Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 152 of 292
Found at i:45029365 original size:21 final size:21
Alignment explanation
Indices: 45029339--45029381 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
45029329 ACTAATAGTG
45029339 TTAGATTACAAGTTATTTGCA
1 TTAGATTACAAGTTATTTGCA
45029360 TTAGATTACAAGTTATTTGCA
1 TTAGATTACAAGTTATTTGCA
45029381 T
1 T
45029382 GCAAATATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (21 bp):
TTAGATTACAAGTTATTTGCA
Found at i:45029424 original size:16 final size:16
Alignment explanation
Indices: 45029384--45029424 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
45029374 ATTTGCATGC
*
45029384 AAATATTGTATACACT
1 AAATATTTTATACACT
*
45029400 ATATATTTTATACACT
1 AAATATTTTATACACT
*
45029416 AAATCTTTT
1 AAATATTTT
45029425 CAGATTATCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.46
Consensus pattern (16 bp):
AAATATTTTATACACT
Found at i:45045158 original size:32 final size:32
Alignment explanation
Indices: 45045122--45045185 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
45045112 AGGTTAGCAT
45045122 CTTTCATAGCTTGAAAGTTTTCCATTTGTCTA
1 CTTTCATAGCTTGAAAGTTTTCCATTTGTCTA
45045154 CTTTCATAGCTTGAAAGTTTTCCATTTGTCTA
1 CTTTCATAGCTTGAAAGTTTTCCATTTGTCTA
45045186 TCTCGGAGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (32 bp):
CTTTCATAGCTTGAAAGTTTTCCATTTGTCTA
Found at i:45050246 original size:18 final size:18
Alignment explanation
Indices: 45050223--45050267 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
45050213 CTAAAGTGCT
45050223 TAAATTGAAAGTAGGGAC
1 TAAATTGAAAGTAGGGAC
45050241 TAAATTGAAAGTAGGGAC
1 TAAATTGAAAGTAGGGAC
45050259 TAAATTGAA
1 TAAATTGAA
45050268 TAAGTTGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.47, C:0.04, G:0.24, T:0.24
Consensus pattern (18 bp):
TAAATTGAAAGTAGGGAC
Found at i:45051458 original size:41 final size:41
Alignment explanation
Indices: 45051413--45051530 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
45051403 TGAAAGATAA
45051413 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
45051454 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
45051484 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
45051525 ATGTAG
1 ATGTAG
45051531 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:45051469 original size:71 final size:71
Alignment explanation
Indices: 45051381--45051544 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
45051371 GAGATGTATC
45051381 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
45051446 AGGACA
66 AGGACA
45051452 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
45051517 AGGACA
66 AGGACA
45051523 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
45051545 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:45058867 original size:51 final size:51
Alignment explanation
Indices: 45058737--45058931 Score: 259
Period size: 51 Copynumber: 3.8 Consensus size: 51
45058727 TAGATAAGGC
* *
45058737 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTT-AA-C
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTG-CTTGAAGT
* * * *
45058787 CATCTGATACACATAGTAGCTTGCACTTAGTACTACACACGTGCTTGAAGT
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGCTTGAAGT
* * * * *
45058838 TATCAGGTATGCATAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGT
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGCTTGAAGT
*
45058889 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTG
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTG
45058932 ACCTCACAAT
Statistics
Matches: 125, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
49 3 0.02
50 40 0.32
51 82 0.66
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (51 bp):
TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGCTTGAAGT
Found at i:45059211 original size:27 final size:27
Alignment explanation
Indices: 45059181--45059235 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
45059171 TCATACAACC
* *
45059181 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
45059208 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
45059235 C
1 C
45059236 CACATGACAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.38
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:45081295 original size:47 final size:46
Alignment explanation
Indices: 45081226--45081400 Score: 172
Period size: 47 Copynumber: 3.7 Consensus size: 46
45081216 GTATAATACG
*
45081226 GATGCCATATCCCAGACATGGTCTTACACTGGCTCATCCATCA-AGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCCAT-ATAGTC
* *
45081273 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATTCGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-CATA-TAGT--C
* * * * * * *
45081323 GATGCCATGTCCCAAACATAGTCTTACATTGACACCTCTATATGTGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCCATAT-AGTC
*
45081371 GATGCCATGTCCAAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
45081401 AACACATCTT
Statistics
Matches: 106, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
46 3 0.03
47 36 0.34
48 29 0.27
49 1 0.01
50 34 0.32
51 3 0.03
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCCATATAGTC
Found at i:45081395 original size:48 final size:50
Alignment explanation
Indices: 45081270--45081401 Score: 148
Period size: 50 Copynumber: 2.7 Consensus size: 50
45081260 CATCCATCAA
* *
45081270 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATTCGT
1 GTCGATGCCATGTCCAAGACATGGTCTTACACTAGCCCTCACATATTCGT
* * * *
45081320 GCCGATGCCATGTCCCAA-ACATAGTCTTACA-TTGACACCTC-TATA-T-GT
1 GTCGATGCCATGT-CCAAGACATGGTCTTACACTAG-C-CCTCACATATTCGT
45081368 GTCGATGCCATGTCCAAGACATGGTCTTACACTA
1 GTCGATGCCATGTCCAAGACATGGTCTTACACTA
45081402 ACACATCTTG
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
47 4 0.06
48 26 0.38
49 4 0.06
50 28 0.41
51 6 0.09
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (50 bp):
GTCGATGCCATGTCCAAGACATGGTCTTACACTAGCCCTCACATATTCGT
Found at i:45081454 original size:46 final size:47
Alignment explanation
Indices: 45081226--45081535 Score: 185
Period size: 46 Copynumber: 6.6 Consensus size: 47
45081216 GTATAATACG
* * **
45081226 GATGCCATATCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT---C
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-TACATCTTGTGGCC
* *
45081273 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATTCGT-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT-ACATCTT-GTGGCC
* * * * * *
45081323 GATGCCATGTCCCAAACATAGTCTTACA-TTG-AC-ACCTCTATATGTGTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACATCT-TGTG-GCC
* **
45081371 GATGCCATGTCCAAGACATGGTCTTACACT--AAC-ACATCTTGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACATCTTGTGGCC
* * * * *
45081417 GATGTATATTCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTTGTGGCC
* * * **
45081463 GATACATGTCCCAAACATGTCTTACACTGGCTCT-TATAATGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTTGTGGCC
*
45081509 AATGCATGTCCCAGACATGTCTTACAC
1 GATGCATGTCCCAGACATGTCTTACAC
45081536 CGACACACAA
Statistics
Matches: 209, Mismatches: 41, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
44 10 0.05
45 10 0.05
46 81 0.39
47 41 0.20
48 37 0.18
49 3 0.01
50 27 0.13
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTTGTGGCC
Found at i:45088382 original size:18 final size:18
Alignment explanation
Indices: 45088356--45088394 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
45088346 AGGCATTAAC
* *
45088356 TCATTCATGAAAATTTCA
1 TCATCCATGAAAATATCA
45088374 TCATCCATGAAAATATCA
1 TCATCCATGAAAATATCA
45088392 TCA
1 TCA
45088395 ATTGCATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (18 bp):
TCATCCATGAAAATATCA
Found at i:45089061 original size:50 final size:47
Alignment explanation
Indices: 45088940--45089115 Score: 130
Period size: 47 Copynumber: 3.7 Consensus size: 47
45088930 GTATAATGCA
* *
45088940 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGTT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCAAGTC
* *
45088987 GATGCCATGT-CTAAGACATGGTCTTACACTAGCTC-TCACAT-ATTCGTACC
1 GATGCCATGTCCCAA-ACATGGTCTTACACTAGCTCATC-CATCA--AGT--C
* * * * * *
45089037 GATGCCATGTCCCAAACATAGTCTTACA-TTGACACCTCTAT-ATGTGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAG-CTCATCCATCA--AGTC
45089085 GATGCCATGT-CCAAGACATGGTCTTACACTA
1 GATGCCATGTCCCAA-ACATGGTCTTACACTA
45089116 ACACATCTTG
Statistics
Matches: 105, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
46 6 0.06
47 36 0.34
48 25 0.24
49 3 0.03
50 30 0.29
51 5 0.05
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (47 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCAAGTC
Found at i:45089112 original size:98 final size:97
Alignment explanation
Indices: 45088940--45089115 Score: 255
Period size: 97 Copynumber: 1.8 Consensus size: 97
45088930 GTATAATGCA
* * * *
45088940 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGTTGATGCCATGTCTAAGACA
1 GATGCCATGTCCCAAACATAGTCTTACACTGACACATCCATCAAGTTGATGCCATGTCCAAGACA
45089005 TGGTCTTACACTAGCTCTCACATATTCGTACC
66 TGGTCTTACACTAGCTCTCACATATTCGTACC
* * * *
45089037 GATGCCATGTCCCAAACATAGTCTTACATTGACACCTCTAT-ATGTGTCGATGCCATGTCCAAGA
1 GATGCCATGTCCCAAACATAGTCTTACACTGACACATCCATCAAGT-T-GATGCCATGTCCAAGA
45089101 CATGGTCTTACACTA
64 CATGGTCTTACACTA
45089116 ACACATCTTG
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
96 3 0.04
97 36 0.52
98 30 0.43
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (97 bp):
GATGCCATGTCCCAAACATAGTCTTACACTGACACATCCATCAAGTTGATGCCATGTCCAAGACA
TGGTCTTACACTAGCTCTCACATATTCGTACC
Found at i:45089168 original size:46 final size:46
Alignment explanation
Indices: 45089119--45089301 Score: 181
Period size: 46 Copynumber: 3.9 Consensus size: 46
45089109 TACACTAACA
* *
45089119 CATCTTGTGGCCGATGCATATTCCATACATGTCTTACACTGGCT-T
1 CATCTTGTGGCCGATGCATATCCCAGACATGTCTTACACTGGCTCT
* * * *
45089164 ACATCTCGAGGCCGATACATGTCCCAGACATGTCTTACACTGGCTCT
1 -CATCTTGTGGCCGATGCATATCCCAGACATGTCTTACACTGGCTCT
** * *
45089211 CATCTCAAT-GCCGATACCATATCCCAAACATAGTCTTACACTGGCTCT
1 CATCT-TGTGGCCGAT-GCATATCCCAGACAT-GTCTTACACTGGCTCT
** * * *
45089259 CATAATGTGGCCAATGCATGTCCCAGACATGTTTTACACTGGC
1 CATCTTGTGGCCGATGCATATCCCAGACATGTCTTACACTGGC
45089302 ACACAAATAA
Statistics
Matches: 111, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
46 61 0.55
47 26 0.23
48 24 0.22
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.29
Consensus pattern (46 bp):
CATCTTGTGGCCGATGCATATCCCAGACATGTCTTACACTGGCTCT
Found at i:45102215 original size:38 final size:38
Alignment explanation
Indices: 45102163--45102238 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
45102153 CCTATCATAC
45102163 GAGGATAACAAATATAAAATGACTAAATATAAATTTAT
1 GAGGATAACAAATATAAAATGACTAAATATAAATTTAT
*
45102201 GAGGATAACGAATATAAAATGACTAAATATAAATTTAT
1 GAGGATAACAAATATAAAATGACTAAATATAAATTTAT
45102239 TCCTTACTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.54, C:0.05, G:0.12, T:0.29
Consensus pattern (38 bp):
GAGGATAACAAATATAAAATGACTAAATATAAATTTAT
Found at i:45108832 original size:24 final size:24
Alignment explanation
Indices: 45108800--45108848 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
45108790 TATTAGATGT
45108800 ATGTCAAGTTTTTCACATACTTCC
1 ATGTCAAGTTTTTCACATACTTCC
45108824 ATGTCAAGTTTTTCACATACTTCC
1 ATGTCAAGTTTTTCACATACTTCC
45108848 A
1 A
45108849 AACTAATAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (24 bp):
ATGTCAAGTTTTTCACATACTTCC
Found at i:45114244 original size:67 final size:67
Alignment explanation
Indices: 45114133--45114268 Score: 240
Period size: 67 Copynumber: 2.0 Consensus size: 67
45114123 TAAATCTTAA
45114133 AAATTTAACATAATTATATATTTTTCACATCTAAAAGAAAGTGTTGTTAAAGAATTATAAAAGCA
1 AAATTTAACATAATTATATATTTTTCACATCTAAAAGAAAGTGTTGTTAAAGAATTATAAAAGCA
45114198 AC
66 AC
45114200 AAATTTAACAT-ATCTATATATTTTTCACATCTAAAA-AAATGTGTTGTTAAAGAATTATAAAAG
1 AAATTTAACATAAT-TATATATTTTTCACATCTAAAAGAAA-GTGTTGTTAAAGAATTATAAAAG
45114263 CAAC
64 CAAC
45114267 AA
1 AA
45114269 GGTCAAGGTC
Statistics
Matches: 67, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
66 5 0.07
67 62 0.93
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.35
Consensus pattern (67 bp):
AAATTTAACATAATTATATATTTTTCACATCTAAAAGAAAGTGTTGTTAAAGAATTATAAAAGCA
AC
Found at i:45114309 original size:4 final size:4
Alignment explanation
Indices: 45114293--45114326 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
45114283 AACTTGTGAA
*
45114293 AAAT AAAT GAAAT AAAT AAAT AAAT AAAT GAAT A
1 AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT A
45114327 CTGCCAATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:45115416 original size:18 final size:17
Alignment explanation
Indices: 45115390--45115434 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
45115380 GTCCTAGATA
*
45115390 TTATTTTTTTGTAAAATT
1 TTATATTTTT-TAAAATT
*
45115408 TTATATTTTTTATAATT
1 TTATATTTTTTAAAATT
45115425 TTATATTTTT
1 TTATATTTTT
45115435 ACGATTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 16 0.64
18 9 0.36
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (17 bp):
TTATATTTTTTAAAATT
Found at i:45115425 original size:10 final size:10
Alignment explanation
Indices: 45115406--45115484 Score: 53
Period size: 11 Copynumber: 8.3 Consensus size: 10
45115396 TTTTGTAAAA
45115406 TTTTAT-ATT
1 TTTTATAATT
45115415 TTTTATAA--
1 TTTTATAATT
45115423 TTTTAT-A-T
1 TTTTATAATT
**
45115431 TTTTACGATT
1 TTTTATAATT
45115441 TTTTATAAATT
1 TTTTAT-AATT
* *
45115452 TTTTACAA-C
1 TTTTATAATT
45115461 TTTTATAATT
1 TTTTATAATT
*
45115471 CTTTTATGATT
1 -TTTTATAATT
45115482 TTT
1 TTT
45115485 ATTTCTATAG
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
7 1 0.02
8 11 0.20
9 14 0.25
10 12 0.22
11 17 0.31
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.66
Consensus pattern (10 bp):
TTTTATAATT
Found at i:45115506 original size:24 final size:25
Alignment explanation
Indices: 45115479--45115536 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
45115469 TTCTTTTATG
*
45115479 ATTTTTATTTCTATAGT-TTTCTAT
1 ATTTTTATTTCTATAATATTTCTAT
* *
45115503 ATTTTTATTTTTATAATAATTTTTAT
1 ATTTTTATTTCTATAAT-ATTTCTAT
45115529 ATTTTTAT
1 ATTTTTAT
45115537 AATATTTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 15 0.52
26 14 0.48
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.69
Consensus pattern (25 bp):
ATTTTTATTTCTATAATATTTCTAT
Found at i:45115524 original size:18 final size:20
Alignment explanation
Indices: 45115504--45115540 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
45115494 GTTTTCTATA
45115504 TTTT-TATTTTTATAATAAT
1 TTTTATATTTTTATAATAAT
45115523 TTTTATATTTTTATAATA
1 TTTTATATTTTTATAATA
45115541 TTTATACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTATATTTTTATAATAAT
Found at i:45115534 original size:8 final size:8
Alignment explanation
Indices: 45115406--45115537 Score: 54
Period size: 9 Copynumber: 14.9 Consensus size: 8
45115396 TTTTGTAAAA
45115406 TTTTATATT
1 TTTTATA-T
*
45115415 TTTTATAA
1 TTTTATAT
45115423 TTTTATAT
1 TTTTATAT
*
45115431 TTTTACGATT
1 TTTTA-TA-T
45115441 TTTTATAAATT
1 TTTTAT--A-T
* *
45115452 TTTTACAAC
1 TTTTA-TAT
45115461 TTTTATAAT
1 TTTTAT-AT
45115470 TCTTT-TAT
1 T-TTTATAT
45115478 GATTTT-TAT
1 --TTTTATAT
*
45115487 TTCTATAGT
1 TTTTATA-T
45115496 TTTCTATAT
1 TTT-TATAT
45115505 TTTTAT-T
1 TTTTATAT
45115512 TTTATAATAAT
1 TTT-T-AT-AT
45115523 TTTTATAT
1 TTTTATAT
45115531 TTTTATA
1 TTTTATA
45115538 ATATTTATAC
Statistics
Matches: 97, Mismatches: 10, Indels: 33
0.69 0.07 0.24
Matches are distributed among these distances:
7 7 0.07
8 29 0.30
9 33 0.34
10 16 0.16
11 12 0.12
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (8 bp):
TTTTATAT
Found at i:45115536 original size:26 final size:24
Alignment explanation
Indices: 45115464--45115536 Score: 83
Period size: 26 Copynumber: 2.9 Consensus size: 24
45115454 TTACAACTTT
45115464 TATAATTCTTTTATGATTTTTATTTC
1 TATAATT-TTTTAT-ATTTTTATTTC
* * *
45115490 TATAGTTTTCTATATTTTTATTTT
1 TATAATTTTTTATATTTTTATTTC
45115514 TATAATAATTTTTATATTTTTAT
1 TATAAT--TTTTTATATTTTTAT
45115537 AATATTTATA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 15 0.38
25 5 0.12
26 20 0.50
ACGTcount: A:0.26, C:0.04, G:0.03, T:0.67
Consensus pattern (24 bp):
TATAATTTTTTATATTTTTATTTC
Found at i:45115604 original size:11 final size:11
Alignment explanation
Indices: 45115585--45115615 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
45115575 ATTTTTCTCT
*
45115585 ATTTTAAATAA
1 ATTTAAAATAA
45115596 ATTTAAAATAA
1 ATTTAAAATAA
45115607 ATTTAAAAT
1 ATTTAAAAT
45115616 TTTTTAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
ATTTAAAATAA
Found at i:45115630 original size:19 final size:20
Alignment explanation
Indices: 45115602--45115639 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
45115592 ATAAATTTAA
45115602 AATAAATTTAA-AATTTTTT
1 AATAAATTTAATAATTTTTT
*
45115621 AATAATTTTAATAATTTTT
1 AATAAATTTAATAATTTTT
45115640 ATTGATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
AATAAATTTAATAATTTTTT
Found at i:45121464 original size:40 final size:40
Alignment explanation
Indices: 45121419--45121548 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
45121409 CGGAATACAA
45121419 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
45121459 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
45121499 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
45121539 CCGGATATAA
1 CCGGATATAA
45121549 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:45124049 original size:46 final size:44
Alignment explanation
Indices: 45123982--45124100 Score: 150
Period size: 46 Copynumber: 2.6 Consensus size: 44
45123972 AATGTGTGCT
**
45123982 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-TTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCAT---CCACATTGACGAGAGCC
* *
45124028 AGTGTAAGACATGTCTGGGACATGCATCCGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCCACATT--GACGAGAGCC
45124074 AGTGTAAGACATGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
45124101 TAGCCTCGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
43 6 0.09
46 60 0.91
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCCACATTGACGAGAGCC
Found at i:45124234 original size:49 final size:48
Alignment explanation
Indices: 45123982--45124290 Score: 208
Period size: 49 Copynumber: 6.6 Consensus size: 48
45123972 AATGTGTGCT
* * ** **
45123982 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCACAT-TTTGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTGATAGATGAGAGCC
* * * * *
45124028 AGTGTAAGACATGTCTGGGACAT-GCATCCGCAT--TGAGACGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTGAT-AGATGAGAGCC
* * * * * *
45124074 AGTGTAAGACATGTCTGGGACAT-GCATTAGCCTCGAGATAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCT-GATAGATGA-GAGCC
* * * * *
45124122 AGTGTAAGACCTGTCTGGGACATGGCGTCAG-CT--T-GTTGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTGATAGATGAGAGCC
* * * *
45124166 AATGTAAGACCTATTTGGGACATGGCATCAACACTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGC-CTGATAGATGAGAGCC
*** * * *
45124215 AGTGTAAGACCTGTCTGGGACACATCATCAGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCT-GATAGATGAGAGCC
45124264 AGTGTAAGACCTGTCTGGGACATGGCA
1 AGTGTAAGACCTGTCTGGGACATGGCA
45124291 CCGACTTTGA
Statistics
Matches: 202, Mismatches: 47, Indels: 25
0.74 0.17 0.09
Matches are distributed among these distances:
44 29 0.14
46 68 0.34
47 1 0.00
48 33 0.16
49 71 0.35
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTGATAGATGAGAGCC
Found at i:45127488 original size:40 final size:39
Alignment explanation
Indices: 45127444--45127569 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
45127434 GGGACTCAAC
*
45127444 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
45127484 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
45127524 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
45127564 CCGGAT
1 CCGGAT
45127570 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:45127528 original size:80 final size:80
Alignment explanation
Indices: 45127383--45127569 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
45127373 GCTACACATT
* * *
45127383 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
45127447 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
45127463 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
45127526 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
45127544 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
45127570 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:45135575 original size:40 final size:40
Alignment explanation
Indices: 45135446--45135618 Score: 129
Period size: 40 Copynumber: 4.3 Consensus size: 40
45135436 GCTACACATT
* *
45135446 CAAATGCCTTCGGGA-CATAGCCCGG-TTACAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
* * * * * *
45135486 CGAATGCCTTCGGGA-CTCAACCCGGATTTAGTAGCTTTGCT
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAAC-TCGCA
* *
45135527 CGAA-GCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
45135566 CAAATGCCTTCGGGTCTTTGCCCGGATATAATCACTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
45135606 TAAATGCCTTCGG
1 CAAATGCCTTCGG
45135619 GGCTGTAACA
Statistics
Matches: 106, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
39 9 0.08
40 88 0.83
41 9 0.08
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:45137118 original size:40 final size:39
Alignment explanation
Indices: 45137074--45137199 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
45137064 GGGACTCAAC
*
45137074 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
45137114 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
45137154 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
45137194 CCGGAT
1 CCGGAT
45137200 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:45137158 original size:80 final size:80
Alignment explanation
Indices: 45137013--45137199 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
45137003 GCTACACATT
* * *
45137013 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
45137077 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
45137093 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
45137156 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
45137174 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
45137200 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:45145187 original size:40 final size:39
Alignment explanation
Indices: 45145143--45145268 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
45145133 GGGACTCAAC
*
45145143 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
45145183 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
45145223 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
45145263 CCGGAT
1 CCGGAT
45145269 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:45145227 original size:80 final size:80
Alignment explanation
Indices: 45145082--45145268 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
45145072 GCTACACATT
* * *
45145082 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
45145146 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
45145162 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
45145225 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
45145243 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
45145269 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:45147243 original size:21 final size:21
Alignment explanation
Indices: 45147217--45147256 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
45147207 CTAGCCACAT
45147217 GCCCGTGTGCCATGCCCGTAC
1 GCCCGTGTGCCATGCCCGTAC
* *
45147238 GCCCGTGTGTCATGGCCGT
1 GCCCGTGTGCCATGCCCGT
45147257 GTCGACATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.38, G:0.33, T:0.23
Consensus pattern (21 bp):
GCCCGTGTGCCATGCCCGTAC
Found at i:45148432 original size:15 final size:14
Alignment explanation
Indices: 45148405--45148436 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
45148395 GTTTTTAGCT
45148405 TAATTTTTCTTTTC
1 TAATTTTTCTTTTC
45148419 TAATTTTTCTTTT-
1 TAATTTTTCTTTTC
45148432 TAATT
1 TAATT
45148437 GCTTCTAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (14 bp):
TAATTTTTCTTTTC
Found at i:45153464 original size:3 final size:3
Alignment explanation
Indices: 45153456--45153497 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
45153446 CTTTGAGTCC
45153456 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
45153498 TTAATTTTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:45156577 original size:19 final size:19
Alignment explanation
Indices: 45156553--45156604 Score: 79
Period size: 19 Copynumber: 2.7 Consensus size: 19
45156543 CGGCCTGAGG
*
45156553 ACACGGGTGTG-CCAAAGGC
1 ACACGGGCGTGTCC-AAGGC
45156572 ACACGGGCGTGTCCAAGGC
1 ACACGGGCGTGTCCAAGGC
45156591 ACACGGGCGTGTCC
1 ACACGGGCGTGTCC
45156605 CTATGTCCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 29 0.94
20 2 0.06
ACGTcount: A:0.21, C:0.31, G:0.37, T:0.12
Consensus pattern (19 bp):
ACACGGGCGTGTCCAAGGC
Found at i:45165027 original size:3 final size:3
Alignment explanation
Indices: 45165013--45165054 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
45165003 AATAAAACAT
*
45165013 TTA TTA TAA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
45165055 AGTTAATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:45171693 original size:26 final size:26
Alignment explanation
Indices: 45171650--45171725 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 26
45171640 TCTCATCCTT
* * *
45171650 ATTTTACCCTTAGCAAAATTTTGATG
1 ATTTTACCCCTAGTAAAATTTTGACG
45171676 ATTTTACCCCTAGTAAAATTTTGACG
1 ATTTTACCCCTAGTAAAATTTTGACG
*
45171702 ATTTTTCCCCTAGTAAAATTTTGA
1 ATTTTACCCCTAGTAAAATTTTGA
45171726 GAAAATATGT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGACG
Found at i:45178506 original size:39 final size:39
Alignment explanation
Indices: 45178452--45178575 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
45178442 ATTTGATGTG
45178452 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
45178491 TATCCGGACTTAGGGTCCGTAGGCTATGTGCTTGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * *
45178530 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
45178569 TGTCCGG
1 TATCCGG
45178576 GCTAAAGTCC
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:45178589 original size:39 final size:39
Alignment explanation
Indices: 45178452--45178593 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
45178442 ATTTGATGTG
*
45178452 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
45178491 TATCCGGACTTAGGGTCCGTAGGCTATGTGCTTGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
45178530 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
45178569 TGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATCCGGACTTAAGGT-CCGCAGGCT
45178594 TCGAGCAGGT
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 5 0.05
39 87 0.95
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:45178608 original size:78 final size:78
Alignment explanation
Indices: 45178452--45178609 Score: 176
Period size: 78 Copynumber: 2.0 Consensus size: 78
45178442 ATTTGATGTG
* * * ** *
45178452 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGTAGGCTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTA
* **
45178517 TGTGCTTGAATTA
66 TGAGCAGGAATTA
* *
45178530 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGGCT
*
45178594 -TCGAGCAGGTATTA
65 AT-GAGCAGGAATTA
45178608 TA
1 TA
45178610 CTGGGTTTAA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
77 5 0.08
78 61 0.92
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (78 bp):
TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTA
TGAGCAGGAATTA
Found at i:45183574 original size:19 final size:19
Alignment explanation
Indices: 45183547--45183585 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
45183537 TGTTTAGAAG
45183547 CTTAATTCTTCAAGCAATT
1 CTTAATTCTTCAAGCAATT
*
45183566 CTTAGTTCTTCAAGCAATT
1 CTTAATTCTTCAAGCAATT
45183585 C
1 C
45183586 GCTAAAGGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (19 bp):
CTTAATTCTTCAAGCAATT
Found at i:45185394 original size:39 final size:39
Alignment explanation
Indices: 45185340--45185463 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
45185330 ATTTGATCTG
45185340 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
45185379 TATCCGGACTTAGGGTCCGCAGGCTATGTGTTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
45185418 TATCCGAACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
45185457 TGTCCGG
1 TATCCGG
45185464 GCTAAAGTCC
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:45185477 original size:39 final size:39
Alignment explanation
Indices: 45185340--45185501 Score: 184
Period size: 39 Copynumber: 4.2 Consensus size: 39
45185330 ATTTGATCTG
* *
45185340 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* * *
45185379 TATCCGGACTTAGGGTCCGCAGGCTATGTGTTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* *
45185418 TATCCGAACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* * * * * *
45185457 TGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGGTATTA
1 TATCCGGACTTAAGGT-CCGCAGGCTACGTGCTGGAATTA
45185496 TA-CCGG
1 TATCCGG
45185502 GTTTAAATTC
Statistics
Matches: 107, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
38 9 0.08
39 98 0.92
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
Found at i:45186667 original size:24 final size:23
Alignment explanation
Indices: 45186606--45186676 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 23
45186596 GGACTCACTC
45186606 AGCTCGTATGAGCTTACTGATATATT
1 AGCTCGTA-GAGCTTACTG-T-TATT
*
45186632 AGCTCGTAAGAGCTTACTGTTCTT
1 AGCTCGT-AGAGCTTACTGTTATT
* *
45186656 TGCTCGTCAGAGCTTAATGTT
1 AGCTCGT-AGAGCTTACTGTT
45186677 TCAGCTCAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
24 21 0.52
25 1 0.03
26 17 0.43
27 1 0.03
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (23 bp):
AGCTCGTAGAGCTTACTGTTATT
Found at i:45190515 original size:13 final size:13
Alignment explanation
Indices: 45190497--45190529 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
45190487 TCGTGTGAGA
45190497 CACACGGCCTGCC
1 CACACGGCCTGCC
*
45190510 CACACGGCCTGCG
1 CACACGGCCTGCC
45190523 CACACGG
1 CACACGG
45190530 GCGTGTGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.48, G:0.27, T:0.06
Consensus pattern (13 bp):
CACACGGCCTGCC
Found at i:45193209 original size:15 final size:15
Alignment explanation
Indices: 45193188--45193230 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
45193178 GCTTGAACTT
45193188 ACCTTTTCATCGATA
1 ACCTTTTCATCGATA
* *
45193203 GCCTTTTCATTGATA
1 ACCTTTTCATCGATA
*
45193218 ACCTTTTCGTCGA
1 ACCTTTTCATCGA
45193231 AAATGTAACA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.21, C:0.26, G:0.12, T:0.42
Consensus pattern (15 bp):
ACCTTTTCATCGATA
Found at i:45197857 original size:31 final size:32
Alignment explanation
Indices: 45197814--45197880 Score: 118
Period size: 31 Copynumber: 2.1 Consensus size: 32
45197804 CAAACTTACA
*
45197814 TGAGAAAAGAAAACCATCATATAATTTGAGCT
1 TGAGAAAAGAAAACCATCATACAATTTGAGCT
45197846 TGAG-AAAGAAAACCATCATACAATTTGAGCT
1 TGAGAAAAGAAAACCATCATACAATTTGAGCT
45197877 TGAG
1 TGAG
45197881 CTTCCACTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 30 0.88
32 4 0.12
ACGTcount: A:0.45, C:0.13, G:0.18, T:0.24
Consensus pattern (32 bp):
TGAGAAAAGAAAACCATCATACAATTTGAGCT
Found at i:45204053 original size:15 final size:15
Alignment explanation
Indices: 45204033--45204073 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
45204023 AACTCAAATT
45204033 ACCTTTTCATCGATA
1 ACCTTTTCATCGATA
*
45204048 ACCTTTTCATAGATA
1 ACCTTTTCATCGATA
45204063 ACCTTTTCATC
1 ACCTTTTCATC
45204074 CTTTCCATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.05, T:0.41
Consensus pattern (15 bp):
ACCTTTTCATCGATA
Found at i:45207400 original size:25 final size:25
Alignment explanation
Indices: 45207372--45207429 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
45207362 TAGCTCGTGT
*
45207372 GAGCATACCAATTTATAGCTTATGG
1 GAGCATACCAATTTACAGCTTATGG
* * *
45207397 GAGCATACCGATTTACAGCTTGTGT
1 GAGCATACCAATTTACAGCTTATGG
45207422 GAGCATAC
1 GAGCATAC
45207430 ATGTACAGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (25 bp):
GAGCATACCAATTTACAGCTTATGG
Found at i:45210728 original size:17 final size:19
Alignment explanation
Indices: 45210686--45210729 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
45210676 ATAAAATTTT
*
45210686 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
45210705 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
45210723 AA-TATTA
1 AATTATTA
45210730 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:45212554 original size:28 final size:28
Alignment explanation
Indices: 45212522--45212590 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
45212512 GCGTAGATCA
45212522 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
45212550 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
45212578 CGATA-TACCCCTA
1 CGAAATTACCCCTA
45212591 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:45228408 original size:40 final size:40
Alignment explanation
Indices: 45228338--45228545 Score: 224
Period size: 40 Copynumber: 5.2 Consensus size: 40
45228328 CGGGATTTAA
** * *
45228338 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
45228377 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
45228417 CCGGATATAGTCGA-TAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
45228457 CCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
45228497 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
45228538 CCGGATAT
1 CCGGATAT
45228546 CATTCGAATA
Statistics
Matches: 138, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.12
40 93 0.67
41 29 0.21
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:45236527 original size:40 final size:40
Alignment explanation
Indices: 45236424--45236624 Score: 242
Period size: 39 Copynumber: 5.2 Consensus size: 40
45236414 TCGGATTTAA
*
45236424 CCGGATATAG-CACT--CGCAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
*
45236460 CCGGATGATA-T-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGAT-ATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
* *
45236499 CCGGATATAGTCGCTAGCACAAATGCCTTCGGG-TTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
* * *
45236538 CCGGATATAGTAACTCGCA-AAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGA-CTTAGC
45236577 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAGC
45236617 CCGGATAT
1 CCGGATAT
45236625 CATTCGAATA
Statistics
Matches: 140, Mismatches: 13, Indels: 20
0.81 0.08 0.12
Matches are distributed among these distances:
36 9 0.06
37 5 0.04
38 17 0.12
39 61 0.44
40 42 0.30
41 6 0.04
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:45238012 original size:41 final size:40
Alignment explanation
Indices: 45237856--45238021 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
45237846 TCCTCCTAAT
*
45237856 CCGGATAT-GATCACTAGCATAAATG-CTTCGGGACTTAG-
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGACTTAGC
* ** *
45237894 CCGGATATAGTCGCTAGC-CAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
* * * *
45237933 CCGGATATAGTAACTCGCATAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGA-CTTAGC
* *
45237973 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAGC
45238014 CCGGATAT
1 CCGGATAT
45238022 CATTCGAATA
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
37 5 0.05
38 25 0.25
39 18 0.18
40 26 0.25
41 25 0.25
42 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:45238017 original size:81 final size:77
Alignment explanation
Indices: 45237872--45238021 Score: 194
Period size: 81 Copynumber: 1.9 Consensus size: 77
45237862 ATGATCACTA
* * * ** *
45237872 GCATAAATGCTTCGGGACTTAGCCGGATATAGTCGCTAGCCAAATGCCTTCGGGTTTTGGCCCGG
1 GCATAAATGCTTCGGGACTTAGCCGGATATAGTCACTAACCAAAAGCCTTCGGGACTTAGCCCGG
45237937 ATATAGTAACTC
66 ATATAGTAACTC
45237949 GCATAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAG
1 GCATAAATG-CTTCGGGA-CTTAG-CCGGATATAGTCAC-TAAC-CAAAAGCCTTCGGGACTTAG
45238013 CCCGGATAT
61 CCCGGATAT
45238022 CATTCGAATA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
77 12 0.19
78 9 0.15
79 13 0.21
80 3 0.05
81 25 0.40
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (77 bp):
GCATAAATGCTTCGGGACTTAGCCGGATATAGTCACTAACCAAAAGCCTTCGGGACTTAGCCCGG
ATATAGTAACTC
Found at i:45245952 original size:40 final size:40
Alignment explanation
Indices: 45245882--45246089 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
45245872 CGGGATTTAA
** * *
45245882 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
45245921 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
45245961 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
45246001 CCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
45246041 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
45246082 CCGGATAT
1 CCGGATAT
45246090 CATTCGAATA
Statistics
Matches: 138, Mismatches: 27, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
39 15 0.11
40 95 0.69
41 28 0.20
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:45262696 original size:70 final size:70
Alignment explanation
Indices: 45262584--45262816 Score: 238
Period size: 70 Copynumber: 3.3 Consensus size: 70
45262574 AGCGTTAACT
* *
45262584 GGTAAAATCGAC-AATGA-GTGTGCCTAGCATTGGTCGGTATAACCGAAAATAAATGCGCCCTGC
1 GGTAAAA-CGACAAAT-ATGTGTGCTTAGCACTGGTCGGTATAACCGAAAATAAATGCGCCCTGC
*
45262647 TCTGGTC
64 GCTGGTC
** * * *
45262654 GGTAGAGCCGACAAATATGTGTGCTTAGCACT-GTCGGCATAACCAAAAATAAATGCGCCCTACG
1 GGTA-AAACGACAAATATGTGTGCTTAGCACTGGTCGGTATAACCGAAAATAAATGCGCCCTGCG
45262718 CTGGTC
65 CTGGTC
* ** * * * * ** *
45262724 GATAAAATAAAAAATATGTGTGCTCAACACTGGTCAGTATAATTGACAATAAATGCGCCCTGCGC
1 GGTAAAACGACAAATATGTGTGCTTAGCACTGGTCGGTATAACCGAAAATAAATGCGCCCTGCGC
45262789 TGGTC
66 TGGTC
*
45262794 GGTAAAATCGACAAATAAGTGTG
1 GGTAAAA-CGACAAATATGTGTG
45262817 AAATCATTTC
Statistics
Matches: 130, Mismatches: 28, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
69 20 0.15
70 83 0.64
71 27 0.21
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (70 bp):
GGTAAAACGACAAATATGTGTGCTTAGCACTGGTCGGTATAACCGAAAATAAATGCGCCCTGCGC
TGGTC
Found at i:45263435 original size:17 final size:17
Alignment explanation
Indices: 45263413--45263446 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
45263403 ATAAAGTTTA
45263413 TTTTCATTTTCATTTTT
1 TTTTCATTTTCATTTTT
*
45263430 TTTTCATTTTCCTTTTT
1 TTTTCATTTTCATTTTT
45263447 AATTGGTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTCATTTTCATTTTT
Found at i:45265212 original size:22 final size:22
Alignment explanation
Indices: 45265187--45265282 Score: 120
Period size: 22 Copynumber: 4.4 Consensus size: 22
45265177 CACTAAGTTA
45265187 ACAGGACGGCTCAACGCCGTAG
1 ACAGGACGGCTCAACGCCGTAG
* *
45265209 ACAGGACTGCTCAACGCCATAG
1 ACAGGACGGCTCAACGCCGTAG
* * *
45265231 ACAGGACGACTTAACGCTGTAG
1 ACAGGACGGCTCAACGCCGTAG
* * *
45265253 ACAGAATGGCTCAACACCGTAG
1 ACAGGACGGCTCAACGCCGTAG
45265275 ACAGGACG
1 ACAGGACG
45265283 ACTGAAGGTC
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 59 1.00
ACGTcount: A:0.32, C:0.28, G:0.27, T:0.12
Consensus pattern (22 bp):
ACAGGACGGCTCAACGCCGTAG
Found at i:45279115 original size:43 final size:43
Alignment explanation
Indices: 45279054--45279155 Score: 118
Period size: 43 Copynumber: 2.4 Consensus size: 43
45279044 AATTCCAACG
* *
45279054 TCCCAGAC-GTGGTCTTACATGTAA-TTCAGTATCGAAGCCTCTA
1 TCCCAGACAG-GGTCTTACATGAAATTTCA-AATCGAAGCCTCTA
* * *
45279097 TCCCAGACAGGGTCTTACATGAAATTTCAAATCGAGGCCTGTG
1 TCCCAGACAGGGTCTTACATGAAATTTCAAATCGAAGCCTCTA
*
45279140 TCCCAGACACGGTCTT
1 TCCCAGACAGGGTCTT
45279156 GCACAATATC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
43 46 0.90
44 5 0.10
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (43 bp):
TCCCAGACAGGGTCTTACATGAAATTTCAAATCGAAGCCTCTA
Found at i:45284836 original size:40 final size:41
Alignment explanation
Indices: 45284745--45284854 Score: 138
Period size: 40 Copynumber: 2.7 Consensus size: 41
45284735 ATAACCACGT
* *
45284745 GCACGAATGCCTTCGGGTCTTAGCCCAGA-TAGAACGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
*
45284785 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-CCG-CTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTA
*
45284825 GCAC-AATTGCCTTCGGGTCTTAACCCGGAT
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT
45284855 ATAATTTCCA
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
39 2 0.03
40 56 0.89
41 2 0.03
42 3 0.05
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (41 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
Found at i:45288348 original size:49 final size:49
Alignment explanation
Indices: 45288293--45288564 Score: 457
Period size: 49 Copynumber: 5.7 Consensus size: 49
45288283 GATTTTACGC
*
45288293 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
45288342 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCGATGT
1 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
45288389 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
45288438 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
45288487 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
45288534 GATGAATGTGAAA--GTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTGTATATATGTGATAAG
45288565 TCCCGAAGGG
Statistics
Matches: 214, Mismatches: 6, Indels: 8
0.94 0.03 0.04
Matches are distributed among these distances:
47 101 0.47
48 11 0.05
49 102 0.48
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:45288400 original size:96 final size:96
Alignment explanation
Indices: 45288293--45288564 Score: 458
Period size: 96 Copynumber: 2.8 Consensus size: 96
45288283 GATTTTACGC
*
45288293 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
45288358 TATATATGTGATAAGGCCGAATGGCCGATGT
66 TATATATGTGATAAGGCCGAATGGCCGATGT
45288389 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
*
45288454 TGTATATATGTGATAAGGCCTAATGGCCGATGT
64 TGTATATATGTGATAAGGCCGAATGGCCGATGT
* * *
45288487 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
*
45288550 TATAAATGTGATAAG
66 TATATATGTGATAAG
45288565 TCCCGAAGGG
Statistics
Matches: 168, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
94 17 0.10
95 2 0.01
96 100 0.60
97 6 0.04
98 43 0.26
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (96 bp):
GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
TATATATGTGATAAGGCCGAATGGCCGATGT
Found at i:45288475 original size:145 final size:143
Alignment explanation
Indices: 45288293--45288564 Score: 499
Period size: 145 Copynumber: 1.9 Consensus size: 143
45288283 GATTTTACGC
45288293 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
* *
45288358 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
66 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTGTATAAATGTGATAAGG
45288423 CCTAATGGCCGATGT
129 CCTAATGGCCGATGT
*
45288438 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
45288503 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
66 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
45288565 TCCCGAAGGG
Statistics
Matches: 124, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
143 17 0.14
145 107 0.86
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (143 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCC
TAATGGCCGATGT
Found at i:45289226 original size:2 final size:2
Alignment explanation
Indices: 45289219--45289250 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
45289209 TATTCGAAGG
45289219 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45289251 AGACAGCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45298873 original size:15 final size:15
Alignment explanation
Indices: 45298803--45298894 Score: 87
Period size: 15 Copynumber: 6.0 Consensus size: 15
45298793 ATATTATTTG
45298803 AATAACCTTTTCAATC
1 AATAACCTTTTC-ATC
*
45298819 CATAACCTTTTCAATC
1 AATAACCTTTTC-ATC
* * *
45298835 GATAATCTTCTT-TTC
1 AATAACCTT-TTCATC
*
45298850 AACAACCTTTTCATC
1 AATAACCTTTTCATC
* *
45298865 GATAACCTTTTCATA
1 AATAACCTTTTCATC
45298880 AATAACCTTTTCATC
1 AATAACCTTTTCATC
45298895 CTTTTCATTG
Statistics
Matches: 61, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
14 2 0.03
15 35 0.57
16 22 0.36
17 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.02, T:0.40
Consensus pattern (15 bp):
AATAACCTTTTCATC
Found at i:45298887 original size:30 final size:30
Alignment explanation
Indices: 45298804--45298894 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 30
45298794 TATTATTTGA
*
45298804 ATAACCTTTTCAATCCATAACCTTTTCAATCG
1 ATAACCTTTTC-ATCAATAACCTTTTC-ATCG
* * *
45298836 ATAATCTTCTT-TTCAACAACCTTTTCATCG
1 ATAACCTT-TTCATCAATAACCTTTTCATCG
*
45298866 ATAACCTTTTCATAAATAACCTTTTCATC
1 ATAACCTTTTCATCAATAACCTTTTCATC
45298895 CTTTTCATTG
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
29 2 0.04
30 26 0.53
31 12 0.24
32 7 0.14
33 2 0.04
ACGTcount: A:0.31, C:0.26, G:0.02, T:0.41
Consensus pattern (30 bp):
ATAACCTTTTCATCAATAACCTTTTCATCG
Found at i:45300080 original size:20 final size:20
Alignment explanation
Indices: 45300055--45300095 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
45300045 ATTAGAATCG
45300055 TGGTCTCGGAATAACTATTT
1 TGGTCTCGGAATAACTATTT
45300075 TGGTCTCGGAATAACTATTT
1 TGGTCTCGGAATAACTATTT
45300095 T
1 T
45300096 TGACGACACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (20 bp):
TGGTCTCGGAATAACTATTT
Found at i:45301940 original size:38 final size:39
Alignment explanation
Indices: 45301869--45301944 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 39
45301859 GCTATGTTAC
45301869 ACGGATGAATTACAGTTATATGAATCAAGTACTGTTTAA
1 ACGGATGAATTACAGTTATATGAATCAAGTACTGTTTAA
* * * * *
45301908 ACGGGTGAGTTACTGTTAT-TGAATGAATTACTGTTTA
1 ACGGATGAATTACAGTTATATGAATCAAGTACTGTTTA
45301945 TATGATTGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
38 16 0.50
39 16 0.50
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (39 bp):
ACGGATGAATTACAGTTATATGAATCAAGTACTGTTTAA
Found at i:45313208 original size:47 final size:46
Alignment explanation
Indices: 45313102--45313244 Score: 182
Period size: 47 Copynumber: 3.1 Consensus size: 46
45313092 TGCACACTTT
* *
45313102 TCACAATTGGTCATTCGGCCTTATCACATAT-TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATATCACTTTCACAT-TCA
**
45313148 TCACATTAACCATTCGGCCTTATCACATATATGCACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATAT-CACTTTCACATTCA
* *
45313195 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCAGATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATA-TCACTTTCACATTCA
45313242 TCA
1 TCA
45313245 TGTGACAACC
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
45 23 0.27
46 6 0.07
47 56 0.66
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATATCACTTTCACATTCA
Found at i:45314607 original size:41 final size:41
Alignment explanation
Indices: 45314562--45314679 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
45314552 TGAAAGATAA
45314562 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
45314603 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
45314633 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
45314674 ATGTAG
1 ATGTAG
45314680 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:45314618 original size:71 final size:71
Alignment explanation
Indices: 45314530--45314693 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
45314520 GAGATGTATC
45314530 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
45314595 AGGACA
66 AGGACA
45314601 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
45314666 AGGACA
66 AGGACA
45314672 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
45314694 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:45322134 original size:41 final size:41
Alignment explanation
Indices: 45322089--45322206 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
45322079 TGAAAGATAA
45322089 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
45322130 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
45322160 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
45322201 ATGTAG
1 ATGTAG
45322207 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:45322145 original size:71 final size:71
Alignment explanation
Indices: 45322057--45322220 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
45322047 GAGATGTATC
45322057 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
45322122 AGGACA
66 AGGACA
45322128 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
45322193 AGGACA
66 AGGACA
45322199 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
45322221 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:45327218 original size:91 final size:91
Alignment explanation
Indices: 45327077--45327243 Score: 216
Period size: 91 Copynumber: 1.8 Consensus size: 91
45327067 TTTGTGCGCT
* *
45327077 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGTAACGTAAGCTAGTGTAAGA-TATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGTAAC-TAAGCCAGTGTAAGACCATGTCTGG
45327141 GACAT-GCATCGGCTACGAGATGTGTC
65 GACATGGCATCGGCTACGAGATGTGTC
* * *
45327167 AGTGTAAGACCATGTCTGGGACATGGCATTGA-CTTGATAGA-TGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCG-TA-ACTAAGCCAGTGTAAGACCATGTC
45327230 TGGGACATGGCATC
62 TGGGACATGGCATC
45327244 AGCATTATAC
Statistics
Matches: 66, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
90 9 0.14
91 30 0.45
92 21 0.32
93 6 0.09
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (91 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCGTAACTAAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGGCTACGAGATGTGTC
Found at i:45340627 original size:79 final size:81
Alignment explanation
Indices: 45340486--45340667 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
45340476 ACTCGTTCAG
* * *
45340486 ATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 ATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
* *
45340550 TTAGTAAC-TCGCACCA
66 ATAGTAACTTAGCA-CA
**
45340566 ATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-AGATCTTAGTCCGGA
1 ATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGGA
* *
45340628 TATGGTCACTTAGCACA
65 TATAGTAACTTAGCACA
*
45340645 AAGCCTTCGGGACTTAGCCCGGA
1 ATGCCTTCGGGACTTAGCCCGGA
45340668 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 2 0.02
79 59 0.67
80 27 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
ATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
ATAGTAACTTAGCACA
Found at i:45340667 original size:40 final size:40
Alignment explanation
Indices: 45340464--45340667 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
45340454 CGGAGTTTAA
** * *
45340464 CCGGATATAGCT-ACTCGTTCAGATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45340504 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45340544 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45340583 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-AGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
45340623 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
45340663 CCGGA
1 CCGGA
45340668 CATCATTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 93 0.67
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:45348579 original size:40 final size:40
Alignment explanation
Indices: 45348530--45348708 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
45348520 CTACTCGTTC
*
45348530 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
* * *
45348570 AATGCCTTCGGGACTTAACCCGATT-TAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
*
45348609 AATGCCTTCGGG-CTTAG-CCGG-AATTAGTAACT-GCACA
1 AATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACA
* * * * *
45348646 AATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACA
45348687 AA-GCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
45348709 ACATCATTCG
Statistics
Matches: 118, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
36 2 0.02
37 16 0.14
38 17 0.14
39 34 0.29
40 39 0.33
41 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
Found at i:45348696 original size:77 final size:78
Alignment explanation
Indices: 45348533--45348705 Score: 185
Period size: 77 Copynumber: 2.2 Consensus size: 78
45348523 CTCGTTCAAT
* * *
45348533 GCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGATTTA
1 GCCTTCGGGACTTAG-CCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGATATA
* *
45348597 GTAACTCGCACCAAT
64 GTAACTAGCACCAAA
* * *
45348612 GCCTTCGGG-CTTAGCCGGAATTAGTAACT-GCACAAATGCCTTC-GGATCTTAGTCCGGATATG
1 GCCTTCGGGACTTAGCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACCCGATATA
*
45348674 GTCACTTAGCA-CAAA
64 GTAAC-TAGCACCAAA
45348689 GCCTTCGGGACTTAGCC
1 GCCTTCGGGACTTAGCC
45348706 CGGACATCAT
Statistics
Matches: 80, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
75 3 0.04
76 18 0.22
77 34 0.43
78 16 0.20
79 9 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (78 bp):
GCCTTCGGGACTTAGCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGATATAGT
AACTAGCACCAAA
Found at i:45348709 original size:40 final size:40
Alignment explanation
Indices: 45348530--45348709 Score: 203
Period size: 39 Copynumber: 4.6 Consensus size: 40
45348520 CTACTCGTTC
* *
45348530 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
45348570 AATGCCTTCGGGACTTAACCC-GATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
45348609 AATGCCTTCGGG-CTTAG-CCGGA-ATTAGTAACT-GCACA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
* * * *
45348646 AATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACA
45348687 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
45348710 CATCATTCGA
Statistics
Matches: 120, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
36 2 0.02
37 15 0.12
38 19 0.16
39 37 0.31
40 37 0.31
41 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:45352173 original size:95 final size:95
Alignment explanation
Indices: 45352010--45352300 Score: 386
Period size: 95 Copynumber: 3.1 Consensus size: 95
45352000 TTTATCTATT
* * * * **
45352010 ATGAACAACTTTATTTGAGTTAGTTGATTTAATATCGCTACTCCAAACGGCTCACTGATTTAAGA
1 ATGAACAATTTTATTTGAGTTAGCTGATTTAATATCACTGCTCCAAACGGCTCGTTGATTTAAGA
* *
45352075 TTGCAACCTAAGTTCATTTGATTTAATATC
66 TTGCAACCTAAGTTCATTCGATTTAACATC
* * * *
45352105 ATGAACAATTTTATCTAAGTTAGCTGATTTAATATTACTGCTCCAAATGGCTCGTTGATTTAAGA
1 ATGAACAATTTTATTTGAGTTAGCTGATTTAATATCACTGCTCCAAACGGCTCGTTGATTTAAGA
** *
45352170 TTGCAATTTGAGTTCATTCGATTTAACATC
66 TTGCAACCTAAGTTCATTCGATTTAACATC
* * *
45352200 ATAAACAATTTTATTTGAGTTAGCTGATTTAATATCA-TAGCTCCAAACAGCTCGTTGATTTAAT
1 ATGAACAATTTTATTTGAGTTAGCTGATTTAATATCACT-GCTCCAAACGGCTCGTTGATTTAAG
* *
45352264 ATTGTAGCCTAAGTTCATTCGATTTAACATC
65 ATTGCAACCTAAGTTCATTCGATTTAACATC
45352295 ATGAAC
1 ATGAAC
45352301 TTAGGTGATT
Statistics
Matches: 167, Mismatches: 28, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
94 1 0.01
95 166 0.99
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (95 bp):
ATGAACAATTTTATTTGAGTTAGCTGATTTAATATCACTGCTCCAAACGGCTCGTTGATTTAAGA
TTGCAACCTAAGTTCATTCGATTTAACATC
Found at i:45352486 original size:96 final size:95
Alignment explanation
Indices: 45352322--45352613 Score: 282
Period size: 95 Copynumber: 3.1 Consensus size: 95
45352312 AATATTGATG
** * * **
45352322 ATTTAAGATCATAGCTTAAATTCATTCAATTTAACACCATAAACAATTTTATTTGAGTTAGCTGA
1 ATTTAAGATCGCAGCTTAAGTTCATTCAATTTAACATCATAAACAATTTTATTTGAGTTAGCCAA
* **
45352387 TTTAATATCACTGCTCCAAATTAGCTTGCTA
66 TTTAATATCACTGCTCCAAA-CAGCTCACTA
* *
45352418 ATTTAAGATCGCAGCTTAAGTTCATTCAATTTAACATCATTAATAATTTTATCTT-AGTTAGCCA
1 ATTTAAGATCGCAGCTTAAGTTCATTCAATTTAACATCATAAACAATTTTAT-TTGAGTTAGCCA
*** *
45352482 ATTTAATATTGTTGCTCTAAACAGCTCACTA
65 ATTTAATATCACTGCTCCAAACAGCTCACTA
* * * * * * **
45352513 ATTTAATATCGCA-ATCTAAGTACAATCGATTTAACATCATGAACAATTTTATTTGAGTTAGCTG
1 ATTTAAGATCGCAGCT-TAAGTTCATTCAATTTAACATCATAAACAATTTTATTTGAGTTAGCCA
* * * * **
45352577 ATTTACTATCAGTACTCTAAACAGCTCGTTA
65 ATTTAATATCACTGCTCCAAACAGCTCACTA
45352608 ATTTAA
1 ATTTAA
45352614 TATCATAACT
Statistics
Matches: 162, Mismatches: 31, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
94 3 0.02
95 87 0.54
96 70 0.43
97 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (95 bp):
ATTTAAGATCGCAGCTTAAGTTCATTCAATTTAACATCATAAACAATTTTATTTGAGTTAGCCAA
TTTAATATCACTGCTCCAAACAGCTCACTA
Found at i:45352744 original size:132 final size:132
Alignment explanation
Indices: 45352505--45352823 Score: 377
Period size: 132 Copynumber: 2.4 Consensus size: 132
45352495 GCTCTAAACA
* * * *
45352505 GCTCACTAATTTAATATCGCAATCTAAGTACAATCGATTTAACATCATGAACAATTTTATTTGAG
1 GCTCACTAATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATTTTATTTGAG
** * * * * *
45352570 TTAGCTGATTTACTATCAGTACTCTAAACAGCTCGTTAATTTAATATCATAACTAATATCATTAA
66 TTAGCCAATTTACTATCACTAATCTAAACAGCTCATTAATTTAAGATCACAACTAATATCATTAA
45352635 CG
131 CG
** *
45352637 GCTCACTAATTTAATATCGCGGCCTAAGTTCATTCGATTTAATATCATGAATAATTTTATTTGAG
1 GCTCACTAATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATTTTATTTGAG
* ** * * * *
45352702 TTAGCCAATTTACTGTCACTAATCTAAATTGCTCATTGATTTAAGATCGCAGCTGATATCATTAA
66 TTAGCCAATTTACTATCACTAATCTAAACAGCTCATTAATTTAAGATCACAACTAATATCATTAA
*
45352767 TG
131 CG
* * * * * * *
45352769 ACTCACTAATATAAGATTGCAACCTAAGTTCATTTGAATTAATGTCATGAACAAT
1 GCTCACTAATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAAT
45352824 CTCATCTGTG
Statistics
Matches: 155, Mismatches: 32, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
132 155 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.37
Consensus pattern (132 bp):
GCTCACTAATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATTTTATTTGAG
TTAGCCAATTTACTATCACTAATCTAAACAGCTCATTAATTTAAGATCACAACTAATATCATTAA
CG
Found at i:45355230 original size:6 final size:6
Alignment explanation
Indices: 45355219--45355251 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
45355209 GGATTGCAAG
*
45355219 TTTCCA TTTCCA TTTCCA TTTTCA TTTCCA TTT
1 TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTT
45355252 TTGGAAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (6 bp):
TTTCCA
Found at i:45364412 original size:21 final size:21
Alignment explanation
Indices: 45364334--45364413 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 21
45364324 GTGAACCCCC
* *
45364334 TATGTTATTACATGCGAAAAT
1 TATGTTATGACATGCGAACAT
* *
45364355 TAGGTTATGACATGCGAACTT
1 TATGTTATGACATGCGAACAT
* *
45364376 TAAACTGTTATTACATGCGAACCT
1 T--A-TGTTATGACATGCGAACAT
*
45364400 TATGTTGTGACATG
1 TATGTTATGACATG
45364414 TTAATCTATT
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
21 28 0.60
22 1 0.02
23 1 0.02
24 17 0.36
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (21 bp):
TATGTTATGACATGCGAACAT
Found at i:45365726 original size:15 final size:16
Alignment explanation
Indices: 45365706--45365743 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
45365696 AATTGGAAAG
* *
45365706 ATGAAAAGTT-ATTAA
1 ATGAAAACTTAATAAA
45365721 ATGAAAACTTAATAAA
1 ATGAAAACTTAATAAA
45365737 ATGAAAA
1 ATGAAAA
45365744 AGAAAACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.61, C:0.03, G:0.11, T:0.26
Consensus pattern (16 bp):
ATGAAAACTTAATAAA
Found at i:45371072 original size:21 final size:21
Alignment explanation
Indices: 45371048--45371101 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
45371038 TACATAGGGT
*
45371048 CGTGTGACCCTAGGACATGCC
1 CGTGTGACCCTAGGACAAGCC
45371069 CGTGTGACCCTAGGACAAGCC
1 CGTGTGACCCTAGGACAAGCC
45371090 CGTGTGACCCTA
1 CGTGTGACCCTA
45371102 TTAAAGAGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (21 bp):
CGTGTGACCCTAGGACAAGCC
Found at i:45373701 original size:32 final size:32
Alignment explanation
Indices: 45373664--45373728 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
45373654 CTTAGAACTG
* *
45373664 TGTAATATCTTCCATATTTCTTAATGAATCAA
1 TGTAATATATTCCATATTTCTTAATAAATCAA
45373696 TGTAATATATTCCATATTTCTTAATAAATCAA
1 TGTAATATATTCCATATTTCTTAATAAATCAA
45373728 T
1 T
45373729 CCTTTATCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.37, C:0.14, G:0.05, T:0.45
Consensus pattern (32 bp):
TGTAATATATTCCATATTTCTTAATAAATCAA
Found at i:45374755 original size:13 final size:13
Alignment explanation
Indices: 45374737--45374800 Score: 51
Period size: 13 Copynumber: 4.9 Consensus size: 13
45374727 AGTTTAACAT
45374737 TGCTTTTGAAAAC
1 TGCTTTTGAAAAC
* *
45374750 TGCTTTTAAAAAG
1 TGCTTTTGAAAAC
*
45374763 TG-TTGTGGAAAAGC
1 TGCTT-TTGAAAA-C
*
45374777 -GCTTTTGAAAAA
1 TGCTTTTGAAAAC
*
45374789 TACTTTTGAAAA
1 TGCTTTTGAAAA
45374801 ATTTTGTTTA
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
12 2 0.05
13 35 0.90
14 2 0.05
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAC
Found at i:45375690 original size:27 final size:27
Alignment explanation
Indices: 45375660--45375753 Score: 118
Period size: 27 Copynumber: 3.5 Consensus size: 27
45375650 AATCAGGGTA
45375660 TGCCACAAAGG-TAGTTCTTTTAGAGTT
1 TGCCACAAAGGCTA-TTCTTTTAGAGTT
45375687 TGCCACAAAGGCTATTCTTTTAGAGTT
1 TGCCACAAAGGCTATTCTTTTAGAGTT
* * * *
45375714 TGCCTCAAAGGCTTTTCTTTCAGATTT
1 TGCCACAAAGGCTATTCTTTTAGAGTT
* *
45375741 TTCCATAAAGGCT
1 TGCCACAAAGGCT
45375754 CACAAAATGG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 57 0.97
28 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
TGCCACAAAGGCTATTCTTTTAGAGTT
Found at i:45381932 original size:31 final size:31
Alignment explanation
Indices: 45381894--45381958 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
45381884 CCATAGCCCT
45381894 TTTTCATATTTCATAACACTGGGCCGAAGCC
1 TTTTCATATTTCATAACACTGGGCCGAAGCC
**
45381925 TTTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTTCATATTTCATAACACTGGGCCGAAGCC
45381956 TTT
1 TTT
45381959 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (31 bp):
TTTTCATATTTCATAACACTGGGCCGAAGCC
Found at i:45382206 original size:23 final size:24
Alignment explanation
Indices: 45382153--45382294 Score: 193
Period size: 23 Copynumber: 6.0 Consensus size: 24
45382143 GCTTTATCAT
*
45382153 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
45382178 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* * *
45382201 ACAACTGGGGCATAAGACCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
45382226 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
45382249 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
45382272 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
45382295 GTACTTCCTC
Statistics
Matches: 106, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
23 60 0.57
24 20 0.19
25 26 0.25
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:45382230 original size:48 final size:47
Alignment explanation
Indices: 45382174--45382294 Score: 192
Period size: 48 Copynumber: 2.6 Consensus size: 47
45382164 CCTAGCCTCT
45382174 TTTAATAACTGGGGCA-AAGCCCTTTTAACAACTGGGGCATAAGACC
1 TTTAATAACTGGGGCATAAGCCCTTTTAACAACTGGGGCATAAGACC
* *
45382220 TTTATCATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCCTTTTAACAACTGGGGCATAAGACC
45382268 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
45382295 GTACTTCCTC
Statistics
Matches: 69, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
46 23 0.33
47 3 0.04
48 37 0.54
49 6 0.09
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAACAACTGGGGCATAAGACC
Found at i:45382366 original size:9 final size:9
Alignment explanation
Indices: 45382352--45382428 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
45382342 ATCTCGTGTG
45382352 CATATCATA
1 CATATCATA
*
45382361 CATATCATGTG
1 CATATCA--TA
45382372 CATATCATA
1 CATATCATA
* *
45382381 CATGTCATGTG
1 CATATCA--TA
45382392 CATATCATA
1 CATATCATA
*
45382401 CATATCATGTG
1 CATATCA--TA
*
45382412 CATACCATA
1 CATATCATA
45382421 CATATCAT
1 CATATCAT
45382429 GTTTATCAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:45382371 original size:20 final size:20
Alignment explanation
Indices: 45382348--45382430 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
45382338 GAACATCTCG
45382348 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
45382368 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
45382388 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
45382408 TGTGCATACCATACATATCA
1 TGTGCATATCATACATATCA
45382428 TGT
1 TGT
45382431 TTATCAAAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:45382495 original size:25 final size:25
Alignment explanation
Indices: 45382467--45382514 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
45382457 ATGTATAAAC
* * *
45382467 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
45382492 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
45382515 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:45385508 original size:42 final size:42
Alignment explanation
Indices: 45385442--45385534 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
45385432 GGCTATTACA
*
45385442 ACACGGCCTAAGACACGAGCGTGTCTCTTGGTCGTGTGAGTC
1 ACACGGCCTAAGACACGAGCGTGTCTCTTGGCCGTGTGAGTC
* *
45385484 ACACAGCCTAAGACACGAGTGTGTCTCTTGGCCGTGTGAGTC
1 ACACGGCCTAAGACACGAGCGTGTCTCTTGGCCGTGTGAGTC
45385526 ACACGGCCT
1 ACACGGCCT
45385535 GTCCACACGG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (42 bp):
ACACGGCCTAAGACACGAGCGTGTCTCTTGGCCGTGTGAGTC
Found at i:45392399 original size:46 final size:46
Alignment explanation
Indices: 45392341--45392661 Score: 412
Period size: 46 Copynumber: 7.0 Consensus size: 46
45392331 AGTGTGCTCT
*
45392341 CTGATA-GAAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
45392387 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
45392433 CTGATATGAAACGTGTATGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
45392479 TTGATATGAAATGTGTATGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
45392525 GTGACATGATATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** *
45392571 GTGACGGGGAAATGAATAAGACCATGGTTGAATGATACCATGGCAAC
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
45392618 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
45392662 TCATGTTGAA
Statistics
Matches: 248, Mismatches: 24, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.00
46 208 0.84
47 39 0.16
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:45395878 original size:46 final size:46
Alignment explanation
Indices: 45395828--45395946 Score: 193
Period size: 46 Copynumber: 2.6 Consensus size: 46
45395818 ACATATCTCA
* * *
45395828 CATTAGCCATTTGGCTTTACCTCATATCCATCTCATACACGTTTTG
1 CATTAGCCATTCGGCTTTACCTCATATCCATCGCATACACGTTTCG
45395874 CATTAGCCATTCGGCTTTACCTCATATCCATCGCATACACGTTTCG
1 CATTAGCCATTCGGCTTTACCTCATATCCATCGCATACACGTTTCG
* *
45395920 CATTAGCCATTCGGCTTTGCCACATAT
1 CATTAGCCATTCGGCTTTACCTCATAT
45395947 ATACACTTCC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.35
Consensus pattern (46 bp):
CATTAGCCATTCGGCTTTACCTCATATCCATCGCATACACGTTTCG
Found at i:45395991 original size:47 final size:47
Alignment explanation
Indices: 45395960--45396153 Score: 327
Period size: 47 Copynumber: 4.1 Consensus size: 47
45395950 CACTTCCACG
*
45395960 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACA
*
45396007 TTCAACACATTGGCCATTC-AGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGA-CCTTATCACATATATGCATGTTCACA
* *
45396054 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACA
*
45396101 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACA
45396148 TTCATC
1 TTCATC
45396154 TCATAAAATC
Statistics
Matches: 140, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.01
47 139 0.99
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACA
Found at i:45396037 original size:22 final size:22
Alignment explanation
Indices: 45396012--45396132 Score: 63
Period size: 22 Copynumber: 5.2 Consensus size: 22
45396002 TCACATTCAA
45396012 CACATTGGCCATTCAGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
* *
45396034 CACATATATG-CATGTTCA-CATTCAT
1 CACAT-T-GGCCA--TTCAGCCTT-AT
*
45396059 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
*
45396081 CACGTATAT-G-CATGTTCA-CATTCAT
1 CAC--AT-TGGCCA--TTCAGCCTT-AT
*
45396106 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
45396128 CACAT
1 CACAT
45396133 ATATGCATGT
Statistics
Matches: 74, Mismatches: 9, Indels: 32
0.64 0.08 0.28
Matches are distributed among these distances:
22 24 0.32
23 15 0.20
24 15 0.20
25 20 0.27
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
CACATTGGCCATTCAGCCTTAT
Found at i:45396189 original size:94 final size:91
Alignment explanation
Indices: 45395985--45396178 Score: 232
Period size: 94 Copynumber: 2.1 Consensus size: 91
45395975 ATTCTACCTT
*
45395985 ATCACATATATGCATGTTCACATTCAACACATTGGCCATTCAGCCTTATCACATATATGCATGTT
1 ATCAAATATATGCATGTTCACATTCAACACATTGGCCATTCAGCCTTATCACATATATGCATGTT
** * *
45396050 CACATTCATCACATTGGCCATTCGGCCTT
66 CACATTCATCACATT-GAAAAT--GCCTA
** * *
45396079 ATCACGTATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 ATCAAATATATGCATGTTCACATTCAACACATTGGCCATTCAGCCTTATCACATATATGCATGTT
*
45396144 CACATTCATCTCA-T-AAAAT-CCTAA
66 CACATTCATCACATTGAAAATGCCT-A
45396168 ATCAAAATATA
1 ATC-AAATATA
45396179 AATTTTCATG
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
88 3 0.03
89 3 0.03
90 5 0.06
91 2 0.02
93 1 0.01
94 74 0.84
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (91 bp):
ATCAAATATATGCATGTTCACATTCAACACATTGGCCATTCAGCCTTATCACATATATGCATGTT
CACATTCATCACATTGAAAATGCCTA
Found at i:45399535 original size:25 final size:25
Alignment explanation
Indices: 45399501--45399555 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
45399491 CGGTTAAAGA
45399501 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
45399526 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
45399551 ATTCG
1 ATTCG
45399556 TTATTACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:45399768 original size:40 final size:40
Alignment explanation
Indices: 45399724--45399915 Score: 294
Period size: 40 Copynumber: 4.8 Consensus size: 40
45399714 CCCATCATCG
* * **
45399724 GCACGAATGCCCTTCAGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCA
* * *
45399764 GCACGAATACTCTTCGGGACTTAGCCCGGATACATCACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCA
*
45399804 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCA
* *
45399844 GCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCA
45399884 GCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATA
45399916 TATATAACTC
Statistics
Matches: 138, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCA
Found at i:45399849 original size:80 final size:80
Alignment explanation
Indices: 45399724--45399917 Score: 352
Period size: 80 Copynumber: 2.4 Consensus size: 80
45399714 CCCATCATCG
* * *
45399724 GCACGAATGCCCTTCAGGACTTAGCCCGGATGTAACACCAGCACGAATACTCTTCGGGACTTAGC
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATACTCTTCGGGACTTAGC
45399789 CCGGATACATCACTA
66 CCGGATACATCACTA
*
45399804 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGC
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATACTCTTCGGGACTTAGC
45399869 CCGGATACATCACTA
66 CCGGATACATCACTA
45399884 GCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATA
45399918 TATAACTCTC
Statistics
Matches: 110, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 110 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (80 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATACTCTTCGGGACTTAGC
CCGGATACATCACTA
Found at i:45401467 original size:46 final size:46
Alignment explanation
Indices: 45401399--45401581 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
45401389 TATATATACA
** * * *
45401399 CATCTCATACATATCTCACATTAGCCATTCAGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
45401445 CATCTCATGCACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
45401491 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
* *
45401537 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTGCCACATAT
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATAT
45401582 ATACACTTCC
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 126 1.00
ACGTcount: A:0.23, C:0.32, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:45401626 original size:47 final size:47
Alignment explanation
Indices: 45401555--45401788 Score: 362
Period size: 47 Copynumber: 5.0 Consensus size: 47
45401545 ACACGTTTCG
* * ** * * *
45401555 CATTAGCCATTCGGCTTTGCCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
**
45401602 CATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
45401649 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
45401696 CATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
45401743 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
45401789 TCATAAAATC
Statistics
Matches: 173, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.01
47 172 0.99
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:45401673 original size:22 final size:22
Alignment explanation
Indices: 45401645--45401767 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
45401635 GTTCACATTC
45401645 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
45401667 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
45401691 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* *
45401714 ATCACGTATAT-G-CATGTTC-ACATT
1 ATCAC--AT-TGGCCA--TTCGGCCTT
45401738 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
45401761 ATCACAT
1 ATCACAT
45401768 ATATGCATGT
Statistics
Matches: 75, Mismatches: 10, Indels: 32
0.64 0.09 0.27
Matches are distributed among these distances:
22 26 0.35
23 15 0.20
24 15 0.20
25 19 0.25
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:45401824 original size:94 final size:91
Alignment explanation
Indices: 45401620--45401813 Score: 250
Period size: 94 Copynumber: 2.1 Consensus size: 91
45401610 ATTCTACCTT
*
45401620 ATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 ATCAAATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
** * *
45401685 CACATTCATCACATTGGCCATTCGGCCTT
66 CACATTCATCACATT-GAAAAT--GCCTA
**
45401714 ATCACGTATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 ATCAAATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
*
45401779 CACATTCATCTCA-T-AAAAT-CCTAA
66 CACATTCATCACATTGAAAATGCCT-A
45401803 ATCAAAATATA
1 ATC-AAATATA
45401814 AATTTTCATG
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
88 3 0.03
89 3 0.03
90 5 0.06
91 2 0.02
93 1 0.01
94 76 0.84
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.34
Consensus pattern (91 bp):
ATCAAATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
CACATTCATCACATTGAAAATGCCTA
Found at i:45402442 original size:40 final size:40
Alignment explanation
Indices: 45402393--45402473 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
45402383 TTATTTTGTT
45402393 TGAAACTAGACTCATTAAGGAGTCTAAGCATATAATTTTA
1 TGAAACTAGACTCATTAAGGAGTCTAAGCATATAATTTTA
45402433 TGAAACTAGACTCATTAAGGAGTCTAAGCATATAATTTTA
1 TGAAACTAGACTCATTAAGGAGTCTAAGCATATAATTTTA
45402473 T
1 T
45402474 CTTATAATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (40 bp):
TGAAACTAGACTCATTAAGGAGTCTAAGCATATAATTTTA
Found at i:45407534 original size:46 final size:46
Alignment explanation
Indices: 45407480--45407746 Score: 347
Period size: 46 Copynumber: 5.8 Consensus size: 46
45407470 CTCTGATAGA
*
45407480 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG
* * *
45407526 AAACGTGTAAGACCATGGTTGAAAGATACCATGGCAATCTGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG
* *
45407572 AAATGTGTAAGACCATGGTTGAAATATACCATGGCAACGTGACATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG
* * **
45407618 ATATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACGGGG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAC-ATG
** * *
45407665 AAATGAATAAGACCATGGTTGAATGATACCATGGCAACATGACA-G
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG
* * * *
45407710 AAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 -AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
45407747 TCATGTCGAA
Statistics
Matches: 197, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 157 0.80
47 39 0.20
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG
Found at i:45409617 original size:16 final size:15
Alignment explanation
Indices: 45409590--45409623 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
45409580 ATAACTAGTA
*
45409590 TATAATTATATTTAT
1 TATAATTATATTAAT
45409605 TATAATATATATTAAT
1 TATAAT-TATATTAAT
45409621 TAT
1 TAT
45409624 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:45411982 original size:93 final size:93
Alignment explanation
Indices: 45411870--45412041 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
45411860 CGCCCATAAG
* *
45411870 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
45411935 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
45411963 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
45412028 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
45412042 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:45412038 original size:46 final size:46
Alignment explanation
Indices: 45411863--45412038 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
45411853 TGTAACCCGC
* * *
45411863 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
45411909 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
45411959 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
45412002 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
45412039 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.