Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 123 of 292
Found at i:36905194 original size:29 final size:29
Alignment explanation
Indices: 36905162--36905237 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
36905152 CTGGAAATAT
* *
36905162 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
36905191 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
36905220 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
36905238 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:36905205 original size:58 final size:58
Alignment explanation
Indices: 36905105--36905237 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
36905095 GTGACGAGAT
* * * * * *
36905105 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
36905163 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
36905221 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
36905238 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:36909660 original size:41 final size:44
Alignment explanation
Indices: 36909602--36909724 Score: 135
Period size: 45 Copynumber: 2.8 Consensus size: 44
36909592 ATGCTATCCC
* * * * * *
36909602 ATATCGATGCCACTGTCCTAGACAAGGTCTTACACGAATCA-A-
1 ATATCGATGTCAATGTCCAAAACATGGTCTTACACGAACCACAT
*
36909644 ATA-CGATGTCGATGTCCAAAACATGGTCTTACACGTAACCACAT
1 ATATCGATGTCAATGTCCAAAACATGGTCTTACACG-AACCACAT
* *
36909688 ATATCGATGTCAACGTCCCAAACATGGTCTTACACGA
1 ATATCGATGTCAATGTCCAAAACATGGTCTTACACGA
36909725 GAACACATGC
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 26 0.39
42 7 0.10
43 1 0.01
44 4 0.06
45 29 0.43
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.24
Consensus pattern (44 bp):
ATATCGATGTCAATGTCCAAAACATGGTCTTACACGAACCACAT
Found at i:36910859 original size:14 final size:15
Alignment explanation
Indices: 36910842--36910870 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36910832 TCACAAAAAT
36910842 TTCACACAT-ATAAA
1 TTCACACATAATAAA
36910856 TTCACACATAATAAA
1 TTCACACATAATAAA
36910871 CATAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:36911207 original size:15 final size:15
Alignment explanation
Indices: 36911175--36911203 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36911165 ATTTTCTGTG
36911175 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
36911190 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
36911204 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:36916171 original size:13 final size:13
Alignment explanation
Indices: 36916153--36916178 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36916143 AATACTGACT
36916153 TTAAAACATGGCC
1 TTAAAACATGGCC
36916166 TTAAAACATGGCC
1 TTAAAACATGGCC
36916179 ATGGCACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (13 bp):
TTAAAACATGGCC
Found at i:36918199 original size:39 final size:39
Alignment explanation
Indices: 36918081--36918263 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
36918071 TCATTCAAAC
* * ** * **
36918081 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
36918121 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
36918161 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
*
36918200 GCCTTCAGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
36918239 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
36918264 CTCGAACATT
Statistics
Matches: 124, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 86 0.69
40 38 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:36920469 original size:47 final size:44
Alignment explanation
Indices: 36920367--36920579 Score: 214
Period size: 47 Copynumber: 4.6 Consensus size: 44
36920357 TATACGTGCT
* * *
36920367 GATGCATGTCCTAGACATGTCTTACACTAGCA-CAACTCTTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCATCATCTC-TAGCC
* *
36920411 GATGCATGTCCCAGACAAGTCTTACACTGGCTATCATCGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ATCATC-TCTA-GCC
* *
36920458 GATGCATGTCCCAAACATGTCTTACACTGGCACTCATCTCTACACC
1 GATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCTCTA-GCC
**
36920504 GATGCCATGTCCCAGACATTGTCTTACACTGGCACTCAT-AATATGCCC
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCA-TCATCTCTA-G-CC
* *
36920552 GATTCATGTCCTAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
36920580 AGCCCACAAG
Statistics
Matches: 144, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
44 28 0.19
45 1 0.01
46 25 0.17
47 65 0.45
48 25 0.17
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCTAGCC
Found at i:36920560 original size:94 final size:90
Alignment explanation
Indices: 36920367--36920582 Score: 249
Period size: 94 Copynumber: 2.3 Consensus size: 90
36920357 TATACGTGCT
*
36920367 GATGCATGTCCTAGACATGTCTTACACTAGCACAACTCTTAGCCGATGCATGTCCCAGACAAGTC
1 GATGCATGTCCTAGACATGTCTTACACTAGCACAACTCTTAACCGATGCATGTCCCAGACAAGTC
** *
36920432 TTACACTGGCTATCATCGTCGAGGCC
66 TTACACTGGCTATCATAATC-AGCCC
* * * *
36920458 GATGCATGTCCCAAACATGTCTTACACTGGCAC-TCATCTCTACACCGATGCCATGTCCCAGACA
1 GATGCATGTCCTAGACATGTCTTACACTAGCACAAC-TCT-TA-ACCGATG-CATGTCCCAGACA
*
36920522 TTGTCTTACACTGGC-ACTCATAAT-ATGCCC
62 -AGTCTTACACTGGCTA-TCATAATCA-GCCC
*
36920552 GATTCATGTCCTAGACATGTCTTACACTAGC
1 GATGCATGTCCTAGACATGTCTTACACTAGC
36920583 CCACAAGAAA
Statistics
Matches: 105, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
90 1 0.01
91 33 0.31
92 2 0.02
93 7 0.07
94 44 0.42
95 18 0.17
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (90 bp):
GATGCATGTCCTAGACATGTCTTACACTAGCACAACTCTTAACCGATGCATGTCCCAGACAAGTC
TTACACTGGCTATCATAATCAGCCC
Found at i:36925951 original size:27 final size:27
Alignment explanation
Indices: 36925921--36926002 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
36925911 ATTACCCCTA
36925921 TAGGGTAGAATTATCGAAATACCCTTG
1 TAGGGTAGAATTATCGAAATACCCTTG
* * *
36925948 TAGGGTAGAAATAAT-GAAATACCCCTA
1 TAGGGTAG-AATTATCGAAATACCCTTG
* *
36925975 TAGGGTAGAATTACCGAGATACCCTTG
1 TAGGGTAGAATTATCGAAATACCCTTG
36926002 T
1 T
36926003 GGGGAAAAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
26 4 0.09
27 36 0.80
28 5 0.11
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (27 bp):
TAGGGTAGAATTATCGAAATACCCTTG
Found at i:36926028 original size:54 final size:54
Alignment explanation
Indices: 36925913--36926017 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 54
36925903 TTTACAGAAT
* * * **
36925913 TACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATAATGAAA
1 TACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGGAAAAATAACCAAA
* *
36925967 TACCCCTATAGGGTAGAATTACCGAGATACCCTTGT-GGGGAAAAATTACCA
1 TACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGGAAAAATAACCA
36926018 TTTTGCCCCT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 10 0.23
54 34 0.77
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (54 bp):
TACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGGAAAAATAACCAAA
Found at i:36927446 original size:27 final size:27
Alignment explanation
Indices: 36927105--36927444 Score: 411
Period size: 27 Copynumber: 12.6 Consensus size: 27
36927095 AAAGTACTCC
36927105 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
36927132 C-AGGTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
36927159 TGATTCGTA-A-AATTACCGTTTTACCCT
1 CGATT--TACAGAATTACCGTTTTACCCT
36927186 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
36927213 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
36927240 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
36927266 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
36927294 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
36927321 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
36927348 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
36927375 CGATTTATAGAATTACTGTTTCACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
36927402 TGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
36927429 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
36927445 TAAAATACCC
Statistics
Matches: 272, Mismatches: 31, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.01
26 4 0.01
27 260 0.96
28 4 0.01
29 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:36927468 original size:27 final size:27
Alignment explanation
Indices: 36927423--36927508 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 27
36927413 ATTACTATTT
* ** *
36927423 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCAATTTGTAAAATTACCAAAA
* * * **
36927450 TACCCTTAGTTTGTGAAATTACCGCAA
1 TACCCTCAATTTGTAAAATTACCAAAA
*
36927477 TACCCTCAATTTGTAAAACTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAA
36927504 TACCC
1 TACCC
36927509 CTTATGGTAA
Statistics
Matches: 44, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.38, C:0.26, G:0.07, T:0.29
Consensus pattern (27 bp):
TACCCTCAATTTGTAAAATTACCAAAA
Found at i:36928778 original size:9 final size:9
Alignment explanation
Indices: 36928766--36928822 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
36928756 TTTGATAAAC
36928766 ATGATATGT
1 ATGATATGT
*
36928775 ATGATATGCAC
1 ATGATATG--T
*
36928786 ATGACATGT
1 ATGATATGT
*
36928795 ATGATATGCAC
1 ATGATATG--T
36928806 ATGATATGT
1 ATGATATGT
36928815 ATGATATG
1 ATGATATG
36928823 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:36928789 original size:20 final size:20
Alignment explanation
Indices: 36928764--36928826 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
36928754 ATTTTGATAA
36928764 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36928784 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
36928804 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
36928824 ACA
1 ACA
36928827 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36928911 original size:23 final size:24
Alignment explanation
Indices: 36928880--36929044 Score: 221
Period size: 23 Copynumber: 7.0 Consensus size: 24
36928870 GAGGAAGTGA
36928880 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
36928903 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
36928927 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
36928951 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
36928974 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
36928998 AAAAGGGCTT-TTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
36929021 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36929045 ATGATAAAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
23 60 0.47
24 59 0.46
25 8 0.06
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:36928936 original size:24 final size:23
Alignment explanation
Indices: 36928880--36929045 Score: 219
Period size: 24 Copynumber: 7.0 Consensus size: 23
36928870 GAGGAAGTGA
36928880 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
36928903 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
36928926 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
36928950 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
36928974 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
36928997 AAAAAGGGCTT-TTCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
36929021 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36929045 A
1 A
36929046 TGATAAAGCA
Statistics
Matches: 128, Mismatches: 9, Indels: 11
0.86 0.06 0.07
Matches are distributed among these distances:
23 59 0.46
24 62 0.48
25 7 0.05
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:36928996 original size:71 final size:70
Alignment explanation
Indices: 36928880--36929044 Score: 251
Period size: 71 Copynumber: 2.3 Consensus size: 70
36928870 GAGGAAGTGA
* *
36928880 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTT-TGCCCCA
36928945 GTTATC
65 GTTATC
*
36928951 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTCCCCAG
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTGCCCCAG
*
36929016 TTATT
66 TTATC
*
36929021 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
36929045 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
70 21 0.24
71 66 0.76
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (70 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTGCCCCAG
TTATC
Found at i:36929270 original size:31 final size:31
Alignment explanation
Indices: 36929235--36929298 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36929225 CGTTTACCGT
*
36929235 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
36929266 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36929297 AA
1 AA
36929299 TATTAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36930609 original size:27 final size:27
Alignment explanation
Indices: 36930579--36930662 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 27
36930569 ATTCTGTTAA
* * *
36930579 GTGGCTTTTCCATATTATCTGTTTCTG
1 GTGGCTATACCATAATATCTGTTTCTG
*
36930606 GTGGCTATGCAACA-AATATCTG-TTCTG
1 GTGGCTAT--ACCATAATATCTGTTTCTG
*
36930633 GTGGCTCTACCATAATATCTGTATT-TG
1 GTGGCTATACCATAATATCTGT-TTCTG
36930660 GTG
1 GTG
36930663 ACTCTGTTAC
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
25 3 0.07
26 8 0.17
27 24 0.52
28 9 0.20
29 2 0.04
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (27 bp):
GTGGCTATACCATAATATCTGTTTCTG
Found at i:36930637 original size:54 final size:53
Alignment explanation
Indices: 36930579--36930686 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 53
36930569 ATTCTGTTAA
* * * *
36930579 GTGGCTTTTCCATATTATCTGT-TTCTGGTGGCTATGCAACAAATATCTGTTCTG
1 GTGGCTCTACCATAATATCTGTATT-TGGTGACTATGCAAC-AATATCTGTTCTG
* **
36930633 GTGGCTCTACCATAATATCTGTATTTGGTGACTCTGTTACAATATCTGTTCTG
1 GTGGCTCTACCATAATATCTGTATTTGGTGACTATGCAACAATATCTGTTCTG
36930686 G
1 G
36930687 CAGTCATGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
53 14 0.30
54 30 0.65
55 2 0.04
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.42
Consensus pattern (53 bp):
GTGGCTCTACCATAATATCTGTATTTGGTGACTATGCAACAATATCTGTTCTG
Found at i:36930813 original size:6 final size:6
Alignment explanation
Indices: 36930804--36930903 Score: 71
Period size: 6 Copynumber: 16.3 Consensus size: 6
36930794 TTGCATTCAC
* * * * *
36930804 ATTCTG ATTCTG AGTCTG -TTACCTA ATACTG ATTCTG ATTCTG -TCACATA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT-TC-TG
* *
36930854 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
36930902 AT
1 AT
36930904 AATGTTTCTT
Statistics
Matches: 72, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
5 3 0.04
6 62 0.86
7 5 0.07
8 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:36930835 original size:25 final size:25
Alignment explanation
Indices: 36930807--36930871 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
36930797 CATTCACATT
* * *
36930807 CTGATTCTGAGTCTGTTACCTAATA
1 CTGATTCTGATTCTGTCACATAATA
*
36930832 CTGATTCTGATTCTGTCACATAATT
1 CTGATTCTGATTCTGTCACATAATA
36930857 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
36930872 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACATAATA
Found at i:36933140 original size:30 final size:30
Alignment explanation
Indices: 36933038--36933132 Score: 158
Period size: 29 Copynumber: 3.2 Consensus size: 30
36933028 GTGACGAGAT
36933038 TGGCACTAAGTGTGCATGCT-GAAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAATATA
36933067 TGGCACTAAGTGTGCATGCTGG-AAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAATATA
*
36933096 TGGCACTAAGTGTGCATGCTGGAAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAATATA
*
36933126 CGGCACT
1 TGGCACT
36933133 GGGTGTGCGA
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
29 49 0.79
30 13 0.21
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (30 bp):
TGGCACTAAGTGTGCATGCTGGAAAATATA
Found at i:36933157 original size:59 final size:58
Alignment explanation
Indices: 36933034--36933169 Score: 159
Period size: 59 Copynumber: 2.3 Consensus size: 58
36933024 TACGGTGACG
* * *
36933034 AGAT-TGGCACTAAGTGTGCATGCTGAAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
36933091 ATATATGGCACTAAGTGTGCATGCTGGAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCT-GAAAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
36933150 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
36933170 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
57 3 0.05
58 20 0.30
59 42 0.64
60 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGAAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:36936378 original size:26 final size:27
Alignment explanation
Indices: 36936258--36936391 Score: 180
Period size: 27 Copynumber: 5.0 Consensus size: 27
36936248 CAAAATTATT
*
36936258 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* * * *
36936285 GAAATACCCCTATAGGATAGAATTATC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
36936312 GAAATACCCTAGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
36936339 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
36936366 G-AATACCCTTGTAGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
36936392 ATTTTGCCCC
Statistics
Matches: 91, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 23 0.25
27 68 0.75
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:36937057 original size:28 final size:27
Alignment explanation
Indices: 36937002--36937059 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
36936992 ATTCTGTTAA
* * * *
36937002 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTATATCTG
36937029 GTGGCTATGCCACAAATATCTATATCTG
1 GTGGCTATGCCAC-AATATCTATATCTG
36937057 GTG
1 GTG
36937060 ACTCTATTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 12 0.46
28 14 0.54
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTATATCTG
Found at i:36937266 original size:25 final size:25
Alignment explanation
Indices: 36937211--36937268 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
36937201 ATTCTGATTC
* *
36937211 TGATTCTGTTACCTAATGCTAATTC
1 TGATTCTGTCACCTAATGCTAATTA
* ** *
36937236 TAATTCTGTCACCTAATTTTATTTA
1 TGATTCTGTCACCTAATGCTAATTA
36937261 TGATTCTG
1 TGATTCTG
36937269 ATTCTGATTC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.17, G:0.10, T:0.48
Consensus pattern (25 bp):
TGATTCTGTCACCTAATGCTAATTA
Found at i:36938757 original size:18 final size:17
Alignment explanation
Indices: 36938728--36938772 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 17
36938718 TGGCTACTTC
36938728 GGGCCGCAATGGGCC-AT
1 GGGCC-CAATGGGCCTAT
36938745 GTCGGCCCAATGGGCCTAT
1 G--GGCCCAATGGGCCTAT
36938764 GGGCCCAAT
1 GGGCCCAAT
36938773 TGGATAAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 9 0.36
18 9 0.36
19 7 0.28
ACGTcount: A:0.18, C:0.31, G:0.36, T:0.16
Consensus pattern (17 bp):
GGGCCCAATGGGCCTAT
Found at i:36939499 original size:27 final size:27
Alignment explanation
Indices: 36939469--36939576 Score: 105
Period size: 27 Copynumber: 4.0 Consensus size: 27
36939459 ATTCTGTTAA
*
36939469 GTGGCTTTGCAACATTATCTGTTTCTG
1 GTGGCTTTGCAACAATATCTGTTTCTG
* *
36939496 GTGGCTATGCCAAAAATATCTG-TTCTG
1 GTGGCTTTG-CAACAATATCTGTTTCTG
* * *
36939523 GTGGCTTTGCCACAATATTTGTATCTG
1 GTGGCTTTGCAACAATATCTGTTTCTG
* *
36939550 GTGACTCTGTC-ACAATATCTG-TTCTG
1 GTGGCTTTG-CAACAATATCTGTTTCTG
36939576 G
1 G
36939577 CAGCCATGCT
Statistics
Matches: 66, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
26 14 0.21
27 41 0.62
28 11 0.17
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.39
Consensus pattern (27 bp):
GTGGCTTTGCAACAATATCTGTTTCTG
Found at i:36939527 original size:54 final size:53
Alignment explanation
Indices: 36939469--36939576 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 53
36939459 ATTCTGTTAA
* * *
36939469 GTGGCTTTGCAACATTATCTGTTTCTGGTGGCTATGCCAAAAATATCTGTTCTG
1 GTGGCTTTGCAACAATATCTGTATCTGGTGACTATGCC-AAAATATCTGTTCTG
* * * * *
36939523 GTGGCTTTGCCACAATATTTGTATCTGGTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTTTGCAACAATATCTGTATCTGGTGACTATGCCAAAATATCTGTTCTG
36939576 G
1 G
36939577 CAGCCATGCT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
53 15 0.33
54 31 0.67
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.39
Consensus pattern (53 bp):
GTGGCTTTGCAACAATATCTGTATCTGGTGACTATGCCAAAATATCTGTTCTG
Found at i:36939703 original size:6 final size:6
Alignment explanation
Indices: 36939694--36939880 Score: 100
Period size: 6 Copynumber: 30.3 Consensus size: 6
36939684 TTGCATTCAC
* * * *
36939694 ATTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTTTG ATTCT- ATCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
36939744 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- ATTACCTG ATACTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * *
36939793 ATTCTG -TCACCTA ATTTTG ATTCTA ATTTTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
36939843 ATTCTG ATTCTG ATTCT- AATCTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTC-TG ATTCTG A-TTCTG AT
36939881 AATGTTTCTT
Statistics
Matches: 137, Mismatches: 25, Indels: 38
0.69 0.12 0.19
Matches are distributed among these distances:
5 13 0.09
6 101 0.74
7 16 0.12
8 7 0.05
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:36939725 original size:25 final size:25
Alignment explanation
Indices: 36939697--36939761 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
36939687 CATTCACATT
* * *
36939697 CTGATTCTGATTCTGTTACTTGATA
1 CTGATTCTGATTCTGTCACCTAATA
* * *
36939722 CTGATTTTGATTCTATCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
36939747 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
36939762 ATTCTGATTC
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:36939763 original size:37 final size:37
Alignment explanation
Indices: 36939717--36939798 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
36939707 TTCTGTTACT
* * *
36939717 TGATACTGATTTTGATTCTATCACCTAATTCTGATTC
1 TGATTCTGATTCTGATTCTATCACCTAATACTGATTC
* * *
36939754 TGATTCTGATTCTGATTCTATTACCTGATACTGATTT
1 TGATTCTGATTCTGATTCTATCACCTAATACTGATTC
36939791 TGATTCTG
1 TGATTCTG
36939799 TCACCTAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTATCACCTAATACTGATTC
Found at i:36939781 original size:25 final size:25
Alignment explanation
Indices: 36939753--36939816 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
36939743 AATTCTGATT
*
36939753 CTGATTCTGATTCTGATTCTATTAC
1 CTGATTCTGATTCTGATTCTATCAC
* * *
36939778 CTGATACTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTATCAC
* *
36939803 CTAATTTTGATTCT
1 CTGATTCTGATTCT
36939817 AATTTTGATT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTATCAC
Found at i:36939791 original size:62 final size:62
Alignment explanation
Indices: 36939694--36939860 Score: 253
Period size: 62 Copynumber: 2.7 Consensus size: 62
36939684 TTGCATTCAC
* *
36939694 ATTCTGATTCTGATTCTGTTACTTGATACTGATTTTGATTCTATCACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTTTGATTCTATCACCTAATTCTGATTCTA
* * *
36939756 ATTCTGATTCTGATTCTATTACCTGATACTGATTTTGATTCTGTCACCTAATTTTGATTCTA
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTTTGATTCTATCACCTAATTCTGATTCTA
* * * *
36939818 ATTTTGATTCTGATTCTGTCACCTGATTCTGATTCTGATTCTA
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTTTGATTCTA
36939861 ATCTTGATTC
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 94 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.49
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTGATTTTGATTCTATCACCTAATTCTGATTCTA
Found at i:36939826 original size:37 final size:37
Alignment explanation
Indices: 36939784--36939871 Score: 113
Period size: 37 Copynumber: 2.4 Consensus size: 37
36939774 TTACCTGATA
*
36939784 CTGATTTTGATTCTGTCACCTAATTTTGATTCTAATT
1 CTGATTTTGATTCTGTCACCTAATTCTGATTCTAATT
* * * *
36939821 TTGATTCTGATTCTGTCACCTGATTCTGATTCTGATT
1 CTGATTTTGATTCTGTCACCTAATTCTGATTCTAATT
* *
36939858 CTAATCTTGATTCT
1 CTGATTTTGATTCT
36939872 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.50
Consensus pattern (37 bp):
CTGATTTTGATTCTGTCACCTAATTCTGATTCTAATT
Found at i:36939829 original size:31 final size:31
Alignment explanation
Indices: 36939717--36939829 Score: 115
Period size: 31 Copynumber: 3.6 Consensus size: 31
36939707 TTCTGTTACT
*
36939717 TGATACTGATTTTGATTCTATCACCTAATTC
1 TGATACTGATTTTGATTCTGTCACCTAATTC
* * *
36939748 TGATTCTGATTCTGATTCTG--ATTCT-ATTACC
1 TGATACTGATTTTGATTCTGTCA-CCTAATT--C
*
36939779 TGATACTGATTTTGATTCTGTCACCTAATTT
1 TGATACTGATTTTGATTCTGTCACCTAATTC
* *
36939810 TGATTCTAATTTTGATTCTG
1 TGATACTGATTTTGATTCTG
36939830 ATTCTGTCAC
Statistics
Matches: 66, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
29 4 0.06
30 2 0.03
31 54 0.82
32 2 0.03
33 4 0.06
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.49
Consensus pattern (31 bp):
TGATACTGATTTTGATTCTGTCACCTAATTC
Found at i:36940925 original size:31 final size:31
Alignment explanation
Indices: 36940887--36940948 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
36940877 ATTCTATACA
36940887 GAGCTATCGATATCGGAGTCGTCCTCGGTAC
1 GAGCTATCGATATCGGAGTCGTCCTCGGTAC
36940918 GAGCTATCGATATCGGAGTCGTCCTCGGTAC
1 GAGCTATCGATATCGGAGTCGTCCTCGGTAC
36940949 TAACTCAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (31 bp):
GAGCTATCGATATCGGAGTCGTCCTCGGTAC
Found at i:36950595 original size:45 final size:46
Alignment explanation
Indices: 36950482--36950717 Score: 204
Period size: 50 Copynumber: 4.9 Consensus size: 46
36950472 GGTAGGGTGT
* * * * * * *
36950482 CGATGCCATGTTCCGGATATGGTCTTACATTGGCTCACACATCAAAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-ACTCACATATC-AAGC
* *
36950530 CGATGCCATGTCCTAGACATGGTCTTACACTA-ACACATATCAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTACTCACATATCAAGC
* * * *
36950575 CGATGCCATGTCTCAAACATGGTCTTACACTAGCTCTCATATCTTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTA-CTCACATATC---AAGC
* * * *
36950625 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAGATCTCGAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTA---CTCACATATCAAG-C
*
36950675 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
1 CGATGCCATGTCCCAGACATGGTCTTACACTA-CTCACATATC
36950718 TCCCTAGTAT
Statistics
Matches: 151, Mismatches: 29, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
45 32 0.21
46 7 0.05
47 7 0.05
48 33 0.22
49 1 0.01
50 64 0.42
52 7 0.05
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTACTCACATATCAAGC
Found at i:36950719 original size:50 final size:50
Alignment explanation
Indices: 36950528--36950719 Score: 259
Period size: 50 Copynumber: 3.9 Consensus size: 50
36950518 ACACATCAAA
* * * *
36950528 ACCGATGCCATGTCCTAGACATGGTCTTACACTA--ACACATA--TCAAG
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
* * *
36950574 -CCGATGCCATGTCTCAAACATGGTCTTACACTAGCTCTCATATCTTGAG
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
* * *
36950623 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAGATCTCGAG
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
36950673 ACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
36950720 CCTAGTATCA
Statistics
Matches: 126, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
45 30 0.24
47 5 0.04
49 3 0.02
50 88 0.70
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (50 bp):
ACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
Found at i:36955616 original size:20 final size:21
Alignment explanation
Indices: 36955593--36955652 Score: 97
Period size: 20 Copynumber: 3.0 Consensus size: 21
36955583 TAAACATGGT
36955593 ATGTATGATATGCACATGA-C
1 ATGTATGATATGCACATGATC
*
36955613 ATGTATGATATGCACAT-ATT
1 ATGTATGATATGCACATGATC
36955633 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAT
36955653 GTATTCATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
19 1 0.03
20 34 0.92
21 2 0.05
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (21 bp):
ATGTATGATATGCACATGATC
Found at i:36955758 original size:24 final size:23
Alignment explanation
Indices: 36955702--36955848 Score: 204
Period size: 24 Copynumber: 6.2 Consensus size: 23
36955692 GAGGAAGTGA
*
36955702 AAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
36955725 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
36955748 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
36955772 CAAAATGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
36955796 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
36955819 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
36955844 AAAAG
1 AAAAG
36955849 AGGCAAGGCC
Statistics
Matches: 111, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
23 41 0.37
24 69 0.62
25 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:36955771 original size:47 final size:47
Alignment explanation
Indices: 36955702--36955848 Score: 206
Period size: 47 Copynumber: 3.1 Consensus size: 47
36955692 GAGGAAGTGA
* *
36955702 AAAAGGGCTTATGCCCTAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * *
36955748 CAAAAGGGCTTATGCCCCAGTTATCAAAATGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
36955796 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
36955844 AAAAG
1 AAAAG
36955849 AGGCAAGGCC
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
47 63 0.72
48 25 0.28
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:36955824 original size:71 final size:71
Alignment explanation
Indices: 36955702--36955848 Score: 240
Period size: 71 Copynumber: 2.1 Consensus size: 71
36955692 GAGGAAGTGA
* * *
36955702 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
36955767 GTTATC
66 GTTATC
* *
36955773 AAAATGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
36955838 GTTATT
66 GTTATC
36955844 AAAAG
1 AAAAG
36955849 AGGCAAGGCC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:36956114 original size:31 final size:31
Alignment explanation
Indices: 36956060--36956123 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
36956050 CGTTTACAGT
*
36956060 AAAGGCTTCGGCCCAGAAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGAAATATGAAATATGA
***
36956091 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGAAATATGAAATATGA
36956122 AA
1 AA
36956124 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGAAATATGAAATATGA
Found at i:36968656 original size:39 final size:40
Alignment explanation
Indices: 36968612--36968777 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 40
36968602 CGGAATATAA
*
36968612 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
36968651 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
36968691 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
36968731 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
36968770 CCGGATAT
1 CCGGATAT
36968778 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 25 0.24
40 79 0.76
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:36976620 original size:31 final size:31
Alignment explanation
Indices: 36976582--36976645 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
36976572 CCTTTTCATA
36976582 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
36976613 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
36976644 TT
1 TT
36976646 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:36976890 original size:24 final size:24
Alignment explanation
Indices: 36976852--36976979 Score: 179
Period size: 24 Copynumber: 5.4 Consensus size: 24
36976842 CTGGAGGCCT
* *
36976852 AGCCTCTTTTAGTAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
**
36976877 AGCCCTTTTTGTAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
36976901 AGCCCTTTTAATCACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
36976925 AGCCC-TTTAATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
36976948 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
36976971 AGCCCTTTT
1 AGCCCTTTT
36976980 GCACTTCCTC
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
23 43 0.46
24 47 0.50
25 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:36976942 original size:23 final size:23
Alignment explanation
Indices: 36976859--36976978 Score: 168
Period size: 23 Copynumber: 5.1 Consensus size: 23
36976849 CCTAGCCTCT
* *
36976859 TTTAGTAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
**
36976882 TTTTTGTAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
36976906 TTTTAATCACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
36976930 TTTAATAATTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
36976953 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
36976976 TTT
1 TTT
36976979 TGCACTTCCT
Statistics
Matches: 88, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
23 46 0.52
24 42 0.48
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:36977057 original size:20 final size:20
Alignment explanation
Indices: 36977032--36977075 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
36977022 TGAACACCTA
36977032 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
36977052 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
36977072 ATGT
1 ATGT
36977076 TTATCAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:36979822 original size:29 final size:29
Alignment explanation
Indices: 36979790--36979881 Score: 134
Period size: 29 Copynumber: 3.2 Consensus size: 29
36979780 TGCCTAGTAA
36979790 GCCATATAGATGTGATTTGGGCCTAATGG
1 GCCATATAGATGTGATTTGGGCCTAATGG
*
36979819 GCCATATAGATGTGATTTGGGCCTAATAG
1 GCCATATAGATGTGATTTGGGCCTAATGG
* *
36979848 GCCATAT-GAATGAGA-TTGGGCCTAGTGG
1 GCCATATAG-ATGTGATTTGGGCCTAATGG
36979876 GCCATA
1 GCCATA
36979882 AGCATGTATA
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
28 18 0.31
29 40 0.69
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (29 bp):
GCCATATAGATGTGATTTGGGCCTAATGG
Found at i:36979853 original size:58 final size:56
Alignment explanation
Indices: 36979773--36979881 Score: 139
Period size: 57 Copynumber: 1.9 Consensus size: 56
36979763 GACTGTAAAA
* * *
36979773 GTGATTGTGCCTAGTAAGCCATAT-AGATGTGATTTGGGCCTAATGGGCCATATAGAT
1 GTGATTGGGCCTAATAAGCCATATGA-ATGAGA-TTGGGCCTAATGGGCCATATAGAT
* *
36979830 GTGATTTGGGCCTAATAGGCCATATGAATGAGATTGGGCCTAGTGGGCCATA
1 GTGA-TTGGGCCTAATAAGCCATATGAATGAGATTGGGCCTAATGGGCCATA
36979882 AGCATGTATA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
57 22 0.49
58 22 0.49
59 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (56 bp):
GTGATTGGGCCTAATAAGCCATATGAATGAGATTGGGCCTAATGGGCCATATAGAT
Found at i:36982017 original size:143 final size:144
Alignment explanation
Indices: 36981758--36982045 Score: 560
Period size: 143 Copynumber: 2.0 Consensus size: 144
36981748 TGATAAAGAG
*
36981758 TTGTCATTGATATGGAGTGTCAGAATCAATGCATGAATATGTGTGTTAGAGAACAACATATTGGA
1 TTGTCATTGATATGGAGTGTCAGAACCAATGCATGAATATGTGTGTTAGAGAACAACATATTGGA
36981823 CTGACCCGCTATGAGTATGTTTCTTGGATTATTATGTAATTGTCACAACATTACTCATAGTGATT
66 CTGACCCGCTATGAGTATGTTTCTTGGATTATTATGTAATTGTCACAACATTACTCATAGTGATT
36981888 AATATGTATATGAT
131 AATATGTATATGAT
36981902 TTGTCATTGATATGGAGTGTCAGAACCAATGCATGAATATGTGTGTTAGAGAAC-ACATATTGGA
1 TTGTCATTGATATGGAGTGTCAGAACCAATGCATGAATATGTGTGTTAGAGAACAACATATTGGA
36981966 CTGACCCGCTATGAGTATGTTTCTTGGATTATTATGTAATTGTCACAACATTACTCATAGTGATT
66 CTGACCCGCTATGAGTATGTTTCTTGGATTATTATGTAATTGTCACAACATTACTCATAGTGATT
36982031 AATATGTATATGAT
131 AATATGTATATGAT
36982045 T
1 T
36982046 CTCAGACTTG
Statistics
Matches: 143, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
143 90 0.63
144 53 0.37
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (144 bp):
TTGTCATTGATATGGAGTGTCAGAACCAATGCATGAATATGTGTGTTAGAGAACAACATATTGGA
CTGACCCGCTATGAGTATGTTTCTTGGATTATTATGTAATTGTCACAACATTACTCATAGTGATT
AATATGTATATGAT
Found at i:36985123 original size:12 final size:12
Alignment explanation
Indices: 36985097--36985131 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
36985087 TATCATTCGA
*
36985097 ATTTA-ATACAT
1 ATTTATATATAT
36985108 ATTTATATATAT
1 ATTTATATATAT
36985120 ATTTATATATAT
1 ATTTATATATAT
36985132 TGTAACACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 5 0.23
12 17 0.77
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTTATATATAT
Found at i:36986580 original size:40 final size:40
Alignment explanation
Indices: 36986508--36986692 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 40
36986498 AGATATAACC
* * ** * *
36986508 ACTCGCAC-AAGGCCGTCGGGTGTTAGCCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* *
36986547 ACTAGCACAAATGCCTTCGGGACTTAGCTCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* *
36986587 ACTCGCACAAATGCCTTTGGGACTTAGCCCGGAATTTGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
36986627 ACTTGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
36986667 ACTCGCACAAATGTCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
36986693 ACCTCGTTAG
Statistics
Matches: 125, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 7 0.06
40 116 0.93
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:36992811 original size:16 final size:16
Alignment explanation
Indices: 36992792--36992834 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
36992782 GCAAATCCTA
36992792 AAAAGCTAAAATACCG
1 AAAAGCTAAAATACCG
36992808 AAAAGCTAAAATACCG
1 AAAAGCTAAAATACCG
*
36992824 AAAAGCCAAAA
1 AAAAGCTAAAA
36992835 GTTTGGCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.60, C:0.19, G:0.12, T:0.09
Consensus pattern (16 bp):
AAAAGCTAAAATACCG
Found at i:36993095 original size:29 final size:28
Alignment explanation
Indices: 36993054--36993133 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
36993044 GACTGTAAAA
*
36993054 GTGATTGGGCCTAGTAGGCCATAT-AGAT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
*
36993082 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
* *
36993111 GAGACTGGGCCTAGTGGGCCATA
1 GTGATTGGGCCTAGTGGGCCATA
36993134 AGCATGTATG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 21 0.47
29 23 0.51
30 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:37012097 original size:25 final size:25
Alignment explanation
Indices: 37012071--37012169 Score: 72
Period size: 25 Copynumber: 4.0 Consensus size: 25
37012061 TATTAGTTCT
*
37012071 GACCCACAGCTCGTGTGAGCATACT
1 GACCCACAGCTCGTGTGAGCATACC
** * **
37012096 GACTTACAGTTCGTGAAAGCATACC
1 GACCCACAGCTCGTGTGAGCATACC
* ** *
37012121 GATCTTCAGCTCGAGTGAGCATACC
1 GACCCACAGCTCGTGTGAGCATACC
** * *
37012146 GATTCATAGCTCGTATGAGCATAC
1 GACCCACAGCTCGTGTGAGCATAC
37012170 ATGTACAAGA
Statistics
Matches: 55, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (25 bp):
GACCCACAGCTCGTGTGAGCATACC
Found at i:37014233 original size:25 final size:25
Alignment explanation
Indices: 37014204--37014251 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37014194 TTATAACATG
* * *
37014204 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
37014229 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
37014252 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:37014354 original size:20 final size:20
Alignment explanation
Indices: 37014288--37014354 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
37014278 ATTTTGATAA
*
37014288 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
37014308 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
37014328 ACATGATATGTATGTTATGC
1 ACATGATATGTATGATATGC
37014348 ACATGAT
1 ACATGAT
37014355 GTAATCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:37014482 original size:24 final size:24
Alignment explanation
Indices: 37014402--37014506 Score: 142
Period size: 23 Copynumber: 4.4 Consensus size: 24
37014392 GGAGGAAGTG
*
37014402 TAAAAGGGCTTGTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
37014426 T-AAAGGGCTTATTCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
37014449 T-AAAGGGCTTATGCCCCAATTTT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
37014472 TAAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
37014496 TAAAAGAGGCT
1 TAAAAG-GGCT
37014507 AGGCCTCTAG
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
23 41 0.58
24 26 0.37
25 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:37014496 original size:47 final size:46
Alignment explanation
Indices: 37014404--37014499 Score: 140
Period size: 47 Copynumber: 2.1 Consensus size: 46
37014394 AGGAAGTGTA
* *
37014404 AAAGGGCTTGTGCCCCAGTTATTAAAGGGCTTATTCCCCAGTTATT
1 AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATTCCCCAGTTATT
*
37014450 AAAGGGCTTATGCCCCAATTTTTAAAAGGGCTT-TTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAATTATT-AAAGGGCTTATT-CCCCAGTTATT
37014497 AAA
1 AAA
37014500 AGAGGCTAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
46 22 0.49
47 23 0.51
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATTCCCCAGTTATT
Found at i:37014749 original size:31 final size:31
Alignment explanation
Indices: 37014713--37014776 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
37014703 CGTTTACAGT
*
37014713 AAAGGCTTCGGCCTAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
37014744 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37014775 AA
1 AA
37014777 TCTGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:37017341 original size:44 final size:42
Alignment explanation
Indices: 37017272--37017419 Score: 131
Period size: 42 Copynumber: 3.5 Consensus size: 42
37017262 TGTGTTATCG
* *
37017272 TGTAAGACCACGTTTGGGACGTTGGCATCAATTTGTGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATC-ATTT-TGATTTACA
* * * * *
37017316 TGTAAGACCATGTCTGAGACATTGGCATCGTATATGATTT-CG
1 TGTAAGACCACGTCTGGGACATTGGCATCAT-TTTGATTTACA
* * *
37017358 TGTAAGACC-TGTCTGGGACAGTGGCATTGATATTTGA-TTACA
1 TGTAAGACCACGTCTGGGACATTGGCA-TCAT-TTTGATTTACA
*
37017400 TGTAAGACCACGTCTAGGAC
1 TGTAAGACCACGTCTGGGAC
37017420 GTTTGTATTG
Statistics
Matches: 85, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
41 17 0.20
42 27 0.32
43 15 0.18
44 26 0.31
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCATTTTGATTTACA
Found at i:37019309 original size:40 final size:40
Alignment explanation
Indices: 37019250--37019457 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
37019240 CAATTGAATG
* * * *
37019250 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
37019290 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
37019330 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37019370 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
37019410 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
37019450 ATATCCGG
1 ATATCCGG
37019458 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:37019388 original size:80 final size:80
Alignment explanation
Indices: 37019252--37019457 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
37019242 ATTGAATGAT
* * ** * * *
37019252 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
37019316 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
37019332 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
37019397 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
37019412 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
37019458 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:37027359 original size:40 final size:40
Alignment explanation
Indices: 37027300--37027507 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
37027290 CAATTGAATG
* * * *
37027300 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
37027340 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
37027380 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37027420 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
37027460 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
37027500 ATATCCGG
1 ATATCCGG
37027508 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:37027438 original size:80 final size:80
Alignment explanation
Indices: 37027302--37027507 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
37027292 ATTGAATGAT
* * ** * * *
37027302 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
37027366 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
37027382 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
37027447 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
37027462 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
37027508 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:37029110 original size:15 final size:15
Alignment explanation
Indices: 37029090--37029119 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37029080 TATGTGAATA
37029090 AAGGAATTATGGATG
1 AAGGAATTATGGATG
37029105 AAGGAATTATGGATG
1 AAGGAATTATGGATG
37029120 TTCGAGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.33, T:0.27
Consensus pattern (15 bp):
AAGGAATTATGGATG
Found at i:37034732 original size:29 final size:29
Alignment explanation
Indices: 37034642--37034801 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
37034632 ACTCCATTTC
* * *
37034642 GCACACTTAGTGCCATGTGATTT-AAGCCT
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
37034671 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** * *
37034699 CGCACACCCAATGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
*
37034729 GCACACTTAGTGCTATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37034758 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37034787 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
37034802 ATCTCGTCAC
Statistics
Matches: 108, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
28 3 0.03
29 104 0.96
30 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:37042625 original size:43 final size:42
Alignment explanation
Indices: 37042485--37042650 Score: 117
Period size: 43 Copynumber: 3.9 Consensus size: 42
37042475 TAGGATTTCG
* *
37042485 ATATGTATTATCATGTAAGACCACATCTGGGACATTGGCATCGAT
1 ATATG-ATTA-CATGTAAGACCACATCTAGGACAGTGGCATCG-T
* * ** ** * *
37042530 TTGTGATTTATGTGTAAGACCATGT-TTGG-GA-T-GCATCGT
1 ATATGA-TTACATGTAAGACCACATCTAGGACAGTGGCATCGT
*
37042569 ATATGATTTCATGTAAGACC-CTATCTAGGACAGTGGCATCGAT
1 ATATGATTACATGTAAGACCAC-ATCTAGGACAGTGGCATCG-T
* * *
37042612 ATTTGATTACATGTAAGACCACATCTGGGACATTGGCAT
1 ATATGATTACATGTAAGACCACATCTAGGACAGTGGCAT
37042651 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 21, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
38 12 0.13
39 8 0.09
40 7 0.08
41 2 0.02
42 7 0.08
43 37 0.40
44 13 0.14
45 6 0.07
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33
Consensus pattern (42 bp):
ATATGATTACATGTAAGACCACATCTAGGACAGTGGCATCGT
Found at i:37045690 original size:30 final size:30
Alignment explanation
Indices: 37045656--37045715 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
37045646 TTCCCGAGCC
37045656 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAA-TGTAATTATGCAAAAGTT
* *
37045686 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
37045716 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:37050680 original size:26 final size:27
Alignment explanation
Indices: 37050651--37050704 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
37050641 TCACACAAGT
*
37050651 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
37050677 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
37050704 T
1 T
37050705 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:37050844 original size:27 final size:27
Alignment explanation
Indices: 37050705--37050850 Score: 168
Period size: 27 Copynumber: 5.4 Consensus size: 27
37050695 GGGGCAAAAT
* ** *
37050705 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCTTACAAGGGTATTTC
* *
37050732 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCTTACAAGGGTATTTC
* *
37050759 GATATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCTTACAAGGGTATTTC
* *
37050786 GGTAATTCTATCC-TATAGGGGTATTTC
1 GGTAATTCTA-CCTTACAAGGGTATTTC
*
37050813 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCTTACAAGGGTATTTC
*
37050840 AGTAATTCTAC
1 GGTAATTCTAC
37050851 AACTTATCCA
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.02
27 101 0.96
28 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCTTACAAGGGTATTTC
Found at i:37056703 original size:2 final size:2
Alignment explanation
Indices: 37056696--37056727 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
37056686 ACCAGAACAA
37056696 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37056728 GTGTGGAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37056810 original size:27 final size:26
Alignment explanation
Indices: 37056762--37056813 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
37056752 GCGAGGCTGC
*
37056762 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
37056788 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
37056814 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:37057090 original size:16 final size:17
Alignment explanation
Indices: 37057069--37057102 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37057059 TTCCAAAGTG
37057069 GGCCCG-TTGGCCCATT
1 GGCCCGTTTGGCCCATT
37057085 GGCCCGTTTTGGCCCATT
1 GGCCCG-TTTGGCCCATT
37057103 AAGTCCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
18 10 0.62
ACGTcount: A:0.06, C:0.35, G:0.29, T:0.29
Consensus pattern (17 bp):
GGCCCGTTTGGCCCATT
Found at i:37057439 original size:26 final size:27
Alignment explanation
Indices: 37057410--37057463 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
37057400 TCACACAAGT
37057410 TAGTCATTT-ACACACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
37057436 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
37057463 T
1 T
37057464 GGTAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:37057494 original size:27 final size:27
Alignment explanation
Indices: 37057464--37057609 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
37057454 GGGGCAAAAT
* * *
37057464 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
37057491 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
37057518 GATATTTCTACCATACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
37057545 GGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
37057572 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
37057599 AGTAATTCTAC
1 GGTAATTCTAC
37057610 AACTTATCCA
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:37060660 original size:93 final size:93
Alignment explanation
Indices: 37060553--37060723 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
37060543 GCCCCTAAGT
* *
37060553 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37060618 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
37060646 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37060711 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37060724 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:37060720 original size:46 final size:46
Alignment explanation
Indices: 37060548--37060720 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
37060538 AACCCGCCCC
* * *
37060548 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
37060594 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
37060642 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
37060687 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37060721 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:37061175 original size:30 final size:30
Alignment explanation
Indices: 37061141--37061200 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37061131 ATTTAATACG
37061141 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
37061171 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
37061201 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:37068228 original size:93 final size:93
Alignment explanation
Indices: 37068121--37068291 Score: 324
Period size: 93 Copynumber: 1.8 Consensus size: 93
37068111 GCCCCTAAGT
*
37068121 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37068186 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
37068214 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37068279 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37068292 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:37068288 original size:46 final size:46
Alignment explanation
Indices: 37068116--37068288 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
37068106 AACCCGCCCC
* *
37068116 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
37068162 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
37068210 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
37068255 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37068289 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:37068743 original size:30 final size:30
Alignment explanation
Indices: 37068709--37068768 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37068699 ATTTAATACG
37068709 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
37068739 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
37068769 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:37069722 original size:27 final size:27
Alignment explanation
Indices: 37069684--37069842 Score: 185
Period size: 27 Copynumber: 5.9 Consensus size: 27
37069674 CCCAAATTAA
37069684 TAAAATGACTGTTTTACCCTTATGAGG
1 TAAAATGACTGTTTTACCCTTATGAGG
*
37069711 TAAAATGACTGTTTTACCCTTATGGGG
1 TAAAATGACTGTTTTACCCTTATGAGG
* * * *
37069738 TAAAATGATTATTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTACCCTTATGAGG
* *
37069765 TAAAATGACTGTTTTGCCCTTGTGAGG
1 TAAAATGACTGTTTTACCCTTATGAGG
* * * *
37069792 TAAAATTACTATTTTGCCCTT-TTATGG
1 TAAAATGACTGTTTTACCCTTATGA-GG
* *
37069819 TAAGATGACTGTTTTACCCCTATG
1 TAAAATGACTGTTTTACCCTTATG
37069843 TGATGTATGT
Statistics
Matches: 113, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.02
27 110 0.97
28 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTACCCTTATGAGG
Found at i:37070769 original size:45 final size:45
Alignment explanation
Indices: 37070705--37070794 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
37070695 CATAAAAAAA
*
37070705 CCCAAAACTCCTGAAGGAACTTGAAGGGAGATCTTTAGTCTTGAT
1 CCCAAAACTCCTGAAGGAACTTGAAGGGAGATCTTCAGTCTTGAT
37070750 CCCAAAACTCCTGAAGGAACTTGAAGGGAGATCTTCAGTCTTGAT
1 CCCAAAACTCCTGAAGGAACTTGAAGGGAGATCTTCAGTCTTGAT
37070795 GATGAATTCG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (45 bp):
CCCAAAACTCCTGAAGGAACTTGAAGGGAGATCTTCAGTCTTGAT
Found at i:37075262 original size:29 final size:29
Alignment explanation
Indices: 37075221--37075320 Score: 121
Period size: 29 Copynumber: 3.5 Consensus size: 29
37075211 AATGTGACTA
**
37075221 GGCCTAACCGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
37075250 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * *
37075279 GGCCTAATGGACCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
37075307 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
37075321 GATACAGGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
28 15 0.25
29 45 0.75
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:37077104 original size:27 final size:27
Alignment explanation
Indices: 37077074--37077217 Score: 191
Period size: 27 Copynumber: 5.3 Consensus size: 27
37077064 TACTGAAATG
* * *
37077074 CCCTCGATTTGTAAAATTACCGTTTTT
1 CCCTCGATTTATAAAATTACCATTTTA
* *
37077101 CCCTCAATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
37077128 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
37077155 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
37077182 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAAAATTACCATTTTA
37077209 CCCTCGATT
1 CCCTCGATT
37077218 GTGAAATTAC
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 102 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:37077266 original size:27 final size:27
Alignment explanation
Indices: 37077236--37077335 Score: 96
Period size: 27 Copynumber: 3.7 Consensus size: 27
37077226 ACTGAAATGC
*
37077236 CCCT-GTAGGATAGAATTACCAAAATAT
1 CCCTAGTAGG-TAAAATTACCAAAATAT
**
37077263 CCCTAGTTTGTAAAATTACCAAAATA-
1 CCCTAGTAGGTAAAATTACCAAAATAT
** *
37077289 CCTCTAGTTTGTAAAATTACCAAAATAA
1 CC-CTAGTAGGTAAAATTACCAAAATAT
**
37077317 CCCTAGTTTGTAAAATTAC
1 CCCTAGTAGGTAAAATTAC
37077336 TGAAATACCA
Statistics
Matches: 67, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
26 2 0.03
27 60 0.90
28 5 0.07
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
CCCTAGTAGGTAAAATTACCAAAATAT
Found at i:37077342 original size:81 final size:80
Alignment explanation
Indices: 37077249--37077427 Score: 234
Period size: 81 Copynumber: 2.2 Consensus size: 80
37077239 TGTAGGATAG
*
37077249 AATTACCA-AAATATCCCTAGTTTGTAAAATTACCAAAATACCTCTAGTTTGTAAAATTACCAAA
1 AATTA-CAGAAATA-CCCTAGTTTGTAAAATTACCAAAATACCTCTAATTTGTAAAATTACCAAA
* **
37077313 ATAACCCTAGTTTGTAA
64 ATAACCCTAATTTACAA
* * * * *
37077330 AATTACTGAAATACCACTGGTTTGTGAAATTACCGAAATACCTTTAATTTGTAAAATTACCAAAA
1 AATTACAGAAATACC-CTAGTTTGTAAAATTACCAAAATACCTCTAATTTGTAAAATTACCAAAA
*
37077395 TACCCCTAATTTACAA
65 TAACCCTAATTTACAA
37077411 AATTACAGAAATACCCT
1 AATTACAGAAATACCCT
37077428 TGACTTTCTA
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
80 5 0.06
81 80 0.94
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (80 bp):
AATTACAGAAATACCCTAGTTTGTAAAATTACCAAAATACCTCTAATTTGTAAAATTACCAAAAT
AACCCTAATTTACAA
Found at i:37077499 original size:27 final size:27
Alignment explanation
Indices: 37077249--37077511 Score: 201
Period size: 27 Copynumber: 9.7 Consensus size: 27
37077239 TGTAGGATAG
*
37077249 AATTACCAAAATATCCC-TAGTTTGTAA
1 AATTACCGAAATA-CCCTTAGTTTGTAA
*
37077276 AATTACCAAAATA-CCTCTAGTTTGTAA
1 AATTACCGAAATACCCT-TAGTTTGTAA
*
37077303 AATTACCAAAATAACCC-TAGTTTGTAA
1 AATTACCGAAAT-ACCCTTAGTTTGTAA
* * *
37077330 AATTACTGAAATACCAC-TGGTTTGTGA
1 AATTACCGAAATACC-CTTAGTTTGTAA
* *
37077357 AATTACCGAAATACCTTTAATTTGTAA
1 AATTACCGAAATACCCTTAGTTTGTAA
* * * **
37077384 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCGAAATACCCTTAGTTTGTAA
* * *
37077411 AATTACAGAAATACCCTTGACTTTCTAAA
1 AATTACCGAAATACCCTT-AGTTTGT-AA
** * * **
37077440 AATTATAGAAATACCATTGGTTTACAA
1 AATTACCGAAATACCCTTAGTTTGTAA
* *
37077467 AATTACTGAAATACCCTTGGTTTGTAA
1 AATTACCGAAATACCCTTAGTTTGTAA
* * *
37077494 ATTTACCAAAACACCCTT
1 AATTACCGAAATACCCTT
37077512 GTAGGATGAA
Statistics
Matches: 193, Mismatches: 35, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
25 2 0.01
26 3 0.02
27 160 0.83
28 8 0.04
29 20 0.10
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCGAAATACCCTTAGTTTGTAA
Found at i:37077573 original size:27 final size:27
Alignment explanation
Indices: 37077530--37077603 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
37077520 AAATGACTAA
*
37077530 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
37077557 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
37077584 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
37077604 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:37077607 original size:27 final size:27
Alignment explanation
Indices: 37077543--37077607 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
37077533 ACCCCTAATA
*
37077543 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
37077570 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
37077597 GGTAAAATGAC
1 GGTAAAATGAC
37077608 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:37078449 original size:25 final size:25
Alignment explanation
Indices: 37078411--37078502 Score: 139
Period size: 25 Copynumber: 3.7 Consensus size: 25
37078401 AGGAAGTGCT
* *
37078411 AAAAGGGCTATGCCTCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
37078436 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
37078461 AAAAGGGCTTTTCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
37078486 AAAAGGGCTTTGCCCCA
1 AAAAGGGCTTTGCCCCA
37078503 ATTATTAAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:37078529 original size:50 final size:51
Alignment explanation
Indices: 37078409--37078541 Score: 139
Period size: 50 Copynumber: 2.6 Consensus size: 51
37078399 GGAGGAAGTG
* * *
37078409 CTAAAAGGGCTATGCCT-CAGTTTACCGAAAAGGGCTTTGCCCCAGTTTAC
1 CTAAAAGGGCTATGCCTCCAGTTTATCAAAAAGGGCTTTGCCCCAGATTAC
* * *
37078459 CGAAAAGGGCTTTTCC-CCAGTTTATCAAAAAGGGCTTTGCCCCA-ATTA-
1 CTAAAAGGGCTATGCCTCCAGTTTATCAAAAAGGGCTTTGCCCCAGATTAC
* * *
37078507 TTAAAAGAGGCTAGGCCTCCAGTTATATGAAAAAG
1 CTAAAAG-GGCTATGCCTCCAGTT-TATCAAAAAG
37078542 TAGCTATGCT
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
48 5 0.07
49 9 0.13
50 44 0.66
51 9 0.13
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (51 bp):
CTAAAAGGGCTATGCCTCCAGTTTATCAAAAAGGGCTTTGCCCCAGATTAC
Found at i:37078712 original size:42 final size:41
Alignment explanation
Indices: 37078653--37078742 Score: 153
Period size: 42 Copynumber: 2.2 Consensus size: 41
37078643 TAGTCTCCCC
* *
37078653 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCCTGCATACATTCATTGATATTTCATGTG-TATTG
37078695 AAATGGGCCTGCATACATTCATTGATATTTCATGTGTATTG
1 AAATGGGCCTGCATACATTCATTGATATTTCATGTGTATTG
37078736 AAATGGG
1 AAATGGG
37078743 TCTATGGGCC
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 12 0.26
42 34 0.74
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (41 bp):
AAATGGGCCTGCATACATTCATTGATATTTCATGTGTATTG
Found at i:37081170 original size:6 final size:6
Alignment explanation
Indices: 37081152--37081227 Score: 75
Period size: 6 Copynumber: 12.3 Consensus size: 6
37081142 AAGAAACATT
* *
37081152 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAAA ATCAGA ATCAGA ATCAGT
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
*
37081200 ATCAGGTA A-CAGA ATCAAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATC-AGA ATCAGA AT
37081228 GTGAATGCAA
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
5 3 0.05
6 45 0.78
7 9 0.16
8 1 0.02
ACGTcount: A:0.51, C:0.16, G:0.14, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:37081640 original size:22 final size:21
Alignment explanation
Indices: 37081592--37081650 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
37081582 GTAAATACGT
37081592 TTGGCACAAAGCCATAGTCAAG
1 TTGGCAC-AAGCCATAGTCAAG
* * * *
37081614 ATGGCACGAAGCCATATTTAGG
1 TTGGCAC-AAGCCATAGTCAAG
37081636 TTGGCACAGAGCCAT
1 TTGGCACA-AGCCAT
37081651 CGATAACGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
21 1 0.03
22 29 0.97
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (21 bp):
TTGGCACAAGCCATAGTCAAG
Found at i:37081847 original size:16 final size:16
Alignment explanation
Indices: 37081826--37081856 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
37081816 ATCCTAACCC
37081826 ATGCAACATGTCATGT
1 ATGCAACATGTCATGT
37081842 ATGCAACATGTCATG
1 ATGCAACATGTCATG
37081857 CCTATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAACATGTCATGT
Found at i:37082029 original size:27 final size:27
Alignment explanation
Indices: 37081998--37082405 Score: 531
Period size: 27 Copynumber: 15.3 Consensus size: 27
37081988 GGGGTAAAAT
* * *
37081998 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
37082025 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
37082052 AGTAATTCTACCC-AC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
37082077 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
37082104 GGTAATTCTACCCTACAAGGGTATTCC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
37082131 GGTAATCCTACCCAACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
37082158 GGTAATTCTACCCTACAAGGGTATTGC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
37082185 GATAATTCTACCCTACAAGGGTATTCC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
37082212 GGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
37082239 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
37082266 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
37082292 TAGTAATTCTACCCTACAGGGGTA-TTC
1 -GGTAATTCTACCCTACAAGGGTATTTC
*
37082319 TAGTAATTCTACCCTAC-AGGGTATTTC
1 -GGTAATTCTACCCTACAAGGGTATTTC
*
37082346 AGTAATTCTACCCTACAA-GGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
**
37082372 AATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
37082399 GGTAATT
1 GGTAATT
37082406 TCACAAATCA
Statistics
Matches: 343, Mismatches: 32, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
25 21 0.06
26 51 0.15
27 271 0.79
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:37082472 original size:27 final size:26
Alignment explanation
Indices: 37082390--37082461 Score: 108
Period size: 27 Copynumber: 2.7 Consensus size: 26
37082380 TACCCTACAA
* *
37082390 GGGTATTTCGGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTT-ACAAACCAG
37082417 GGGTATTTTGGTAAATTTACAAACCAG
1 GGGTATTTTGGT-AATTTACAAACCAG
37082444 GGGTATTTTGGTAATTTA
1 GGGTATTTTGGTAATTTA
37082462 TTGATCGAGG
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
26 6 0.14
27 31 0.74
28 5 0.12
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.38
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTACAAACCAG
Found at i:37082528 original size:27 final size:27
Alignment explanation
Indices: 37082507--37082757 Score: 273
Period size: 27 Copynumber: 9.3 Consensus size: 27
37082497 AGGTATTTCA
*
37082507 GTAATTTTGTAAATCGAGGGTAAAAT-G
1 GTAATTCTGTAAATCGAGGGT-AAATCG
37082534 GTAATTCTGTAAATCGAGGGTAAAAT-G
1 GTAATTCTGTAAATCGAGGGT-AAATCG
37082561 GTAATTCTGTAAATCGAGGGTAAGA-CG
1 GTAATTCTGTAAATCGAGGGTAA-ATCG
37082588 GTAATTCTGTAAATCGAGGGTAAGA-CG
1 GTAATTCTGTAAATCGAGGGTAA-ATCG
*
37082615 GTAATTCTGTAAATCAAGGGTAAAAT-G
1 GTAATTCTGTAAATCGAGGGT-AAATCG
* *
37082642 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAATCG
* **
37082669 ATAATTCTGTAAATCGAATGTAAAAT-G
1 GTAATTCTGTAAATCGAGGGT-AAATCG
* ** *
37082696 GTAATTCTATAAATCTTGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAATCG
* *
37082723 ATAATTCTGTAAATTGAGGGTAAAAT-G
1 GTAATTCTGTAAATCGAGGGT-AAATCG
37082750 GTAATTCT
1 GTAATTCT
37082758 ATCTTACAGA
Statistics
Matches: 192, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
26 8 0.04
27 176 0.92
28 8 0.04
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAATCG
Found at i:37082572 original size:81 final size:80
Alignment explanation
Indices: 37082507--37082757 Score: 340
Period size: 81 Copynumber: 3.1 Consensus size: 80
37082497 AGGTATTTCA
* *
37082507 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTGTA
*
37082572 AATCGAGGGTAAGAC
66 AATCGAGGGTAAAAC
* * *
37082587 GGTAATTCTGTAAATCGAGGGTAAGACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTAT
1 -GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTGT
37082652 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
** * ** * *
37082668 GATAATTCTGTAAATCGAATGTAAAATGGTAATTCTATAAATCTTGGGTAAAACGATAATTCTGT
1 G-TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTGT
* *
37082733 AAATTGAGGGTAAAATG
65 AAATCGAGGGTAAAA-C
37082750 GTAATTCT
1 GTAATTCT
37082758 ATCTTACAGA
Statistics
Matches: 150, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 148 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (80 bp):
GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTGTA
AATCGAGGGTAAAAC
Found at i:37082758 original size:54 final size:54
Alignment explanation
Indices: 37082508--37082759 Score: 369
Period size: 54 Copynumber: 4.7 Consensus size: 54
37082498 GGTATTTCAG
* * * *
37082508 TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
* * * * *
37082562 TAATTCTGTAAATCGAGGGTAAGACGGTAATTCTGTAAATCGAGGGTAAGACGG
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
*
37082616 TAATTCTGTAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
** **
37082670 TAATTCTGTAAATCGAATGTAAAATGGTAATTCTATAAATCTTGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
*
37082724 TAATTCTGTAAATTGAGGGTAAAATGGTAATTCTAT
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTAT
37082760 CTTACAGAAA
Statistics
Matches: 179, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 179 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (54 bp):
TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
Found at i:37082828 original size:26 final size:27
Alignment explanation
Indices: 37082770--37082941 Score: 194
Period size: 26 Copynumber: 6.5 Consensus size: 27
37082760 CTTACAGAAA
* *
37082770 TATTTCAGTAATTTTACAAATAGAGGG
1 TATTTCAGTAATTTTACAACTCGAGGG
*
37082797 TATTTCAGTAATTTTGCAACT-GAGGG
1 TATTTCAGTAATTTTACAACTCGAGGG
* *
37082823 TATTTCGGTAATTTTACAAATCGAGGG
1 TATTTCAGTAATTTTACAACTCGAGGG
* *
37082850 TATTTCAGTAATTTTACAA-TCAACGG
1 TATTTCAGTAATTTTACAACTCGAGGG
*
37082876 TATTTCAGTAATTTATA-AAC-CGGGGG
1 TATTTCAGTAATTT-TACAACTCGAGGG
* *
37082902 TACTTT-GGTAATTTTACAACTAG-GGG
1 TA-TTTCAGTAATTTTACAACTCGAGGG
37082928 TATTTCAGTAATTT
1 TATTTCAGTAATTT
37082942 GGTAAACTAA
Statistics
Matches: 124, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
25 5 0.04
26 71 0.57
27 48 0.39
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (27 bp):
TATTTCAGTAATTTTACAACTCGAGGG
Found at i:37082836 original size:53 final size:52
Alignment explanation
Indices: 37082770--37082941 Score: 213
Period size: 53 Copynumber: 3.3 Consensus size: 52
37082760 CTTACAGAAA
* *
37082770 TATTTCAGTAATTTTACAAATAGAGGGTATTTCAGTAATTTTGCAACTGAGGG
1 TATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAACT-AGGG
* * *
37082823 TATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGG
1 TATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAA-CTAGGG
* * * *
37082876 TATTTCAGTAA-TTTATAAACCGGGGGTACTTT-GGTAATTTTACAACTAGGGG
1 TATTTCAGTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAACTA-GGG
37082928 TATTTCAGTAATTT
1 TATTTCAGTAATTT
37082942 GGTAAACTAA
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
51 2 0.02
52 39 0.38
53 61 0.59
54 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (52 bp):
TATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAACTAGGG
Found at i:37084587 original size:27 final size:27
Alignment explanation
Indices: 37084557--37084646 Score: 144
Period size: 27 Copynumber: 3.3 Consensus size: 27
37084547 TACTGAAATG
* *
37084557 CCCTCGATTTGTAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
37084584 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
37084611 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
37084638 CCCTCGATT
1 CCCTCGATT
37084647 GTGAAATTTC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:37084688 original size:26 final size:27
Alignment explanation
Indices: 37084659--37084802 Score: 130
Period size: 27 Copynumber: 5.4 Consensus size: 27
37084649 GAAATTTCTG
*
37084659 AAATACCCCT-GTAGGATAGAATTACC-
1 AAATACCCCTAGTAGG-TAAAATTACCA
**
37084685 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTAGTAGGTAAAATTACCA
**
37084712 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTAGTAGGTAAAATTACCA
* * ** * *
37084739 AAATACCACTGGTTTGTGAAATTACCG
1 AAATACCCCTAGTAGGTAAAATTACCA
* * **
37084766 AAATACCCTTAATTTGTAAAATTACCA
1 AAATACCCCTAGTAGGTAAAATTACCA
37084793 AAATACCCCT
1 AAATACCCCT
37084803 GATTTACAAA
Statistics
Matches: 102, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
26 19 0.19
27 83 0.81
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATACCCCTAGTAGGTAAAATTACCA
Found at i:37084707 original size:53 final size:54
Alignment explanation
Indices: 37084645--37084799 Score: 170
Period size: 54 Copynumber: 2.9 Consensus size: 54
37084635 TTACCCTCGA
* * * *
37084645 TTGTGAAATTTCTGAAATACCCCT-GTAGGATAGAATTACC-AAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGT
* * ** *
37084698 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
* * **
37084752 TTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACC
37084800 CCTGATTTAC
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 29 0.33
54 58 0.67
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:37084721 original size:27 final size:27
Alignment explanation
Indices: 37084678--37084827 Score: 196
Period size: 27 Copynumber: 5.6 Consensus size: 27
37084668 TGTAGGATAG
37084678 AATTACC-AAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
37084704 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
37084731 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
37084758 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
**
37084785 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
*
37084812 AATTACAAAAATACCC
1 AATTACCAAAATACCC
37084828 TTGACTTTCT
Statistics
Matches: 107, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 7 0.07
27 100 0.93
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:37084788 original size:81 final size:80
Alignment explanation
Indices: 37084678--37084826 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 80
37084668 TGTAGGATAG
* ** *
37084678 AATTACCAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAA
1 AATTACCAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTACAAAAA
37084742 TACCACTGGTTTGTGA
65 TACCACTGGTTTGTGA
*
37084758 AATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAAAAA
1 AATTACC-AAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAAAAA
37084823 TACC
65 TACC
37084827 CTTGACTTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
80 7 0.11
81 54 0.87
82 1 0.02
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.29
Consensus pattern (80 bp):
AATTACCAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAAAAAT
ACCACTGGTTTGTGA
Found at i:37084828 original size:54 final size:54
Alignment explanation
Indices: 37084678--37084909 Score: 202
Period size: 54 Copynumber: 4.3 Consensus size: 54
37084668 TGTAGGATAG
** *
37084678 AATTACC-AAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTACAAAATTACCAAAATACCCTTAGTTTGTAA
* * *** * *
37084731 AATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCTTAGTTTGTAA
* * *
37084785 AATTACCAAAATACCCCTGATTTACAAAATTACAAAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCTT-AGTTTGT-AA
* ** * ** *
37084841 AATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGT-A
1 AATTACCA-AAATACCCCTGATTTACAAAATTACCAAAATACCCTTAGTTTGTAA
* *
37084894 GATTACCAAAACACCC
1 AATTACCAAAATACCC
37084910 TTGTAGGATG
Statistics
Matches: 145, Mismatches: 28, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
53 18 0.12
54 78 0.54
55 10 0.07
56 39 0.27
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCTTAGTTTGTAA
Found at i:37084878 original size:27 final size:27
Alignment explanation
Indices: 37084839--37084890 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
37084829 TGACTTTCTA
37084839 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
37084866 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
37084891 GTAGATTACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:37085007 original size:27 final size:27
Alignment explanation
Indices: 37084943--37085007 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
37084933 ACCCCTAATA
*
37084943 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
37084970 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
37084997 GGTAAAATGAC
1 GGTAAAATGAC
37085008 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:37085905 original size:25 final size:25
Alignment explanation
Indices: 37085816--37085907 Score: 123
Period size: 25 Copynumber: 3.7 Consensus size: 25
37085806 AGGAAGTGCT
* *
37085816 AAAAGGGCTATGCC-CTAGTTTACCG
1 AAAAGGGCTTTGCCTC-AGTTTACCA
*
37085841 AAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCTCAGTTTACCA
* *
37085866 AAAAGAGCTTTGCCTCAGTTTATCA
1 AAAAGGGCTTTGCCTCAGTTTACCA
37085891 AAAAGGGCTTTGCCTCA
1 AAAAGGGCTTTGCCTCA
37085908 ATTATTAAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
25 59 0.98
26 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCTCAGTTTACCA
Found at i:37086122 original size:42 final size:42
Alignment explanation
Indices: 37086058--37086145 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
37086048 TAGTCTCCCC
* *
37086058 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATAGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
37086100 AAATAGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATAGGCTTGCATACATTCATTGATATTTCATGTGATATTG
37086142 AAAT
1 AAAT
37086146 GGGCCTATGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (42 bp):
AAATAGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:37086273 original size:29 final size:28
Alignment explanation
Indices: 37086239--37086293 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
37086229 AGACTGAATT
* *
37086239 AGGGCTTAGGCCCATACTGCTACTGTTTA
1 AGGGCTAAGGCCCAGACTG-TACTGTTTA
37086268 AGGGCTAAGGCCCAGACTGTACTGTT
1 AGGGCTAAGGCCCAGACTGTACTGTT
37086294 ATTGAACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (28 bp):
AGGGCTAAGGCCCAGACTGTACTGTTTA
Found at i:37089927 original size:14 final size:15
Alignment explanation
Indices: 37089905--37089934 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
37089895 GAATATCAAA
37089905 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
37089920 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
37089934 A
1 A
37089935 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Done.