Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 122 of 292
Found at i:36675250 original size:27 final size:27
Alignment explanation
Indices: 36675220--36675293 Score: 130
Period size: 27 Copynumber: 2.7 Consensus size: 27
36675210 TTTGATGAAA
36675220 TGACTGTTATACCCCTATGAGGTAAAT
1 TGACTGTTATACCCCTATGAGGTAAAT
*
36675247 TGACTGTTATACCCTTATGAGGTAAAT
1 TGACTGTTATACCCCTATGAGGTAAAT
*
36675274 TGACTGATATACCCCTATGA
1 TGACTGTTATACCCCTATGA
36675294 TATGTATGAC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (27 bp):
TGACTGTTATACCCCTATGAGGTAAAT
Found at i:36678765 original size:28 final size:28
Alignment explanation
Indices: 36678720--36678816 Score: 178
Period size: 28 Copynumber: 3.5 Consensus size: 28
36678710 CTTAAAACCC
*
36678720 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
36678747 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
36678775 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
36678803 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
36678817 TGATCTACGC
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
27 7 0.10
28 61 0.90
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:36680668 original size:19 final size:18
Alignment explanation
Indices: 36680631--36680674 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
36680621 ATACATACAG
36680631 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
36680648 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
36680667 TACTAATT
1 TAATAATT
36680675 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:36687797 original size:59 final size:57
Alignment explanation
Indices: 36687702--36687831 Score: 215
Period size: 59 Copynumber: 2.2 Consensus size: 57
36687692 GACAAGATTG
* * *
36687702 GCACTAAGTGTGCGGGTTTAAAAATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAAATATAGCACTAAGTGTGCGAGCTGAAAATATATA
36687759 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAA--ATATAGCACTAAGTGTGCGAGCTGAAAATATATA
36687818 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36687832 GATTCACTAT
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
57 20 0.29
59 48 0.71
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAAATATAGCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:36687843 original size:29 final size:29
Alignment explanation
Indices: 36687702--36687831 Score: 217
Period size: 29 Copynumber: 4.5 Consensus size: 29
36687692 GACAAGATTG
* * *
36687702 GCACTAAGTGTGCGGGTTTAAAA-ATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
36687730 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
36687759 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
36687789 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
36687818 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36687832 GATTCACTAT
Statistics
Matches: 97, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
28 20 0.21
29 48 0.49
30 29 0.30
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:36695820 original size:59 final size:58
Alignment explanation
Indices: 36695724--36695855 Score: 246
Period size: 59 Copynumber: 2.3 Consensus size: 58
36695714 AAAATTGTAC
36695724 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
36695782 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
36695841 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36695856 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:36695844 original size:88 final size:89
Alignment explanation
Indices: 36695694--36695855 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
36695684 GACAAGATTG
* * *
36695694 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
36695759 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
36695783 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
36695847 AAGTGTGCG
66 AAGTGTGCG
36695856 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:36695867 original size:29 final size:29
Alignment explanation
Indices: 36695724--36695855 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
36695714 AAAATTGTAC
*
36695724 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
36695753 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
36695782 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
36695812 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
36695841 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36695856 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:36703306 original size:40 final size:40
Alignment explanation
Indices: 36703247--36703414 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
36703237 CATTTGAATG
* * *
36703247 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
36703287 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * **
36703327 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * ** *
36703367 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTCTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
36703407 ATATCCGG
1 ATATCCGG
36703415 TTAAATCCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 98 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:36709388 original size:39 final size:39
Alignment explanation
Indices: 36709320--36709424 Score: 192
Period size: 39 Copynumber: 2.7 Consensus size: 39
36709310 CCGCACAAAG
*
36709320 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
36709360 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
36709399 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
36709425 TCGAACATTC
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
39 55 0.86
40 9 0.14
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:36720757 original size:40 final size:40
Alignment explanation
Indices: 36720711--36720869 Score: 189
Period size: 40 Copynumber: 4.0 Consensus size: 40
36720701 ACTACTCGTT
* * * *
36720711 CAAATGCCTTCGGGACATAGCCCGGTTATGATAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCATAACTCGCA
* * *
36720751 CAAATGCCTTCGGGAGTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCATAACTCGCA
*
36720791 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAACTC-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCATAACTCGCA
* * * *
36720829 CAATTGCCTT-GGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCATAACTCGCA
36720868 CA
1 CA
36720870 TTCATACACA
Statistics
Matches: 104, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
37 3 0.03
38 32 0.31
39 23 0.22
40 46 0.44
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCATAACTCGCA
Found at i:36720844 original size:38 final size:39
Alignment explanation
Indices: 36720728--36720869 Score: 171
Period size: 38 Copynumber: 3.6 Consensus size: 39
36720718 CTTCGGGACA
* * * *
36720728 TAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGAG-T
1 TAGCCCGGATATCATAACTCGCACAATTGCCTT-GGG-GCT
* * *
36720768 TAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTGGGGCT
36720807 TAGCCCGGATATCATAACTC-CACAATTGCCTTGGGGCT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTGGGGCT
* *
36720845 TAGCCCGGATATCACAATTCGCACA
1 TAGCCCGGATATCATAACTCGCACA
36720870 TTCATACACA
Statistics
Matches: 88, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
38 36 0.41
39 25 0.28
40 27 0.31
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.23
Consensus pattern (39 bp):
TAGCCCGGATATCATAACTCGCACAATTGCCTTGGGGCT
Found at i:36720867 original size:77 final size:80
Alignment explanation
Indices: 36720678--36720869 Score: 216
Period size: 80 Copynumber: 2.5 Consensus size: 80
36720668 AAATCACATA
* * ** * * *
36720678 CCTTC-GGAGTTTAA-CCGGATATAACTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATG
1 CCTTCGGGAG-TTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGACATAGCCCGGATATC
36720741 ATAACCCGCACAAATG
65 ATAACCCGCACAAATG
*
36720757 CCTTCGGGAGTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 CCTTCGGGAGTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGACATAGCCCGGATATCA
* *
36720821 TAACTC-CACAATTG
66 TAACCCGCACAAATG
* *
36720835 CCTT-GGG-GCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGAG-TTAACCCGGATATCACAACTCGCACA
36720870 TTCATACACA
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
76 1 0.01
77 27 0.28
78 11 0.11
79 27 0.28
80 32 0.33
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
CCTTCGGGAGTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGACATAGCCCGGATATCA
TAACCCGCACAAATG
Found at i:36727054 original size:39 final size:39
Alignment explanation
Indices: 36727000--36727152 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
36726990 GAATGTTCGA
* * *
36727000 GTGATAACCGGGCTAAGCCTGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
36727039 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
36727078 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTACGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
36727117 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
36727153 GGTTACCATA
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 86 0.84
40 16 0.16
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:36727102 original size:78 final size:79
Alignment explanation
Indices: 36727001--36727183 Score: 251
Period size: 78 Copynumber: 2.3 Consensus size: 79
36726991 AATGTTCGAG
* *
36727001 TGATAACCGGGCTAAGCCTGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTACGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
36727065 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
* * *
36727079 TGATATCCGGGCTAAGCCCGAAGGCAATTGTACGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTACGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
* * *
36727144 ATTTGTGCGGGTTA
66 AATTGTGCGAGCTA
** *
36727158 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATAACCGGGCTAAG-CCCGAAGGC
36727184 GTTTGAACGA
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
78 50 0.55
79 32 0.35
80 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.23
Consensus pattern (79 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTACGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:36727168 original size:40 final size:39
Alignment explanation
Indices: 36727001--36727183 Score: 222
Period size: 39 Copynumber: 4.6 Consensus size: 39
36726991 AATGTTCGAG
* * * *
36727001 TGATAACCGGGCTAAGCCTGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
36727040 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
36727079 TGATATCCGGGCTAAGCCCGAAGGCAATTGTACGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
36727118 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
36727158 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
36727184 GTTTGAACGA
Statistics
Matches: 125, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 85 0.68
40 40 0.32
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:36727210 original size:79 final size:78
Alignment explanation
Indices: 36727003--36727221 Score: 226
Period size: 78 Copynumber: 2.8 Consensus size: 78
36726993 TGTTCGAGTG
* ** * * *
36727003 ATAACCGGGCTAAGCCTGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 ATAACCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAAT
**
36727068 TGTGCGAGCTATG
66 TGTGCGAGCTACC
* * * *
36727081 ATATCCGGGCTAAGCCCGAAGGCAATTGTACGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAA
* *
36727146 TTGTGCGGGTTACC
65 TTGTGCGAGCTACC
* ** *
36727160 ATAACCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 ATAACCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
36727222 TATGTGATTT
Statistics
Matches: 120, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 49 0.41
79 45 0.38
80 25 0.21
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (78 bp):
ATAACCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAAT
TGTGCGAGCTACC
Found at i:36730312 original size:31 final size:31
Alignment explanation
Indices: 36730274--36730352 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
36730264 TTTAACGGTT
* *
36730274 ACTGGGCCTAAGCCTTTTCATAAATTATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
36730305 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
36730336 ACTAGGCCGAGGCCTTT
1 ACTGGGCCGAAGCCTTT
36730353 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:36730428 original size:42 final size:42
Alignment explanation
Indices: 36730376--36730464 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
36730366 TGGCCCTTAG
* * * *
36730376 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCACTTCAATATCACATGAAATGCCAATGAATGTATGCAA
36730418 GCCCACTTCAATATCACATGAAATGCCAATGAATGTATGCAA
1 GCCCACTTCAATATCACATGAAATGCCAATGAATGTATGCAA
36730460 GCCCA
1 GCCCA
36730465 TTTGGGGAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.26
Consensus pattern (42 bp):
GCCCACTTCAATATCACATGAAATGCCAATGAATGTATGCAA
Found at i:36730658 original size:26 final size:26
Alignment explanation
Indices: 36730612--36730709 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
36730602 CCTCTTTAAC
36730612 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
36730637 AACTGGGGCATAAGCTCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
36730663 AACTGGGGGATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
36730689 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
36730710 GCACTTCCTC
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 10 0.16
26 54 0.84
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:36730681 original size:52 final size:51
Alignment explanation
Indices: 36730612--36730709 Score: 169
Period size: 52 Copynumber: 1.9 Consensus size: 51
36730602 CCTCTTTAAC
*
36730612 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCTCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
36730663 AACTGGGGGATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
36730710 GCACTTCCTC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 9 0.20
52 35 0.80
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (51 bp):
AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:36731538 original size:27 final size:26
Alignment explanation
Indices: 36731508--36731573 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
36731498 GGGCATATTT
36731508 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACC-TACAAGGGCT-TTACG
* *
36731535 GTCACTTTACTCTACAGGGGCTTTACG
1 GTCATTTTAC-CTACAAGGGCTTTACG
*
36731562 GTCTTTTTACCT
1 GTCATTTTACCT
36731574 GTTAAGGGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
26 2 0.06
27 29 0.88
28 2 0.06
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTACAAGGGCTTTACG
Found at i:36731653 original size:27 final size:26
Alignment explanation
Indices: 36731623--36731719 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 26
36731613 GTAAATCTAC
36731623 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCA-TAATTTTGT
* *
36731650 AAACCAATGGTTTTTCATAATTTT-T
1 AAACCAAGGGTATTTCATAATTTTGT
* *
36731675 AGAAAGTCAAGGGTATTTCTATAACTTTGT
1 --AAA-CCAAGGGTATTTC-ATAATTTTGT
* *
36731705 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
36731720 TGGTAATTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
25 1 0.02
26 7 0.12
27 29 0.50
28 13 0.22
29 7 0.12
30 1 0.02
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (26 bp):
AAACCAAGGGTATTTCATAATTTTGT
Found at i:36731730 original size:55 final size:52
Alignment explanation
Indices: 36731608--36731788 Score: 157
Period size: 54 Copynumber: 3.3 Consensus size: 52
36731598 TCTACAAGGG
* * * *
36731608 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGT-
1 TTTTGGTAATTTTACAAATCAAGGGTATTTCA-TAA-TTTGTAAACCAGTGGTA
** * * *
36731661 TTTTCATAATTTTTAGAAAGTCAAGGGTATTTCTATAACTTTGTAAATCAGGGGTA
1 TTTTGGTAA-TTTTACAAA-TCAAGGGTATTTC-ATAA-TTTGTAAACCAGTGGTA
** ** *
36731717 TTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAAGCAGTGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTATTTC-ATAATTT-GTAAACCAGTGGTA
36731771 TTTTGGTAATTTTACAAA
1 TTTTGGTAATTTTACAAA
36731789 CTAGGGGTAT
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 10 0.10
54 49 0.48
55 36 0.35
56 8 0.08
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.40
Consensus pattern (52 bp):
TTTTGGTAATTTTACAAATCAAGGGTATTTCATAATTTGTAAACCAGTGGTA
Found at i:36731735 original size:27 final size:27
Alignment explanation
Indices: 36731705--36731808 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
36731695 ATAACTTTGT
36731705 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * * *
36731732 AAAT-TGAGGGTATTTCGATAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* *
36731759 AAAGCAGTGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
36731786 AAA-CTAGGGGTATTTTGGTAATT
1 AAATC-AGGGGTATTTTGGTAATT
36731809 CTATCCTACA
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
26 2 0.03
27 60 0.95
28 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:36731823 original size:27 final size:27
Alignment explanation
Indices: 36731712--36731835 Score: 94
Period size: 27 Copynumber: 4.6 Consensus size: 27
36731702 TGTAAATCAG
* * *
36731712 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTCTACAAACTAA
* *
36731739 GGGTATTTCGATAATT-TCACAAAGC--A
1 GGGTATTTTGGTAATTCT-ACAAA-CTAA
* *
36731765 GTGGTATTTTGGTAATTTTACAAACTAG
1 G-GGTATTTTGGTAATTCTACAAACTAA
**
36731793 GGGTATTTTGGTAATTCTATCCTAC-AA
1 GGGTATTTTGGTAATTCTA-CAAACTAA
*
36731820 GGGTATTTTAGTAATT
1 GGGTATTTTGGTAATT
36731836 TCACAATCGA
Statistics
Matches: 79, Mismatches: 11, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
26 4 0.05
27 70 0.89
28 5 0.06
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTCTACAAACTAA
Found at i:36731969 original size:27 final size:27
Alignment explanation
Indices: 36731840--36731958 Score: 193
Period size: 27 Copynumber: 4.4 Consensus size: 27
36731830 GTAATTTCAC
*
36731840 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
* *
36731867 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
*
36731894 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
*
36731921 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
36731948 AATCGAGGGTA
1 AATCGAGGGTA
36731959 CTTTGGTAAT
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:36734225 original size:31 final size:31
Alignment explanation
Indices: 36734187--36734265 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
36734177 TTTAACGGTT
*
36734187 ACTGGGCCTAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
36734218 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
36734249 ACTAGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
36734266 ACTGTAAACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:36734336 original size:42 final size:42
Alignment explanation
Indices: 36734289--36734380 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
36734279 TGGCCCTTAG
* ** *
36734289 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
36734331 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
36734373 GCCCATTT
1 GCCCATTT
36734381 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:36734548 original size:25 final size:25
Alignment explanation
Indices: 36734520--36734616 Score: 151
Period size: 25 Copynumber: 3.8 Consensus size: 25
36734510 AGCCTCTTTA
36734520 AAACTGGGGCA-AAGCCCTTTTCGGT
1 AAACT-GGGCATAAGCCCTTTTCGGT
**
36734545 AAACTGGGCATAAGCCCTTTTCAAT
1 AAACTGGGCATAAGCCCTTTTCGGT
36734570 AAACTGGGCATAAGCCCTTTTCGGT
1 AAACTGGGCATAAGCCCTTTTCGGT
36734595 AAACTGGGGCATAAGCCCTTTT
1 AAACT-GGGCATAAGCCCTTTT
36734617 GCACTTCCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
24 5 0.08
25 45 0.68
26 16 0.24
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAACTGGGCATAAGCCCTTTTCGGT
Found at i:36734595 original size:50 final size:51
Alignment explanation
Indices: 36734520--36734616 Score: 171
Period size: 50 Copynumber: 1.9 Consensus size: 51
36734510 AGCCTCTTTA
36734520 AAACTGGGGCAAAGCCCTTTTCGGTAAACT-GGGCATAAGCCCTTTTCAAT
1 AAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAAT
36734570 AAACT-GGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
1 AAACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
36734617 GCACTTCCTC
Statistics
Matches: 45, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
49 5 0.11
50 24 0.53
51 16 0.36
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (51 bp):
AAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAAT
Found at i:36735442 original size:27 final size:27
Alignment explanation
Indices: 36735412--36735476 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
36735402 GGGCATATTC
36735412 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
36735439 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
36735466 GTCTTTTTACC
1 GTCATTTTACC
36735477 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:36735560 original size:27 final size:27
Alignment explanation
Indices: 36735534--36735663 Score: 102
Period size: 27 Copynumber: 4.7 Consensus size: 27
36735524 ATCTACAAAC
*
36735534 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *
36735561 CAATGGTTTTTCCA-TAATTTT-TAGAAAGT
1 CAAGGGTATTT-CAGTAATTTTGT--AAA-T
* *
36735590 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** **
36735617 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *
36735644 TAAGGGTATTTCGGTAATTT
1 CAAGGGTATTTCAGTAATTT
36735664 CACAAACCAG
Statistics
Matches: 81, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.01
27 55 0.68
28 9 0.11
29 15 0.19
30 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:36735735 original size:27 final size:27
Alignment explanation
Indices: 36735618--36735719 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
36735608 TTTGTAAATC
* *
36735618 AGGGGTATTTTGGTAATTTTACAAATT
1 AGGGGTATTTTGGTAATTCTACAAACT
* * *
36735645 AAGGGTATTTCGGTAATT-TCACAAACC
1 AGGGGTATTTTGGTAATTCT-ACAAACT
* *
36735672 AGTGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTCTACAAACT
36735699 AGGGGTATTTTGGTAATTCTA
1 AGGGGTATTTTGGTAATTCTA
36735720 TCCTACAGGG
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.02
27 61 0.97
28 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTCTACAAACT
Found at i:36735735 original size:54 final size:54
Alignment explanation
Indices: 36735591--36735716 Score: 164
Period size: 54 Copynumber: 2.3 Consensus size: 54
36735581 TTAGAAAGTC
* ** * *
36735591 AAGGGTATTTCTGTAACTTT-GTAAATCAGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAA-TTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACT
*
36735645 AAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACT
* *
36735699 AGGGGTATTTTGGTAATT
1 AAGGGTATTTCGGTAATT
36735717 CTATCCTACA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
53 3 0.05
54 60 0.95
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACT
Found at i:36735781 original size:27 final size:27
Alignment explanation
Indices: 36735747--36735892 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
36735737 ATAATTTCAC
* *
36735747 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
36735774 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* ***
36735801 AATCAAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * * *
36735828 AATCAAAGATAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
36735855 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
36735882 AATCGAGGGTA
1 AATCGAGGGTA
36735893 CTTTGGTAAT
Statistics
Matches: 100, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.43, C:0.08, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:36735903 original size:54 final size:54
Alignment explanation
Indices: 36735747--36735892 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
36735737 ATAATTTCAC
* *
36735747 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
* * * * *
36735801 AATCAAGGGTAAAACAATAATTCTGTAAATCAAAGATAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
*
36735855 AATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
36735893 CTTTGGTAAT
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.43, C:0.08, G:0.21, T:0.28
Consensus pattern (54 bp):
AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:36735915 original size:54 final size:54
Alignment explanation
Indices: 36735747--36735917 Score: 207
Period size: 54 Copynumber: 3.2 Consensus size: 54
36735737 ATAATTTCAC
* * *
36735747 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
* * * * * *
36735801 AATCAAGGGTAAAACAATAATTCTGTAAATCAAAGATAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
* *** *
36735855 AATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
*
36735909 AGTCGAGGG
1 AATCGAGGG
36735918 CATTTCATAA
Statistics
Matches: 98, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 98 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
Found at i:36737673 original size:20 final size:21
Alignment explanation
Indices: 36737648--36737687 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
36737638 TGGGTCCGAA
36737648 AGCCCATTG-GGCCCAATTTT
1 AGCCCATTGAGGCCCAATTTT
36737668 AGCCCATTGAGGCCCAATTT
1 AGCCCATTGAGGCCCAATTT
36737688 ACCATCGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (21 bp):
AGCCCATTGAGGCCCAATTTT
Found at i:36738032 original size:27 final size:27
Alignment explanation
Indices: 36738002--36738066 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
36737992 GGGCATATTC
36738002 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* ** *
36738029 GTCACTTTACTTTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
36738056 GTCTTTTTACC
1 GTCATTTTACC
36738067 TATTAGGGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:36738158 original size:27 final size:28
Alignment explanation
Indices: 36738124--36738253 Score: 101
Period size: 27 Copynumber: 4.8 Consensus size: 28
36738114 ATCTACAAAC
36738124 CAAGGGTATTT-TAGTAATTTTGTAAAT
1 CAAGGGTATTTCTAGTAATTTTGTAAAT
* *
36738151 CAATGGTATTTCCA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTCTAGTAATTTTGT--AAA-T
*
36738180 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTTCTAGTAATTTTGTAAAT
* * **
36738207 CAGGGGTATTT-TGGTAATTTTACAAAT
1 CAAGGGTATTTCTAGTAATTTTGTAAAT
** *
36738234 TGAGGGTATTTC-GGTAATTT
1 CAAGGGTATTTCTAGTAATTT
36738254 CACAAACCAG
Statistics
Matches: 83, Mismatches: 12, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
26 2 0.02
27 55 0.66
28 7 0.08
29 18 0.22
30 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (28 bp):
CAAGGGTATTTCTAGTAATTTTGTAAAT
Found at i:36738225 original size:56 final size:54
Alignment explanation
Indices: 36738117--36738307 Score: 158
Period size: 54 Copynumber: 3.5 Consensus size: 54
36738107 TTGGTAAATC
* * ***
36738117 TACAAACCAAGGGTATTT-TAGTAATTTTGTAAATCAATGGTATTTCCATAATTTT
1 TACAAATCAAGGGTATTTCT-GTAA-TTTGTAAATCAGTGGTATTTTGGTAATTTT
* *
36738172 TAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTCTGTAA-TTTGTAAATCAGTGGTATTTTGGTAATTTT
** * ** *
36738227 TACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTCTGTAATTT-GTAAATCAGTGGTATTTTGGTAATTTT
*
36738281 TACAAA-CTAGGGGTATTT-TGGTAATTT
1 TACAAATC-AAGGGTATTTCT-GTAATTT
36738308 TATCTTACAG
Statistics
Matches: 111, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
53 3 0.03
54 58 0.52
55 13 0.12
56 36 0.32
57 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCTGTAATTTGTAAATCAGTGGTATTTTGGTAATTTT
Found at i:36738319 original size:27 final size:26
Alignment explanation
Indices: 36738207--36738339 Score: 140
Period size: 27 Copynumber: 5.0 Consensus size: 26
36738197 CTTTGTAAAT
36738207 CAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
** * *
36738233 TTGAGGGTATTTCGGTAATTTCACAAA
1 CAG-GGGTATTTTGGTAATTTTACAAA
*
36738260 CCAGTGGTATTTTGGTAATTTTACAAA
1 -CAGGGGTATTTTGGTAATTTTACAAA
**
36738287 CTAGGGGTATTTTGGTAATTTTATCTTA
1 C-AGGGGTATTTTGGTAATTTTA-CAAA
** *
36738315 CAGGGGTATTTCAGTAATTTCACAA
1 CAGGGGTATTTTGGTAATTTTACAA
36738340 TCGAGGCTAA
Statistics
Matches: 86, Mismatches: 17, Indels: 8
0.77 0.15 0.07
Matches are distributed among these distances:
26 3 0.03
27 79 0.92
28 4 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (26 bp):
CAGGGGTATTTTGGTAATTTTACAAA
Found at i:36738379 original size:27 final size:27
Alignment explanation
Indices: 36738349--36738484 Score: 193
Period size: 27 Copynumber: 5.0 Consensus size: 27
36738339 ATCGAGGCTA
**
36738349 AAAACGGTAATT-TCATAAATTGAGGGT
1 AAAACGGTAATTCT-ATAAATCAAGGGT
*
36738376 AAAATGGTAATTCTATAAATCAAGGGT
1 AAAACGGTAATTCTATAAATCAAGGGT
*
36738403 AAAACGGTAATTCTATAAATCGAGGGT
1 AAAACGGTAATTCTATAAATCAAGGGT
36738430 AAAACGGTAATTCTATAAATCAAGGGT
1 AAAACGGTAATTCTATAAATCAAGGGT
* * *
36738457 AAAATGGTAATTCTGTAAATCGAGGGT
1 AAAACGGTAATTCTATAAATCAAGGGT
36738484 A
1 A
36738485 CTTTGGTAAT
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 98 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
AAAACGGTAATTCTATAAATCAAGGGT
Found at i:36738495 original size:54 final size:54
Alignment explanation
Indices: 36738349--36738484 Score: 220
Period size: 54 Copynumber: 2.5 Consensus size: 54
36738339 ATCGAGGCTA
*
36738349 AAAACGGTAATT-TCATAAATTGAGGGTAAAATGGTAATTCTATAAATCAAGGGT
1 AAAACGGTAATTCT-ATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGT
*
36738403 AAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGT
1 AAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGT
* *
36738457 AAAATGGTAATTCTGTAAATCGAGGGTA
1 AAAACGGTAATTCTATAAATCGAGGGTA
36738485 CTTTGGTAAT
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
54 76 0.99
55 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (54 bp):
AAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGT
Found at i:36738509 original size:81 final size:81
Alignment explanation
Indices: 36738328--36738509 Score: 217
Period size: 81 Copynumber: 2.2 Consensus size: 81
36738318 GGGTATTTCA
* * **
36738328 GTAATTTCACAATCGAGGCTAAAAACGGTAATTTCATAAATTGAGGGTAAAATGGTAATTCTATA
1 GTAATTTTACAATCGAGGGTAAAAACGGTAATTTCATAAATCAAGGGTAAAATGGTAATTCTATA
36738393 AATCAAGGGTAAAACG
66 AATCAAGGGTAAAACG
36738409 GTAATTCTATA-AATCGAGGGT-AAAACGGTAA-TTCTATAAATCAAGGGTAAAATGGTAATTCT
1 GTAATT-T-TACAATCGAGGGTAAAAACGGTAATTTC-ATAAATCAAGGGTAAAATGGTAATTCT
* * ****
36738471 GTAAATCGAGGGTACTTTG
63 ATAAATCAAGGGTAAAACG
36738490 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAA-TCGAGGG
36738510 CATTTCAATA
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
79 2 0.02
80 6 0.07
81 67 0.78
82 10 0.12
83 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.29
Consensus pattern (81 bp):
GTAATTTTACAATCGAGGGTAAAAACGGTAATTTCATAAATCAAGGGTAAAATGGTAATTCTATA
AATCAAGGGTAAAACG
Found at i:36743734 original size:27 final size:27
Alignment explanation
Indices: 36743696--36743752 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
36743686 GCCAGTTTAT
36743696 CAAGCGAGTAATCTGTACGAACTGGAA
1 CAAGCGAGTAATCTGTACGAACTGGAA
*
36743723 CAAGCGAGTAATCTGTAGGAACTGGAA
1 CAAGCGAGTAATCTGTACGAACTGGAA
36743750 CAA
1 CAA
36743753 AGTGAGCAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.18
Consensus pattern (27 bp):
CAAGCGAGTAATCTGTACGAACTGGAA
Found at i:36746084 original size:54 final size:54
Alignment explanation
Indices: 36746002--36746111 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
36745992 CACACATAAG
*
36746002 AATGAGTCGAGCCAGGATCAATCAATGCAATAACACTAGTATCATAAAGAGTGA
1 AATGAGTCGAACCAGGATCAATCAATGCAATAACACTAGTATCATAAAGAGTGA
36746056 AATGAGTCGAACCAGGATCAATCAATGCAATAACACTAGTATCATAAAGAGTGA
1 AATGAGTCGAACCAGGATCAATCAATGCAATAACACTAGTATCATAAAGAGTGA
36746110 AA
1 AA
36746112 GTGCCGGTAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.20
Consensus pattern (54 bp):
AATGAGTCGAACCAGGATCAATCAATGCAATAACACTAGTATCATAAAGAGTGA
Found at i:36747369 original size:80 final size:80
Alignment explanation
Indices: 36747231--36747398 Score: 327
Period size: 80 Copynumber: 2.1 Consensus size: 80
36747221 TTGTGCAGCC
*
36747231 AGATTAGTCCAAATATATTGTAAATCAATCGTTCATCATTTGGTAAAAGGCTTGCTTAGCCTCTC
1 AGATCAGTCCAAATATATTGTAAATCAATCGTTCATCATTTGGTAAAAGGCTTGCTTAGCCTCTC
36747296 CTTCTTGGTTACTCG
66 CTTCTTGGTTACTCG
36747311 AGATCAGTCCAAATATATTGTAAATCAATCGTTCATCATTTGGTAAAAGGCTTGCTTAGCCTCTC
1 AGATCAGTCCAAATATATTGTAAATCAATCGTTCATCATTTGGTAAAAGGCTTGCTTAGCCTCTC
36747376 CTTCTTGGTTACTCG
66 CTTCTTGGTTACTCG
36747391 AGATCAGT
1 AGATCAGT
36747399 TGAGATTCAA
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 87 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (80 bp):
AGATCAGTCCAAATATATTGTAAATCAATCGTTCATCATTTGGTAAAAGGCTTGCTTAGCCTCTC
CTTCTTGGTTACTCG
Found at i:36748498 original size:39 final size:39
Alignment explanation
Indices: 36748444--36748522 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
36748434 ATCGCATACA
36748444 TATTCCAAAACTTTCATCATCAAGTACCAATGAACATGT
1 TATTCCAAAACTTTCATCATCAAGTACCAATGAACATGT
36748483 TATTCCAAAACTTTCATCATCAAGTACCAATGAACATGT
1 TATTCCAAAACTTTCATCATCAAGTACCAATGAACATGT
36748522 T
1 T
36748523 CATTAAACAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.32
Consensus pattern (39 bp):
TATTCCAAAACTTTCATCATCAAGTACCAATGAACATGT
Found at i:36748886 original size:2 final size:2
Alignment explanation
Indices: 36748879--36748907 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
36748869 ACAAAGACAA
36748879 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36748908 GAAAGTAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36756084 original size:30 final size:30
Alignment explanation
Indices: 36756050--36756110 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36756040 TCCTTAACTC
36756050 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36756080 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36756110 A
1 A
36756111 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36760390 original size:55 final size:56
Alignment explanation
Indices: 36760325--36760439 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
36760315 AGCATGGCTG
* * *
36760325 CCAGATACAGA-AAATGTGACAGAGTCACCAAATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAAA-ACAGATAATTTGTGGCA-TAGCCA
* * * *
36760381 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAAAACAGATAATTTGTGGCATAGCCA
36760436 CCAG
1 CCAG
36760440 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAAAACAGATAATTTGTGGCATAGCCA
Found at i:36760436 original size:28 final size:27
Alignment explanation
Indices: 36760358--36760439 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
36760348 GTCACCAAAT
*
36760358 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATAATTTGTGGCA-TGCCACCAGA
** *
36760386 ACAGAT-ATACGTGGCAGGGCCACCAGA
1 ACAGATAATTTGTGGCA-TGCCACCAGA
36760413 ACAGATAATTTGTGGCATAGCCACCAG
1 ACAGATAATTTGTGGCAT-GCCACCAG
36760440 GACGCTTCCT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
27 23 0.51
28 22 0.49
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.20
Consensus pattern (27 bp):
ACAGATAATTTGTGGCATGCCACCAGA
Found at i:36760592 original size:28 final size:28
Alignment explanation
Indices: 36760545--36760637 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
36760535 AAATTAACCC
* * *
36760545 TAGGGGTATAAAGGTCATTTTGCATGCA
1 TAGGGGTATAATGGTAATTTTGCATACA
36760573 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
36760601 TAGGGGTATAATGGTAATTCTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
36760629 TAGGGGTAT
1 TAGGGGTAT
36760638 TCTAGTAAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.30, C:0.09, G:0.28, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:36764169 original size:15 final size:14
Alignment explanation
Indices: 36764148--36764238 Score: 69
Period size: 15 Copynumber: 6.3 Consensus size: 14
36764138 AAATCAAATG
36764148 AGAGAAAAAGAAAA
1 AGAGAAAAAGAAAA
*
36764162 ATGAGAAAAAG-AGA
1 A-GAGAAAAAGAAAA
* * *
36764176 GGAAAAACAATAAAA
1 AGAGAAA-AAGAAAA
*
36764191 GAGAGTGAAAAGAAAA
1 -AGAG-AAAAAGAAAA
*
36764207 TGAG-AAAAGAAAA
1 AGAGAAAAAGAAAA
36764220 AGATGAAAAAGAAAA
1 AGA-GAAAAAGAAAA
36764235 AGAG
1 AGAG
36764239 TGTGAAAAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
13 16 0.27
14 7 0.12
15 26 0.44
16 8 0.14
17 2 0.03
ACGTcount: A:0.69, C:0.01, G:0.24, T:0.05
Consensus pattern (14 bp):
AGAGAAAAAGAAAA
Found at i:36764215 original size:13 final size:14
Alignment explanation
Indices: 36764196--36764237 Score: 59
Period size: 13 Copynumber: 3.0 Consensus size: 14
36764186 TAAAAGAGAG
*
36764196 TGAAAAGAAAATGA
1 TGAAAAGAAAAAGA
36764210 -GAAAAGAAAAAGA
1 TGAAAAGAAAAAGA
36764223 TGAAAAAGAAAAAGA
1 TG-AAAAGAAAAAGA
36764238 GTGTGAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 12 0.48
14 1 0.04
15 12 0.48
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (14 bp):
TGAAAAGAAAAAGA
Found at i:36771495 original size:49 final size:49
Alignment explanation
Indices: 36771435--36771745 Score: 509
Period size: 49 Copynumber: 6.4 Consensus size: 49
36771425 TACATATATG
* * * *
36771435 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
36771484 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-GATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
*
36771532 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
*
36771581 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGT-GATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
* *
36771629 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
* *
36771678 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
*
36771727 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
36771746 TAATGTAAAA
Statistics
Matches: 251, Mismatches: 9, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
48 95 0.38
49 156 0.62
ACGTcount: A:0.28, C:0.09, G:0.34, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
Found at i:36771601 original size:97 final size:97
Alignment explanation
Indices: 36771435--36771745 Score: 541
Period size: 97 Copynumber: 3.2 Consensus size: 97
36771425 TACATATATG
* * * *
36771435 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
*
36771500 GGCCGATGTGATGAATGTGAAAGTGATGTATA
66 GGCCGATGTGGTGAATGTGAAAGTGATGTATA
*
36771532 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
36771597 GGCCGATGTGGTGAATGTGAAAGTGATGTATA
66 GGCCGATGTGGTGAATGTGAAAGTGATGTATA
* *
36771629 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
36771694 GGCCGATGTGGTGAATGTGAAAGTGTATGTATA
66 GGCCGATGTGGTGAATGTGAAAGTG-ATGTATA
36771727 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
36771746 TAATGTAAAA
Statistics
Matches: 205, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
97 180 0.88
98 25 0.12
ACGTcount: A:0.28, C:0.09, G:0.34, T:0.29
Consensus pattern (97 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
GGCCGATGTGGTGAATGTGAAAGTGATGTATA
Found at i:36771699 original size:146 final size:146
Alignment explanation
Indices: 36771435--36771750 Score: 544
Period size: 146 Copynumber: 2.2 Consensus size: 146
36771425 TACATATATG
*
36771435 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAAT
36771500 GGCCGATGTGATGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATG
66 GGCCGATGTGATGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATG
36771565 TGAAAGTGTATGTATA
131 TGAAAGTGTATGTATA
* * * *
36771581 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGT-GATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAAT
* *
36771645 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGATGAATGTGAAAGTG-ATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
36771710 GTGAAAGTGTATGTATA
130 GTGAAAGTGTATGTATA
*
36771727 TGTGATAAGGCCTAATGGCTAATG
1 TGTGATAAGGCCTAATGGCCAATG
36771751 TAAAATATAT
Statistics
Matches: 159, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
145 48 0.30
146 111 0.70
ACGTcount: A:0.28, C:0.09, G:0.34, T:0.29
Consensus pattern (146 bp):
TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATG
TGAAAGTGTATGTATA
Found at i:36771792 original size:146 final size:145
Alignment explanation
Indices: 36771435--36771793 Score: 463
Period size: 146 Copynumber: 2.5 Consensus size: 145
36771425 TACATATATG
* ** * * * *
36771435 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGTAATGAATGTGAAAGT-GATGCATATGTGATAAAGCCGAAT
36771500 GGCCGATGTGATGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATG
65 GGCCGATGTGATGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATG
36771565 TGAAAGTGTATGTATA
130 TGAAAGTGTATGTATA
* * ** * * * *
36771581 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCAATGTAATGAATGTGAAAGTGATGCATATGTGATAAAGCCGAATG
* *
36771646 GCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATG
66 GCCGATGTGATGAATGTGAAAGTG-ATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATG
36771711 TGAAAGTGTATGTATA
130 TGAAAGTGTATGTATA
* ** *
36771727 TGTGATAAGGCCTAATGGCTAATGTAAAAT-ATATGTGTGA-T-ATGCATATGTGGTAAAGCCGA
1 TGTGATAAGGCCTAATGGCCAATGT--AATGA-ATGTGAAAGTGATGCATATGTGATAAAGCCGA
36771789 ATGGC
63 ATGGC
36771794 TAATGTGAAT
Statistics
Matches: 190, Mismatches: 19, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
145 48 0.25
146 133 0.70
147 2 0.01
148 7 0.04
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (145 bp):
TGTGATAAGGCCTAATGGCCAATGTAATGAATGTGAAAGTGATGCATATGTGATAAAGCCGAATG
GCCGATGTGATGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGT
GAAAGTGTATGTATA
Found at i:36771897 original size:37 final size:37
Alignment explanation
Indices: 36771847--36771968 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
36771837 GGAATATGTT
*
36771847 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
36771884 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
36771921 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
36771958 CCGGGTAAGAC
1 CCGGGTAAGAC
36771969 TTCTTTTATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:36774067 original size:29 final size:29
Alignment explanation
Indices: 36774025--36774188 Score: 310
Period size: 29 Copynumber: 5.7 Consensus size: 29
36774015 GCGAATGATT
36774025 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
36774054 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
36774083 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
36774112 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
36774141 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
36774170 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
36774189 TTTTTCAACA
Statistics
Matches: 133, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 133 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:36774770 original size:40 final size:41
Alignment explanation
Indices: 36774672--36774770 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
36774662 TTCGAATGGT
* ** * *
36774672 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
36774713 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A
36774754 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
36774771 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
Found at i:36777685 original size:49 final size:49
Alignment explanation
Indices: 36777493--36777801 Score: 527
Period size: 49 Copynumber: 6.4 Consensus size: 49
36777483 TACATATATG
* * * * *
36777493 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTG-ATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
36777541 TGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
36777588 TGTGATGAGGCCTAATGGCCGATGT-GTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
36777636 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
36777685 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
36777734 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
36777783 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
36777802 TAATGTAAAA
Statistics
Matches: 253, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
47 58 0.23
48 56 0.22
49 139 0.55
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:36777856 original size:146 final size:144
Alignment explanation
Indices: 36777493--36777857 Score: 432
Period size: 146 Copynumber: 2.5 Consensus size: 144
36777483 TACATATATG
* * * * * * *
36777493 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTG-ATGTATATGTGAT-AGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGTGA-AAATATGAAAGTGTATGCATATGTGATAAAGCCGAAT
*
36777556 GGCCGATGTGATGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATGGCCGATGTGTGAATGT
65 GGCCAATGTGATGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATGGCCGATGTGTGAATGT
36777621 GAAAGTGTATGTATA
130 GAAAGTGTATGTATA
* * ** * * * * *
36777636 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGT-GAAAATATGAAAGTGTATGCATATGTGATAAAGCCGAAT
* *
36777701 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
65 GGCCAATGTGATGAATGTGAAAGTG-ATGTATATGTGATGAGGCCTAATGGCCGATGT-GTGAAT
36777766 GTGAAAGTGTATGTATA
128 GTGAAAGTGTATGTATA
* ** *
36777783 TGTGATAAGGCCTAATGGCTAATGT-AAAATAT-ATGTGTGATATGCATATGTGGTAAAGCCGAA
1 TGTGATAAGGCCTAATGGCCAATGTGAAAATATGA-AAGTG-TATGCATATGTGATAAAGCCGAA
*
36777846 TGGCTAATGTGA
64 TGGCCAATGTGA
36777858 ATGTTGTAAC
Statistics
Matches: 193, Mismatches: 22, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
143 34 0.18
144 15 0.08
145 40 0.21
146 59 0.31
147 45 0.23
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (144 bp):
TGTGATAAGGCCTAATGGCCAATGTGAAAATATGAAAGTGTATGCATATGTGATAAAGCCGAATG
GCCAATGTGATGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATGGCCGATGTGTGAATGTG
AAAGTGTATGTATA
Found at i:36778000 original size:37 final size:37
Alignment explanation
Indices: 36777903--36778023 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
36777893 GGAATATGTT
*
36777903 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
36777940 CCGGGTAAGA-CCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
36777976 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
36778013 CCGGGTAAGAC
1 CCGGGTAAGAC
36778024 TTCTTTTATA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
36 36 0.44
37 45 0.56
ACGTcount: A:0.26, C:0.19, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:36780557 original size:29 final size:29
Alignment explanation
Indices: 36780506--36780837 Score: 613
Period size: 29 Copynumber: 11.7 Consensus size: 29
36780496 TGTTGAAAAA
*
36780506 CTCGCACACA-AGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36780534 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36780563 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36780592 CTCGCACACATAGTGCCTCGA-TACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36780620 CTCGCA-ACAT-GTGCCTCGATTACT-AT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36780646 C-CGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36780674 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36780703 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36780732 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36780761 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36780790 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36780819 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
36780838 AATCATTCGC
Statistics
Matches: 297, Mismatches: 1, Indels: 11
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.01
26 16 0.05
27 22 0.07
28 26 0.09
29 229 0.77
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:36783016 original size:36 final size:37
Alignment explanation
Indices: 36782925--36783044 Score: 208
Period size: 37 Copynumber: 3.3 Consensus size: 37
36782915 TATAAAAGAA
*
36782925 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
36782962 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
36782999 GTCTTA-CCGGTCATAATCTCCACACGT-GTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
36783034 GTCTCACCCGG
1 GTCTTACCCGG
36783045 AACATATTCC
Statistics
Matches: 80, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
35 13 0.16
36 25 0.31
37 42 0.52
ACGTcount: A:0.21, C:0.33, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:36786334 original size:29 final size:29
Alignment explanation
Indices: 36786298--36786612 Score: 478
Period size: 29 Copynumber: 10.7 Consensus size: 29
36786288 TGTTGAAAAA
* *
36786298 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36786327 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36786356 CTCGC-CAC--A-TGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36786381 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36786410 CTCGCACACAT-GTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36786438 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36786467 CTCGCACATTCATAGTTCGCCACATGTCCCGATTACTGAT
1 CTCGCACA--CATAG-T-G-C-C---T--CGATTACTGAT
36786507 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36786536 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36786565 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36786594 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
36786613 AATCATTCGC
Statistics
Matches: 268, Mismatches: 2, Indels: 32
0.89 0.01 0.11
Matches are distributed among these distances:
25 21 0.08
26 4 0.01
28 32 0.12
29 172 0.64
31 6 0.02
32 1 0.00
33 1 0.00
34 2 0.01
35 2 0.01
36 1 0.00
37 1 0.00
38 6 0.02
40 19 0.07
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:36787399 original size:12 final size:13
Alignment explanation
Indices: 36787371--36787403 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
36787361 TTATTTCTTT
36787371 TTCTCCATCTACC
1 TTCTCCATCTACC
*
36787384 TTCTCC-TCTTCC
1 TTCTCCATCTACC
36787396 TTCTCCAT
1 TTCTCCAT
36787404 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:36788496 original size:28 final size:28
Alignment explanation
Indices: 36788464--36788528 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
36788454 ATTTACTAGA
*
36788464 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
36788492 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
36788520 ATACCCCTA
1 ATACCCCTA
36788529 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:36788691 original size:27 final size:28
Alignment explanation
Indices: 36788633--36788722 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
36788623 AGGAAGCGTC
*
36788633 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
36788661 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
36788688 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
36788717 CTGGTG
1 CTGGTG
36788723 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:36788733 original size:29 final size:28
Alignment explanation
Indices: 36788643--36788733 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
36788633 CTGGTGGCTA
* * *
36788643 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
36788671 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
36788698 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
36788727 TGTCACA
1 TGCCACA
36788734 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:36788741 original size:55 final size:56
Alignment explanation
Indices: 36788633--36788747 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
36788623 AGGAAGCGTC
* * *
36788633 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
36788688 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
36788744 CTGG
1 CTGG
36788748 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:36789210 original size:19 final size:19
Alignment explanation
Indices: 36789186--36789224 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
36789176 CTTTTAATTT
* *
36789186 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
36789205 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
36789224 T
1 T
36789225 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:36789838 original size:11 final size:10
Alignment explanation
Indices: 36789810--36789843 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
36789800 AGCCTGTAAG
36789810 TATTCTGAAT
1 TATTCTGAAT
*
36789820 TTTTCTGAAT
1 TATTCTGAAT
36789830 ATATTCTGAAT
1 -TATTCTGAAT
36789841 TAT
1 TAT
36789844 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:36796012 original size:16 final size:15
Alignment explanation
Indices: 36795986--36796017 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
36795976 GCTAGATCGG
36795986 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
36796001 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
36796017 C
1 C
36796018 GGTATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.28, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:36796300 original size:28 final size:28
Alignment explanation
Indices: 36796268--36796329 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
36796258 TACTAGAATG
*
36796268 CCCCTATGCATGCAAAATTACCATTATA
1 CCCCTATGCATGCAAAATGACCATTATA
* *
36796296 CCCCTATGTATGCAAAATGACCTTTATA
1 CCCCTATGCATGCAAAATGACCATTATA
36796324 CCCCTA
1 CCCCTA
36796330 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.31, G:0.08, T:0.29
Consensus pattern (28 bp):
CCCCTATGCATGCAAAATGACCATTATA
Found at i:36796493 original size:27 final size:28
Alignment explanation
Indices: 36796435--36796524 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
36796425 AGGAAGCGTC
*
36796435 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
36796463 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
36796490 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
36796519 CTGGTG
1 CTGGTG
36796525 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:36796535 original size:29 final size:28
Alignment explanation
Indices: 36796445--36796535 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
36796435 CTGGTGGCTA
* * *
36796445 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
36796473 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
36796500 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
36796529 TGTCACA
1 TGCCACA
36796536 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:36796543 original size:55 final size:56
Alignment explanation
Indices: 36796435--36796549 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
36796425 AGGAAGCGTC
* * *
36796435 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
36796490 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
36796546 CTGG
1 CTGG
36796550 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:36798881 original size:40 final size:39
Alignment explanation
Indices: 36798811--36798953 Score: 144
Period size: 40 Copynumber: 3.5 Consensus size: 39
36798801 CGATATCTCA
* * * * * * *
36798811 CACACTAAGTGTCGTACATAGCCGATGCTATCTTAAACTG
1 CACACTAAGTGCCATATATAGTCGAAGCTATGTCAAA-TG
36798851 CACACTAAGTGCCATATATAGTCGAAGCTATGTCAAATTG
1 CACACTAAGTGCCATATATAGTCGAAGCTATGTCAAA-TG
*
36798891 CACATTAAGTGCCATATATA-TAGCTGAAGCTATGTCAAATAG
1 CACACTAAGTGCCATATATAGT--C-GAAGCTATGTCAAAT-G
*
36798933 CACACTAAGTGCCACATATAG
1 CACACTAAGTGCCATATATAG
36798954 CTTATTTGTC
Statistics
Matches: 87, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 51 0.59
41 2 0.02
42 33 0.38
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.27
Consensus pattern (39 bp):
CACACTAAGTGCCATATATAGTCGAAGCTATGTCAAATG
Found at i:36798923 original size:42 final size:41
Alignment explanation
Indices: 36798849--36798952 Score: 149
Period size: 42 Copynumber: 2.5 Consensus size: 41
36798839 TATCTTAAAC
36798849 TGCACACTAAGTGCC-ATATATAGTCGAAGCTATGTCAAAT
1 TGCACACTAAGTGCCAATATATAGTCGAAGCTATGTCAAAT
*
36798889 TGCACATTAAGTGCCATATATATAG-CTGAAGCTATGTCAAAT
1 TGCACACTAAGTGCCA-ATATATAGTC-GAAGCTATGTCAAAT
*
36798931 AGCACACTAAGTGCCACATATA
1 TGCACACTAAGTGCCA-ATATA
36798953 GCTTATTTGT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
40 14 0.25
41 1 0.02
42 42 0.74
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (41 bp):
TGCACACTAAGTGCCAATATATAGTCGAAGCTATGTCAAAT
Found at i:36804774 original size:14 final size:15
Alignment explanation
Indices: 36804757--36804785 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36804747 TCACAAAAAT
36804757 TTCACACAT-ATAAA
1 TTCACACATAATAAA
36804771 TTCACACATAATAAA
1 TTCACACATAATAAA
36804786 CACATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:36813451 original size:16 final size:16
Alignment explanation
Indices: 36813430--36813462 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
36813420 TCGGCAAATC
36813430 CTGAAATGCCGAAAAG
1 CTGAAATGCCGAAAAG
36813446 CTGAAATGCCGAAAAG
1 CTGAAATGCCGAAAAG
36813462 C
1 C
36813463 CAAAACTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.21, G:0.24, T:0.12
Consensus pattern (16 bp):
CTGAAATGCCGAAAAG
Found at i:36813703 original size:29 final size:29
Alignment explanation
Indices: 36813659--36813741 Score: 114
Period size: 29 Copynumber: 2.9 Consensus size: 29
36813649 ATGACTATGT
36813659 ATGTGATTTGGGCCTAATGGGCCATACGA
1 ATGTGATTTGGGCCTAATGGGCCATACGA
* * *
36813688 ATGTGATTTGGACCTAATGGGCAATATGA
1 ATGTGATTTGGGCCTAATGGGCCATACGA
* *
36813717 ATGAGA-TTGGGCCTAGTGGGCCATA
1 ATGTGATTTGGGCCTAATGGGCCATA
36813742 TACATGTATG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 16 0.34
29 31 0.66
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (29 bp):
ATGTGATTTGGGCCTAATGGGCCATACGA
Found at i:36820825 original size:31 final size:31
Alignment explanation
Indices: 36820790--36820853 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
36820780 CCTTTTCATA
36820790 TTTCATATTTCATAACACTGGGCCAAAGCCT
1 TTTCATATTTCATAACACTGGGCCAAAGCCT
** **
36820821 TTTCATATTTCATATTACTGGGCTGAAGCCT
1 TTTCATATTTCATAACACTGGGCCAAAGCCT
36820852 TT
1 TT
36820854 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCAAAGCCT
Found at i:36821097 original size:24 final size:24
Alignment explanation
Indices: 36821061--36821213 Score: 254
Period size: 24 Copynumber: 6.4 Consensus size: 24
36821051 CTGGAGGCCT
*
36821061 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
36821086 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
36821110 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
36821133 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
36821157 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
36821181 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
36821205 AGCCCTTTT
1 AGCCCTTTT
36821214 TCACTTCCTC
Statistics
Matches: 125, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
23 23 0.18
24 98 0.78
25 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:36821137 original size:47 final size:47
Alignment explanation
Indices: 36821068--36821212 Score: 254
Period size: 47 Copynumber: 3.1 Consensus size: 47
36821058 CCTAGCCTCT
* *
36821068 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
36821115 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
36821162 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
36821210 TTT
1 TTT
36821213 TTCACTTCCT
Statistics
Matches: 94, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
47 48 0.51
48 46 0.49
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:36821291 original size:20 final size:20
Alignment explanation
Indices: 36821263--36821329 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
36821253 TTATGATTAC
*
36821263 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
36821283 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
36821303 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
36821323 ACCATGT
1 ATCATGT
36821330 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:36822416 original size:17 final size:17
Alignment explanation
Indices: 36822390--36822431 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
36822380 ATCTTCACTA
*
36822390 ATTTCTGCTTTTACGGT
1 ATTTCGGCTTTTACGGT
36822407 ATTTCGGCTTTTACGGT
1 ATTTCGGCTTTTACGGT
36822424 ATTTCGGC
1 ATTTCGGC
36822432 AGAAGTAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.12, C:0.19, G:0.21, T:0.48
Consensus pattern (17 bp):
ATTTCGGCTTTTACGGT
Found at i:36826569 original size:12 final size:12
Alignment explanation
Indices: 36826552--36826608 Score: 71
Period size: 11 Copynumber: 4.6 Consensus size: 12
36826542 ATACAAGTAT
36826552 AAAAAAATTCAA
1 AAAAAAATTCAA
*
36826564 AAAAAAA-TCGA
1 AAAAAAATTCAA
36826575 AAAAAAATTCAAA
1 AAAAAAATTC-AA
36826588 AAAAAAAGTTTCAA
1 AAAAAAA--TTCAA
36826602 AAAAAAA
1 AAAAAAA
36826609 AGATTTGTGC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
11 10 0.26
12 9 0.23
13 8 0.21
14 9 0.23
15 3 0.08
ACGTcount: A:0.75, C:0.07, G:0.04, T:0.14
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:36826591 original size:14 final size:15
Alignment explanation
Indices: 36826574--36826613 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
36826564 AAAAAAATCG
36826574 AAAAAAA-ATTCAAA
1 AAAAAAAGATTCAAA
*
36826588 AAAAAAAGTTTCAAA
1 AAAAAAAGATTCAAA
36826603 AAAAAAAGATT
1 AAAAAAAGATT
36826614 TGTGCAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.17
Consensus pattern (15 bp):
AAAAAAAGATTCAAA
Found at i:36827478 original size:9 final size:10
Alignment explanation
Indices: 36827471--36827527 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
36827461 AAGAGAAAAT
36827471 AAAGAAAAGA
1 AAAGAAAAGA
36827481 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
36827493 AAAGAAGA-A
1 AAAGAAAAGA
36827502 AAAGAAAATGA
1 AAAGAAAA-GA
36827513 AATA-AAAAGA
1 AA-AGAAAAGA
36827523 AAAGA
1 AAAGA
36827528 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 9 0.23
10 9 0.23
11 15 0.38
12 6 0.15
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:36827495 original size:6 final size:5
Alignment explanation
Indices: 36827471--36827527 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
36827461 AAGAGAAAAT
*
36827471 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
36827518 AAAGA AAAGA
1 AAAGA AAAGA
36827528 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:36827502 original size:15 final size:14
Alignment explanation
Indices: 36827471--36827527 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
36827461 AAGAGAAAAT
36827471 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
36827487 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
36827502 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
36827518 AAAGAAAAGA
1 AAAGAAAAGA
36827528 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:36827606 original size:13 final size:12
Alignment explanation
Indices: 36827575--36827606 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
36827565 TTAAGAGAAC
36827575 TTGAAAAAGCCT
1 TTGAAAAAGCCT
36827587 TTGAAAAAGCCT
1 TTGAAAAAGCCT
36827599 TTGAAAAA
1 TTGAAAAA
36827607 CAAAAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.25
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:36833606 original size:24 final size:24
Alignment explanation
Indices: 36833574--36833634 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
36833564 AAAATCCAAT
* * *
36833574 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAATA-A
36833598 GCACTATGTGTGCGAGTGTAATAA
1 GCACTATGTGTGCGAGTGTAATAA
36833622 GCACTATGTGTGC
1 GCACTATGTGTGC
36833635 AAATTCGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 27 0.82
25 6 0.18
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATAA
Found at i:36837184 original size:40 final size:40
Alignment explanation
Indices: 36837079--36837224 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
36837069 GCTACTCATT
*
36837079 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
36837119 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
36837159 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
36837200 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36837225 AATCATTCGA
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.03
40 76 0.84
41 12 0.13
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36842040 original size:27 final size:26
Alignment explanation
Indices: 36842010--36842071 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 26
36842000 TTTAAAACCC
36842010 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATATCGGTAATTTTGCTC-T
*
36842037 TAGGGGTAATTTCGGTAATTTTGCTCT
1 TAGGGGT-ATATCGGTAATTTTGCTCT
36842064 TAGGGGTA
1 TAGGGGTA
36842072 ATTTCGTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 1 0.03
27 15 0.45
28 17 0.52
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (26 bp):
TAGGGGTATATCGGTAATTTTGCTCT
Found at i:36842074 original size:27 final size:28
Alignment explanation
Indices: 36842010--36842077 Score: 113
Period size: 27 Copynumber: 2.5 Consensus size: 28
36842000 TTTAAAACCC
*
36842010 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
36842037 TAGGGGTAATTTCGGTAATTTTGCTC-T
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
36842064 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
36842078 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:36846306 original size:27 final size:26
Alignment explanation
Indices: 36846276--36846337 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 26
36846266 TTTAAAACCC
36846276 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATATCGGTAATTTTGCTC-T
*
36846303 TAGGGGTAATTTCGGTAATTTTGCTCT
1 TAGGGGT-ATATCGGTAATTTTGCTCT
36846330 TAGGGGTA
1 TAGGGGTA
36846338 ATTTCGTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 1 0.03
27 15 0.45
28 17 0.52
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (26 bp):
TAGGGGTATATCGGTAATTTTGCTCT
Found at i:36846340 original size:27 final size:28
Alignment explanation
Indices: 36846276--36846343 Score: 113
Period size: 27 Copynumber: 2.5 Consensus size: 28
36846266 TTTAAAACCC
*
36846276 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
36846303 TAGGGGTAATTTCGGTAATTTTGCTC-T
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
36846330 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
36846344 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:36853750 original size:30 final size:29
Alignment explanation
Indices: 36853714--36853777 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
36853704 ATGAATCGAA
*
36853714 AGCTTTGGCACTAAATGTGGGATTTAAACT
1 AGCTTTGGCACTAAATGTGCGATTT-AACT
*
36853744 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAATGTGCGATTTAACT
36853773 AGCTT
1 AGCTT
36853778 CGAATACCTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAATGTGCGATTTAACT
Found at i:36856144 original size:40 final size:40
Alignment explanation
Indices: 36856099--36856265 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
36856089 CGGAATATAA
36856099 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
36856139 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
36856179 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
36856219 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
36856258 CCGGATAT
1 CCGGATAT
36856266 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:36864147 original size:40 final size:40
Alignment explanation
Indices: 36864102--36864268 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
36864092 CGGAATATAA
36864102 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
36864142 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
36864182 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
36864222 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
36864261 CCGGATAT
1 CCGGATAT
36864269 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:36868184 original size:34 final size:34
Alignment explanation
Indices: 36868146--36868214 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
36868136 CAAAAGAGTC
36868146 AAATGAGGGGAAAAACAAAAGGGATTTCGGCTAA
1 AAATGAGGGGAAAAACAAAAGGGATTTCGGCTAA
36868180 AAATGAGGGGAAAAACAAAAGGGATTTCGGCTAA
1 AAATGAGGGGAAAAACAAAAGGGATTTCGGCTAA
36868214 A
1 A
36868215 GCAACTCGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.48, C:0.09, G:0.29, T:0.14
Consensus pattern (34 bp):
AAATGAGGGGAAAAACAAAAGGGATTTCGGCTAA
Found at i:36878940 original size:27 final size:26
Alignment explanation
Indices: 36878910--36878971 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 26
36878900 TTTAAAACCC
36878910 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATATCGGTAATTTTGCTC-T
*
36878937 TAGGGGTAATTTCGGTAATTTTGCTCT
1 TAGGGGT-ATATCGGTAATTTTGCTCT
36878964 TAGGGGTA
1 TAGGGGTA
36878972 ATTTCGTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 1 0.03
27 15 0.45
28 17 0.52
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (26 bp):
TAGGGGTATATCGGTAATTTTGCTCT
Found at i:36878974 original size:27 final size:28
Alignment explanation
Indices: 36878910--36878977 Score: 113
Period size: 27 Copynumber: 2.5 Consensus size: 28
36878900 TTTAAAACCC
*
36878910 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
36878937 TAGGGGTAATTTCGGTAATTTTGCTC-T
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
36878964 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
36878978 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:36880809 original size:19 final size:18
Alignment explanation
Indices: 36880772--36880815 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
36880762 ATACATACAG
36880772 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
36880789 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
36880808 TACTAATT
1 TAATAATT
36880816 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:36884019 original size:18 final size:18
Alignment explanation
Indices: 36883992--36884026 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
36883982 ATACGGCCCA
*
36883992 TGTGGGCCAACAAGCTCG
1 TGTGGCCCAACAAGCTCG
36884010 TGTGGCCCAACAAGCTC
1 TGTGGCCCAACAAGCTC
36884027 AAATAATGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (18 bp):
TGTGGCCCAACAAGCTCG
Found at i:36888977 original size:21 final size:22
Alignment explanation
Indices: 36888935--36888977 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
36888925 TCCCTATGCA
* *
36888935 ACATGTCATGCCATAATATCAT
1 ACATGTCATGCAAAAATATCAT
*
36888957 ACATGT-ATGCAAAAATGTCAT
1 ACATGTCATGCAAAAATATCAT
36888978 CCTCGATTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.30
Consensus pattern (22 bp):
ACATGTCATGCAAAAATATCAT
Found at i:36894208 original size:59 final size:58
Alignment explanation
Indices: 36894112--36894243 Score: 246
Period size: 59 Copynumber: 2.3 Consensus size: 58
36894102 AAAATTGTAC
36894112 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
36894170 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
36894229 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36894244 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:36894232 original size:88 final size:89
Alignment explanation
Indices: 36894082--36894243 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
36894072 GACAAGATTG
* * *
36894082 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
36894147 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
36894171 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
36894235 AAGTGTGCG
66 AAGTGTGCG
36894244 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:36894255 original size:29 final size:29
Alignment explanation
Indices: 36894112--36894243 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
36894102 AAAATTGTAC
*
36894112 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
36894141 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
36894170 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
36894200 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
36894229 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36894244 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:36897261 original size:29 final size:29
Alignment explanation
Indices: 36897228--36897301 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
36897218 GTGACGAGAT
36897228 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
36897257 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
36897286 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36897302 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:36897317 original size:29 final size:29
Alignment explanation
Indices: 36897285--36897360 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
36897275 CTGGAAATAT
* *
36897285 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
36897314 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
36897343 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
36897361 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:36897328 original size:58 final size:58
Alignment explanation
Indices: 36897228--36897360 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
36897218 GTGACGAGAT
* * * * * *
36897228 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
36897286 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
36897344 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
36897361 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:36905138 original size:29 final size:29
Alignment explanation
Indices: 36905105--36905178 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
36905095 GTGACGAGAT
36905105 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
36905134 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
36905163 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36905179 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Done.