Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 124 of 292
Found at i:37092977 original size:46 final size:46
Alignment explanation
Indices: 37092906--37093268 Score: 293
Period size: 46 Copynumber: 7.8 Consensus size: 46
37092896 TGTAACCCGC
* * *
37092906 CCATAAGTGAACACGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
* * *
37092952 CCACAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTAGCAT
* *** * ** *
37092998 ACATCTCTCGAACTAGGACTCAACTCAACGAGCTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
* *
37093045 CCATAAGTGAACTCGGA-TCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTAGCAT
* ** * * * ** *
37093090 ACATATCTCGAACTCGGACTCAACTCAATGAGTTTGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
* * * *
37093137 CCATAAGTGAGCCCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTAGCAT
* *** ** ** *
37093183 ACATCTCTCGAACTCGGACTCAACTCAACGAATTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
*
37093230 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
37093269 CCCAAATATC
Statistics
Matches: 236, Mismatches: 71, Indels: 20
0.72 0.22 0.06
Matches are distributed among these distances:
45 25 0.11
46 122 0.52
47 89 0.38
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
Found at i:37093045 original size:93 final size:93
Alignment explanation
Indices: 37092914--37093270 Score: 563
Period size: 93 Copynumber: 3.8 Consensus size: 93
37092904 GCCCATAAGT
* *** *
37092914 GAACACGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCACAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37092979 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
37093007 GAACTAGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGA-TCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
37093071 CGAGCTCGGATGCCTAGTTACATATCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * * * *
37093099 GAACTCGGACTCAACTCAATGAGTTTGGACATTCGCATCCATAAGTGAGCCCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37093164 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
**
37093192 GAACTCGGACTCAACTCAACGAATTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
37093257 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
37093271 CAAATATCCT
Statistics
Matches: 241, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
92 84 0.35
93 157 0.65
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:37101653 original size:40 final size:40
Alignment explanation
Indices: 37101571--37101802 Score: 258
Period size: 40 Copynumber: 5.8 Consensus size: 40
37101561 AACCCAAGTA
* ** *
37101571 CCTTCGGGATTTAG-CCGGATATA-GAAACTCGCA-AAAATG
1 CCTTCGGGACTTAGCCCGGATATATTCAA-TAGCACAAAA-G
*
37101610 CCTTCGGGTCTTAGCCCGGATATATTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATATTCAATAGCACAAAAG
* * * *
37101650 CCTTCGGAACTTAGCCCGGATATAGT-AACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATATTCAA-TAGCACAAAAG
* * *
37101690 CCTTCGGGACTTAGCCCAGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATATTCAATAGCACAAAAG
*
37101730 CCTTCGGGACTTAGCCCGGATATAGTT-ACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATA-TTCAATAGCACAAAAG
37101770 CCTTCGGGACTTAGCCCGGATATCATTCGAATA
1 CCTTCGGGACTTAGCCCGGATAT-ATTC-AATA
37101803 ATCATGCACA
Statistics
Matches: 166, Mismatches: 18, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
39 14 0.08
40 139 0.84
41 10 0.06
42 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATATTCAATAGCACAAAAG
Found at i:37101680 original size:80 final size:80
Alignment explanation
Indices: 37101571--37101802 Score: 333
Period size: 80 Copynumber: 2.9 Consensus size: 80
37101561 AACCCAAGTA
* * *
37101571 CCTTCGGGATTTAG-CCGGATATAGAAACTCGCAAAAATGCCTTCGGGTCTTAGCCCGGATATAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAAAAATGCCTTCGGGACTTAGCCCGGATATAT
37101635 TCAATAGCACAAAAG
66 TCAATAGCACAAAAG
* * * *
37101650 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAAAAATGCCTTCGGGACTTAGCCCGGATATAT
*
37101715 TCAATAGCACAAATG
66 TCAATAGCACAAAAG
* *
37101730 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAAA-GCCTTCGGGACTTAGCCCGGATATC
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCA-AAAATGCCTTCGGGACTTAGCCCGGATAT-
37101794 ATTCGAATA
64 ATTC-AATA
37101803 ATCATGCACA
Statistics
Matches: 135, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
79 12 0.09
80 113 0.84
81 6 0.04
82 4 0.03
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAAAAATGCCTTCGGGACTTAGCCCGGATATAT
TCAATAGCACAAAAG
Found at i:37110018 original size:40 final size:40
Alignment explanation
Indices: 37109944--37110165 Score: 333
Period size: 40 Copynumber: 5.6 Consensus size: 40
37109934 AACCCAAGTA
* *
37109944 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
37109983 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
37110023 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
37110063 CCTTCAGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
37110103 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
37110143 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
37110166 CATTCGAATA
Statistics
Matches: 167, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 15 0.09
40 146 0.87
41 6 0.04
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:37110076 original size:80 final size:80
Alignment explanation
Indices: 37109944--37110165 Score: 374
Period size: 80 Copynumber: 2.8 Consensus size: 80
37109934 AACCCAAGTA
* *
37109944 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
37110008 TCAATAGCACAAAAG
66 TCAATAGCACAAAAG
*
37110023 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
37110088 TCAATAGCACAAATG
66 TCAATAGCACAAAAG
** *
37110103 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
37110166 CATTCGAATA
Statistics
Matches: 134, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
79 13 0.10
80 121 0.90
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:37115927 original size:34 final size:34
Alignment explanation
Indices: 37115865--37115932 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
37115855 GACTATTTTT
*
37115865 TTACTGAAATGGGCTACAGCCCACACTGATACTG
1 TTACTGAAATGGGCTACAGCCCACACTGAAACTG
*
37115899 TTACTGTAATGGGCTA-ATGCCCTA-ACTGAAACTG
1 TTACTGAAATGGGCTACA-GCCC-ACACTGAAACTG
37115933 AACTGTTACT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 1 0.03
34 28 0.93
35 1 0.03
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (34 bp):
TTACTGAAATGGGCTACAGCCCACACTGAAACTG
Found at i:37134765 original size:25 final size:25
Alignment explanation
Indices: 37134737--37134789 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
37134727 GTTCTGACCC
* *
37134737 ACAGCTCATGTGAGCATACCGACTT
1 ACAGCTCATATAAGCATACCGACTT
*
37134762 ACAGCTCATATAAGCATATCGACTT
1 ACAGCTCATATAAGCATACCGACTT
37134787 ACA
1 ACA
37134790 ACTTGTGAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (25 bp):
ACAGCTCATATAAGCATACCGACTT
Found at i:37137351 original size:24 final size:24
Alignment explanation
Indices: 37137298--37137511 Score: 328
Period size: 24 Copynumber: 9.0 Consensus size: 24
37137288 GCTTTATCAT
*
37137298 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
37137322 AGTAACTGGGGCAAAAGCCCTTTTT
1 A-TAACTGGGGCATAAGCCCTTTTG
37137347 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
37137370 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
37137394 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
37137418 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
37137442 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
37137466 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
37137489 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
37137512 TCACTTCCTC
Statistics
Matches: 178, Mismatches: 7, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
23 43 0.24
24 123 0.69
25 12 0.07
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:37137400 original size:71 final size:71
Alignment explanation
Indices: 37137298--37137510 Score: 324
Period size: 71 Copynumber: 3.0 Consensus size: 71
37137288 GCTTTATCAT
* * *
37137298 ATAACTGGAGGCCT-AGCCTCTTTT-AGTAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATA
1 ATAACTGG-GGCATAAGCC-CTTTTGA-TAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
37137361 AGCCCTTTG
63 AGCCCTTTG
* *
37137370 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
37137435 CCTTTTG
66 CC-TTTG
37137442 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
37137506 CCTTT
66 CCTTT
37137511 TTCACTTCCT
Statistics
Matches: 133, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
70 3 0.02
71 71 0.53
72 59 0.44
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTG
Found at i:37137670 original size:25 final size:25
Alignment explanation
Indices: 37137623--37137671 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
37137613 TCATATATAA
* * * *
37137623 ACCTAGGGGTATAATGGTTATTTTT
1 ACCTAGGGGCAAAACGGTCATTTTT
37137648 ACCTAGGGGCAAAACGGTCATTTT
1 ACCTAGGGGCAAAACGGTCATTTT
37137672 CATATTATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (25 bp):
ACCTAGGGGCAAAACGGTCATTTTT
Found at i:37138876 original size:27 final size:27
Alignment explanation
Indices: 37138846--37138931 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 27
37138836 TACCATACAG
*
37138846 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* * * *
37138873 GGGTATTGTGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
* **
37138900 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
37138927 GGGTA
1 GGGTA
37138932 AAACAGTAAT
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.30, C:0.07, G:0.24, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:37138939 original size:27 final size:27
Alignment explanation
Indices: 37138910--37139255 Score: 478
Period size: 27 Copynumber: 12.8 Consensus size: 27
37138900 GGGTATTTTA
* *
37138910 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
37138937 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
37138964 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
37138991 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
37139018 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
37139045 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
37139072 GTAATTATGTAAATTGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
37139099 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
37139126 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
37139153 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
37139180 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
37139207 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
37139234 GTAATTATGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
37139256 CTTTGGTAAT
Statistics
Matches: 287, Mismatches: 30, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
26 1 0.00
27 285 0.99
28 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:37146708 original size:47 final size:47
Alignment explanation
Indices: 37146639--37146742 Score: 124
Period size: 47 Copynumber: 2.2 Consensus size: 47
37146629 TCCTGGATAC
* * **
37146639 GGTCTTATACTGGCTCATATCTC-AAGTTGATGCCATGTCCCAGACAT
1 GGTCTTACACTGACTCATATCTCGAAGCCGATG-CATGTCCCAGACAT
*
37146686 GGTCTTACACTGACT-ATCATCTCGTAGCCGATGCATGTCCCAGACAT
1 GGTCTTACACTGACTCAT-ATCTCGAAGCCGATGCATGTCCCAGACAT
37146733 -GTCTTACACT
1 GGTCTTACACT
37146743 AGCTCACACA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
46 12 0.24
47 32 0.64
48 6 0.12
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (47 bp):
GGTCTTACACTGACTCATATCTCGAAGCCGATGCATGTCCCAGACAT
Found at i:37148810 original size:40 final size:40
Alignment explanation
Indices: 37148736--37148889 Score: 157
Period size: 40 Copynumber: 3.9 Consensus size: 40
37148726 CCGCACCAAG
* * * * * *
37148736 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
37148776 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
** * *
37148816 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * *
37148856 GTCC-TCGGGACTTAGCCCGGATATCACAATTTGC
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTTGC
37148890 TCATGCACAC
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 91 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:37156686 original size:17 final size:18
Alignment explanation
Indices: 37156644--37156692 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
37156634 AGTTGAAAAG
37156644 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
37156663 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
37156680 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
37156693 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:37157580 original size:40 final size:40
Alignment explanation
Indices: 37157514--37157680 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
37157504 AAATTGAATG
* * *
37157514 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
37157553 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
37157593 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
37157633 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
37157673 ATATCCGG
1 ATATCCGG
37157681 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:37164986 original size:17 final size:18
Alignment explanation
Indices: 37164944--37164992 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
37164934 AGTTGAAAAG
37164944 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
37164963 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
37164980 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
37164993 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:37165884 original size:40 final size:40
Alignment explanation
Indices: 37165818--37165984 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
37165808 AAATTGAATG
* * *
37165818 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
37165857 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
37165897 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
37165937 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
37165977 ATATCCGG
1 ATATCCGG
37165985 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:37169087 original size:47 final size:49
Alignment explanation
Indices: 37169015--37169146 Score: 162
Period size: 47 Copynumber: 2.8 Consensus size: 49
37169005 GGGTAAGGTA
* *
37169015 CCGATGCCATGTCCTAGACACGGTCTTATACTGGCTCAT-AACTC-AAG
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCAACTCGAAG
* * * * * *
37169062 TCGATGCCATGTCCCACACATGGTCTTACACTGACT-ATCATCTCGTAG
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCAACTCGAAG
*
37169110 CCAATGCCATGTCCTAGACATGGTCTTACACTGGCTC
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTC
37169147 TCATAATGTG
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
46 2 0.03
47 34 0.49
48 33 0.48
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.27
Consensus pattern (49 bp):
CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCAACTCGAAG
Found at i:37169165 original size:48 final size:48
Alignment explanation
Indices: 37169016--37169186 Score: 154
Period size: 48 Copynumber: 3.6 Consensus size: 48
37169006 GGTAAGGTAC
* * **
37169016 CGATGCCATGTCCTAGACACGGTCTTATACTGG--CTCATAACTCAAGT
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAA-TGTAGT
* * * * * *
37169063 CGATGCCATGTCCCACACATGGTCTTACACTGACTATCAT-CTCGTAGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTAGT
* *
37169111 CAATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGT
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTAGT
* * *
37169159 TGATGCC-TATCCTGGACAT-GTCTTACAC
1 CGATGCCATGTCCTAGACATGGTCTTACAC
37169187 AAGCTCACAC
Statistics
Matches: 98, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
46 9 0.09
47 39 0.40
48 45 0.46
49 5 0.05
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTAGT
Found at i:37171931 original size:96 final size:96
Alignment explanation
Indices: 37171747--37171940 Score: 280
Period size: 96 Copynumber: 2.0 Consensus size: 96
37171737 TCGCTTCTTT
*
37171747 TTGCTCCTCTTAGCCCTCTTGGCTTCGACTTTACCCTTGCTCGAACCAAACTTCTTGGGCTCCTT
1 TTGCTCCTCTTAGCCCTCTTGGCTTCGACTTTACCCTTGCTCGAACCAAACTTCTTGGGCTCCGT
* * * * * *
37171812 GTCTGCTCCATTGTTTCCTTCGATGACAGAC
66 ATCTACTCCATTATTCCCATCGATAACAGAC
* * * *
37171843 TTGCTCCTCTTTGCCCTCTTGGCTTCGGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
1 TTGCTCCTCTTAGCCCTCTTGGCTTCGACTTTACCCTTGCTCGAACCAAACTTCTTGGGCTCCGT
*
37171908 ATCTACTCGATTATTCCCATCGATAACAGAC
66 ATCTACTCCATTATTCCCATCGATAACAGAC
37171939 TT
1 TT
37171941 CCTCGGACAC
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 86 1.00
ACGTcount: A:0.14, C:0.33, G:0.16, T:0.37
Consensus pattern (96 bp):
TTGCTCCTCTTAGCCCTCTTGGCTTCGACTTTACCCTTGCTCGAACCAAACTTCTTGGGCTCCGT
ATCTACTCCATTATTCCCATCGATAACAGAC
Found at i:37173256 original size:28 final size:28
Alignment explanation
Indices: 37173219--37173291 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
37173209 TCGAACCAAC
*
37173219 AGCTCAGATACCACTTGGTTCGAACCCT
1 AGCTCGGATACCACTTGGTTCGAACCCT
37173247 AGCTCGGATACCACTTGGTTCGAACCCT
1 AGCTCGGATACCACTTGGTTCGAACCCT
*
37173275 AACTCGGATACCACTTG
1 AGCTCGGATACCACTTG
37173292 TCATGGGGCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
AGCTCGGATACCACTTGGTTCGAACCCT
Found at i:37178765 original size:51 final size:51
Alignment explanation
Indices: 37178689--37178792 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
37178679 AGAATTAAAA
37178689 AGGGAAATAAGCCAAATTAGCTATCATCCTCTTCATTCAACCGTTTCTACC
1 AGGGAAATAAGCCAAATTAGCTATCATCCTCTTCATTCAACCGTTTCTACC
37178740 AGGGAAATAAGCCAAATTAGCTATCATCCTCTTCATTCAACCGTTTCTACC
1 AGGGAAATAAGCCAAATTAGCTATCATCCTCTTCATTCAACCGTTTCTACC
37178791 AG
1 AG
37178793 CAGCAGCCAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (51 bp):
AGGGAAATAAGCCAAATTAGCTATCATCCTCTTCATTCAACCGTTTCTACC
Found at i:37180446 original size:112 final size:112
Alignment explanation
Indices: 37180244--37180467 Score: 403
Period size: 112 Copynumber: 2.0 Consensus size: 112
37180234 CCGTGGACCA
* *
37180244 TTTTGGTATAATGGCTTGTATATTTTGAGTATGACATGTATAGCATTATAATCATTTTTTGTATA
1 TTTTGGTATAATGGCTTGTATATTTTGAGTATAACATGTATAGCATTATAATCATTTTGTGTATA
*
37180309 TGATCTTATGATATGGCTATTGGGTGGTAAGGAAATGTTTGGTAATG
66 TGATCTTATGATATGGCTATTGGGTGGTAAGGAAATCTTTGGTAATG
* *
37180356 TTTTTGTATAGTGGCTTGTATATTTTGAGTATAACATGTATAGCATTATAATCATTTTGTGTATA
1 TTTTGGTATAATGGCTTGTATATTTTGAGTATAACATGTATAGCATTATAATCATTTTGTGTATA
37180421 TGATCTTATGATATGGCTATTGGGTGGTAAGGAAATCTTTGGTAATG
66 TGATCTTATGATATGGCTATTGGGTGGTAAGGAAATCTTTGGTAATG
37180468 ATTAGCCATT
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
112 107 1.00
ACGTcount: A:0.27, C:0.06, G:0.23, T:0.45
Consensus pattern (112 bp):
TTTTGGTATAATGGCTTGTATATTTTGAGTATAACATGTATAGCATTATAATCATTTTGTGTATA
TGATCTTATGATATGGCTATTGGGTGGTAAGGAAATCTTTGGTAATG
Found at i:37187323 original size:28 final size:28
Alignment explanation
Indices: 37187239--37187323 Score: 84
Period size: 28 Copynumber: 3.1 Consensus size: 28
37187229 CTGTACTGAG
* **
37187239 ACCCC-AAAGGGT-AAAATGACTAAAAT
1 ACCCCTAAGGGGTAAAAATGACTATTAT
* *
37187265 ACCCCTAAGGGGTAAAAATTACTATTCT
1 ACCCCTAAGGGGTAAAAATGACTATTAT
* * *
37187293 ACCCCTAATGGGTGAAAATGACTGTTAT
1 ACCCCTAAGGGGTAAAAATGACTATTAT
37187321 ACC
1 ACC
37187324 TTAGAGGTAG
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 5 0.11
27 6 0.13
28 36 0.77
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (28 bp):
ACCCCTAAGGGGTAAAAATGACTATTAT
Found at i:37187732 original size:33 final size:34
Alignment explanation
Indices: 37187686--37187755 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 34
37187676 AGGCCCACAT
* * *
37187686 TGTTACTGCATAGGGCTTAGGCCCAGACTG-TAC
1 TGTTACTGAATAGGGCTCAGGCCCAGACCGTTAC
*
37187719 TGTTATTGAATAGGGCTCAGGCCCAGACCGTTAC
1 TGTTACTGAATAGGGCTCAGGCCCAGACCGTTAC
37187753 TGT
1 TGT
37187756 ATGCACTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 26 0.81
34 6 0.19
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (34 bp):
TGTTACTGAATAGGGCTCAGGCCCAGACCGTTAC
Found at i:37190912 original size:48 final size:49
Alignment explanation
Indices: 37190829--37190964 Score: 134
Period size: 48 Copynumber: 2.8 Consensus size: 49
37190819 AGGAAATATA
* * *
37190829 TTGATTTGGGTTTGGGCCATGAAATCGGCACTTTGGGTGCGAG-TT-AC
1 TTGATTTGGCTTCGGGCCATGATATCGGCACTTTGGGTGCGAGCTTCAC
* * * *
37190876 TTTGATTTGGCTTCGAGCCATGATATGGGCATTTTGGGTGTGAGCTTCAC
1 -TTGATTTGGCTTCGGGCCATGATATCGGCACTTTGGGTGCGAGCTTCAC
* * ** *
37190926 -TAATTTGGCTACGGGCCATGATATTAGCACTTCGGGTGC
1 TTGATTTGGCTTCGGGCCATGATATCGGCACTTTGGGTGC
37190965 AAAATATATT
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
48 67 0.94
49 2 0.03
50 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.31, T:0.35
Consensus pattern (49 bp):
TTGATTTGGCTTCGGGCCATGATATCGGCACTTTGGGTGCGAGCTTCAC
Found at i:37192254 original size:31 final size:31
Alignment explanation
Indices: 37192211--37192274 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
37192201 CCTTTTCATA
37192211 TTTCATATTTCATAACACT-GAGCCGAAGCCT
1 TTTCATATTTCATAACACTAG-GCCGAAGCCT
* **
37192242 TTTCGTATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
37192273 TT
1 TT
37192275 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 28 0.97
32 1 0.03
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:37192521 original size:24 final size:24
Alignment explanation
Indices: 37192467--37192637 Score: 188
Period size: 25 Copynumber: 7.0 Consensus size: 24
37192457 TGCTTTATCA
*
37192467 TATAACTGGAGGCCT-AG-CCTATTT
1 TATAACTGG-GGCATAAGCCCT-TTT
*
37192491 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCCTTTT
37192516 TATAACTGGGGCATAAG-CCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
*
37192539 ATCATAACTGGGGCATAAGCCCTTCAT
1 -T-ATAACTGGGGCATAAGCCCTT-TT
* *
37192566 CATAACTGGGGCATAAGCCCTTCAT
1 TATAACTGGGGCATAAGCCCTT-TT
*
37192591 CATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTT
*
37192614 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
37192638 GCACTTCCTC
Statistics
Matches: 132, Mismatches: 7, Indels: 16
0.85 0.05 0.10
Matches are distributed among these distances:
23 26 0.20
24 24 0.18
25 74 0.56
26 7 0.05
27 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
TATAACTGGGGCATAAGCCCTTTT
Found at i:37192593 original size:50 final size:48
Alignment explanation
Indices: 37192494--37192635 Score: 212
Period size: 50 Copynumber: 2.9 Consensus size: 48
37192484 CCTATTTTAG
* * * *
37192494 TAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCTTTTATCA
1 TAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTCATCA
*
37192543 TAACTGGGGCATAAGCCCTTCATCATAACTGGGGCATAAGCCCTTCATCA
1 TAACTGGGGCATAAGCCCTT--TAATAACTGGGGCATAAGCCCTTCATCA
37192593 TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTT
1 TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTT
37192636 TTGCACTTCC
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
48 24 0.28
49 17 0.20
50 45 0.52
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (48 bp):
TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTCATCA
Found at i:37192709 original size:9 final size:9
Alignment explanation
Indices: 37192695--37192751 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
37192685 ATCTCATGTG
37192695 CATATCATA
1 CATATCATA
*
37192704 CATATCATGTG
1 CATATCA--TA
37192715 CATATCATA
1 CATATCATA
* *
37192724 CATGTCATGTG
1 CATATCA--TA
37192735 CATATCATA
1 CATATCATA
37192744 CATATCAT
1 CATATCAT
37192752 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:37192711 original size:20 final size:20
Alignment explanation
Indices: 37192683--37192753 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
37192673 GCATTTATGA
*
37192683 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
37192703 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
37192723 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
37192743 ACATATCATGT
1 ACATATCATGT
37192754 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:37192718 original size:11 final size:11
Alignment explanation
Indices: 37192688--37192742 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
37192678 TATGAACATC
37192688 TCATGTGCATA
1 TCATGTGCATA
*
37192699 TCA--TACATA
1 TCATGTGCATA
37192708 TCATGTGCATA
1 TCATGTGCATA
* *
37192719 TCA--TACATG
1 TCATGTGCATA
37192728 TCATGTGCATA
1 TCATGTGCATA
37192739 TCAT
1 TCAT
37192743 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:37192818 original size:25 final size:25
Alignment explanation
Indices: 37192790--37192837 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37192780 ATATATAAAC
* * *
37192790 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
37192815 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
37192838 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:37194205 original size:56 final size:54
Alignment explanation
Indices: 37194118--37194241 Score: 140
Period size: 56 Copynumber: 2.3 Consensus size: 54
37194108 ACAAACCAAG
* *
37194118 GGTATTTCAGTAATGTTGTAAACCAATGGTATTTTTATAATTTTTAGAAAGTTAAA
1 GGTATTTCAGTAATGTTGTAAACCAAGGGTATTTTGATAA-TTTTAGAAA-TTAAA
* * * * * * * *
37194174 GGTATTTCTGTATTTTTGTAAATCAGGGGTATTTTGGTAATTTTATAAATTGAA
1 GGTATTTCAGTAATGTTGTAAACCAAGGGTATTTTGATAATTTTAGAAATTAAA
37194228 GGTATTTCAGTAAT
1 GGTATTTCAGTAAT
37194242 TTCACAAACT
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
54 16 0.29
55 8 0.14
56 32 0.57
ACGTcount: A:0.31, C:0.05, G:0.19, T:0.45
Consensus pattern (54 bp):
GGTATTTCAGTAATGTTGTAAACCAAGGGTATTTTGATAATTTTAGAAATTAAA
Found at i:37194217 original size:27 final size:27
Alignment explanation
Indices: 37194197--37194377 Score: 181
Period size: 27 Copynumber: 6.8 Consensus size: 27
37194187 TTTTGTAAAT
*
37194197 CAGGGGTATTTTGGTAATTTTATAAA-
1 CAGGGGTATTTTGGTAATTTTACAAAC
** * ** *
37194223 TTGAAGGTATTTCAGTAATTTCACAAAC
1 CAG-GGGTATTTTGGTAATTTTACAAAC
* *
37194251 TAGTGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
37194278 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
37194305 CAGGGGTATTTTAGCAATTTTACAGAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
37194332 CA-GGGTATTTTGGTAATTTGT--AAAC
1 CAGGGGTATTTTGGTAATTT-TACAAAC
* *
37194357 CAAGGGTATTTTAGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
37194378 GTAAATCGAG
Statistics
Matches: 130, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
25 6 0.05
26 32 0.25
27 90 0.69
28 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:37194290 original size:81 final size:80
Alignment explanation
Indices: 37194188--37194384 Score: 220
Period size: 81 Copynumber: 2.5 Consensus size: 80
37194178 TTTCTGTATT
* ** * *
37194188 TTTGTAAATCAGGGGTATTTTGGTAATTTTATAAATTGA-AGGTATTTCAGTAATTTCACAAACT
1 TTTGTAAACCAGGGGTATTTTGGTAATTTTATAAATCCAGAGGTATTTCAGCAATTTCACAAACC
37194252 AGTGGTATTTTGGTAA
66 AG-GGTATTTTGGTAA
* * * * * *
37194268 TTT-TACAAACTAGGGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTTAGCAATTTTACAGA
1 TTTGT--AAACCAGGGGTATTTTGGTAATTTTATAAATCCAGAGGTATTTCAGCAATTTCACAAA
37194331 CCAGGGTATTTTGGTAA
64 CCAGGGTATTTTGGTAA
* * *
37194348 TTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATC
1 TTTGTAAACCAGGGGTATTTTGGTAATTTTATAAATC
37194385 GAGGGTAAAA
Statistics
Matches: 96, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
79 26 0.27
80 21 0.22
81 49 0.51
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
TTTGTAAACCAGGGGTATTTTGGTAATTTTATAAATCCAGAGGTATTTCAGCAATTTCACAAACC
AGGGTATTTTGGTAA
Found at i:37194389 original size:27 final size:27
Alignment explanation
Indices: 37194174--37194445 Score: 126
Period size: 27 Copynumber: 10.1 Consensus size: 27
37194164 GAAAGTTAAA
* *
37194174 GGTATTTCT-GTATTTTTGTAAATC-AGG
1 GGTATTT-TAGTAATTTTATAAATCGA-G
* * *
37194201 GGTATTTTGGTAATTTTATAAATTGAA
1 GGTATTTTAGTAATTTTATAAATCGAG
* * * *
37194228 GGTATTTCAGTAATTTCACAAA-CTAG
1 GGTATTTTAGTAATTTTATAAATCGAG
* * *
37194254 TGGTATTTTGGTAATTTTACAAA-CTAGG
1 -GGTATTTTAGTAATTTTATAAATCGA-G
* * *
37194282 GGTATTTTGGTAATTTTACAAA-CCAGG
1 GGTATTTTAGTAATTTTATAAATCGA-G
* * * *
37194309 GGTATTTTAGCAATTTTACAGA-CCAG
1 GGTATTTTAGTAATTTTATAAATCGAG
* * * *
37194335 GGTATTTTGGTAA-TTTGTAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCGAG
*
37194361 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCGAG
**** * * **
37194388 GGTAAAACAGTAATTCTGTAAATTAAG
1 GGTATTTTAGTAATTTTATAAATCGAG
*** *
37194415 GGTAAAATAGTAATTCTATAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCGAG
37194442 GGTA
1 GGTA
37194446 AAACGGTAAT
Statistics
Matches: 201, Mismatches: 38, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
25 5 0.02
26 29 0.14
27 165 0.82
28 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCGAG
Found at i:37194446 original size:27 final size:27
Alignment explanation
Indices: 37194369--37194472 Score: 136
Period size: 27 Copynumber: 3.9 Consensus size: 27
37194359 AGGGTATTTT
*
37194369 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
** *
37194396 AGTAATTCTGTAAATTAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
37194423 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
37194450 GGTAATTATGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
37194473 CTTTGGTAAT
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:37194495 original size:54 final size:53
Alignment explanation
Indices: 37194343--37194496 Score: 164
Period size: 54 Copynumber: 2.9 Consensus size: 53
37194333 AGGGTATTTT
* * *
37194343 GGTAATTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGGGTAAAAC
* * ** *
37194396 AGTAATTCTGTAAATTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATT-TGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGGGTAAAAC
** * * * *
37194450 GGTAATTATGTAAATCGGGGGTACTTTGGTAATTTTACAAGTCGAGG
1 GGTAATT-TGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGG
37194497 CTATTTCAAT
Statistics
Matches: 80, Mismatches: 20, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
53 6 0.08
54 74 0.93
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.32
Consensus pattern (53 bp):
GGTAATTTGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGGGTAAAAC
Found at i:37196025 original size:31 final size:31
Alignment explanation
Indices: 37195987--37196050 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
37195977 CCTTTTCATA
37195987 TTTCATATTTCATAACACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
37196018 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
37196049 TT
1 TT
37196051 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:37196286 original size:25 final size:23
Alignment explanation
Indices: 37196243--37196436 Score: 237
Period size: 25 Copynumber: 8.0 Consensus size: 23
37196233 TGCTTTATCA
*
37196243 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
37196267 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCC-TTT
*
37196292 TATAACTAGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
37196315 ATCATAACTGGGGCATAAGCCCTTCAT
1 -T-ATAACTGGGGCATAAGCCCTT--T
*
37196342 CATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
37196365 ATCATAACTGGGGCATAAGCCCTTT
1 -T-ATAACTGGGGCATAAGCCCTTT
*
37196390 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
37196413 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
37196436 T
1 T
37196437 GCACTTCCTC
Statistics
Matches: 152, Mismatches: 9, Indels: 19
0.84 0.05 0.11
Matches are distributed among these distances:
23 49 0.32
24 23 0.15
25 79 0.52
27 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:37196512 original size:20 final size:20
Alignment explanation
Indices: 37196487--37196592 Score: 194
Period size: 20 Copynumber: 5.3 Consensus size: 20
37196477 AATGAATATT
37196487 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
37196507 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
37196527 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
37196547 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
37196567 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
37196587 TCATGT
1 TCATGT
37196593 TTATCAAAAT
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 82 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:37196657 original size:25 final size:25
Alignment explanation
Indices: 37196629--37196676 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
37196619 ATATATAAAC
* *
37196629 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAACGGTCATTTTTA
37196654 CCTAGGGGTAAAACGGTCATTTT
1 CCTAGGGGTAAAACGGTCATTTT
37196677 CATGTTATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGTAAAACGGTCATTTTTA
Found at i:37198045 original size:55 final size:54
Alignment explanation
Indices: 37197959--37198217 Score: 161
Period size: 53 Copynumber: 4.8 Consensus size: 54
37197949 ACAAACCAAG
* *
37197959 GGTATTTCAGTAATGTTGTAAACCAATGGTATTTT-ATAATTTTTAGAAAGTTAAA
1 GGTATTTCAGTAATTTTGTAAACCAAGGGTATTTTGATAA-TTTTAGAAA-TTAAA
* * * * * *
37198014 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTATAAATTGAA
1 GGTATTTCAGTAATTTTGTAAACCAAGGGTATTTTGATAATTTTAGAAATTAAA
*** * * * * *
37198068 GGTATTTCAGTAATTTCACAAA-CTAGTGGTATTTTGGTAATTTTACAAACT-AG
1 GGTATTTCAGTAATTTTGTAAACCAAG-GGTATTTTGATAATTTTAGAAATTAAA
** ** * * * * ** *
37198121 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTT-AGCAATTTTACAGA-CCAG
1 GGTATTTCAGTAATTTTGTAAACCAAGGGTATTTTGA-TAATTTTAGAAATTAAA
* **
37198174 GGTGTTTTGGTAATTTTGTAAACCAAGGGTATTTT-AGTAATTTT
1 GGTATTTCAGTAATTTTGTAAACCAAGGGTATTTTGA-TAATTTT
37198218 GTAAATCGAG
Statistics
Matches: 168, Mismatches: 31, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
53 81 0.48
54 46 0.27
55 38 0.23
56 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (54 bp):
GGTATTTCAGTAATTTTGTAAACCAAGGGTATTTTGATAATTTTAGAAATTAAA
Found at i:37198142 original size:53 final size:52
Alignment explanation
Indices: 37198014--37198217 Score: 176
Period size: 53 Copynumber: 3.8 Consensus size: 52
37198004 GAAAGTTAAA
** * * * * *
37198014 GGTATTTCT-GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTATAAATTGAA
1 GGTATTT-TGGTAATTTTACAAA-CAAGGGTATTTTAGTAATTTTACAAACT-AG
** * * *
37198068 GGTATTTCAGTAATTTCACAAACTAGTGGTATTTTGGTAATTTTACAAACTAG
1 GGTATTTTGGTAATTTTACAAACAAG-GGTATTTTAGTAATTTTACAAACTAG
* * * *
37198121 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTACAGACCAG
1 GGTATTTTGGTAATTTTACAAA-CAAGGGTATTTTAGTAATTTTACAAACTAG
* **
37198174 GGTGTTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 GGTATTTTGGTAATTTTACAAA-CAAGGGTATTTTAGTAATTTT
37198218 GTAAATCGAG
Statistics
Matches: 124, Mismatches: 23, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
53 83 0.67
54 41 0.33
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.42
Consensus pattern (52 bp):
GGTATTTTGGTAATTTTACAAACAAGGGTATTTTAGTAATTTTACAAACTAG
Found at i:37198218 original size:27 final size:27
Alignment explanation
Indices: 37197928--37198231 Score: 179
Period size: 27 Copynumber: 11.3 Consensus size: 27
37197918 TTTCACCCTA
* * * * *
37197928 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
37197955 CAAGGGTATTTCAGTAATGTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
37197982 CAATGGTATTTTA-TAATTTTTAGAAAGT
1 CAAGGGTATTTTAGTAA-TTTTATAAA-C
* * * *
37198010 TAAAGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAC
* * *
37198037 CAGGGGTATTTTGGTAATTTTATAAATT
1 CAAGGGTATTTTAGTAATTTTATAAA-C
* * * *
37198065 GAA-GGTATTTCAGTAATTTCACAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
37198090 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTAGTAATTTTATAAAC
* * *
37198117 CTAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
37198144 CAGGGGTATTTTAGCAATTTTACAGAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
37198171 C-AGGGTGTTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
37198197 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
*
37198224 CGAGGGTA
1 CAAGGGTA
37198232 AAACTGTAAT
Statistics
Matches: 218, Mismatches: 49, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.00
26 45 0.21
27 150 0.69
28 18 0.08
29 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAC
Found at i:37198231 original size:80 final size:80
Alignment explanation
Indices: 37198014--37198231 Score: 235
Period size: 80 Copynumber: 2.7 Consensus size: 80
37198004 GAAAGTTAAA
* * *
37198014 GGTATTTCT-GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTATAAATTGAAGGTATTTCAG
1 GGTATTT-TGGTAATTTTGTAAA-CAAGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTCAG
* *
37198078 TAATTTCACAAACTAGT
64 CAATTTCACAAACCAGT
** * * * *
37198095 GGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTTAGC
1 GGTATTTTGGTAATTTTGTAAACAAGGGTATTTTGGTAATTTTATAAATCGA-GGGTATTTCAGC
* *
37198159 AATTTTACAGACCAG-
65 AATTTCACAAACCAGT
* * *
37198174 GGTGTTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGTATTTTGGTAATTTTGTAAA-CAAGGGTATTTTGGTAATTTTATAAATCGAGGGTA
37198232 AAACTGTAAT
Statistics
Matches: 112, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 20 0.18
80 72 0.64
81 20 0.18
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (80 bp):
GGTATTTTGGTAATTTTGTAAACAAGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTCAGCA
ATTTCACAAACCAGT
Found at i:37198240 original size:27 final size:27
Alignment explanation
Indices: 37198210--37198339 Score: 170
Period size: 27 Copynumber: 4.8 Consensus size: 27
37198200 GGGTATTTTA
* *
37198210 GTAATTTTGTAAATCGAGGGTAAAACT
1 GTAATTCTGTAAATCGAGGGTAAAACG
** **
37198237 GTAATTCTGTAAATTAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
37198264 GTAATTCTATAAATCGAGGGTATAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
37198291 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
37198318 GTAATTATGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
37198340 CTTTGGTAAT
Statistics
Matches: 88, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:37198256 original size:54 final size:54
Alignment explanation
Indices: 37198182--37198339 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 54
37198172 AGGGTGTTTT
* * *** * *
37198182 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
* * *
37198236 TGTAATTCTGTAAATTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTATAAC
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
* ** * * *
37198290 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTA
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
37198340 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 86 1.00
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (54 bp):
GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
Found at i:37198377 original size:81 final size:81
Alignment explanation
Indices: 37198201--37198377 Score: 183
Period size: 81 Copynumber: 2.2 Consensus size: 81
37198191 GTAAACCAAG
* * * * *
37198201 GGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACTGTAATTCTGTAAATTAAGGGTAAAATAGT
1 GGTATTTCAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAATAGT
* *
37198266 AATTCTATAAATCGAG
66 AATTCTACAAATCGAA
** * ** *** *
37198282 GGTATAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTACTTTGGT
1 GGTATTTCAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAATAGT
* *
37198347 AATTTTACAAGTCGAA
66 AATTCTACAAATCGAA
*
37198363 GGTATTTCAATAATT
1 GGTATTTCAGTAATT
37198378 GGTAAACTAA
Statistics
Matches: 74, Mismatches: 22, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (81 bp):
GGTATTTCAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAATAGT
AATTCTACAAATCGAA
Found at i:37199350 original size:550 final size:550
Alignment explanation
Indices: 37198293--37199397 Score: 2066
Period size: 550 Copynumber: 2.0 Consensus size: 550
37198283 GTATAACGGT
* * * *
37198293 AATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTACTTTGGTAATTTTACAAG
1 AATTCTATAAATCGAGCGTAAAACAGTAATTATGTAAATCGGGAGTACTTTGGTAATTTTACAAG
37198358 TCGAAGGTATTTCAATAATTGGTAAACTAAAGTATTCTAAACATGGATAACAATACTAATGGCTC
66 TCGAAGGTATTTCAATAATTGGTAAACTAAAGTATTCTAAACATGGATAACAATACTAATGGCTC
37198423 TAAAGCCCATTCTCGGCCCAAATGGGCCCACACGCTCGTGTGGCCCTTTTAGCCCAAATCTAGCC
131 TAAAGCCCATTCTCGGCCCAAATGGGCCCACACGCTCGTGTGGCCCTTTTAGCCCAAATCTAGCC
37198488 ACAAATATTAGACTCACCTAGCCTAACCCAATATTTACTACACAATCAAACAACTTATCCAATTG
196 ACAAATATTAGACTCACCTAGCCTAACCCAATATTTACTACACAATCAAACAACTTATCCAATTG
*
37198553 GGCCTGTAGGCCCATTAGGTCCACATGACCCCTTTCGACCCATCGCAGCCCGAAGTAGCCATCGT
261 GGCCTGTAGGCCCATTAGGCCCACATGACCCCTTTCGACCCATCGCAGCCCGAAGTAGCCATCGT
*
37198618 ACAGCAAGAGTAGTATGAAATACACACCTGATAGGAGACTGGAGTTAATCCACACTCCGAGCACT
326 ACAGCAAGAGTAGTAAGAAATACACACCTGATAGGAGACTGGAGTTAATCCACACTCCGAGCACT
* *
37198683 CTTAGCCGACGTCTAACCCAAACGAGCACGCCATACAGCGAAAGAGATCAGCCAAGAAAGGTACA
391 CTTAGCCGACGCCCAACCCAAACGAGCACGCCATACAGCGAAAGAGATCAGCCAAGAAAGGTACA
37198748 TTTACTCTCCTCATGATTCCCTCTATTTAAAGCCAATTTCACAACCACTCTTATATTAGCTTCCT
456 TTTACTCTCCTCATGATTCCCTCTATTTAAAGCCAATTTCACAACCACTCTTATATTAGCTTCCT
37198813 GATGTGGGATCCCTCCAACATTAGAGTTTA
521 GATGTGGGATCCCTCCAACATTAGAGTTTA
* *
37198843 AATTCTATAAATCTAGCGTAAAACAGTAATTCTGTAAATCGGGAGTACTTTGGTAATTTTACAAG
1 AATTCTATAAATCGAGCGTAAAACAGTAATTATGTAAATCGGGAGTACTTTGGTAATTTTACAAG
*
37198908 TCGAGGGTATTTCAATAATTGGTAAACTAAAGTATTCTAAACATGGATAACAATACTAATGGCTC
66 TCGAAGGTATTTCAATAATTGGTAAACTAAAGTATTCTAAACATGGATAACAATACTAATGGCTC
*
37198973 TAAAGCCCATTCTCGGCCCAAATGGGCCCACACGCTCGTGTGGCCCTTTTTGCCCAAATCTAGCC
131 TAAAGCCCATTCTCGGCCCAAATGGGCCCACACGCTCGTGTGGCCCTTTTAGCCCAAATCTAGCC
* *
37199038 ACAAATATTAGATTCACCTAGCCTAGCCCAATATTTACTACACAATCAAACAACTTATCCAATTG
196 ACAAATATTAGACTCACCTAGCCTAACCCAATATTTACTACACAATCAAACAACTTATCCAATTG
*
37199103 GGCCTGTAGGCCCATTAGGCCCACATGACCCCTTTCGACCCATCGCGGCCCGAAGTAGCCATCGT
261 GGCCTGTAGGCCCATTAGGCCCACATGACCCCTTTCGACCCATCGCAGCCCGAAGTAGCCATCGT
37199168 ACAGCAAGAGTAGTAAGAAATACACACCTGATAGGAGACTGGAGTTAATCCACACTCCGAGCACT
326 ACAGCAAGAGTAGTAAGAAATACACACCTGATAGGAGACTGGAGTTAATCCACACTCCGAGCACT
37199233 CTTAGCCGACGCCCAACCCAAACGAGCACGCCATACAGCGAAAGAGATCAGCCAAGAAAGGTACA
391 CTTAGCCGACGCCCAACCCAAACGAGCACGCCATACAGCGAAAGAGATCAGCCAAGAAAGGTACA
*
37199298 TTTACTCTCCTCATGATTCCCTCTATTTAAAGCCAATTTCACAACCACTCTTATATTTGCTTCCT
456 TTTACTCTCCTCATGATTCCCTCTATTTAAAGCCAATTTCACAACCACTCTTATATTAGCTTCCT
37199363 GATGTGGGATCCCTCCAACATTAGAGTTTA
521 GATGTGGGATCCCTCCAACATTAGAGTTTA
37199393 AATTC
1 AATTC
37199398 AACACTAACT
Statistics
Matches: 539, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
550 539 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (550 bp):
AATTCTATAAATCGAGCGTAAAACAGTAATTATGTAAATCGGGAGTACTTTGGTAATTTTACAAG
TCGAAGGTATTTCAATAATTGGTAAACTAAAGTATTCTAAACATGGATAACAATACTAATGGCTC
TAAAGCCCATTCTCGGCCCAAATGGGCCCACACGCTCGTGTGGCCCTTTTAGCCCAAATCTAGCC
ACAAATATTAGACTCACCTAGCCTAACCCAATATTTACTACACAATCAAACAACTTATCCAATTG
GGCCTGTAGGCCCATTAGGCCCACATGACCCCTTTCGACCCATCGCAGCCCGAAGTAGCCATCGT
ACAGCAAGAGTAGTAAGAAATACACACCTGATAGGAGACTGGAGTTAATCCACACTCCGAGCACT
CTTAGCCGACGCCCAACCCAAACGAGCACGCCATACAGCGAAAGAGATCAGCCAAGAAAGGTACA
TTTACTCTCCTCATGATTCCCTCTATTTAAAGCCAATTTCACAACCACTCTTATATTAGCTTCCT
GATGTGGGATCCCTCCAACATTAGAGTTTA
Found at i:37201677 original size:30 final size:31
Alignment explanation
Indices: 37201636--37201698 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
37201626 CCTTTTCATA
37201636 TTTCATATTTCATAACACT-GGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
* **
37201666 TTTCGTATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
37201697 TT
1 TT
37201699 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 16 0.55
31 13 0.45
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:37201934 original size:25 final size:23
Alignment explanation
Indices: 37201891--37202109 Score: 235
Period size: 25 Copynumber: 9.0 Consensus size: 23
37201881 TGCTTTATCA
*
37201891 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
37201915 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCC-TTT
37201940 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
37201963 ATCATAACTGGGGCATAAGCCCTTCAT
1 -T-ATAACTGGGGCATAAGCCCTT--T
37201990 TATAACTGGGGCATAAGCCCTTCAT
1 TATAACTGGGGCATAAGCCCTT--T
*
37202015 CATAACTGGGGCATAAGCCCTTTAT
1 TATAACTGGGGCATAAGCCC-TT-T
* *
37202040 TATAATTGGGGTATAAGCCC-TT
1 TATAACTGGGGCATAAGCCCTTT
*
37202062 TAGTAACTGAGGCATAAGCCCTTT
1 TA-TAACTGGGGCATAAGCCCTTT
* *
37202086 AATAACTGGGGCATAAGCCTTTT
1 TATAACTGGGGCATAAGCCCTTT
37202109 T
1 T
37202110 GCACTTCCTC
Statistics
Matches: 171, Mismatches: 14, Indels: 21
0.83 0.07 0.10
Matches are distributed among these distances:
22 3 0.02
23 38 0.22
24 27 0.16
25 99 0.58
26 3 0.02
27 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:37202007 original size:50 final size:49
Alignment explanation
Indices: 37201918--37202104 Score: 263
Period size: 50 Copynumber: 3.8 Consensus size: 49
37201908 CCTCTTTTAG
* *
37201918 TAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTATCA
1 TAACTGGGGCATAAGCCCTTATTATAACTGGGGCATAAGCCCTTTATCA
*
37201967 TAACTGGGGCATAAGCCCTTCATTATAACTGGGGCATAAGCCCTTCATCA
1 TAACTGGGGCATAAGCCCTT-ATTATAACTGGGGCATAAGCCCTTTATCA
* * *
37202017 TAACTGGGGCATAAGCCCTTTATTATAATTGGGGTATAAGCCCTTTA--G
1 TAACTGGGGCATAAGCCC-TTATTATAACTGGGGCATAAGCCCTTTATCA
* *
37202065 TAACTGAGGCATAAGCCCTT-TAATAACTGGGGCATAAGCC
1 TAACTGGGGCATAAGCCCTTATTATAACTGGGGCATAAGCC
37202105 TTTTTGCACT
Statistics
Matches: 125, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
46 17 0.14
47 2 0.02
48 17 0.14
49 19 0.15
50 68 0.54
51 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (49 bp):
TAACTGGGGCATAAGCCCTTATTATAACTGGGGCATAAGCCCTTTATCA
Found at i:37202050 original size:75 final size:71
Alignment explanation
Indices: 37201913--37202104 Score: 260
Period size: 75 Copynumber: 2.6 Consensus size: 71
37201903 CCTAGCCTCT
* *
37201913 TTTAGTAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCA
1 TTTAGTAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCA
37201978 TAAGCCC
65 TAAGCCC
* * *
37201985 TTCATTA-TAACTGGGGCATAAGCCCTTCATCATAACTGGGGCATAAGCCCTTTATTATAATTGG
1 -T--TTAGTAACTGGGGCATAAGCCCTT--TAATAACTGGGGCATAAGCCCTTTATCATAACTGG
*
37202049 GGTATAAGCCC
61 GGCATAAGCCC
*
37202060 TTTAGTAACTGAGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 TTTAGTAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
37202105 TTTTTGCACT
Statistics
Matches: 107, Mismatches: 7, Indels: 12
0.85 0.06 0.10
Matches are distributed among these distances:
71 19 0.18
72 3 0.03
73 22 0.21
74 18 0.17
75 45 0.42
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (71 bp):
TTTAGTAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCAT
AAGCCC
Found at i:37202183 original size:20 final size:20
Alignment explanation
Indices: 37202155--37202225 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
37202145 GCATTTATGA
*
37202155 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
37202175 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
37202195 ACATGTCATGTGCATGTCAT
1 ACATATCATGTGCATATCAT
37202215 ACATATCATGT
1 ACATATCATGT
37202226 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:37202290 original size:25 final size:25
Alignment explanation
Indices: 37202262--37202309 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
37202252 ATATATAAAC
* *
37202262 CCTAGGGGTATAACGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
37202287 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
37202310 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:37203495 original size:27 final size:27
Alignment explanation
Indices: 37203465--37203529 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
37203455 GGGCATATTC
*
37203465 GTCATTTTACTATACAGGGG-TATTACA
1 GTCATTTTACCATACAGGGGCT-TTACA
* *
37203492 GTCACTTTACCCTACAGGGGCTTTACA
1 GTCATTTTACCATACAGGGGCTTTACA
*
37203519 GTCTTTTTACC
1 GTCATTTTACC
37203530 TAAAAGGGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGCTTTACA
Found at i:37203853 original size:27 final size:27
Alignment explanation
Indices: 37203559--37203848 Score: 221
Period size: 27 Copynumber: 10.8 Consensus size: 27
37203549 TTTCACCCTA
* * *
37203559 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * **
37203586 CAAGGGTATTTCAGTAATGTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** * *
37203613 CAATGGTATTTTTATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-C
** *
37203642 CAAGGGTATTTCT-GT-ATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAC
* *
37203668 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * * *
37203695 TGAGGGTATTTCGGTACTTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
37203721 CTAGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
* *
37203749 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
37203776 C-AGGGTATTTTAGCAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
37203802 CGA-GGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
37203828 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
37203849 GTAAATCGAG
Statistics
Matches: 207, Mismatches: 47, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.00
26 59 0.29
27 127 0.61
28 8 0.04
29 11 0.05
30 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:37203860 original size:27 final size:27
Alignment explanation
Indices: 37203559--37203917 Score: 156
Period size: 27 Copynumber: 13.3 Consensus size: 27
37203549 TTTCACCCTA
* * * * * *
37203559 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * * *
37203586 CAAGGGTATTTCAGTAATGTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
37203613 CAATGGTATTTTTA-TAATTTTTAGAAAGT
1 CAAGGGTA-TTTTAGTAA-TTTTATAAA-T
*
37203642 CAAGGGTATTTCT-GT-ATTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * *
37203668 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** ** * * *
37203695 TGAGGGTATTTCGGTACTTTCACAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
37203721 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTAGTAATTTTATAAAT
* * *
37203748 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTAGTAATTTTATAAAT
* * * *
37203775 CCAGGGTATTTTAGCAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * * *
37203802 CGA-GGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
37203828 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* **** * *
37203855 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *** *
37203882 TAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
37203909 CGAGGGTAT
1 CAAGGGTAT
37203918 AACGGTAATT
Statistics
Matches: 263, Mismatches: 58, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
25 1 0.00
26 57 0.22
27 181 0.69
28 15 0.06
29 9 0.03
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:37203925 original size:27 final size:27
Alignment explanation
Indices: 37203840--37203969 Score: 163
Period size: 27 Copynumber: 4.9 Consensus size: 27
37203830 AGGGTATTTT
*
37203840 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
** *
37203867 AGTAATTCTGTAAATTAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
37203894 AGTAATTCTATAAATCGAGGGTATAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
37203921 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
37203948 GGTAATTATGTAAATCG-GGGTA
1 AGTAATTCTGTAAATCGAGGGTA
37203970 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 5 0.06
27 85 0.94
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:37206881 original size:53 final size:55
Alignment explanation
Indices: 37206812--37207018 Score: 179
Period size: 53 Copynumber: 3.8 Consensus size: 55
37206802 TCCTTTTGTA
*
37206812 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGCATCCTTGCCTTAT-G-
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTATAGT
* * * * * * *
37206865 AACTCACCATTACCATGCCTTGATATGGTCTTACATGGGATCTTTTCCTTATAGT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTATAGT
** * * *** * *
37206920 AGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATGTCCTTGCCTTGTA-A
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTATAGT
* * * * *
37206974 AACATACCAATT-CCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGCATCCTT
37207019 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 33, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 44 0.37
54 33 0.28
55 41 0.35
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (55 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTATAGT
Found at i:37209159 original size:27 final size:27
Alignment explanation
Indices: 37209122--37209315 Score: 250
Period size: 27 Copynumber: 7.2 Consensus size: 27
37209112 AGCATGGCTG
* * * *
37209122 CCAGAACAGATA-ATGTGACAAAGTCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
37209148 CCAGATACAGATA-ATCGTGGCAGGGCCA
1 CCAGAT-CAGATATAT-GTGGCAGAGCCA
37209176 CCAGAAT-AGATATATGTGGCAGAGCCA
1 CCAG-ATCAGATATATGTGGCAGAGCCA
*
37209203 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
37209230 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
37209257 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
* *
37209284 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
37209311 CCAGA
1 CCAGA
37209316 ACACTTCCTC
Statistics
Matches: 155, Mismatches: 8, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
26 7 0.05
27 132 0.85
28 14 0.09
29 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
CCAGATCAGATATATGTGGCAGAGCCA
Found at i:37210969 original size:26 final size:26
Alignment explanation
Indices: 37210933--37211042 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
37210923 CATGAAATTC
37210933 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
37210959 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
37210985 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
37211011 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
37211037 TTATCA
1 TTATCA
37211043 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:37217989 original size:40 final size:40
Alignment explanation
Indices: 37217930--37218071 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
37217920 AAATTGAATG
* * *
37217930 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
37217970 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
37218010 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
37218050 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
37218072 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:37218072 original size:40 final size:39
Alignment explanation
Indices: 37217969--37218097 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
37217959 TGCTGGAAAT
* * *
37217969 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
37218009 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
37218049 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
37218089 TATATCCGG
1 TATATCCGG
37218098 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:37221128 original size:20 final size:20
Alignment explanation
Indices: 37221103--37221146 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
37221093 ATTTTGATAA
37221103 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
37221123 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
37221143 ACAT
1 ACAT
37221147 TAGGTGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:37221230 original size:23 final size:23
Alignment explanation
Indices: 37221200--37221365 Score: 242
Period size: 23 Copynumber: 7.1 Consensus size: 23
37221190 AGGAAGTGCA
37221200 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
37221223 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
37221246 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
37221269 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
37221292 AAAGGGCTTATGCCCCAGTGATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
**
37221316 AAAGGGCTTATGCCCCAGTTACAA
1 AAAGGGCTTATGCCCCAGTTA-TT
* * *
37221340 AAAGGGATTTTGCCCCAGTTACT
1 AAAGGGCTTATGCCCCAGTTATT
37221363 AAA
1 AAA
37221366 AGAGGCTAGG
Statistics
Matches: 131, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
23 91 0.69
24 40 0.31
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:37221617 original size:31 final size:31
Alignment explanation
Indices: 37221579--37221642 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
37221569 CGTTTATAGT
37221579 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
37221610 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37221641 AA
1 AA
37221643 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:37227538 original size:27 final size:29
Alignment explanation
Indices: 37227462--37227576 Score: 100
Period size: 27 Copynumber: 4.1 Consensus size: 29
37227452 AGCATGGCTG
* * *
37227462 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATATGTGGCAGTGCCA
* *
37227489 CCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGATACAGATAATATGTGGCAGTGCCA
*
37227518 CCAGA-ACAGA-AATATGTGGCAAG-GCTA
1 CCAGATACAGATAATATGTGGC-AGTGCCA
*
37227545 CCAGA-ACAGATAATTTGTGGCA-TAGCCA
1 CCAGATACAGATAATATGTGGCAGT-GCCA
37227573 CCAG
1 CCAG
37227577 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
27 33 0.46
28 24 0.33
29 15 0.21
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (29 bp):
CCAGATACAGATAATATGTGGCAGTGCCA
Found at i:37227562 original size:55 final size:56
Alignment explanation
Indices: 37227462--37227576 Score: 148
Period size: 55 Copynumber: 2.1 Consensus size: 56
37227452 AGCATGGCTG
* *
37227462 CCAGATACAGAAAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGAAAATGTGACAGAGGCACCAGATACAGATAATTTGTGGCA-TAGCCA
*
37227518 CCAGA-ACAGAAATATGTGGCA-AGGCTACCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGAAA-ATGTGACAGAGGC-ACCAGATACAGATAATTTGTGGCATAGCCA
37227573 CCAG
1 CCAG
37227577 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
54 1 0.02
55 34 0.64
56 18 0.34
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (56 bp):
CCAGATACAGAAAATGTGACAGAGGCACCAGATACAGATAATTTGTGGCATAGCCA
Found at i:37227575 original size:28 final size:28
Alignment explanation
Indices: 37227487--37227576 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 28
37227477 GTGACAGAGT
*
37227487 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGA-ACAGATAATTTGTGGCA-TAGC
*
37227516 CACCAGAACAGA-AATATGTGGCA-AGGC
1 CACCAGAACAGATAATTTGTGGCATA-GC
*
37227543 TACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCATAGC
37227571 CACCAG
1 CACCAG
37227577 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
27 22 0.42
28 22 0.42
29 8 0.15
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCATAGC
Found at i:37227729 original size:28 final size:28
Alignment explanation
Indices: 37227682--37227774 Score: 152
Period size: 28 Copynumber: 3.3 Consensus size: 28
37227672 AAATTAAACC
*
37227682 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
*
37227710 TAGGGGTATAATGGTAATTTTGCAAACA
1 TAGGGGTATAATGGTAATTTTGCATACA
37227738 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
37227766 TAGGGGTAT
1 TAGGGGTAT
37227775 TCTAGTACAT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 1 0.02
28 60 0.98
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:37233177 original size:11 final size:10
Alignment explanation
Indices: 37233158--37233190 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
37233148 GTACAGACAG
37233158 ATAATTCAGA
1 ATAATTCAGA
37233168 ATATATTCAGA
1 ATA-ATTCAGA
37233179 A-AATTCAGA
1 ATAATTCAGA
37233188 ATA
1 ATA
37233191 CTTACAGGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 8 0.38
10 5 0.24
11 8 0.38
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (10 bp):
ATAATTCAGA
Found at i:37234310 original size:55 final size:56
Alignment explanation
Indices: 37234245--37234359 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
37234235 AGCATGGCTG
* *
37234245 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
37234301 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
37234356 CCAG
1 CCAG
37234360 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:37234322 original size:27 final size:27
Alignment explanation
Indices: 37234270--37234359 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
37234260 GTGACAGAGT
37234270 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
37234299 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
37234326 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
37234354 CACCAG
1 CACCAG
37234360 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:37234530 original size:28 final size:28
Alignment explanation
Indices: 37234484--37234549 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
37234474 GAGGTCATTT
37234484 CATACATA-GGGTATAATGGTAATTTTG
1 CATACATAGGGGTATAATGGTAATTTTG
37234511 CATACATAGGGGTATAATGGTAATTTTG
1 CATACATAGGGGTATAATGGTAATTTTG
37234539 CATACATAGGG
1 CATACATAGGG
37234550 TATTCTAGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 8 0.21
28 30 0.79
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (28 bp):
CATACATAGGGGTATAATGGTAATTTTG
Found at i:37234814 original size:8 final size:8
Alignment explanation
Indices: 37234798--37234829 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
37234788 GCCCAAAAAC
37234798 CGGCTTTT
1 CGGCTTTT
*
37234806 CGGCATTT
1 CGGCTTTT
37234814 CGGCTTTT
1 CGGCTTTT
37234822 CGGCTTTT
1 CGGCTTTT
37234830 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:37236847 original size:46 final size:43
Alignment explanation
Indices: 37236701--37236869 Score: 160
Period size: 46 Copynumber: 3.7 Consensus size: 43
37236691 ATTGTGGGCT
*
37236701 AGTGTAAGACATGTCTGGGACCTGCATCGGCCACATTATGAG-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-G--ACATTA-GAGAAGCC
* * * *
37236747 AATGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACATT-AGA-GA-AGCC
*
37236795 AGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACATT-AGA-G-AAGCC
*
37236841 AGTGTAAGACATGTTTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
37236870 GCTAAAAGAT
Statistics
Matches: 103, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
45 6 0.06
46 53 0.51
47 29 0.28
48 15 0.15
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATTAGAGAAGCC
Found at i:37244345 original size:66 final size:68
Alignment explanation
Indices: 37244216--37244345 Score: 183
Period size: 66 Copynumber: 1.9 Consensus size: 68
37244206 GGGATGTATC
* *
37244216 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATCTAGCTAGGTCGCATGAGTGATACCAAGTGA
37244281 AGGACA
63 AGGACA
* *
37244287 CCATGTAGACAAGAGAGCTAC-GAGATAAATCT-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAATCTAGCTAGGTCGCATGAGTGATACCAAGTG
37244346 TTCACCATGT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
66 24 0.44
67 10 0.18
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (68 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATCTAGCTAGGTCGCATGAGTGATACCAAGTGAAGG
ACA
Found at i:37247022 original size:12 final size:12
Alignment explanation
Indices: 37246983--37247014 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
37246973 AAGATCAGAA
37246983 GCTAGAGCACCT
1 GCTAGAGCACCT
37246995 GCTAGAGCACCT
1 GCTAGAGCACCT
37247007 GCTAGAGC
1 GCTAGAGC
37247015 TTCTGCTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.31, G:0.28, T:0.16
Consensus pattern (12 bp):
GCTAGAGCACCT
Found at i:37249730 original size:54 final size:54
Alignment explanation
Indices: 37249648--37249756 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
37249638 AGATGGTCAG
*
37249648 TCGGAAAGAGTAATCCAGGTACTCGAGGATATGCTTAGATGCTGTGTCTTAGAA
1 TCGGAAAGAGTAATCCAGGTACTCGAGGATATGCTTAGATGCTGTCTCTTAGAA
37249702 TCGGAAAGAGTAATCCAGGTACTCGAGGATATGCTTAGATGCTGTCTCTTAGAA
1 TCGGAAAGAGTAATCCAGGTACTCGAGGATATGCTTAGATGCTGTCTCTTAGAA
37249756 T
1 T
37249757 TTGGAGGTAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (54 bp):
TCGGAAAGAGTAATCCAGGTACTCGAGGATATGCTTAGATGCTGTCTCTTAGAA
Found at i:37255149 original size:43 final size:42
Alignment explanation
Indices: 37254995--37255150 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 42
37254985 TGTGTTTTCG
* * * *
37254995 TGTAAGACCACATCTGGGACATTGGCATCGACT-TATAATTTA
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGATTCA
* * * * *
37255037 TGTGTAGACCATGTCTGGGACATCGGTATCG-TATTTGATTTCG
1 TGT-AAGACCACGTCTGGGACATTGGCATCGATATTTGA-TTCA
* * *
37255080 TGTAAGACC-CTGTCCGGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATT-CA
37255123 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
37255151 TATATGAGCT
Statistics
Matches: 87, Mismatches: 20, Indels: 13
0.73 0.17 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.31
43 58 0.67
44 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTCA
Found at i:37255906 original size:23 final size:24
Alignment explanation
Indices: 37255864--37255908 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
37255854 TGAATTGAGG
*
37255864 TTATGATTTTGGTATCATTTTGAC
1 TTATGATTTTGGCATCATTTTGAC
*
37255888 TTATGA-TTTGGCATGATTTTG
1 TTATGATTTTGGCATCATTTTG
37255909 TTATAGTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.20, C:0.07, G:0.20, T:0.53
Consensus pattern (24 bp):
TTATGATTTTGGCATCATTTTGAC
Found at i:37256625 original size:23 final size:23
Alignment explanation
Indices: 37256595--37256649 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
37256585 TTCTGATATG
**
37256595 TTCGGTGATGCCTTTAACCCTAT
1 TTCGGTGACACCTTTAACCCTAT
*
37256618 TTCGGTGACACCTTTAACTCTAT
1 TTCGGTGACACCTTTAACCCTAT
*
37256641 TCCGGTGAC
1 TTCGGTGAC
37256650 GTATGCGGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.36
Consensus pattern (23 bp):
TTCGGTGACACCTTTAACCCTAT
Found at i:37258591 original size:42 final size:42
Alignment explanation
Indices: 37258496--37258645 Score: 119
Period size: 43 Copynumber: 3.5 Consensus size: 42
37258486 CCAACGTCCC
* * * * * *
37258496 AGACGTGGTCTTACATGTAATCA-AACATCGATGCCACTGCCCT
1 AGACATGGTCTTACACGAAATCAGAA-ATTGATGCCAAT-TCCT
* **
37258539 AGA-ATGGGTCTTACACGAAATCAGATA-TGATGCTGATGTCCT
1 AGACAT-GGTCTTACACGAAATCAGAAATTGATGCCAAT-TCCT
*
37258581 AGACATGGTCTTACACGTAAAAT-AGAAATTGATGCCAATTCCC
1 AGACATGGTCTTACACG--AAATCAGAAATTGATGCCAATTCCT
*
37258624 AGACGTGGTCTTACACGAAATC
1 AGACATGGTCTTACACGAAATC
37258646 CTATGGCATG
Statistics
Matches: 86, Mismatches: 14, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
41 4 0.05
42 25 0.29
43 44 0.51
44 13 0.15
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (42 bp):
AGACATGGTCTTACACGAAATCAGAAATTGATGCCAATTCCT
Found at i:37260794 original size:42 final size:44
Alignment explanation
Indices: 37260728--37260839 Score: 120
Period size: 42 Copynumber: 2.6 Consensus size: 44
37260718 TCCTACATGT
* * *
37260728 AATCAAATATCGATGTCATTGTCCCAAATAGGGTCTTACAC-AA
1 AATCAAATATCGATGCCAATGTCCCAAACAGGGTCTTACACGAA
* * * *
37260771 AATCATATAT-GATGCCAATGTCCCAGACATGGTCTTACACGTA
1 AATCAAATATCGATGCCAATGTCCCAAACAGGGTCTTACACGAA
* * *
37260814 AATCACAGATCGATGCCAACGTCCCA
1 AATCAAATATCGATGCCAATGTCCCA
37260840 GATGTGGTCT
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
42 25 0.44
43 18 0.32
44 14 0.25
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (44 bp):
AATCAAATATCGATGCCAATGTCCCAAACAGGGTCTTACACGAA
Found at i:37260838 original size:44 final size:44
Alignment explanation
Indices: 37260697--37260851 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 44
37260687 ATCTTGTACA
* * * * *
37260697 ATGCCAACATCCTAGACGTGGTCCTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* ** * * * * *
37260740 ATGTCATTGTCCCAAATAGGGTCTTACAC-AAAATCATATAT-G
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* * *
37260782 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAGATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
**
37260826 ATGCCAACGTCCCAGATGTGGTCTTA
1 ATGCCAACGTCCCAGACATGGTCTTA
37260852 AACGATAACA
Statistics
Matches: 85, Mismatches: 24, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
42 25 0.29
43 36 0.42
44 24 0.28
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
Found at i:37263852 original size:9 final size:9
Alignment explanation
Indices: 37263840--37263916 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
37263830 TTTGATAAAC
37263840 ATGATATGT
1 ATGATATGT
*
37263849 ATGATATGCAC
1 ATGATATG--T
37263860 ATGATATGT
1 ATGATATGT
*
37263869 ATGATATGCAC
1 ATGATATG--T
*
37263880 ATGACATGT
1 ATGATATGT
*
37263889 ATGATATGCAC
1 ATGATATG--T
37263900 ATGATATGT
1 ATGATATGT
37263909 ATGATATG
1 ATGATATG
37263917 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:37263865 original size:11 final size:11
Alignment explanation
Indices: 37263849--37263920 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
37263839 CATGATATGT
37263849 ATGATATGCAC
1 ATGATATGCAC
*
37263860 ATGATATG--T
1 ATGATATGCAC
37263869 ATGATATGCAC
1 ATGATATGCAC
* *
37263880 ATGACATG--T
1 ATGATATGCAC
37263889 ATGATATGCAC
1 ATGATATGCAC
*
37263900 ATGATATG--T
1 ATGATATGCAC
37263909 ATGATATGCAC
1 ATGATATGCAC
37263920 A
1 A
37263921 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:37263928 original size:20 final size:20
Alignment explanation
Indices: 37263838--37263920 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
37263828 ATTTTGATAA
37263838 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
37263858 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
37263878 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
37263898 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
37263918 ACA
1 ACA
37263921 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:37264063 original size:24 final size:24
Alignment explanation
Indices: 37263974--37264091 Score: 163
Period size: 23 Copynumber: 5.0 Consensus size: 24
37263964 GAGGAAGTGC
37263974 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
37263998 -AAAGGGCTTATGCCCCGGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
37264021 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
37264044 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
37264068 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
37264092 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
23 50 0.58
24 19 0.22
25 17 0.20
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:37268681 original size:31 final size:31
Alignment explanation
Indices: 37268640--37268703 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
37268630 CCTTTTCATA
* *
37268640 TTTCATATTTCATAACACTGGGTCAAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
** *
37268671 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
37268702 TT
1 TT
37268704 ACTGTAAATG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCAAAGCCT
Found at i:37268949 original size:24 final size:24
Alignment explanation
Indices: 37268916--37269062 Score: 190
Period size: 24 Copynumber: 6.2 Consensus size: 24
37268906 GGCCTTGCCT
* *
37268916 CTTTTAATAACTGGGGAAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
37268940 CTTTTTATAACTGAGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
37268964 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* * *
37268987 CTGTTGATAATTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
37269011 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
37269035 C-TTTAATAACTGGAGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
37269058 CTTTT
1 CTTTT
37269063 TCACTTCCTC
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
23 41 0.39
24 65 0.61
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:37268972 original size:47 final size:46
Alignment explanation
Indices: 37268918--37269061 Score: 173
Period size: 47 Copynumber: 3.1 Consensus size: 46
37268908 CCTTGCCTCT
* * *
37268918 TTTAATAACTGGGGAAAAAGCCCTTTTTATAACTGAGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTG-GGCATAAGCCC
* * * *
37268965 TTTAATAACTGGGGCGTAAGCCCTGTTGATAATTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACT-GGGCATAAGCCC
*
37269012 TTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGAGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGG-GCATAAGCCC
37269059 TTT
1 TTT
37269062 TTCACTTCCT
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
46 5 0.06
47 56 0.67
48 22 0.27
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (46 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCC
Found at i:37269137 original size:20 final size:20
Alignment explanation
Indices: 37269112--37269178 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
37269102 TTATTAATAC
37269112 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
37269132 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
37269152 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
37269172 ACCATGT
1 ATCATGT
37269179 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:37269143 original size:11 final size:11
Alignment explanation
Indices: 37269112--37269167 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
37269102 TTATTAATAC
37269112 ATCATGTGCAT
1 ATCATGTGCAT
*
37269123 ATCA--TACAT
1 ATCATGTGCAT
37269132 ATCATGTGCAT
1 ATCATGTGCAT
*
37269143 ATCA--TACAT
1 ATCATGTGCAT
*
37269152 GTCATGTGCAT
1 ATCATGTGCAT
37269163 ATCAT
1 ATCAT
37269168 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:37276923 original size:40 final size:40
Alignment explanation
Indices: 37276857--37277023 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
37276847 AAATTGAATG
* * *
37276857 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
37276896 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
37276936 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
37276976 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
37277016 ATATCCGG
1 ATATCCGG
37277024 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:37284902 original size:40 final size:40
Alignment explanation
Indices: 37284836--37285002 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
37284826 AAATTGAATG
* * *
37284836 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
37284875 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
37284915 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
37284955 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
37284995 ATATCCGG
1 ATATCCGG
37285003 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:37288228 original size:27 final size:27
Alignment explanation
Indices: 37288191--37288357 Score: 212
Period size: 27 Copynumber: 6.2 Consensus size: 27
37288181 AGCATGGCTG
* * *
37288191 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGATCAGATATATGTGGCAGAGCCA
* *
37288217 CCAGATACAGATA-ATCGTGGTAGGGCCA
1 CCAGAT-CAGATATAT-GTGGCAGAGCCA
*
37288245 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
37288272 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
37288299 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
* *
37288326 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
37288353 CCAGA
1 CCAGA
37288358 ACACTTCCTC
Statistics
Matches: 127, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
26 5 0.04
27 107 0.84
28 15 0.12
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CCAGATCAGATATATGTGGCAGAGCCA
Found at i:37288250 original size:54 final size:54
Alignment explanation
Indices: 37288191--37288360 Score: 243
Period size: 54 Copynumber: 3.1 Consensus size: 54
37288181 AGCATGGCTG
* * * * * *
37288191 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGTAGGGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
37288245 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
* * *
37288299 CCAGATCAGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
37288353 CCAGAACA
1 CCAGAACA
37288361 CTTCCTCCAT
Statistics
Matches: 105, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
54 87 0.83
55 18 0.17
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
Found at i:37288488 original size:26 final size:27
Alignment explanation
Indices: 37288459--37288534 Score: 84
Period size: 26 Copynumber: 2.8 Consensus size: 27
37288449 CAAAATTAAC
*
37288459 CCTAGGGGTATAACGGTAATTTTGC-A
1 CCTAGGGGTATAACGGTAATTTTCCAA
37288485 CCTAGGGGTATAA-GAGTAATTTTCCATA
1 CCTAGGGGTATAACG-GTAATTTTCCA-A
* * *
37288513 CATAGGGGTATTACAGTAATTT
1 CCTAGGGGTATAACGGTAATTT
37288535 AGCTACTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
25 1 0.02
26 22 0.52
28 19 0.45
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (27 bp):
CCTAGGGGTATAACGGTAATTTTCCAA
Found at i:37290013 original size:26 final size:26
Alignment explanation
Indices: 37289975--37290058 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
37289965 CATGAAATTC
* *
37289975 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
37290001 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
37290027 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
37290053 TTATCA
1 TTATCA
37290059 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:37295284 original size:17 final size:18
Alignment explanation
Indices: 37295262--37295295 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
37295252 TTATTTGGAT
37295262 CGTGTGGG-CCACACAGA
1 CGTGTGGGCCCACACAGA
37295279 CGTGTGGGCCCACACAG
1 CGTGTGGGCCCACACAG
37295296 GTGAACTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.21, C:0.32, G:0.35, T:0.12
Consensus pattern (18 bp):
CGTGTGGGCCCACACAGA
Found at i:37297059 original size:20 final size:22
Alignment explanation
Indices: 37297021--37297072 Score: 74
Period size: 20 Copynumber: 2.5 Consensus size: 22
37297011 AGGCATATGC
*
37297021 CCATGTGAA-ATAGGGACACGA
1 CCATGTGAACATAGGGACACAA
37297042 CCATGTGAACA-A-GGACACAA
1 CCATGTGAACATAGGGACACAA
37297062 CCATGTGAACA
1 CCATGTGAACA
37297073 GGTCGTGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 18 0.62
21 10 0.34
22 1 0.03
ACGTcount: A:0.40, C:0.23, G:0.23, T:0.13
Consensus pattern (22 bp):
CCATGTGAACATAGGGACACAA
Found at i:37300520 original size:27 final size:26
Alignment explanation
Indices: 37300481--37300544 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 26
37300471 GCATGGTTGG
*
37300481 CAGAACAGATATTGTAAG-AGAGTCAC
1 CAGAACAGATATTGT-AGCAGAGCCAC
*
37300507 CAGATACAGATATTGTGGCAGAGCCAC
1 CAGA-ACAGATATTGTAGCAGAGCCAC
37300534 CAGAACAGATA
1 CAGAACAGATA
37300545 ATCTGGCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 12 0.35
27 22 0.65
ACGTcount: A:0.41, C:0.19, G:0.23, T:0.17
Consensus pattern (26 bp):
CAGAACAGATATTGTAGCAGAGCCAC
Found at i:37300551 original size:26 final size:27
Alignment explanation
Indices: 37300499--37300559 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
37300489 ATATTGTAAG
* * *
37300499 AGAGTCACCAGATACAGATATTGTGGC
1 AGAGCCACCAGATACAGATAATCTGGC
37300526 AGAGCCACCAGA-ACAGATAATCTGGC
1 AGAGCCACCAGATACAGATAATCTGGC
*
37300552 AAAGCCAC
1 AGAGCCAC
37300560 TTAACAGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.15
Consensus pattern (27 bp):
AGAGCCACCAGATACAGATAATCTGGC
Found at i:37300752 original size:22 final size:22
Alignment explanation
Indices: 37300718--37300782 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
37300708 GCAAATACGT
*
37300718 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
37300740 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
37300762 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
37300783 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:37301186 original size:27 final size:27
Alignment explanation
Indices: 37301156--37301640 Score: 545
Period size: 27 Copynumber: 18.0 Consensus size: 27
37301146 TACCTCACGA
*
37301156 GGGTATCTCGATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
37301183 GGGTATTTCAGCAT--TTCTACCCTACAA
1 GGGTATTTC-G-ATAATTCTACCCTACAG
* * *
37301210 GGGTATTTCGGTAATTCTATCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
37301237 GGGTATTTC-AGTAATTCTACCTTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
37301264 GGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
37301291 GGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* * * *
37301318 TGGTATTTCGATAATTCTAACTTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
37301345 GGGTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
* * * *
37301372 GGGTATTTCGGTAATTCTATCTTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
*
37301399 GAGTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
* * *
37301426 GGGTATTTTGGTAATTCTACCTTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
37301453 GGGTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
* * *
37301480 TGGTATTTCGGTAATTCTACCTTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
37301507 GGGTATTTCGGTAATTCTACCTTAGAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
37301534 GGGTATTTCGATAATTCTACCTTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
37301561 GGGTATTTC-AGTAATTCTACCCTACA-
1 GGGTATTTCGA-TAATTCTACCCTACAG
* **
37301587 GGGTATTTCGGTAATTCTACATTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
37301614 GGGTATTTCAATAATGCTAGCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
37301641 ATATGAGATT
Statistics
Matches: 388, Mismatches: 55, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
25 1 0.00
26 25 0.06
27 358 0.92
28 2 0.01
29 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:37301213 original size:54 final size:54
Alignment explanation
Indices: 37301155--37301639 Score: 654
Period size: 54 Copynumber: 9.0 Consensus size: 54
37301145 TTACCTCACG
* * * * *
37301155 AGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGCATTTCTACCCTACA
1 AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* *
37301209 AGGGTATTTCGGTAATTCTATCC-TATAGGGGTATTTCAGTAATTCTACCTTACA
1 AGGGTATTTCGGTAATTCTA-CCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* * *
37301263 GGGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAATAATTCTACCCTAC-
1 AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* * *
37301316 AGTGGTATTTCGATAATTCTAACTTACAAGGGTATTTCAGTAATTCTACCCTACA
1 AG-GGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* * * *
37301371 GGGGTATTTCGGTAATTCTATCTTACAAGAGTATTTCAGTAATTCTACCCTACA
1 AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* *
37301425 GGGGTATTTTGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTAC-
1 AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* * *
37301478 AGTGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCTTAGA
1 AG-GGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* * *
37301533 GGGGTATTTCGATAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTAC-
1 AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* * * *
37301586 AGGGTATTTCGGTAATTCTACATTACAGGGGTATTTCAATAATGCTAGCCTACA
1 AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
37301640 GATATGAGAT
Statistics
Matches: 383, Mismatches: 41, Indels: 14
0.87 0.09 0.03
Matches are distributed among these distances:
53 50 0.13
54 329 0.86
55 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
Found at i:37303466 original size:18 final size:18
Alignment explanation
Indices: 37303445--37303480 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
37303435 TAAACAATGC
*
37303445 AGTAACAGTAATTAGTAT
1 AGTAACAGTAAGTAGTAT
37303463 AGTAACAGTAAGTAGTAT
1 AGTAACAGTAAGTAGTAT
37303481 GCAAGTCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (18 bp):
AGTAACAGTAAGTAGTAT
Found at i:37303841 original size:27 final size:27
Alignment explanation
Indices: 37303809--37304023 Score: 245
Period size: 27 Copynumber: 8.0 Consensus size: 27
37303799 AAATATACAT
* **
37303809 CACATAAGGGCAAAACAGTTATCCTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
37303836 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
37303863 CTCATAAGGGCAAAACCGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
37303890 CACGTAAGGGAAAAACCGTCATTTTAA
1 CACATAAGGGCAAAACAGTCATTTTAC
*
37303917 CACATAAGGG-AAAAGCAGTCATTTTGC
1 CACATAAGGGCAAAA-CAGTCATTTTAC
* *
37303944 CACATAAGGGCAAAACCGTCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
37303971 CACATAATGGAAAAATCA-TCATTTTAA
1 CACATAAGGGCAAAA-CAGTCATTTTAC
*
37303998 TACATAAGGGCAAAACAGTCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
37304024 ACTTATAGGG
Statistics
Matches: 159, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.04
27 148 0.93
28 5 0.03
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:37304042 original size:27 final size:27
Alignment explanation
Indices: 37304012--37304154 Score: 153
Period size: 27 Copynumber: 5.3 Consensus size: 27
37304002 TAAGGGCAAA
* *
37304012 ACAGTCATTTTAACTTATAGGGGTATT
1 ACAGTCATTTTACCCTATAGGGGTATT
*
37304039 ACAGTCATTTTACCCTATAAGGGTATT
1 ACAGTCATTTTACCCTATAGGGGTATT
* *
37304066 ATAGTCATTTTACCTTAT-GGGGTATT
1 ACAGTCATTTTACCCTATAGGGGTATT
*** *
37304092 TTGGTCATTTTACCCTATGGGGGTATT
1 ACAGTCATTTTACCCTATAGGGGTATT
* * *
37304119 TCAGTCATATTACCCTATGGGGGTATT
1 ACAGTCATTTTACCCTATAGGGGTATT
* *
37304146 TCGGTCATT
1 ACAGTCATT
37304155 ATTTCGTCCC
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 22 0.22
27 79 0.78
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.41
Consensus pattern (27 bp):
ACAGTCATTTTACCCTATAGGGGTATT
Found at i:37304050 original size:81 final size:81
Alignment explanation
Indices: 37303836--37304023 Score: 279
Period size: 81 Copynumber: 2.3 Consensus size: 81
37303826 GTTATCCTAC
* *
37303836 CACATAAGGGCAAAATAGTCATTTTACCTCATAAGGGCAAAACCGTCATTTTACCACGTAAGGGA
1 CACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACCGTCATTTTACCACATAAGGGA
*
37303901 AAAACCGTCATTTTAA
66 AAAACCATCATTTTAA
* * * *
37303917 CACATAAGGG-AAAAGCAGTCATTTTGCCACATAAGGGCAAAACCGTCATTTTATCACATAATGG
1 CACATAAGGGCAAAA-CAGTCATTTTACCTCATAAGGGCAAAACCGTCATTTTACCACATAAGGG
*
37303981 AAAAATCATCATTTTAA
65 AAAAACCATCATTTTAA
*
37303998 TACATAAGGGCAAAACAGTCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
37304024 ACTTATAGGG
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 4 0.04
81 87 0.92
82 4 0.04
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (81 bp):
CACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACCGTCATTTTACCACATAAGGGA
AAAACCATCATTTTAA
Found at i:37304059 original size:54 final size:53
Alignment explanation
Indices: 37304001--37304109 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 53
37303991 ATTTTAATAC
37304001 ATAAGGGCAAAACAGTCATTTTAACTTATAGGGGTATTACAGTCATTTTACCCT
1 ATAAGGGCAAAACAGTCATTTTAACTTAT-GGGGTATTACAGTCATTTTACCCT
* ** * * ***
37304055 ATAAGGGTATTATAGTCATTTTACCTTATGGGGTATTTTGGTCATTTTACCCT
1 ATAAGGGCAAAACAGTCATTTTAACTTATGGGGTATTACAGTCATTTTACCCT
37304108 AT
1 AT
37304110 GGGGGTATTT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 23 0.49
54 24 0.51
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (53 bp):
ATAAGGGCAAAACAGTCATTTTAACTTATGGGGTATTACAGTCATTTTACCCT
Found at i:37304108 original size:53 final size:54
Alignment explanation
Indices: 37304013--37304154 Score: 180
Period size: 53 Copynumber: 2.6 Consensus size: 54
37304003 AAGGGCAAAA
* * *
37304013 CAGTCATTTTAACTTATAGGGGTATTACAGTCATTTTACCCTATAAGGGTATTAT
1 CAGTCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATAAGGGTATT-T
* **
37304068 -AGTCATTTTACCTTAT-GGGGTATTTTGGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATAAGGGTATTT
* * *
37304120 CAGTCATATTACCCTATGGGGGTATTTCGGTCATT
1 CAGTCATTTTACCTTATAGGGGTATTTCGGTCATT
37304155 ATTTCGTCCC
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
52 1 0.01
53 44 0.58
54 31 0.41
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (54 bp):
CAGTCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATAAGGGTATTT
Found at i:37308811 original size:43 final size:43
Alignment explanation
Indices: 37308722--37308834 Score: 124
Period size: 43 Copynumber: 2.6 Consensus size: 43
37308712 ATCGATATGT
* * *
37308722 GATTACATGTAAGAACATGTCTGGGACATTAGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTATTGA
*
37308765 GATTACGTGTAAGACCATGTTTGGGACATT-GCCATCGTTATT-A
1 GATTACGTGTAAGACCATGTCTGGGACATTAG-CATCG-TATTGA
* *
37308808 GATTTCGTGTCAA-ACCCTGTCTGGGAC
1 GATTACGTGT-AAGACCATGTCTGGGAC
37308835 GGAGGCATCG
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 1 0.02
43 53 0.88
44 6 0.10
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTATTGA
Found at i:37318762 original size:88 final size:89
Alignment explanation
Indices: 37318660--37318828 Score: 232
Period size: 88 Copynumber: 1.9 Consensus size: 89
37318650 TTTTGAAAGC
* * *
37318660 TTACTTTGTGTGTGTTTATATTATTTTATAGATCATCGAAG-GTACCAGAAGATCGGGAATCGTC
1 TTACTTTGTGTGTGTTTACATTATTTTATAGATCATCGAAGCGTACCAGAACATCGAGAATCGTC
37318724 GAGGATCATCACCACAACATTATT
66 GAGGATCATCACCACAACATTATT
* * * * * * * *
37318748 TTACTTTTTGTGTGTTTGCATTGTTTTATAGATCATCGAAGCTTACCGGAACCTTGAGAATTGTC
1 TTACTTTGTGTGTGTTTACATTATTTTATAGATCATCGAAGCGTACCAGAACATCGAGAATCGTC
37318813 GAGGATCATCACCACA
66 GAGGATCATCACCACA
37318829 CTATCGAACT
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
88 37 0.54
89 32 0.46
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (89 bp):
TTACTTTGTGTGTGTTTACATTATTTTATAGATCATCGAAGCGTACCAGAACATCGAGAATCGTC
GAGGATCATCACCACAACATTATT
Done.