656 original size:48 final size:48
Alignment explanation
Indices: 36590600--36590732 Score: 171
Period size: 48 Copynumber: 2.8 Consensus size: 48
36590590 CTCAATCGAT
* *
36590600 AAGTACCTATACCATGGCCCGAAACCAAATCAAGGTAACTTATCCT-CG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCA-CCTCCG
* ** *
36590648 GAGTACCTATAAAATGGCTC-ATAGCCAAATCAAGGTAACTCACCTCCG
1 AAGTACCTATACCATGGCCCGA-AGCCAAATCAAGGTAACTCACCTCCG
*
36590696 AAATACCTATACCATGGCCCGAAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTA
36590733 TAATTCACAC
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
47 4 0.06
48 66 0.93
49 1 0.01
ACGTcount: A:0.37, C:0.28, G:0.16, T:0.20
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCACCTCCG
Found at i:36595218 original size:40 final size:39
Alignment explanation
Indices: 36595130--36595224 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 39
36595120 TAAATCAGTA
*
36595130 TCGCACACTTAGTGCCTTCTATAGCCGAAGCTATGCCAAC
1 TCGCACACTTAGTG-CTTCTATAGCCGAAGCTATGCAAAC
* * * **
36595170 TCGTACACTTAGTGCTATTTATAGCCGATGCTATATTAAAC
1 TCGCACACTTAGTGCT-TCTATAGCCGAAGCTAT-GCAAAC
36595211 -CGCACACTTAGTGC
1 TCGCACACTTAGTGC
36595225 CAATCATAGT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
39 2 0.04
40 41 0.89
41 3 0.07
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (39 bp):
TCGCACACTTAGTGCTTCTATAGCCGAAGCTATGCAAAC
Found at i:36599550 original size:27 final size:26
Alignment explanation
Indices: 36599477--36599592 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 26
36599467 TGGAGGAAGC
*
36599477 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
36599504 ATTTCTGGTGGCTAC-GCCACAAATATCT
1 -GTTCTGGTGGCT-CTGCCAC-AATATCT
*
36599532 GTTCTGGTGGCTCTACCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * * *
36599558 GTGACTGGTGACTTTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
36599585 GTTCTGGT
1 GTTCTGGT
36599593 AGCCATGCTG
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
26 15 0.20
27 36 0.48
28 24 0.32
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:36604789 original size:48 final size:48
Alignment explanation
Indices: 36604526--36604786 Score: 459
Period size: 48 Copynumber: 5.4 Consensus size: 48
36604516 TATATATGTG
36604526 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
36604574 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
36604622 TGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
36604670 TGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
36604718 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTGTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
36604766 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
36604787 GTGATTCGGC
Statistics
Matches: 203, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 203 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:36605019 original size:37 final size:37
Alignment explanation
Indices: 36604959--36605061 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
36604949 GGAAATATAT
* *
36604959 TCCGTGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
36604996 TCCGGGTAAGACCCGATGTCTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
36605033 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
36605062 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36606395 original size:40 final size:40
Alignment explanation
Indices: 36606347--36606692 Score: 490
Period size: 40 Copynumber: 8.8 Consensus size: 40
36606337 AGTTATATAG
36606347 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* *
36606387 CTGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
*
36606427 CTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
*
36606467 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
36606507 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * * *
36606547 CCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * *
36606587 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * * *
36606627 CC-GG----GTCCCGAAGTGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
*
36606662 CCGGGCTAA-ACCTCGAAG-GCATTCGTGCTGG
1 CCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
36606693 AATTATGAGG
Statistics
Matches: 286, Mismatches: 14, Indels: 13
0.91 0.04 0.04
Matches are distributed among these distances:
35 32 0.11
36 2 0.01
39 16 0.06
40 236 0.83
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
Found at i:36610226 original size:48 final size:48
Alignment explanation
Indices: 36610164--36610617 Score: 777
Period size: 48 Copynumber: 9.5 Consensus size: 48
36610154 TATATATGTG
*
36610164 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
36610212 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
36610260 TGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
36610308 TGAGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
36610356 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
36610404 TGTGGTAAAGCCGAATGGCTAGTG-GAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
36610451 CGTGGT-AAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
36610498 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* **
36610546 TGTGGTAAAGCCGAATGGCTAATGCAAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
36610594 TGTGGTAAAGCCAAATGGCTAGTG
1 TGTGGTAAAGCCGAATGGCTAGTG
36610618 ATTCGGCTAG
Statistics
Matches: 389, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 17 0.04
47 55 0.14
48 317 0.81
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:36610528 original size:190 final size:192
Alignment explanation
Indices: 36610164--36610617 Score: 786
Period size: 190 Copynumber: 2.4 Consensus size: 192
36610154 TATATATGTG
36610164 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
* *
36610229 GCTAATGTGAAATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGT
66 GCTAGTGTGAAATATATATGAGATATGTATACGCGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
36610294 ATGAGATATGTATATGAGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
131 ATGAGATATGTATACGAGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
36610356 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
* * * *
36610421 GCTAGTG-GAACTATGTATGAGATATGTATACGTGGT-AAGCCGAATGGCTAGTGTGAAATATGT
66 GCTAGTGTGAAATATATATGAGATATGTATACGCGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
36610484 ATGAGATATGTATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
131 ATGAGATATGTATACGAGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
** *
36610546 TGTGGTAAAGCCGAATGGCTAATGCAAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
36610611 GCTAGTG
66 GCTAGTG
36610618 ATTCGGCTAG
Statistics
Matches: 249, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
190 154 0.62
191 25 0.10
192 70 0.28
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (192 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
GCTAGTGTGAAATATATATGAGATATGTATACGCGGTAAAGCCGAATGGCTAATGTGAAATATGT
ATGAGATATGTATACGAGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:36610837 original size:37 final size:37
Alignment explanation
Indices: 36610787--36610889 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
36610777 GGAAATATAT
36610787 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
36610824 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
36610861 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
36610890 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36611332 original size:28 final size:28
Alignment explanation
Indices: 36611299--36611354 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
36611289 TCTGTTGACA
36611299 CTGCTTAAAACTTACTAAGCATTGAAAT
1 CTGCTTAAAACTTACTAAGCATTGAAAT
36611327 CTGCTTAAAACTTACTAAGCATTGAAAT
1 CTGCTTAAAACTTACTAAGCATTGAAAT
36611355 GCTTACTTCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (28 bp):
CTGCTTAAAACTTACTAAGCATTGAAAT
Found at i:36613002 original size:28 final size:28
Alignment explanation
Indices: 36612958--36613047 Score: 123
Period size: 28 Copynumber: 3.3 Consensus size: 28
36612948 GGAGGAAGCG
* *
36612958 TTCTAGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTACGCCACAAATATCTGT
36612986 TTCTGGTGGCTACGCCACAAATATCTG-
1 TTCTGGTGGCTACGCCACAAATATCTGT
36613013 TTCTGGTGGCT-CTGCCAC-AATATCTGT
1 TTCTGGTGGCTAC-GCCACAAATATCTGT
*
36613040 ATCTGGTG
1 TTCTGGTG
36613048 ACTCTGTTAC
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
26 9 0.16
27 23 0.40
28 25 0.44
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.34
Consensus pattern (28 bp):
TTCTGGTGGCTACGCCACAAATATCTGT
Found at i:36613029 original size:27 final size:26
Alignment explanation
Indices: 36612957--36613071 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 26
36612947 TGGAGGAAGC
* *
36612957 GTTCTAGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
36612984 GTTTCTGGTGGCTAC-GCCACAAATATCT
1 G-TTCTGGTGGCT-CTGCCAC-AATATCT
36613012 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* **
36613038 GTATCTGGTGACTCTGTTACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
36613065 GTTCTGG
1 GTTCTGG
36613072 CAGCCATGCT
Statistics
Matches: 79, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
26 15 0.19
27 40 0.51
28 24 0.30
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:36616866 original size:27 final size:28
Alignment explanation
Indices: 36616836--36616924 Score: 94
Period size: 27 Copynumber: 3.3 Consensus size: 28
36616826 TTTAGTTTAC
*
36616836 TAAAATTACCAAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
36616863 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
36616890 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
36616917 TAAAATTA
1 TAAAATTA
36616925 ATAAAGTACC
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.08
27 47 0.92
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:36616961 original size:27 final size:27
Alignment explanation
Indices: 36616931--36617338 Score: 374
Period size: 27 Copynumber: 14.8 Consensus size: 27
36616921 ATTAATAAAG
*
36616931 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCCTGATTTACAGAATTACCGTTT
* *
36616958 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACAGAATTACCGTTT
* *
36616985 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACAGAATTACCGTTT
* *
36617012 TA-CCCTCGACTTATAGAATTACCGTTTTACCATTT
1 TACCCCT-GATTTACAGAATTACCG--------TTT
* *
36617047 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACAGAATTACCGTTT
* *
36617074 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACAGAATTACCGTTT
** *
36617101 TACCCAGGACTTACAGAATTACCGTTT
1 TACCCCTGATTTACAGAATTACCGTTT
* *
36617128 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACAGAATTACCGTTT
* * *
36617155 TACCCCTAATTTACATAATTATCGTTT
1 TACCCCTGATTTACAGAATTACCGTTT
*
36617182 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACAGAATTACCGTTT
* *
36617209 TA-CCCTCGATTTACTGAATTACTGTTT
1 TACCCCT-GATTTACAGAATTACCGTTT
* * **
36617236 TACCCTTGATTTATAGAATTACTATTT
1 TACCCCTGATTTACAGAATTACCGTTT
* * **
36617263 TACCCTTGATTTATAGAATTACTATTT
1 TACCCCTGATTTACAGAATTACCGTTT
* **
36617290 TACCCTTGATTTACAGAATTACTATTT
1 TACCCCTGATTTACAGAATTACCGTTT
*
36617317 TA-CCCTCGATTTACAAAATTAC
1 TACCCCT-GATTTACAGAATTAC
36617339 TAAAATACCC
Statistics
Matches: 328, Mismatches: 40, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
26 11 0.03
27 292 0.89
28 3 0.01
35 18 0.05
36 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCCTGATTTACAGAATTACCGTTT
Found at i:36617033 original size:81 final size:81
Alignment explanation
Indices: 36616931--36617337 Score: 471
Period size: 81 Copynumber: 4.9 Consensus size: 81
36616921 ATTAATAAAG
* *
36616931 TACCCCCGATTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
36616996 TACATAATTATCGTTT
66 TACATAATTATCGTTT
*
36617012 TACCCTCGACTTATAGAATTACCGTTTTACCATTTTACCCCTAATTTACATAATTACCGTTTTAC
1 TACCCTCGACTTACAGAATTACCG--------TTTTACCCCTAATTTACATAATTACCGTTTTAC
36617077 CCCTGATTTACATAATTATCGTTT
58 CCCTGATTTACATAATTATCGTTT
** *
36617101 TACCCAGGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTAATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
36617166 TACATAATTATCGTTT
66 TACATAATTATCGTTT
* * *
36617182 TACCCTCGACTTACAGAATTACCGTTTTA-CCCTCGATTTAC-TGAATTACTGTTTTACCCTTGA
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCT-AATTTACAT-AATTACCGTTTTACCCCTGA
* * *
36617245 TTTATAGAATTA-CTATTT
64 TTTACATAATTATC-GTTT
* * * ** * * * **
36617263 TACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTTTA-CCCTCGAT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCT-GAT
*
36617327 TTACAAAATTA
65 TTACATAATTA
36617338 CTAAAATACC
Statistics
Matches: 285, Mismatches: 27, Indels: 28
0.84 0.08 0.08
Matches are distributed among these distances:
80 9 0.03
81 195 0.68
82 3 0.01
89 78 0.27
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
TACATAATTATCGTTT
Found at i:36617347 original size:27 final size:27
Alignment explanation
Indices: 36617236--36617484 Score: 137
Period size: 27 Copynumber: 9.1 Consensus size: 27
36617226 ATTACTGTTT
* * ***
36617236 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
* * ***
36617263 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
* ***
36617290 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
36617317 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *** *
36617344 TACCCTTGGTTTGTGAAATTACCGAAAA
1 TACCCTTGATTTACAAAATTA-CTAAAA
** ** *
36617372 -ACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* * *
36617398 TACCCCTAATTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
36617425 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
36617454 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
36617481 TACC
1 TACC
36617485 TTTGGTTTGT
Statistics
Matches: 185, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.03
27 148 0.80
28 12 0.06
29 19 0.10
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.36
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:36617489 original size:27 final size:27
Alignment explanation
Indices: 36617441--36617492 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
36617431 TGACTTTCTA
36617441 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
36617468 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
36617493 GTTGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:36617585 original size:27 final size:27
Alignment explanation
Indices: 36617555--36617610 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
36617545 AGGTAACAAC
*
36617555 ACCGTAA-AGCCCCTGTAGGGTAAAGTG
1 ACCGTAATA-CCCCTGTAGGGTAAAATG
*
36617582 ACCGTAATACCCCTGTATGGTAAAATG
1 ACCGTAATACCCCTGTAGGGTAAAATG
36617609 AC
1 AC
36617611 GAATATGCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
ACCGTAATACCCCTGTAGGGTAAAATG
Found at i:36618797 original size:25 final size:25
Alignment explanation
Indices: 36618768--36618815 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36618758 TTATAATATG
* * *
36618768 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
36618793 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
36618816 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:36618884 original size:20 final size:20
Alignment explanation
Indices: 36618859--36618917 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
36618849 TAAATATGGT
36618859 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
36618879 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
36618899 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
36618918 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:36618995 original size:24 final size:24
Alignment explanation
Indices: 36618968--36619086 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
36618958 GAGGAAGTGA
*
36618968 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
36618992 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
36619015 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
36619039 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36619063 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36619087 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:36619037 original size:47 final size:48
Alignment explanation
Indices: 36618968--36619086 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
36618958 GAGGAAGTGA
36618968 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
36619015 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
36619063 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36619087 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:36619313 original size:31 final size:31
Alignment explanation
Indices: 36619278--36619372 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
36619268 CGTTTACAGT
36619278 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36619309 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
36619340 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36619371 AA
1 AA
36619373 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36621794 original size:27 final size:28
Alignment explanation
Indices: 36621764--36621853 Score: 105
Period size: 27 Copynumber: 3.3 Consensus size: 28
36621754 TTTAGTTTAC
36621764 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
36621791 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
36621818 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
36621845 TAAAATTAC
1 TAAAATTAC
36621854 TAAAGTACCC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.08
27 49 0.92
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:36621862 original size:27 final size:26
Alignment explanation
Indices: 36621788--36621863 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
36621778 TACCCTTAGT
* *
36621788 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACT-AAATACCCTCGAC
* * *
36621815 TTGTAAATTTACCGAAATACCTTCGAC
1 TTGTAAAATTA-CTAAATACCCTCGAC
36621842 TTGTAAAATTACTAAAGTACCC
1 TTGTAAAATTACTAAA-TACCC
36621864 GATTTAAGAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 4 0.10
27 34 0.87
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACTAAATACCCTCGAC
Found at i:36621923 original size:27 final size:27
Alignment explanation
Indices: 36621864--36622168 Score: 345
Period size: 27 Copynumber: 11.3 Consensus size: 27
36621854 TAAAGTACCC
*
36621864 GATTTA-AGAATTACCGTTTTA-CCCT
1 GATTTACATAATTACCGTTTTACCCCT
*
36621889 AATTTACATAATTACCGTTTTACCCCT
1 GATTTACATAATTACCGTTTTACCCCT
*
36621916 GATTTACATAATTATCGTTTTA-CCCT
1 GATTTACATAATTACCGTTTTACCCCT
* *
36621942 CGACTTACAGAATTACCGTTTTACCCCT
1 -GATTTACATAATTACCGTTTTACCCCT
*
36621970 AATTTACATAATTACCGTTTTACCCCT
1 GATTTACATAATTACCGTTTTACCCCT
*
36621997 GATTTACATAATTATCGTTTTACCCTCCT
1 GATTTACATAATTACCGTTTTA-CC-CCT
* *
36622026 CGACTTACAGAATTACCGTTTTA-CCCT
1 -GATTTACATAATTACCGTTTTACCCCT
*
36622053 AATTTACATAATTACCGTTTTACCCCT
1 GATTTACATAATTACCGTTTTACCCCT
* *
36622080 AATTTACATAATTATCGTTTTA-CCCT
1 GATTTACATAATTACCGTTTTACCCCT
* *
36622106 CGACTTACAGAATTACCGTTTTA-CCCT
1 -GATTTACATAATTACCGTTTTACCCCT
* *
36622133 CGATTTAC-TGAATTACTGTTTTACCCTT
1 -GATTTACAT-AATTACCGTTTTACCCCT
36622161 GAATTTAC
1 G-ATTTAC
36622169 TGTTTTACCC
Statistics
Matches: 241, Mismatches: 27, Indels: 21
0.83 0.09 0.07
Matches are distributed among these distances:
25 5 0.02
26 41 0.17
27 157 0.65
28 16 0.07
29 3 0.01
30 19 0.08
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (27 bp):
GATTTACATAATTACCGTTTTACCCCT
Found at i:36622065 original size:164 final size:165
Alignment explanation
Indices: 36621870--36622168 Score: 523
Period size: 164 Copynumber: 1.8 Consensus size: 165
36621860 ACCCGATTTA
*
36621870 AGAATTACCGTTTTACCCTAATTTACATAATTACCGTTTTACCCCTGATTTACATAATTATCGTT
1 AGAATTACCGTTTTACCCTAATTTACATAATTACCGTTTTACCCCTAATTTACATAATTATCGTT
36621935 TTACCCTCGACTTACAGAATTACCGTTTTACCC-CTAATTTACAT-AATTACCGTTTTACCCCTG
66 TTACCCTCGACTTACAGAATTACCGTTTTACCCTC-AATTTAC-TGAATTACCGTTTTACCCCTG
36621998 -ATTTACATAATTATCGTTTTACCCTCCTCGACTTAC
129 AATTTACATAATTATCGTTTTACCCTCCTCGACTTAC
36622034 AGAATTACCGTTTTACCCTAATTTACATAATTACCGTTTTACCCCTAATTTACATAATTATCGTT
1 AGAATTACCGTTTTACCCTAATTTACATAATTACCGTTTTACCCCTAATTTACATAATTATCGTT
* * *
36622099 TTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACTGAATTACTGTTTTACCCTTGAA
66 TTACCCTCGACTTACAGAATTACCGTTTTACCCTCAATTTACTGAATTACCGTTTTACCCCTGAA
36622164 TTTAC
131 TTTAC
36622169 TGTTTTACCC
Statistics
Matches: 128, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
163 1 0.01
164 120 0.94
165 7 0.05
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (165 bp):
AGAATTACCGTTTTACCCTAATTTACATAATTACCGTTTTACCCCTAATTTACATAATTATCGTT
TTACCCTCGACTTACAGAATTACCGTTTTACCCTCAATTTACTGAATTACCGTTTTACCCCTGAA
TTTACATAATTATCGTTTTACCCTCCTCGACTTAC
Found at i:36622163 original size:19 final size:20
Alignment explanation
Indices: 36622141--36622179 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
36622131 CTCGATTTAC
36622141 TGAA-TTACTGTTTTACCCT
1 TGAATTTACTGTTTTACCCT
36622160 TGAATTTACTGTTTTACCCT
1 TGAATTTACTGTTTTACCCT
36622180 CGATTTACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.49
Consensus pattern (20 bp):
TGAATTTACTGTTTTACCCT
Found at i:36622187 original size:19 final size:20
Alignment explanation
Indices: 36622145--36622187 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
36622135 ATTTACTGAA
*
36622145 TTACTGTTTTACCCTTGAAT
1 TTACTGTTTTACCCTCGAAT
36622165 TTACTGTTTTACCCTCG-AT
1 TTACTGTTTTACCCTCGAAT
36622184 TTAC
1 TTAC
36622188 AAAATTACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.19, C:0.23, G:0.09, T:0.49
Consensus pattern (20 bp):
TTACTGTTTTACCCTCGAAT
Found at i:36622204 original size:27 final size:27
Alignment explanation
Indices: 36622174--36622341 Score: 85
Period size: 27 Copynumber: 6.1 Consensus size: 27
36622164 TTTACTGTTT
36622174 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * *** *
36622201 TACCCTTGGTTTGTGAAATTACCGAAAA
1 TACCCTCGATTTACAAAATTA-CTAAAA
* ** *
36622229 -ACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
36622255 TACCC-CTAATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
36622282 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
36622311 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
36622338 TACC
1 TACC
36622342 TTTGGTTTGT
Statistics
Matches: 110, Mismatches: 20, Indels: 22
0.72 0.13 0.14
Matches are distributed among these distances:
26 7 0.06
27 72 0.65
28 12 0.11
29 19 0.17
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:36622205 original size:47 final size:47
Alignment explanation
Indices: 36622118--36622208 Score: 119
Period size: 47 Copynumber: 1.9 Consensus size: 47
36622108 ACTTACAGAA
** ****
36622118 TTACCGTTTTACCCTCGATTTACTGAATTACTGTTTTACCCTTGAAT
1 TTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGAAT
*
36622165 TTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTG
1 TTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTG
36622209 GTTTGTGAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 37 1.00
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (47 bp):
TTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGAAT
Found at i:36622346 original size:27 final size:27
Alignment explanation
Indices: 36622298--36622349 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
36622288 TGACTTTCTA
36622298 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
36622325 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
36622350 GTTGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:36622475 original size:26 final size:26
Alignment explanation
Indices: 36622419--36622469 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
36622409 CACCGTAAAG
* * *
36622419 CCCCTGTAGGGTAAAGTGCCGTAATA
1 CCCCTGTATGGTAAAATGACGTAATA
36622445 CCCCTGTATGGTAAAATGACG-AATA
1 CCCCTGTATGGTAAAATGACGTAATA
36622470 TGCCCTTATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CCCCTGTATGGTAAAATGACGTAATA
Found at i:36623649 original size:25 final size:25
Alignment explanation
Indices: 36623621--36623668 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36623611 TTATAATATG
* * *
36623621 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
36623646 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
36623669 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:36623737 original size:20 final size:20
Alignment explanation
Indices: 36623712--36623770 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
36623702 TAAATATGGT
36623712 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
36623732 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
36623752 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
36623771 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:36623848 original size:24 final size:24
Alignment explanation
Indices: 36623821--36623939 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
36623811 GAGGAAGTGA
*
36623821 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
36623845 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
36623868 AAAAGGGCTTTATGCCCCAGTTATT
1 AAAAGGGC-TTATGCCCCAGTTATT
* *
36623893 GAAAGGGCTTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36623916 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36623940 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
23 24 0.29
24 44 0.52
25 16 0.19
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:36624166 original size:31 final size:31
Alignment explanation
Indices: 36624131--36624223 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
36624121 CGTTTACAGT
36624131 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36624162 AAAGGCTTCGG-CCAGT-ATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
36624191 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36624222 AA
1 AA
36624224 TATGAAAAGG
Statistics
Matches: 59, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
29 24 0.41
30 10 0.17
31 25 0.42
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36627924 original size:17 final size:18
Alignment explanation
Indices: 36627882--36627930 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
36627872 AGTTGAAAAG
36627882 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
36627901 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
36627918 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
36627931 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:36628819 original size:40 final size:40
Alignment explanation
Indices: 36628753--36628919 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
36628743 AAATTGAATG
* * *
36628753 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
36628792 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
36628832 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
36628872 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
36628912 ATATCCGG
1 ATATCCGG
36628920 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:36631122 original size:43 final size:42
Alignment explanation
Indices: 36631029--36631122 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 42
36631019 AGATATCGAG
**
36631029 ATATGATTACATGTAAGACCATGTCTGGGACATTAGCATTGT
1 ATATGATTACATGTAAGACCATGTCTGGGACATTAGCACCGT
* *
36631071 ATTGTGATTACATGTAAGACCATGTCTGGGACATTGGCACCGTT
1 A-TATGATTACATGTAAGACCATGTCTGGGACATTAGCACCG-T
36631115 ATATGATT
1 ATATGATT
36631123 TCGTGGGAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 1 0.02
43 42 0.93
44 2 0.04
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (42 bp):
ATATGATTACATGTAAGACCATGTCTGGGACATTAGCACCGT
Found at i:36632157 original size:55 final size:56
Alignment explanation
Indices: 36632092--36632206 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
36632082 AGCATGGCTG
* *
36632092 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
36632148 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
36632203 CCAG
1 CCAG
36632207 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:36632169 original size:27 final size:27
Alignment explanation
Indices: 36632117--36632206 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
36632107 GTGACAGAGT
36632117 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
36632146 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
36632173 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
36632201 CACCAG
1 CACCAG
36632207 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:36632359 original size:28 final size:28
Alignment explanation
Indices: 36632312--36632376 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
36632302 AAATTAACTC
*
36632312 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
36632340 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
36632368 TAGGGGTAT
1 TAGGGGTAT
36632377 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:36634455 original size:29 final size:29
Alignment explanation
Indices: 36634413--36634481 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
36634403 CGTGTGGCTA
*
36634413 GCCCATGTGCCCTAAAAATGGCCATACAC
1 GCCCATGTGCCCTAAAAATGGCCATAAAC
*
36634442 GCCCGTGTGCCCTAAAAATGGCCATAAAC
1 GCCCATGTGCCCTAAAAATGGCCATAAAC
36634471 GCCCATGTGCC
1 GCCCATGTGCC
36634482 AAACCATGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.28, C:0.35, G:0.20, T:0.17
Consensus pattern (29 bp):
GCCCATGTGCCCTAAAAATGGCCATAAAC
Found at i:36636356 original size:43 final size:43
Alignment explanation
Indices: 36636205--36636356 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 43
36636195 TATCGAGATA
* *
36636205 TGATTACATGTAAGACCATGTCTGGGACATTAGCAT-TGTATTG
1 TGATTACATGTAAGACCATATCTGGGACATTAGCATCGGTA-TG
* * * * *
36636248 TGATTACATGTAAGACCATGTCTGGGACATTGGCACCGTTATA
1 TGATTACATGTAAGACCATATCTGGGACATTAGCATCGGTATG
* * ** * *
36636291 TGATTTCGTGGGAGACGC-TATCTGGGACAGTCGCATCGGTATG
1 TGATTACATGTAAGAC-CATATCTGGGACATTAGCATCGGTATG
*
36636334 TGATAACATGTAAGACCATATCT
1 TGATTACATGTAAGACCATATCT
36636357 AAGATATGGC
Statistics
Matches: 86, Mismatches: 20, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
42 1 0.01
43 82 0.95
44 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
TGATTACATGTAAGACCATATCTGGGACATTAGCATCGGTATG
Found at i:36638139 original size:93 final size:93
Alignment explanation
Indices: 36638027--36638197 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
36638017 GCCCATAAGT
*
36638027 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
36638091 ATGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
36638120 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36638185 CGAGTTCGGATGC
66 CGAGTTCGGATGC
36638198 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36638213 original size:46 final size:46
Alignment explanation
Indices: 36638019--36638199 Score: 217
Period size: 46 Copynumber: 3.9 Consensus size: 46
36638009 TGTAACCCGC
* *
36638019 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACGCTCGCAT
* * *
36638065 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
36638115 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
36638158 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
36638200 AACCATCCTA
Statistics
Matches: 114, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.04
46 69 0.61
47 31 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:36641962 original size:13 final size:13
Alignment explanation
Indices: 36641944--36641969 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36641934 TCGGGGCATA
36641944 AAAAAAATTAATT
1 AAAAAAATTAATT
36641957 AAAAAAATTAATT
1 AAAAAAATTAATT
36641970 TGCTCACATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAAAAATTAATT
Found at i:36642649 original size:24 final size:24
Alignment explanation
Indices: 36642622--36642669 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36642612 TAGTCACAAA
36642622 ATACAAAGATAACTCGTTGATAGT
1 ATACAAAGATAACTCGTTGATAGT
36642646 ATACAAAGATAACTCGTTGATAGT
1 ATACAAAGATAACTCGTTGATAGT
36642670 GTGAGGCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (24 bp):
ATACAAAGATAACTCGTTGATAGT
Found at i:36649151 original size:39 final size:39
Alignment explanation
Indices: 36649097--36649290 Score: 244
Period size: 40 Copynumber: 4.9 Consensus size: 39
36649087 TGTGTATGAA
*
36649097 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
36649136 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * * *
36649175 TGTGCAAGCTATGATATCCGGGATAAACTCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGC-CCGAAGGCAAT
* *
36649215 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* * * * *
36649255 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGG
36649291 TGTTTGAACA
Statistics
Matches: 135, Mismatches: 18, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
39 61 0.45
40 73 0.54
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:36649223 original size:79 final size:79
Alignment explanation
Indices: 36649108--36649259 Score: 252
Period size: 79 Copynumber: 1.9 Consensus size: 79
36649098 GTGCGAATTG
* *
36649108 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGATAAACCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
36649172 AATTGTGCAAGCTA
66 AATTGTGCAAGCTA
*
36649186 TGATATCCGGGATAAACTCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGG
1 TGATATCCGGGATAAAC-CCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGG
*
36649251 CATTTGTGC
65 CAATTGTGC
36649260 GGGTTATCAT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
78 15 0.22
79 37 0.54
80 16 0.24
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGATAAACCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCAAGCTA
Found at i:36658128 original size:66 final size:68
Alignment explanation
Indices: 36658052--36658238 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
36658042 TAGTACCACT
*
36658052 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
36658114 CACG
65 CACG
36658118 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
36658183 ATCACG
63 ATCACG
36658189 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
36658239 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:36658163 original size:71 final size:71
Alignment explanation
Indices: 36658075--36658238 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
36658065 CGATTTGTCT
36658075 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36658140 CTTTCA
66 CTTTCA
36658146 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36658211 CTTTCA
66 CTTTCA
36658217 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36658239 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36658276 original size:71 final size:70
Alignment explanation
Indices: 36658075--36658272 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
36658065 CGATTTGTCT
* * *
36658075 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
36658140 CTTTCA
65 CTTTCA
* * *
36658146 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
36658211 CTTTCA
65 CTTTCA
* *
36658217 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
36658273 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:36665696 original size:66 final size:68
Alignment explanation
Indices: 36665620--36665806 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
36665610 TAGTACCACT
*
36665620 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
36665682 CACG
65 CACG
36665686 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
36665751 ATCACG
63 ATCACG
36665757 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
36665807 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:36665731 original size:71 final size:71
Alignment explanation
Indices: 36665643--36665806 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
36665633 CGATTTGTCT
36665643 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36665708 CTTTCA
66 CTTTCA
36665714 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36665779 CTTTCA
66 CTTTCA
36665785 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36665807 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36665844 original size:71 final size:70
Alignment explanation
Indices: 36665643--36665840 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
36665633 CGATTTGTCT
* * *
36665643 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
36665708 CTTTCA
65 CTTTCA
* * *
36665714 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
36665779 CTTTCA
65 CTTTCA
* *
36665785 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
36665841 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:36667841 original size:55 final size:53
Alignment explanation
Indices: 36667712--36667897 Score: 142
Period size: 53 Copynumber: 3.5 Consensus size: 53
36667702 AACTTATGAT
* * * *
36667712 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAT
1 TGCCATGTCTTGACATGGTCTTACATGGGATACTTGCCTTATGAACTCACCAA
* ** * ** * *
36667765 TGCCATGCCTTGGGATGGTCTTACATGGGATATTTGCCTTATAGTAGTTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATACTTGCCTTAT-G-AACTCACCAA
* * * *
36667820 TGCCATGTCTTGACATTGTCTTACAT--GATTTCATTGCCTTATAAAACTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGA-TAC-TTGCCTTAT-GAACTCACCAA
* * *
36667874 TCCCATGCCTTGGCATGGTCTTAC
1 TGCCATGTCTTGACATGGTCTTAC
36667898 TTGGTATCCT
Statistics
Matches: 103, Mismatches: 26, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
53 37 0.36
54 29 0.28
55 37 0.36
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATACTTGCCTTATGAACTCACCAA
Done.