Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 169 of 292
Found at i:50181586 original size:27 final size:27
Alignment explanation
Indices: 50181504--50181590 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
50181494 TCTACCCAAC
* *
50181504 AAGGGTATTTCGGTCATTCTACCCTAT
1 AAGGGTATTTCGGTCATTTTACACTAT
* *
50181531 TAGGGTATTTCGGTCATTTTACCCTAT
1 AAGGGTATTTCGGTCATTTTACACTAT
* *
50181558 AAGGGTATTTTGGTTATTTTATCAC-AT
1 AAGGGTATTTCGGTCATTTTA-CACTAT
50181585 AAGGGT
1 AAGGGT
50181591 TTAGGTACAC
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 51 0.96
28 2 0.04
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTCGGTCATTTTACACTAT
Found at i:50181590 original size:54 final size:54
Alignment explanation
Indices: 50181479--50181590 Score: 118
Period size: 54 Copynumber: 2.1 Consensus size: 54
50181469 TACCATATCG
* *
50181479 GGGTATTACAGTCATTCTACCCAACAAGGGTATTTCGGTCATTCTACCCTATTA
1 GGGTATTACAGTCATTCTACCCAACAAGGGTATTTCGGTCATTCTACACTATAA
* * * * * * * *
50181533 GGGTATTTCGGTCATTTTACCCTATAAGGGTATTTTGGTTATTTTATCAC-ATAA
1 GGGTATTACAGTCATTCTACCCAACAAGGGTATTTCGGTCATTCTA-CACTATAA
50181587 GGGT
1 GGGT
50181591 TTAGGTACAC
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
54 45 0.96
55 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (54 bp):
GGGTATTACAGTCATTCTACCCAACAAGGGTATTTCGGTCATTCTACACTATAA
Found at i:50186048 original size:17 final size:18
Alignment explanation
Indices: 50186006--50186054 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
50185996 AGTTGAAAAG
50186006 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
50186025 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
50186042 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
50186055 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:50186943 original size:40 final size:40
Alignment explanation
Indices: 50186877--50187027 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
50186867 AAATTGAATG
* * *
50186877 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
50186916 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
50186956 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
50186996 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
50187028 ACTGATTATA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:50191409 original size:43 final size:44
Alignment explanation
Indices: 50191359--50191446 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
50191349 TATTAATGCA
50191359 AGAAGGTCGAGTT-TGGCCTATGCGTCGAGGCAATTAAAGCCAC
1 AGAAGGTCGAGTTGTGGCCTATGCGTCGAGGCAATTAAAGCCAC
50191402 AGAAGGTCGAGTTGTGGCCTATGCGTCGAGGCAATTAAAGCCAC
1 AGAAGGTCGAGTTGTGGCCTATGCGTCGAGGCAATTAAAGCCAC
50191446 A
1 A
50191447 TGAGAAAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 13 0.30
44 31 0.70
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.20
Consensus pattern (44 bp):
AGAAGGTCGAGTTGTGGCCTATGCGTCGAGGCAATTAAAGCCAC
Found at i:50194101 original size:17 final size:18
Alignment explanation
Indices: 50194059--50194107 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
50194049 AGTTGAAAAG
50194059 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
50194078 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
50194095 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
50194108 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:50194993 original size:40 final size:40
Alignment explanation
Indices: 50194927--50195077 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
50194917 AAATTGAATG
* * *
50194927 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
50194966 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
50195006 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
50195046 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
50195078 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:50195091 original size:40 final size:40
Alignment explanation
Indices: 50194963--50195093 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
50194953 TATGCTGGAA
* * * *
50194963 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
50195003 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
50195043 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
50195083 ATTATATCCGG
1 ATTATATCCGG
50195094 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:50200802 original size:27 final size:27
Alignment explanation
Indices: 50200764--50200818 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
50200754 ATGATTATAA
*
50200764 CCTAGCAGTACACTGTTGGTATTCTAT
1 CCTAGCAATACACTGTTGGTATTCTAT
50200791 CCTAGCAATACACTGTTGGTATTCTAT
1 CCTAGCAATACACTGTTGGTATTCTAT
50200818 C
1 C
50200819 TCAAAACATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (27 bp):
CCTAGCAATACACTGTTGGTATTCTAT
Found at i:50203789 original size:38 final size:38
Alignment explanation
Indices: 50203740--50203817 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
50203730 CCAAAAACTC
50203740 CTCTGGAAAAACATCTTGAAAATCCTTGACGGTTCTAA
1 CTCTGGAAAAACATCTTGAAAATCCTTGACGGTTCTAA
50203778 CTCTGGAAAAACATCTTGAAAATCCTTGACGGTTCTAA
1 CTCTGGAAAAACATCTTGAAAATCCTTGACGGTTCTAA
50203816 CT
1 CT
50203818 TTATCCACTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.29
Consensus pattern (38 bp):
CTCTGGAAAAACATCTTGAAAATCCTTGACGGTTCTAA
Found at i:50206767 original size:27 final size:26
Alignment explanation
Indices: 50206719--50206777 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
50206709 GCGAGGCTGC
*
50206719 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
50206746 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
50206772 CA-ATAT
1 CAGATAT
50206778 ATATATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.14
26 3 0.11
27 21 0.75
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:50206870 original size:27 final size:26
Alignment explanation
Indices: 50206822--50206873 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
50206812 GCGAGGCTGC
*
50206822 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
50206848 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
50206874 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:50214167 original size:27 final size:26
Alignment explanation
Indices: 50214119--50214178 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
50214109 AGCGAGCTGC
*
50214119 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
50214146 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
50214172 CAGATAT
1 CAGATAT
50214179 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:50214191 original size:33 final size:32
Alignment explanation
Indices: 50214140--50214203 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
50214130 ACGAAGTCAC
* *
50214140 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
50214172 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
50214204 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:50224127 original size:40 final size:40
Alignment explanation
Indices: 50224058--50224170 Score: 117
Period size: 40 Copynumber: 2.8 Consensus size: 40
50224048 TTTCAATAAA
* *
50224058 CCGAAGCTATTTCGATA-TCGCACAGTTAGTGCCTCA-TGTAG
1 CCGAAGCTATTTC-AAACTCGCACACTTAGTG--TCATTGTAG
* *
50224099 TCGAAGCTA-TTCCAACTCGCACACTTAGTGTCATTTGTAG
1 CCGAAGCTATTTCAAACTCGCACACTTAGTGTCA-TTGTAG
*
50224139 CCGAAGCTATTTCAAAC-CACACACTTAGTGTC
1 CCGAAGCTATTTCAAACTCGCACACTTAGTGTC
50224171 GAACTTAATC
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
38 3 0.05
39 1 0.02
40 43 0.70
41 14 0.23
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (40 bp):
CCGAAGCTATTTCAAACTCGCACACTTAGTGTCATTGTAG
Found at i:50226596 original size:42 final size:42
Alignment explanation
Indices: 50226547--50226649 Score: 107
Period size: 42 Copynumber: 2.5 Consensus size: 42
50226537 ATCGGTGCCA
* * **
50226547 ATCCCAGATATGGTCTTATACGAAATCTCATTTTGATGCAAT
1 ATCCCAGATATGGTCTTACACGAAATCTCATATCAATGCAAT
* ** * * *
50226589 GTCCCAGACGTAGTCTTACATGAAATCTCATATCAATGCCAT
1 ATCCCAGATATGGTCTTACACGAAATCTCATATCAATGCAAT
*
50226631 ATCCCATATATGGTCTTAC
1 ATCCCAGATATGGTCTTAC
50226650 TTGATAACAC
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (42 bp):
ATCCCAGATATGGTCTTACACGAAATCTCATATCAATGCAAT
Found at i:50231594 original size:28 final size:29
Alignment explanation
Indices: 50231554--50231608 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 29
50231544 CACGAGCTAG
*
50231554 GACACGAGTGTGTCACA-GCCGTGTGAGA
1 GACACGAGCGTGTCACAGGCCGTGTGAGA
* **
50231582 GACACGGGCGTGTGTCAGGCCGTGTGA
1 GACACGAGCGTGTCACAGGCCGTGTGA
50231609 AAACCCCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 13 0.59
29 9 0.41
ACGTcount: A:0.20, C:0.22, G:0.40, T:0.18
Consensus pattern (29 bp):
GACACGAGCGTGTCACAGGCCGTGTGAGA
Found at i:50233216 original size:29 final size:29
Alignment explanation
Indices: 50233183--50233284 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
50233173 GTGACGAGAT
50233183 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
50233212 TGGCACTAAGTGTGCGTGCTGGAAATAT-
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
50233240 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
50233269 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
50233285 AGTCGGAGGG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.38
29 40 0.62
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:50241094 original size:29 final size:28
Alignment explanation
Indices: 50241061--50241219 Score: 133
Period size: 29 Copynumber: 5.6 Consensus size: 28
50241051 GTGACGAGAT
50241061 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAA-ATA
50241090 TGGCACTAAGTGTGCGTGCTGG-AAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAATA
**
50241117 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGG-AAAATA
* ** * ***
50241146 CGGCACTGGGTGTGCGAGCTCGGAGGGTA
1 TGGCACTAAGTGTGCGTGCT-GGAAAATA
** * * *
50241175 TGGCACTGTGTGTGCGGGCT-TAAATTA
1 TGGCACTAAGTGTGCGTGCTGGAAAATA
50241202 CGTGGCACTAAGTGTGCG
1 --TGGCACTAAGTGTGCG
50241220 AAATCGAGTA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
27 26 0.24
28 2 0.02
29 77 0.72
30 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.25
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGTGCTGGAAAATA
Found at i:50241125 original size:27 final size:27
Alignment explanation
Indices: 50241061--50241141 Score: 126
Period size: 27 Copynumber: 2.9 Consensus size: 27
50241051 GTGACGAGAT
50241061 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGG-AA-ATA
50241090 TGGCACTAAGTGTGCGTGCTGGAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATA
**
50241117 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
50241142 AATACGGCAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
27 26 0.52
28 2 0.04
29 22 0.44
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (27 bp):
TGGCACTAAGTGTGCGTGCTGGAAATA
Found at i:50241129 original size:56 final size:58
Alignment explanation
Indices: 50241061--50241220 Score: 157
Period size: 56 Copynumber: 2.8 Consensus size: 58
50241051 GTGACGAGAT
* *
50241061 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCT-GGA-AATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGGAGAATA
* * * ** **
50241117 TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTGGGTGTGCGAGCTCGGAGGGTA
1 TGGCACTAAGTGTGCGAGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGGAGAATA
** * *
50241175 TGGCACTGTGTGTGCGGGCT-TAAAT-TACGTGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA--TGGCACTAAGTGTGCGA
50241221 AATCGAGTAG
Statistics
Matches: 82, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
56 44 0.54
57 6 0.07
58 32 0.39
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.24
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGGAGAATA
Found at i:50243409 original size:30 final size:31
Alignment explanation
Indices: 50243346--50243410 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
50243336 TTGACAATAC
50243346 TATAAGTTTGATTCCTTGGAATGGTATTTAT
1 TATAAGTTTGATTCCTTGGAATGGTATTTAT
50243377 TATAAGTTTGATTCCTTGGAATGGTA-TTAT
1 TATAAGTTTGATTCCTTGGAATGGTATTTAT
50243407 TATA
1 TATA
50243411 CTGTATAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 8 0.24
31 26 0.76
ACGTcount: A:0.28, C:0.06, G:0.18, T:0.48
Consensus pattern (31 bp):
TATAAGTTTGATTCCTTGGAATGGTATTTAT
Found at i:50246267 original size:58 final size:58
Alignment explanation
Indices: 50246197--50246312 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
50246187 TTTCACGTTC
* * *
50246197 TTCCTTTCCCAAATAGATGATCTATTGAGTAACCCTATAAAACAATTAATAAATCATA
1 TTCCTTTCCCAAACAGATGATCCATTAAGTAACCCTATAAAACAATTAATAAATCATA
50246255 TTCCTTTCCCAAACAGATGATCCATTAAGTAACCCTATAAAACAATTAATAAATCATA
1 TTCCTTTCCCAAACAGATGATCCATTAAGTAACCCTATAAAACAATTAATAAATCATA
50246313 CCTCCACTCG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (58 bp):
TTCCTTTCCCAAACAGATGATCCATTAAGTAACCCTATAAAACAATTAATAAATCATA
Found at i:50246735 original size:17 final size:19
Alignment explanation
Indices: 50246713--50246757 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 19
50246703 ATGCCTCTAN
50246713 ATCATGCTCAAGAATG-C-
1 ATCATGCTCAAGAATGACA
*
50246730 ATCATGGC-CAAGTATGACA
1 ATCAT-GCTCAAGAATGACA
50246749 ATCATGCTC
1 ATCATGCTC
50246758 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (19 bp):
ATCATGCTCAAGAATGACA
Found at i:50253769 original size:40 final size:40
Alignment explanation
Indices: 50253724--50253890 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
50253714 CGGAATATAA
50253724 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
50253764 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
50253804 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
50253844 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
50253883 CCGGATAT
1 CCGGATAT
50253891 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50253874 original size:80 final size:79
Alignment explanation
Indices: 50253724--50253890 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
50253714 CGGAATATAA
* *
50253724 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
50253789 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
50253804 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
50253866 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
50253883 CCGGATAT
1 CCGGATAT
50253891 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:50254737 original size:17 final size:19
Alignment explanation
Indices: 50254714--50254759 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
50254704 AAGAAGCATG
50254714 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
50254732 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
50254750 AATCATGCTC
1 AATCATGCTC
50254760 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:50261163 original size:14 final size:14
Alignment explanation
Indices: 50261144--50261172 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
50261134 TTAGACTTAG
50261144 TATTGTAAAAAGTA
1 TATTGTAAAAAGTA
50261158 TATTGTAAAAAGTA
1 TATTGTAAAAAGTA
50261172 T
1 T
50261173 TTTCATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38
Consensus pattern (14 bp):
TATTGTAAAAAGTA
Found at i:50263690 original size:26 final size:26
Alignment explanation
Indices: 50263642--50263691 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
50263632 TTTATACTGA
***
50263642 TTACTGGCAGCTTTGCTGTGATACCG
1 TTACTGGCAGCTTTGCCACGATACCG
*
50263668 TTACTGGTAGCTTTGCCACGATAC
1 TTACTGGCAGCTTTGCCACGATAC
50263692 TGATTAGTGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCCACGATACCG
Found at i:50266363 original size:40 final size:40
Alignment explanation
Indices: 50266273--50266492 Score: 268
Period size: 40 Copynumber: 5.5 Consensus size: 40
50266263 ACCCAAGTAT
* ** * *
50266273 CTTCGGGATTTAG-CCGGATATAACCACTCGCAT-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATGC
* *
50266311 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATGC
* *
50266351 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATGC
* * *
50266391 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCATAAATGC
* *
50266431 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCATAAATGC
50266471 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
50266493 CATTCGAATA
Statistics
Matches: 156, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
38 11 0.07
39 19 0.12
40 122 0.78
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATGC
Found at i:50271817 original size:40 final size:40
Alignment explanation
Indices: 50271758--50271965 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
50271748 CAATTGAATG
* * * *
50271758 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * ** *
50271798 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
50271838 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
50271878 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
50271918 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
50271958 ATATCCGG
1 ATATCCGG
50271966 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:50271896 original size:80 final size:80
Alignment explanation
Indices: 50271759--50271965 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
50271749 AATTGAATGA
* * ** * * *
50271759 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
50271824 TTGTGCTAG-CG-AC
66 TTGTGCAAGTCGTAC
* * *
50271837 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
50271902 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
50271919 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
50271966 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.95
81 2 0.02
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:50279027 original size:40 final size:40
Alignment explanation
Indices: 50278968--50279175 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
50278958 CAATTGAATG
* * * *
50278968 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * ** *
50279008 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
50279048 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
50279088 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
50279128 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
50279168 ATATCCGG
1 ATATCCGG
50279176 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:50279106 original size:80 final size:80
Alignment explanation
Indices: 50278969--50279175 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
50278959 AATTGAATGA
* * ** * * *
50278969 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
50279034 TTGTGCTAG-CG-AC
66 TTGTGCAAGTCGTAC
* * *
50279047 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
50279112 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
50279129 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
50279176 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.95
81 2 0.02
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:50280657 original size:66 final size:68
Alignment explanation
Indices: 50280581--50280767 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
50280571 TAGTACCACT
*
50280581 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
50280643 CACG
65 CACG
50280647 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
50280712 ATCACG
63 ATCACG
50280718 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
50280768 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:50280692 original size:71 final size:71
Alignment explanation
Indices: 50280604--50280767 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50280594 CGATTTGTCT
50280604 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50280669 CTTTCA
66 CTTTCA
50280675 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50280740 CTTTCA
66 CTTTCA
50280746 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
50280768 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:50280805 original size:71 final size:70
Alignment explanation
Indices: 50280604--50280801 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
50280594 CGATTTGTCT
* * *
50280604 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
50280669 CTTTCA
65 CTTTCA
* * *
50280675 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
50280740 CTTTCA
65 CTTTCA
* *
50280746 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
50280802 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:50288227 original size:66 final size:68
Alignment explanation
Indices: 50288151--50288337 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
50288141 TAGTACCACT
*
50288151 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
50288213 CACG
65 CACG
50288217 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
50288282 ATCACG
63 ATCACG
50288288 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
50288338 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:50288262 original size:71 final size:71
Alignment explanation
Indices: 50288174--50288337 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50288164 CGATTTGTCT
50288174 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50288239 CTTTCA
66 CTTTCA
50288245 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50288310 CTTTCA
66 CTTTCA
50288316 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
50288338 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:50288375 original size:71 final size:70
Alignment explanation
Indices: 50288174--50288371 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
50288164 CGATTTGTCT
* * *
50288174 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
50288239 CTTTCA
65 CTTTCA
* * *
50288245 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
50288310 CTTTCA
65 CTTTCA
* *
50288316 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
50288372 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:50292108 original size:40 final size:40
Alignment explanation
Indices: 50292023--50292175 Score: 130
Period size: 40 Copynumber: 3.8 Consensus size: 40
50292013 GGATATAGCG
* * * * ***
50292023 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
50292063 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* ** **
50292103 ACTCGCATAAATGCCTTC-GGATCTTAGTTCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
50292143 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
50292176 CATCATTCGA
Statistics
Matches: 88, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
39 3 0.03
40 75 0.85
41 10 0.11
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:50297805 original size:40 final size:40
Alignment explanation
Indices: 50297731--50297941 Score: 257
Period size: 40 Copynumber: 5.3 Consensus size: 40
50297721 TCTTCAGGAT
** * *
50297731 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
50297769 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
50297809 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
50297849 TTAGCCCGGATATAG-CAACTTGCACAAATGCCTTTGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
50297889 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
50297929 TTAGCCCGGATAT
1 TTAGCCCGGATAT
50297942 CATTCGAATA
Statistics
Matches: 146, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
38 4 0.03
39 16 0.11
40 125 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:50306196 original size:27 final size:27
Alignment explanation
Indices: 50306166--50306228 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 27
50306156 TTTAGCCTTT
*
50306166 ATACTGATTACTGGCAGCTTTGCTGCG
1 ATACTGATTACTAGCAGCTTTGCTGCG
* * *
50306193 ATACCG-TTACTAGCAGTTTTGCTGGG
1 ATACTGATTACTAGCAGCTTTGCTGCG
50306219 ATACTGATTA
1 ATACTGATTA
50306229 GTTCGTAACC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 22 0.73
27 8 0.27
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (27 bp):
ATACTGATTACTAGCAGCTTTGCTGCG
Found at i:50308525 original size:12 final size:12
Alignment explanation
Indices: 50308508--50308532 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50308498 GTAGGTTTCC
50308508 AAAATGGAAATG
1 AAAATGGAAATG
50308520 AAAATGGAAATG
1 AAAATGGAAATG
50308532 A
1 A
50308533 TTCATTTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:50311971 original size:40 final size:40
Alignment explanation
Indices: 50311769--50311971 Score: 219
Period size: 40 Copynumber: 5.1 Consensus size: 40
50311759 TGAATGATAC
* * *
50311769 CCGGGCTAAGTCCCGAAGGCATTTATGCTAATGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
50311809 CCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
50311849 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
** * * ** *
50311889 CCGGGCTAAGACTTGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
50311929 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
50311969 CCG
1 CCG
50311972 ACTAAATTCC
Statistics
Matches: 135, Mismatches: 26, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 132 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:50316641 original size:27 final size:27
Alignment explanation
Indices: 50316584--50316641 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
50316574 GCTCATCTTG
* ** **
50316584 GCTTGAATCCATTTTGTATCTTACATG
1 GCTTGAATCCATTCTACATCTTACAAA
*
50316611 GCTTGAATCCATTCTACATCTTGCAAA
1 GCTTGAATCCATTCTACATCTTACAAA
50316638 GCTT
1 GCTT
50316642 CTTCAATATG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (27 bp):
GCTTGAATCCATTCTACATCTTACAAA
Found at i:50317122 original size:68 final size:68
Alignment explanation
Indices: 50317031--50317157 Score: 175
Period size: 68 Copynumber: 1.9 Consensus size: 68
50317021 TGACAATTTG
** * * *
50317031 CATATAAACACAACACGGACATTGTCACA-GCTCGCATGTTTACACAGTCCACATATTGACATAG
1 CATATAAACACAACACACACATTGTCACATG-TCACATATTTACACAGTCCACACATTGACATAG
50317095 TATA
65 TATA
* *
50317099 CATATAAACACAATACACACATTGTCACATGTCACATATTTACACGGTCCACACATTGA
1 CATATAAACACAACACACACATTGTCACATGTCACATATTTACACAGTCCACACATTGA
50317158 AACAGTTTGT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
68 50 0.98
69 1 0.02
ACGTcount: A:0.38, C:0.26, G:0.11, T:0.25
Consensus pattern (68 bp):
CATATAAACACAACACACACATTGTCACATGTCACATATTTACACAGTCCACACATTGACATAGT
ATA
Found at i:50317270 original size:17 final size:17
Alignment explanation
Indices: 50317168--50317270 Score: 89
Period size: 17 Copynumber: 6.1 Consensus size: 17
50317158 AACAGTTTGT
* * *
50317168 ATATGAACACAGCTAGG
1 ATATAAACACAGCTCGC
* *
50317185 ATATAAACACAGATCTC
1 ATATAAACACAGCTCGC
* **
50317202 TTATAAACACAGCTTTC
1 ATATAAACACAGCTCGC
* * *
50317219 ATATAAACAAAGGTAGC
1 ATATAAACACAGCTCGC
* *
50317236 ATATAAACACAACACGC
1 ATATAAACACAGCTCGC
50317253 ATATAAACACAGCTCGC
1 ATATAAACACAGCTCGC
50317270 A
1 A
50317271 CATTGTCATT
Statistics
Matches: 66, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 66 1.00
ACGTcount: A:0.46, C:0.22, G:0.12, T:0.20
Consensus pattern (17 bp):
ATATAAACACAGCTCGC
Found at i:50323035 original size:42 final size:42
Alignment explanation
Indices: 50322972--50323122 Score: 149
Period size: 42 Copynumber: 3.6 Consensus size: 42
50322962 TAAGATGCCA
* ** * **
50322972 ATGCCATGTCCCAGACGTGGTCTTATATGGGATCTCACATCG
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCACATCG
* **
50323014 ATGCCATATCTCAGATATGGTCTTATACGAAATCTCATTTCG
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCACATCG
* * * * *
50323056 ATGCCATGTCCCAGATGTGGTCTTACACGAAATCTCATATCA
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCACATCG
* * *
50323098 ACGCCATATCCCAAATACGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
50323123 CATGATAACA
Statistics
Matches: 89, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTATACGAAATCTCACATCG
Found at i:50323142 original size:84 final size:84
Alignment explanation
Indices: 50322972--50323144 Score: 186
Period size: 84 Copynumber: 2.1 Consensus size: 84
50322962 TAAGATGCCA
* * ** * * * * *
50322972 ATGCCATGTCCCAGACGTGGTCTTATATGGGATCTCACATCGATGCCATATCTCAGATATGGTCT
1 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCCAAATACGGTCT
* * **
50323037 TATACGAAATCTCATTTCG
66 TACACGAAATCACATACCG
* *
50323056 ATGCCATGTCCCAGATGTGGTCTTACACGAAATCTCATATCAACGCCATATCCCAAATACGGTCT
1 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCCAAATACGGTCT
*
50323121 TACATGATAA-CACATACCG
66 TACACGA-AATCACATACCG
50323140 ATGCC
1 ATGCC
50323145 GATGCCATAT
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
84 70 0.97
85 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (84 bp):
ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCCAAATACGGTCT
TACACGAAATCACATACCG
Found at i:50341048 original size:31 final size:31
Alignment explanation
Indices: 50341007--50341070 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
50340997 CCTTTTCATA
*
50341007 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
** *
50341038 TTTCAAATTTCATATTATTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
50341069 TT
1 TT
50341071 ACGGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:50341309 original size:24 final size:25
Alignment explanation
Indices: 50341282--50341356 Score: 120
Period size: 23 Copynumber: 3.1 Consensus size: 25
50341272 GCCTAGCCTC
*
50341282 TTTTAATAACTAGGGCA-AAGCCCT
1 TTTTAATAACTGGGGCATAAGCCCT
50341306 TTTTAATAACTGGGGCATAAGCCC-
1 TTTTAATAACTGGGGCATAAGCCCT
50341330 -TTTAATAACTGGGGCATAAGCCCT
1 TTTTAATAACTGGGGCATAAGCCCT
50341354 TTT
1 TTT
50341357 GCACTTCCTC
Statistics
Matches: 47, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
23 23 0.49
24 16 0.34
25 8 0.17
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (25 bp):
TTTTAATAACTGGGGCATAAGCCCT
Found at i:50341429 original size:9 final size:9
Alignment explanation
Indices: 50341415--50341491 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
50341405 ATCTCGTGTG
50341415 CATATCATA
1 CATATCATA
*
50341424 CATATCATGTG
1 CATATCA--TA
50341435 CATATCATA
1 CATATCATA
* *
50341444 CGTGTCATGTA
1 CATATCA--TA
50341455 CATATCATA
1 CATATCATA
*
50341464 CATATCATGTG
1 CATATCA--TA
50341475 CATATCATA
1 CATATCATA
50341484 CATATCAT
1 CATATCAT
50341492 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:50341434 original size:20 final size:20
Alignment explanation
Indices: 50341411--50341493 Score: 139
Period size: 20 Copynumber: 4.2 Consensus size: 20
50341401 GAACATCTCG
50341411 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
* *
50341431 TGTGCATATCATACGTGTCA
1 TGTGCATATCATACATATCA
*
50341451 TGTACATATCATACATATCA
1 TGTGCATATCATACATATCA
50341471 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
50341491 TGT
1 TGT
50341494 TTATCAAAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 57 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:50341440 original size:11 final size:11
Alignment explanation
Indices: 50341422--50341493 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
50341412 GTGCATATCA
50341422 TACATATCATG
1 TACATATCATG
*
50341433 TGCATATCA--
1 TACATATCATG
* *
50341442 TACGTGTCATG
1 TACATATCATG
50341453 TACATATCA--
1 TACATATCATG
50341462 TACATATCATG
1 TACATATCATG
*
50341473 TGCATATCA--
1 TACATATCATG
50341482 TACATATCATG
1 TACATATCATG
50341493 T
1 T
50341494 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.36
Consensus pattern (11 bp):
TACATATCATG
Found at i:50341558 original size:25 final size:25
Alignment explanation
Indices: 50341530--50341577 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50341520 ATGTATAAAC
* * *
50341530 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
50341555 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
50341578 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:50342783 original size:27 final size:27
Alignment explanation
Indices: 50342753--50342824 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
50342743 TACCATACAG
* **
50342753 GGGTATTTTGGTAGTTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
** *
50342780 GGGTATTGCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
50342807 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
50342825 GTAAATCGAG
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:50342836 original size:27 final size:27
Alignment explanation
Indices: 50342815--50343345 Score: 570
Period size: 27 Copynumber: 19.7 Consensus size: 27
50342805 AAGGGTATTT
*
50342815 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
50342842 CAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
50342869 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
50342896 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
50342923 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
50342950 -CGATAATTATGTAAATCGGGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
* * *
50342977 TGGTAATTATGTAAAT-TAGGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAA
** *
50343004 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
50343031 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
** *
50343058 CGGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * **
50343085 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
50343112 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
50343139 CAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
50343166 CAATAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
50343193 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
50343220 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
** *
50343247 CGGTAATTCTGTAAATTGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * **
50343274 TGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
50343301 CAGTAATTCTATAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
50343328 CGGTAATTCTGTAAATCG
1 TAGTAATTCTGTAAATCG
50343346 GGAGTACTTT
Statistics
Matches: 440, Mismatches: 52, Indels: 24
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.01
27 430 0.98
28 5 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:50342892 original size:81 final size:81
Alignment explanation
Indices: 50342815--50343345 Score: 676
Period size: 81 Copynumber: 6.6 Consensus size: 81
50342805 AAGGGTATTT
* * * *
50342815 TAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
50342880 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * *
50342896 TGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATG
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
*
50342961 TAAATCGGGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * *
50342977 TGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCT
1 TAGTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCT
*
50343041 GTAAA-CTGAGGGTAAAA
65 ATAAATC-GAGGGTAAAA
** * * ** *
50343058 CGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
50343123 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * ** *
50343139 CAGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCT
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAATGGTAATTCT
*
50343203 GTAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* *
50343220 TAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTTT
1 TAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCT
*
50343284 ACAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* *
50343301 CAGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCG
1 TAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCG
50343346 GGAGTACTTT
Statistics
Matches: 396, Mismatches: 47, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
80 4 0.01
81 390 0.98
82 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:50343376 original size:54 final size:54
Alignment explanation
Indices: 50342817--50343345 Score: 672
Period size: 54 Copynumber: 9.8 Consensus size: 54
50342807 GGGTATTTTA
* * * **
50342817 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* *
50342871 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
50342925 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * **
50342979 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
*
50343033 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** * *
50343087 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* **
50343141 GTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
**
50343195 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
* * * ** *
50343249 GTAATTCTGTAAATTGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
*
50343303 GTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCG
50343346 GGAGTACTTT
Statistics
Matches: 413, Mismatches: 55, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
53 2 0.00
54 408 0.99
55 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:50352452 original size:659 final size:648
Alignment explanation
Indices: 50351188--50352490 Score: 1591
Period size: 659 Copynumber: 2.0 Consensus size: 648
50351178 GCTGGTGAGA
** *
50351188 GTCATTTAATTTCATACTTTTCTATGATAGTATAATGATATTTAAACTAACTGAAAACGTTCATG
1 GTCATTTAATTTCATACTTTTCTATGATAACATAATGATATTTAAACTAACTGAAAACGTTCAAG
* * ** * *
50351253 CACATGTATGATAAGCATGTCATATTCTTTAGGAAAAGAATATTTCATGTACTTTTCATGCATTT
66 CACATGTATGATAAGCATGACATATACTTTAGGAAAAGAATATCACATCTACTTGTCATGCATTT
** * *
50351318 ATTAATCATTGGTGATTGAAATCGAACATAAAACCTTGCATGTTATTAAAGATTAAGTGGGAGAA
131 ATTAATCATTCATGATTGAAATCGAAAAAAAAACCTTGCATGTTATTAAAGATTAAGTGGGAGAA
* * * * * * * * * *
50351383 GGTCCTTAAGCAAGACATTTGACTTTTATCAATGGTCTCTTGTGTTGGCATGACAATTGTTGGCC
196 AGTCCCTAAGCAAGACATATAACCTTCATCAATGGTCTCTTGTGATGGCATGAAAATTGGTGCCC
* * * *
50351448 TCAGGGTAGGTATTGTCATGTGGATTTCTATAAGGATATTTCATTAAAAGACATAACTTTCTTGT
261 TCAAGGTAGGTATTGTCATGTGGATTTCTATAAGGAGATTTCATTAAAAGACATAACTATCATGT
* * * * *
50351513 GATAGCATATGATAGTTTGTTGGCCCTGAAGTAGATATTATCATGTAGAATTTATTAAAGAAGTT
326 GATAGCATATGATAATTTGTTGGCCCTGAAGTAGATATTATCATGTAGAACTCACTAAAGAACTT
* * * * * * *
50351578 TTTTTTTATAGAGGGCAACTAGTCGTACATGTTATTCATAGAGATTGTCCCAAGACGACTCAATT
391 TTTTTTAATAGAGGACAAATAGTCATACACGCTACTCATAGAGATTGTCCCAAGACGACTCAATT
* ** * *
50351643 GTCGTGCATGGAATGATAGGTGTTGAGTTGATGATTATACACTCAAGATCATTCTAGTTAAGTAA
456 ATCGTGCATGGAATGATAAATATTGAGTTGATGATTATACACTCAAGATAATTCTAGTTAAGTAA
* * * ** *
50351708 CTTCCCAAGAAGCTATGCTTAAGTTAGAATGATGGCCAAATGTAAAGTGATTATTAGTACGTGTT
521 CTTCCCAAGAAGCTATGCATAAGTTAGAATAATGGCCAAACGTAAAGCAATTATTAGTACGTGTG
* * * *
50351773 AATTCCTAAGGAATTAGGTTCATGTATTAATTGGATGGAAATCCATATTGTTACTAGTTTAAG
586 AATACCTAAGGAATTAGGTTCACGTATTAAGTGGATGGAAATCCATATTCTTACTAGTTTAAG
* * * * *
50351836 GTCATTTAATTTTATGC-TTTCATATGATAACATGATGATATTTAAATTGACTGAAATGTACGTT
1 GTCATTTAATTTCATACTTTTC-TATGATAACATAATGATATTTAAACTAACTGAAA---ACGTT
* * *
50351900 CAAGCATATGTATGATAAGCATGACATATAGTTTAAGGAAAA-AATGTCACATCTACTTGTCATG
62 CAAGCACATGTATGATAAGCATGACATATACTTT-AGGAAAAGAATATCACATCTACTTGTCATG
* *
50351964 ACA-TT-TTAATCATTCATGATTGAAATCAAGAATAAAAAAAACCTTGCATGTTTTTAAAATATT
126 -CATTTATTAATCATTCATGATTGAAATC--G-A-AAAAAAAACCTTGCATGTTATT-AAAGATT
* *
50352027 GAGTGGGAGAAAGTCCCT-AGACAAGACCTATAACCTTCATCAATGGTCTCTTGTGATGGCATGA
185 AAGTGGGAGAAAGTCCCTAAG-CAAGACATATAACCTTCATCAATGGTCTCTTGTGATGGCATGA
* * * *
50352091 AAATTTGCGTGCCCT-AAGGTAGGTATTGTTATGTGGATTTCGT-TGAGGAGCTTTCCTTAAAAG
249 AAA-TTG-GTGCCCTCAAGGTAGGTATTGTCATGTGGATTTC-TATAAGGAGATTTCATTAAAAG
* * * * *
50352154 AGATTACTATCATGTGATAGCATATGATAATTTTTTGGCCCT-AAGGTAGGTATTATCATGTGGA
311 ACATAACTATCATGTGATAGCATATGATAATTTGTTGGCCCTGAA-GTAGATATTATCATGTAGA
*
50352218 ACTCACTGAAGAAACCTTTTTTTCTAATAGAGGACAAATAGTCATACACGCTACTCATTA-AGAT
375 ACTCACTAAAG-AA-CTTTTTTT-TAATAGAGGACAAATAGTCATACACGCTACTCA-TAGAGAT
* * *
50352282 TGTCCCACGATGACTC-ATTCATGGTGCATGGAATGATAAATATTGAGTTGATGATTATACACTC
436 TGTCCCAAGACGACTCAATT-ATCGTGCATGGAATGATAAATATTGAGTTGATGATTATACACTC
* *
50352346 AAGATAATTCTAGTTAAGTAACTTCCCAAGAAGCTATGCATAAGTTAGAATAATGGTCAAACGTG
500 AAGATAATTCTAGTTAAGTAACTTCCCAAGAAGCTATGCATAAGTTAGAATAATGGCCAAACGTA
* *
50352411 AAGCAATTATTAGTACGTGTGAATACCTAAGGGATTAGGTTCACGTATTAAGTGGATGGAAATTC
565 AAGCAATTATTAGTACGTGTGAATACCTAAGGAATTAGGTTCACGTATTAAGTGGATGGAAATCC
*
50352476 ATGTTCTTACTAGTT
630 ATATTCTTACTAGTT
50352491 GATTAAGATT
Statistics
Matches: 550, Mismatches: 84, Indels: 31
0.83 0.13 0.05
Matches are distributed among these distances:
647 4 0.01
648 44 0.08
650 20 0.04
651 53 0.10
652 10 0.02
653 1 0.00
654 21 0.04
655 62 0.11
656 103 0.19
657 8 0.01
658 10 0.02
659 212 0.39
660 2 0.00
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (648 bp):
GTCATTTAATTTCATACTTTTCTATGATAACATAATGATATTTAAACTAACTGAAAACGTTCAAG
CACATGTATGATAAGCATGACATATACTTTAGGAAAAGAATATCACATCTACTTGTCATGCATTT
ATTAATCATTCATGATTGAAATCGAAAAAAAAACCTTGCATGTTATTAAAGATTAAGTGGGAGAA
AGTCCCTAAGCAAGACATATAACCTTCATCAATGGTCTCTTGTGATGGCATGAAAATTGGTGCCC
TCAAGGTAGGTATTGTCATGTGGATTTCTATAAGGAGATTTCATTAAAAGACATAACTATCATGT
GATAGCATATGATAATTTGTTGGCCCTGAAGTAGATATTATCATGTAGAACTCACTAAAGAACTT
TTTTTTAATAGAGGACAAATAGTCATACACGCTACTCATAGAGATTGTCCCAAGACGACTCAATT
ATCGTGCATGGAATGATAAATATTGAGTTGATGATTATACACTCAAGATAATTCTAGTTAAGTAA
CTTCCCAAGAAGCTATGCATAAGTTAGAATAATGGCCAAACGTAAAGCAATTATTAGTACGTGTG
AATACCTAAGGAATTAGGTTCACGTATTAAGTGGATGGAAATCCATATTCTTACTAGTTTAAG
Found at i:50359678 original size:22 final size:21
Alignment explanation
Indices: 50359635--50359690 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
50359625 AATATACTGC
* *
50359635 CTAAAATAGTTTCAGTATATT
1 CTAACATAGTTTCAGTAAATT
50359656 CTAATCATAGTTTCAG-ACAATT
1 CTAA-CATAGTTTCAGTA-AATT
*
50359678 CTAACAAAGTTTC
1 CTAACATAGTTTC
50359691 GGAAACTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (21 bp):
CTAACATAGTTTCAGTAAATT
Found at i:50363474 original size:16 final size:16
Alignment explanation
Indices: 50363453--50363495 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
50363443 GTGAAATTTA
50363453 AATATTTTATTGAAAT
1 AATATTTTATTGAAAT
*
50363469 AATATTTTAATTGAGAT
1 AATATTTT-ATTGAAAT
50363486 AAT-TTTTATT
1 AATATTTTATT
50363496 TAATAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 3 0.12
16 12 0.48
17 10 0.40
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (16 bp):
AATATTTTATTGAAAT
Found at i:50363515 original size:28 final size:33
Alignment explanation
Indices: 50363451--50363531 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 33
50363441 TTGTGAAATT
*
50363451 TAAATATTTTATTGAAATAATATTTTAATTGAGA
1 TAAAT-TTTTATTGAAATAATATTATAATTGAGA
*
50363485 T-AATTTTTATT-TAATAA-ATTATAATT-A-A
1 TAAATTTTTATTGAAATAATATTATAATTGAGA
*
50363513 TAAATTTTTCTATGAAATA
1 TAAATTTTTAT-TGAAATA
50363532 GCTAAAATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
28 2 0.05
29 9 0.22
30 9 0.22
31 9 0.22
32 7 0.17
33 3 0.08
34 1 0.03
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (33 bp):
TAAATTTTTATTGAAATAATATTATAATTGAGA
Found at i:50374144 original size:40 final size:40
Alignment explanation
Indices: 50373985--50374164 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
50373975 GATGTCCAGG
* * *
50373985 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGA
1 CTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGA
50374025 CTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
1 CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
* * *
50374065 CTAAGAT-TCGAAGGCATTTGTGTGAGTTACTAAATCCGGG
1 CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
* * *
50374105 TTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGA
* *
50374145 CTATGTCCCGAAGGTATTTG
1 CTAAGTCCCGAAGGCATTTG
50374165 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
39 1 0.01
40 112 0.91
41 10 0.08
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
CTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
Found at i:50374178 original size:40 final size:40
Alignment explanation
Indices: 50373983--50374183 Score: 110
Period size: 40 Copynumber: 5.0 Consensus size: 40
50373973 ATGATGTCCA
** * *
50373983 GGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGAAC-GAGCT-ACTATAACCG
* ** *
50374023 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCG
1 GGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA-CCG
* * *** *
50374063 GACTAAGAT-TCGAAGGCATTTGTGTGAGTTACTA-AATCCG
1 GGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA-CCG
* **
50374103 GGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAACCG
* * *
50374143 GGCTATGTCCCGAAGGTATTTGAACGAG-TAGCTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGAACGAGCTA-CTATAACCG
50374183 G
1 G
50374184 TTAAACTCCG
Statistics
Matches: 138, Mismatches: 16, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
39 4 0.03
40 123 0.89
41 11 0.08
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAACCG
Found at i:50374182 original size:80 final size:80
Alignment explanation
Indices: 50374013--50374197 Score: 184
Period size: 80 Copynumber: 2.3 Consensus size: 80
50374003 GTGCTAAGTG
** * *
50374013 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATTCGAAG
1 ACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
***
50374078 GCATTTGTGTGAGTT
66 GCATTTGAACGAGTT
* * *
50374093 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCG
1 ACTATATCCGGGTTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCG
*
50374155 AAGGTATTTGAACGAG-T
63 AAGGCATTTGAACGAGTT
50374172 AGCTATATCC-GGTTAA-ACTCCGAAGG
1 A-CTATATCCGGGTTAAGA-TCCGAAGG
50374198 TACGTGATTC
Statistics
Matches: 87, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
79 17 0.20
80 68 0.78
81 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (80 bp):
ACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
GCATTTGAACGAGTT
Found at i:50379519 original size:47 final size:46
Alignment explanation
Indices: 50379364--50379583 Score: 162
Period size: 47 Copynumber: 4.7 Consensus size: 46
50379354 AATATATTGT
* * * * *
50379364 CGATGCCATGTCCCAGACATGGTCTAATACTGGCTCTCATATACGCGTGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATA-ATGAG-GC
* * ** * *
50379414 TGACGCATGTCCCAGACATGTCTTACACCAGC-A-CA-ACTTTTA-GC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTATCATA--ATGAGGC
* *
50379458 CGATGCGTGTCCCAGACACGTCTTACACTGGCTATCACT-ATCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTATCA-TAAT-GAGGC
* *
50379505 CGATGCATGTCCCAGACATTGTCTTACACTGGCTGTCATAATGCGGC
1 CGATGCATGTCCCAGACA-TGTCTTACACTGGCTATCATAATGAGGC
* * *
50379552 TGAAGCACGTCCCAGACATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
50379584 GCACAAATCA
Statistics
Matches: 135, Mismatches: 26, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
44 28 0.21
45 3 0.02
46 20 0.15
47 39 0.29
48 28 0.21
49 14 0.10
50 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.25
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTATCATAATGAGGC
Found at i:50383835 original size:23 final size:23
Alignment explanation
Indices: 50383809--50383861 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
50383799 TCTAAATCCA
*
50383809 TTGTGGCATTTTCTATAAAGCCT
1 TTGTGGCATGTTCTATAAAGCCT
* **
50383832 TTGTAGTGTGTTCTATAAAGCCT
1 TTGTGGCATGTTCTATAAAGCCT
*
50383855 CTGTGGC
1 TTGTGGC
50383862 TTATTCTGTG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.42
Consensus pattern (23 bp):
TTGTGGCATGTTCTATAAAGCCT
Found at i:50383868 original size:23 final size:22
Alignment explanation
Indices: 50383810--50383868 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 22
50383800 CTAAATCCAT
*
50383810 TGTGGCATTTTCTATAAAGCCTT
1 TGTGGC-TTTTCTATAAAGCCTC
*
50383833 TGTAGTG-TGTTCTATAAAGCCTC
1 TGT-G-GCTTTTCTATAAAGCCTC
50383856 TGTGGCTTATTCT
1 TGTGGCTT-TTCT
50383869 GTGATGCCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
21 1 0.03
22 2 0.07
23 24 0.83
24 1 0.03
25 1 0.03
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.44
Consensus pattern (22 bp):
TGTGGCTTTTCTATAAAGCCTC
Found at i:50389173 original size:21 final size:21
Alignment explanation
Indices: 50389148--50389192 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
50389138 TACTGATTGT
50389148 TTGTAGGTCTACTATTAGAAG
1 TTGTAGGTCTACTATTAGAAG
50389169 TTGTAGGTCTACTATTAGAAG
1 TTGTAGGTCTACTATTAGAAG
50389190 TTG
1 TTG
50389193 GTTCTAGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.27, C:0.09, G:0.24, T:0.40
Consensus pattern (21 bp):
TTGTAGGTCTACTATTAGAAG
Found at i:50392016 original size:47 final size:47
Alignment explanation
Indices: 50391953--50392341 Score: 616
Period size: 47 Copynumber: 8.3 Consensus size: 47
50391943 CCCTTCGGGA
* *
50391953 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
50392000 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
50392047 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
50392094 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
50392141 CCTATCACATATCTACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
50392188 CCTATCACATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
50392235 CCTATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50392282 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50392329 CTTATCACATATA
1 CTTATCACATATA
50392342 CATATCTTGT
Statistics
Matches: 320, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 320 1.00
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:50392291 original size:22 final size:22
Alignment explanation
Indices: 50392263--50392338 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
50392253 TTTCACATTC
50392263 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
50392285 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
50392309 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
50392332 ATCACAT
1 ATCACAT
50392339 ATACATATCT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:50398796 original size:25 final size:25
Alignment explanation
Indices: 50398768--50398815 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50398758 TTATACCATG
* * *
50398768 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
50398793 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50398816 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50398884 original size:20 final size:20
Alignment explanation
Indices: 50398859--50398917 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
50398849 TAAATATGGT
50398859 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
50398879 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
50398899 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
50398918 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:50398899 original size:11 final size:11
Alignment explanation
Indices: 50398863--50398917 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
50398853 TATGGTATGT
50398863 ATGATATGCAC
1 ATGATATGCAC
* *
50398874 ATGAAATG--T
1 ATGATATGCAC
50398883 ATGATATGCAC
1 ATGATATGCAC
*
50398894 ATGATATG--T
1 ATGATATGCAC
50398903 ATGATATGCAC
1 ATGATATGCAC
50398914 ATGA
1 ATGA
50398918 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:50398995 original size:24 final size:24
Alignment explanation
Indices: 50398968--50399086 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
50398958 GAGGAAGTGA
*
50398968 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
50398992 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
50399015 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
50399039 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
50399063 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50399087 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:50399037 original size:47 final size:48
Alignment explanation
Indices: 50398968--50399086 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
50398958 GAGGAAGTGA
50398968 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
50399015 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
50399063 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50399087 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:50399313 original size:31 final size:31
Alignment explanation
Indices: 50399278--50399341 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
50399268 CGTTTACAGT
50399278 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
50399309 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50399340 AA
1 AA
50399342 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50406859 original size:25 final size:25
Alignment explanation
Indices: 50406831--50406878 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50406821 TTATACCATG
* * *
50406831 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
50406856 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50406879 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50406947 original size:20 final size:20
Alignment explanation
Indices: 50406922--50406980 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
50406912 TAAATATGGT
50406922 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
50406942 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
50406962 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
50406981 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:50406962 original size:11 final size:11
Alignment explanation
Indices: 50406926--50406980 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
50406916 TATGGTATGT
50406926 ATGATATGCAC
1 ATGATATGCAC
* *
50406937 ATGAAATG--T
1 ATGATATGCAC
50406946 ATGATATGCAC
1 ATGATATGCAC
*
50406957 ATGATATG--T
1 ATGATATGCAC
50406966 ATGATATGCAC
1 ATGATATGCAC
50406977 ATGA
1 ATGA
50406981 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:50407058 original size:24 final size:24
Alignment explanation
Indices: 50407031--50407149 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
50407021 GAGGAAGTGA
*
50407031 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
50407055 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
50407078 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
50407102 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
50407126 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50407150 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:50407100 original size:47 final size:48
Alignment explanation
Indices: 50407031--50407149 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
50407021 GAGGAAGTGA
50407031 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
50407078 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
50407126 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50407150 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:50407375 original size:31 final size:31
Alignment explanation
Indices: 50407340--50407403 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
50407330 CGTTTACAGT
50407340 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
50407371 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50407402 AA
1 AA
50407404 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50413095 original size:12 final size:12
Alignment explanation
Indices: 50413078--50413102 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50413068 ATGTAAATGA
50413078 TCTTGATGATTT
1 TCTTGATGATTT
50413090 TCTTGATGATTT
1 TCTTGATGATTT
50413102 T
1 T
50413103 TGTATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:50413930 original size:47 final size:46
Alignment explanation
Indices: 50413818--50414136 Score: 251
Period size: 47 Copynumber: 6.8 Consensus size: 46
50413808 GATTACTTAT
* * * *
50413818 GTGCCAGTGTAAGACATGTCTGGGGCAT-GCATCGGCCATATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTAGA-GATGA
*
50413864 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC-TAGAGATGA
*
50413912 GTGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGACGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGGCATCGG-CTAGA-GATGA
* *
50413959 -TAGCCAGTGTAAGACATGTCTAGGACATGG-ATCGGCT-GAGA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTAGAGATG-A
* * ** *
50414003 GTGCTAGTGTAAGACATGTCTGGGACAT-GTATCAAC-ACGTATATACGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTA-G-AGAT--GA
* * * * *
50414051 GAGCTAGTATAAGACCATGTCAGGGACATGGCATCGGCCTTGATGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGG-CTAGA-GATGA
* *
50414100 -TAGCCAGTGTAAGACCATATCTGGGACATGACATCGG
1 GT-GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGG
50414137 TAACTTATCC
Statistics
Matches: 222, Mismatches: 29, Indels: 41
0.76 0.10 0.14
Matches are distributed among these distances:
43 2 0.01
44 30 0.14
45 4 0.02
46 28 0.13
47 63 0.28
48 38 0.17
49 48 0.22
50 5 0.02
51 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTAGAGATGA
Found at i:50413979 original size:94 final size:92
Alignment explanation
Indices: 50413818--50414136 Score: 303
Period size: 94 Copynumber: 3.4 Consensus size: 92
50413808 GATTACTTAT
*
50413818 GTGCCAGTGTAAGACATGTCTGGGGCATGCATCGGCCAT--ATTATGAGT-GCCAGTGTAAGACC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-TATGA-TAGCCAGTGTAAGACC
*
50413880 ATGTCTGGGACATGGCATTGGCGTAGAGATGA
63 ATGTCTGGGACATGGCATCGGC-T-GAGATGA
*
50413912 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGATAGCCAGTGTAAGA-CAT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-TATGATAGCCAGTGTAAGACCAT
* *
50413976 GTCTAGGACATGG-ATCGGCTGAGA-GTT
65 GTCTGGGACATGGCATCGGCTGAGATG-A
* * ** * * * *
50414003 GTGCTAGTGTAAGACATGTCTGGGACATGTATC-AACACGTATATACGAGAGCTAGTATAAGACC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-ATAT--GATAGCCAGTGTAAGACC
*
50414067 ATGTCAGGGACATGGCATCGGCCTTGATGATGA
63 ATGTCTGGGACATGGCATCGG-C-TGA-GATGA
*
50414100 -TAGCCAGTGTAAGACCATATCTGGGACATGACATCGG
1 GT-GCCAGTGTAAGA-CATGTCTGGGACATG-CATCGG
50414137 TAACTTATCC
Statistics
Matches: 186, Mismatches: 22, Indels: 28
0.79 0.09 0.12
Matches are distributed among these distances:
90 6 0.03
91 36 0.19
92 14 0.08
93 20 0.11
94 57 0.31
95 18 0.10
96 4 0.02
97 13 0.07
98 15 0.08
99 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (92 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATATGATAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCTGAGATGA
Found at i:50415746 original size:22 final size:22
Alignment explanation
Indices: 50415721--50415766 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
50415711 CTTCGAATGA
*
50415721 TGGATGCTTGGTATTCGAAGTT
1 TGGATGCTTGGTATTAGAAGTT
*
50415743 TGGATGCTTGGTATTAGGAGTT
1 TGGATGCTTGGTATTAGAAGTT
50415765 TG
1 TG
50415767 TTCATTCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.17, C:0.07, G:0.35, T:0.41
Consensus pattern (22 bp):
TGGATGCTTGGTATTAGAAGTT
Found at i:50418379 original size:14 final size:14
Alignment explanation
Indices: 50418360--50418386 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50418350 GTTAGTGCAA
50418360 CCAGAGTCGGGCAG
1 CCAGAGTCGGGCAG
50418374 CCAGAGTCGGGCA
1 CCAGAGTCGGGCA
50418387 AGGAATTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.30, G:0.41, T:0.07
Consensus pattern (14 bp):
CCAGAGTCGGGCAG
Found at i:50420777 original size:12 final size:12
Alignment explanation
Indices: 50420760--50420784 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50420750 ATGTAAGTGA
50420760 TCTTGATGATTT
1 TCTTGATGATTT
50420772 TCTTGATGATTT
1 TCTTGATGATTT
50420784 T
1 T
50420785 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:50429321 original size:2 final size:2
Alignment explanation
Indices: 50429314--50429353 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
50429304 TTTTAAAGAA
*
50429314 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50429354 GTGATGCGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:50429625 original size:42 final size:43
Alignment explanation
Indices: 50429560--50429663 Score: 122
Period size: 43 Copynumber: 2.4 Consensus size: 43
50429550 CATTGACTTA
* * *
50429560 TGATTTACGTGTAAGACCATGTCT-AGGACATTGGCA-TCGTATT
1 TGATTT-CATGTAAGACCATGTCTGA-AACAGTGGCATTCGTATT
* *
50429603 TGATTTCATGTAAGACCTTGTCTGAAACAGTGGCATTGGTATT
1 TGATTTCATGTAAGACCATGTCTGAAACAGTGGCATTCGTATT
*
50429646 TGATTACATGTAAGACCA
1 TGATTTCATGTAAGACCA
50429664 CGTTTGGGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 23 0.44
43 29 0.56
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCTGAAACAGTGGCATTCGTATT
Found at i:50434115 original size:15 final size:14
Alignment explanation
Indices: 50434091--50434131 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 14
50434081 ATTACAAAAG
50434091 TTATAATATTTTAT
1 TTATAATATTTTAT
50434105 TTATAAATATTTTA-
1 TTAT-AATATTTTAT
50434119 TTA-AAT-TTTTAT
1 TTATAATATTTTAT
50434131 T
1 T
50434132 ACAAAAGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 5 0.20
12 4 0.16
14 7 0.28
15 9 0.36
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTATAATATTTTAT
Found at i:50436695 original size:40 final size:40
Alignment explanation
Indices: 50436646--50436813 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
50436636 TCTTCGGAAT
* *
50436646 TTAG-CCGGATATAACCACAAGCA-AAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAA-TGCCTTCGGGTC
* * *** *
50436685 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
50436725 TTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
50436765 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
50436805 TTAGCCCGG
1 TTAGCCCGG
50436814 GTATCATTCA
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.03
40 101 0.94
41 4 0.04
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:50450187 original size:8 final size:8
Alignment explanation
Indices: 50450174--50450198 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
50450164 CTAGATCGGC
50450174 AAAAGCCG
1 AAAAGCCG
50450182 AAAAGCCG
1 AAAAGCCG
50450190 AAAAGCCG
1 AAAAGCCG
50450198 A
1 A
50450199 CATTTGTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.24, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:50455783 original size:24 final size:25
Alignment explanation
Indices: 50455736--50455783 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
50455726 TCCGAGCTAA
**
50455736 TCAGGAAACTCATAAGAGTTTTTAC
1 TCAGGAAACTCATAAGAGCATTTAC
*
50455761 TCAGGAAGCTCAT-AGAGCATTTA
1 TCAGGAAACTCATAAGAGCATTTA
50455784 AGATATTCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (25 bp):
TCAGGAAACTCATAAGAGCATTTAC
Found at i:50459456 original size:40 final size:40
Alignment explanation
Indices: 50459411--50459541 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
50459401 CGGAATATAA
50459411 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
50459451 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
50459491 CCGGATATAGCCACTTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTT-GCACAAATGCCTTCGGGTCTTAGC
50459532 CCGGATATAA
1 CCGGATATAA
50459542 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
40 44 0.59
41 31 0.41
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:50459562 original size:81 final size:79
Alignment explanation
Indices: 50459411--50459578 Score: 198
Period size: 81 Copynumber: 2.1 Consensus size: 79
50459401 CGGAATATAA
*
50459411 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
50459476 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
50459491 CCGGATATAGCCACT-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TA
1 CCGGATATAACCA-TGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGA
*
50459553 ATTGTCTTCGGGCTTAGC
63 A-TGCCTTCGGGCTTAGC
50459571 CCGGATAT
1 CCGGATAT
50459579 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
80 30 0.39
81 46 0.61
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:50467479 original size:40 final size:40
Alignment explanation
Indices: 50467434--50467523 Score: 128
Period size: 40 Copynumber: 2.2 Consensus size: 40
50467424 CGGAATATAA
*
50467434 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAAC
** *
50467474 CCGGATATCGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAAC
50467514 CCGGATATAA
1 CCGGATATAA
50467524 TTTCCAGCAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 42 0.98
41 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAAC
Found at i:50475545 original size:48 final size:48
Alignment explanation
Indices: 50475391--50475654 Score: 185
Period size: 49 Copynumber: 5.5 Consensus size: 48
50475381 GAGCCACTGG
* * * *
50475391 AAGACATTTCTAGGACATGTATCGGTCTCGAGATATACAAGCTAGTGT
1 AAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGT
* * * ** *
50475439 AAGACATGTCTGGGATATGCATCGGCATTGAGA-CGA-GAGCTAGTGT
1 AAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGT
* * * *
50475485 AAAATATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCTAGTCT
1 AAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGT
* * * * * *
50475533 AAGACCTGTCTGGGACATGACATCGACACT-GATAGATGA-GAGCCAGTGT
1 AAGACATGTCTGGGACATG-CATCGGC-CTCGAGATAT-ACAAGCTAGTGT
* * ** * ** *
50475582 AAGACCTGTCTAGGACACAACATCGGCCTCGATATATGGAAGTTAGTGT
1 AAGACATGTCTGGGACA-TGCATCGGCCTCGAGATATACAAGCTAGTGT
* *
50475631 AAGACCTGTCTGAGACATGGCATC
1 AAGACATGTCTGGGACAT-GCATC
50475655 AACTTTGATG
Statistics
Matches: 164, Mismatches: 43, Indels: 17
0.73 0.19 0.08
Matches are distributed among these distances:
46 36 0.22
47 2 0.01
48 52 0.32
49 71 0.43
50 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (48 bp):
AAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGT
Found at i:50475598 original size:49 final size:47
Alignment explanation
Indices: 50475532--50475697 Score: 138
Period size: 49 Copynumber: 3.4 Consensus size: 47
50475522 CAAGCTAGTC
50475532 TAAGACCTGTCTGGGACATGACATCGACACTGATAGATGAGAGCCAGTG
1 TAAGACCTGTCTGGGACATGACATCGAC-CTGATAGATG-GAGCCAGTG
* ** * * **
50475581 TAAGACCTGTCTAGGACACAACATCGGCCTCGATATATGGAAGTTAGTG
1 TAAGACCTGTCTGGGACATGACATCGACCT-GATAGATGG-AGCCAGTG
* * * * * *
50475630 TAAGACCTGTCTGAGACATGGCATCAACTTTGAT-G-TGTTAGCCAGAG
1 TAAGACCTGTCTGGGACATGACATCGAC-CTGATAGATG-GAGCCAGTG
50475677 TAAGACCATGTCTGGGACATG
1 TAAGACC-TGTCTGGGACATG
50475698 GCGTCGGCAT
Statistics
Matches: 91, Mismatches: 21, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
47 14 0.15
48 15 0.16
49 61 0.67
50 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.24
Consensus pattern (47 bp):
TAAGACCTGTCTGGGACATGACATCGACCTGATAGATGGAGCCAGTG
Found at i:50475946 original size:28 final size:28
Alignment explanation
Indices: 50475915--50475971 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
50475905 ACCATTTGTG
50475915 TATTTTACATGAAGTATGAAGTGTGAAT
1 TATTTTACATGAAGTATGAAGTGTGAAT
50475943 TATTTTACATGAAGTATGAAGTGTGAAT
1 TATTTTACATGAAGTATGAAGTGTGAAT
50475971 T
1 T
50475972 CAATCAACGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.04, G:0.21, T:0.40
Consensus pattern (28 bp):
TATTTTACATGAAGTATGAAGTGTGAAT
Found at i:50479505 original size:40 final size:40
Alignment explanation
Indices: 50479460--50479626 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
50479450 CGGAATATAA
50479460 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
50479500 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
50479540 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
50479580 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
50479619 CCGGATAT
1 CCGGATAT
50479627 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50479610 original size:80 final size:79
Alignment explanation
Indices: 50479460--50479626 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
50479450 CGGAATATAA
* *
50479460 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
50479525 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
50479540 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
50479602 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
50479619 CCGGATAT
1 CCGGATAT
50479627 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:50480474 original size:17 final size:19
Alignment explanation
Indices: 50480451--50480496 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
50480441 AAGAAGCATG
50480451 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
50480469 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
50480487 AATCATGCTC
1 AATCATGCTC
50480497 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:50487489 original size:40 final size:40
Alignment explanation
Indices: 50487444--50487610 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
50487434 CGGAATATAA
50487444 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
50487484 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
50487524 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
50487564 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
50487603 CCGGATAT
1 CCGGATAT
50487611 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50487594 original size:80 final size:79
Alignment explanation
Indices: 50487444--50487610 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
50487434 CGGAATATAA
* *
50487444 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
50487509 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
50487524 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
50487586 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
50487603 CCGGATAT
1 CCGGATAT
50487611 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:50488459 original size:17 final size:19
Alignment explanation
Indices: 50488436--50488481 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
50488426 AAGAAGCATG
50488436 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
50488454 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
50488472 AATCATGCTC
1 AATCATGCTC
50488482 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:50491702 original size:18 final size:18
Alignment explanation
Indices: 50491669--50491704 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
50491659 GAGATGGTTG
*
50491669 GAGTTGATAAAGGACTAC
1 GAGTTGATAAACGACTAC
*
50491687 GAGTTGATAATCGACTAC
1 GAGTTGATAAACGACTAC
50491705 CACCCAGGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (18 bp):
GAGTTGATAAACGACTAC
Found at i:50496952 original size:27 final size:27
Alignment explanation
Indices: 50496898--50497038 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 27
50496888 GTGACGAAGT
*
50496898 CACCAGATACAGATAT-TATGGCATAGC
1 CACCAGAT-CAGATATATGTGGCATAGC
* *
50496925 CACTAGAAT-AGATATATGTGGCAGAGC
1 CACCAG-ATCAGATATATGTGGCATAGC
50496952 CACCAGATCAGATA-ATTGTGGCATAGC
1 CACCAGATCAGATATA-TGTGGCATAGC
*
50496979 CACCAGGA-CAGATATATGTGGCAGAGC
1 CACCA-GATCAGATATATGTGGCATAGC
50497006 CACCAGATCAGATA-ATTGTGGCATAGC
1 CACCAGATCAGATATA-TGTGGCATAGC
50497033 CACCAG
1 CACCAG
50497039 GACGCTTCCT
Statistics
Matches: 99, Mismatches: 7, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
26 12 0.12
27 82 0.83
28 5 0.05
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGATCAGATATATGTGGCATAGC
Found at i:50497039 original size:54 final size:54
Alignment explanation
Indices: 50496898--50497041 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
50496888 GTGACGAAGT
* * * *
50496898 CACCAGATACAGAT-ATTATGGCATAGCCACTAGAATAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
50496952 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
50497006 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
50497042 GCTTCCTCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 80 0.94
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:50499060 original size:14 final size:14
Alignment explanation
Indices: 50499041--50499071 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
50499031 TCTCAATAGA
50499041 TTTATTCAAGATCC
1 TTTATTCAAGATCC
50499055 TTTATTCAAGATCC
1 TTTATTCAAGATCC
50499069 TTT
1 TTT
50499072 TTTTATTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.48
Consensus pattern (14 bp):
TTTATTCAAGATCC
Found at i:50500732 original size:15 final size:15
Alignment explanation
Indices: 50500709--50500761 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
50500699 AAGCAACAGA
*
50500709 CAAACAAACAAAAAG
1 CAAAAAAACAAAAAG
50500724 CAAAAAAACAAAAAG
1 CAAAAAAACAAAAAG
*
50500739 -AAGCAGAAAACAAAGAG
1 CAA--A-AAAACAAAAAG
50500756 CAAAAA
1 CAAAAA
50500762 CAAGAAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
14 2 0.06
15 16 0.50
16 2 0.06
17 10 0.31
18 2 0.06
ACGTcount: A:0.74, C:0.15, G:0.11, T:0.00
Consensus pattern (15 bp):
CAAAAAAACAAAAAG
Found at i:50506240 original size:19 final size:20
Alignment explanation
Indices: 50506213--50506254 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
50506203 TTTTTTTGCA
* *
50506213 TTCATTCATTTGCATTACAT
1 TTCATTCATGTGCATTAAAT
50506233 TTCA-TCATGTGCATTAAAT
1 TTCATTCATGTGCATTAAAT
50506252 TTC
1 TTC
50506255 GTGAAAAGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.48
Consensus pattern (20 bp):
TTCATTCATGTGCATTAAAT
Found at i:50517173 original size:66 final size:66
Alignment explanation
Indices: 50517087--50517252 Score: 228
Period size: 66 Copynumber: 2.5 Consensus size: 66
50517077 CATTCATACA
* *
50517087 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCACAGCATCCTAGTTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCACACCATCCTAATTATTTGA
*
50517152 T
66 C
* * * * *
50517153 TCATTCATAACACGTTTAATTAAGAGCATTTGATTCATTTCGATCATACCATCCTAATTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCACACCATCCTAATTATTTGA
50517218 C
66 C
* *
50517219 ACATTCAT--CACATCTAGTTAGGAGCATTTGATTC
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTC
50517253 GACCATAGCA
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
64 22 0.25
66 65 0.75
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (66 bp):
TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCACACCATCCTAATTATTTGA
C
Found at i:50518600 original size:19 final size:20
Alignment explanation
Indices: 50518567--50518608 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
50518557 AGCAACAGAC
50518567 AAACAAACAACAAGCAGAAA
1 AAACAAACAACAAGCAGAAA
*
50518587 AAACAAA-AAGAAGCAGAAA
1 AAACAAACAACAAGCAGAAA
50518606 AAA
1 AAA
50518609 AATAGCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.74, C:0.14, G:0.12, T:0.00
Consensus pattern (20 bp):
AAACAAACAACAAGCAGAAA
Found at i:50524046 original size:40 final size:40
Alignment explanation
Indices: 50524002--50524187 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
50523992 GCTACTAGTT
* * *
50524002 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
50524042 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
50524082 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
50524122 CAAATGCCTT-TGGATCTTAGTCCGGATATAGTCACTTAGCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
50524163 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50524188 CATCATTCGA
Statistics
Matches: 129, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.02
40 114 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:50526806 original size:27 final size:27
Alignment explanation
Indices: 50526768--50526887 Score: 195
Period size: 27 Copynumber: 4.4 Consensus size: 27
50526758 GTTGGGCTAG
*
50526768 AAGGTAAAATGACTATAATACCCTTGT
1 AAGGTAAAATGACTATAATACCCCTGT
50526795 AAGGTAAAATGACTATAATACCCCTGT
1 AAGGTAAAATGACTATAATACCCCTGT
* *
50526822 AGGGTCAAATGACTATAATACCCCTGT
1 AAGGTAAAATGACTATAATACCCCTGT
* *
50526849 AGGGTAAAATGACTGTAATACCCCTGT
1 AAGGTAAAATGACTATAATACCCCTGT
50526876 AAGGTAAAATGA
1 AAGGTAAAATGA
50526888 ATGATTTGCC
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (27 bp):
AAGGTAAAATGACTATAATACCCCTGT
Found at i:50527299 original size:33 final size:34
Alignment explanation
Indices: 50527250--50527342 Score: 95
Period size: 33 Copynumber: 2.8 Consensus size: 34
50527240 TTGCATACTG
* *
50527250 TACTGATTTTGTAATGGGCTTAGGCCC-CACTAA
1 TACTGATTCTGAAATGGGCTTAGGCCCACACTAA
*
50527283 TACTG-TTACTGAAATGGG-TTCAGGCCCACACTAT
1 TACTGATT-CTGAAATGGGCTT-AGGCCCACACTAA
* *
50527317 TTCTGATTCTGGAATGGGC-TAGGCCC
1 TACTGATTCTGAAATGGGCTTAGGCCC
50527343 TAACTGAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
32 4 0.08
33 25 0.50
34 19 0.38
35 2 0.04
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (34 bp):
TACTGATTCTGAAATGGGCTTAGGCCCACACTAA
Done.