Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 172 of 292
Found at i:51198699 original size:19 final size:18
Alignment explanation
Indices: 51198671--51198706 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
51198661 TGATAACATA
*
51198671 TTTTTTTTCTTTTTTTCT
1 TTTTTTTTCTCTTTTTCT
51198689 TTTTTTCTTCTCTTTTTC
1 TTTTTT-TTCTCTTTTTC
51198707 AAAATTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTTTTCTCTTTTTCT
Found at i:51198719 original size:19 final size:20
Alignment explanation
Indices: 51198691--51198731 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
51198681 TTTTTTCTTT
* *
51198691 TTTTCTTCTCTTTTTCAAAA
1 TTTTCTTCTCTCTTCCAAAA
51198711 TTTTC-TCTCTCTTCCAAAA
1 TTTTCTTCTCTCTTCCAAAA
51198730 TT
1 TT
51198732 CCCAAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.20, C:0.24, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTCTTCTCTCTTCCAAAA
Found at i:51206696 original size:2 final size:2
Alignment explanation
Indices: 51206689--51206716 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
51206679 TTCTAATTAA
51206689 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51206717 TACATCTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51207513 original size:18 final size:18
Alignment explanation
Indices: 51207487--51207522 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51207477 CAATTGATGT
51207487 AAGCAAGAATGAGTTATA
1 AAGCAAGAATGAGTTATA
* *
51207505 AAGCTAGAATGATTTATA
1 AAGCAAGAATGAGTTATA
51207523 GTATCGAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (18 bp):
AAGCAAGAATGAGTTATA
Found at i:51214009 original size:27 final size:27
Alignment explanation
Indices: 51213979--51214044 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 27
51213969 TTTAAAACCC
51213979 TAGGGGTACA-TCGGTAATTTTGCTCTT
1 TAGGGGTA-ATTCGGTAATTTTGCTCTT
51214006 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAA-TTCGGTAATTTTGCTCTT
51214034 TAGGGGTAATT
1 TAGGGGTAATT
51214045 TCGTGATCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
26 1 0.03
27 10 0.27
28 26 0.70
ACGTcount: A:0.20, C:0.11, G:0.27, T:0.42
Consensus pattern (27 bp):
TAGGGGTAATTCGGTAATTTTGCTCTT
Found at i:51214025 original size:28 final size:28
Alignment explanation
Indices: 51213989--51214047 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
51213979 TAGGGGTACA
51213989 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
51214017 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
51214045 TCG
1 TCG
51214048 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:51215696 original size:20 final size:20
Alignment explanation
Indices: 51215673--51215710 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
51215663 CACATCCAAA
*
51215673 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
51215693 TACAAAATATTAAAAATC
1 TACAAAATATTAAAAATC
51215711 GCGAATAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:51217244 original size:28 final size:28
Alignment explanation
Indices: 51217197--51217293 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
51217187 ATTTAAACCC
*
51217197 TAGGGGT-ATATT-GGTAATTTTGCTATT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
51217224 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
51217252 TAGGGGTAATTTCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
51217280 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
51217294 TGATCTACGC
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
27 9 0.14
28 56 0.86
ACGTcount: A:0.21, C:0.08, G:0.26, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:51217944 original size:27 final size:27
Alignment explanation
Indices: 51217914--51217975 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
51217904 GGGCAAAATG
51217914 GTAATTTTACCCTACAAGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCA
* *
51217941 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCTACAAGGGTATTTCA
51217968 GTAATTTT
1 GTAATTTT
51217976 TCAAACAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (27 bp):
GTAATTTTACCCTACAAGGGTATTTCA
Found at i:51218016 original size:54 final size:54
Alignment explanation
Indices: 51217958--51218081 Score: 185
Period size: 54 Copynumber: 2.3 Consensus size: 54
51217948 TACCCTACAG
* *
51217958 GGGTATTTTAGTAATTTTTCAAACAATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACAAGGGGTATTTTGGTAATTTTATAAACAAA
* * * *
51218012 GGGTATTTTACTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACAAGGGGTATTTTGGTAATTTTATAAACAAA
*
51218066 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
51218082 CTGTAAATTG
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACAAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:51218047 original size:81 final size:81
Alignment explanation
Indices: 51217929--51218081 Score: 204
Period size: 81 Copynumber: 1.9 Consensus size: 81
51217919 TTTACCCTAC
* **
51217929 AAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTT-TCAAA-CAATGGGTATT
1 AAGGGTATTTCACTAATTTTACCAAACAGGGGTATTTTAGTAATTTTAT-AAACCAA-GGGTATT
51217992 TTGGTAATTTTATAAACA
64 TTGGTAATTTTATAAACA
* * *
51218010 AAGGGTATTTTACTAATTTTA-CAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 AAGGGTATTTCACTAATTTTACCAAA-CAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTT
51218074 TGGTAATT
65 TGGTAATT
51218082 CTGTAAATTG
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
80 2 0.03
81 57 0.90
82 4 0.06
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTCACTAATTTTACCAAACAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTT
GGTAATTTTATAAACA
Found at i:51218088 original size:27 final size:27
Alignment explanation
Indices: 51217958--51218081 Score: 153
Period size: 27 Copynumber: 4.6 Consensus size: 27
51217948 TACCCTACAG
*
51217958 GGGTATTTTAGTAATTTT-TCAAA-CAA
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
51217984 TGGGTATTTTGGTAATTTTATAAACAAA
1 -GGGTATTTTGGTAATTTTATAAACCAA
** * *
51218012 GGGTATTTTACTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
51218039 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
51218066 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
51218082 CTGTAAATTG
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
27 79 0.96
28 3 0.04
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:51218095 original size:27 final size:27
Alignment explanation
Indices: 51218065--51218135 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
51218055 TTATAAACCA
* *
51218065 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
**
51218092 AGGGTAAAATGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
51218119 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
51218136 TTACAAGTCG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.06
27 34 0.94
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.38
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:51222950 original size:37 final size:37
Alignment explanation
Indices: 51222900--51222970 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
51222890 AGAATTACTA
51222900 CTAATATGTATGTTTTTGTTTTGTTTTTCTTTTTGAT
1 CTAATATGTATGTTTTTGTTTTGTTTTTCTTTTTGAT
51222937 CTAATATGTATGTTTTTGTTTTGTTTTTCTTTTT
1 CTAATATGTATGTTTTTGTTTTGTTTTTCTTTTT
51222971 TAAGAACAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.13, C:0.06, G:0.13, T:0.69
Consensus pattern (37 bp):
CTAATATGTATGTTTTTGTTTTGTTTTTCTTTTTGAT
Found at i:51228258 original size:40 final size:39
Alignment explanation
Indices: 51228093--51228276 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
51228083 AAATTGAATG
* * *
51228093 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
51228133 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
51228173 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
51228213 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
51228252 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
51228277 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:51228301 original size:80 final size:81
Alignment explanation
Indices: 51228133--51228321 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
51228123 GCTGGAAATT
* * * *
51228133 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
51228198 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
51228214 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
51228277 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
51228293 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
51228322 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:51236378 original size:40 final size:39
Alignment explanation
Indices: 51236213--51236396 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
51236203 AAATTGAATG
* * *
51236213 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
51236253 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
51236293 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
51236333 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
51236372 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
51236397 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:51236421 original size:80 final size:81
Alignment explanation
Indices: 51236253--51236441 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
51236243 GCTGGAAATT
* * * *
51236253 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
51236318 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
51236334 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
51236397 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
51236413 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
51236442 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:51241895 original size:40 final size:39
Alignment explanation
Indices: 51241730--51241913 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
51241720 AAATTGAATG
* * *
51241730 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
51241770 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
51241810 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
51241850 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
51241889 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
51241914 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:51241938 original size:80 final size:81
Alignment explanation
Indices: 51241770--51241958 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
51241760 GCTGGAAATT
* * * *
51241770 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
51241835 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
51241851 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
51241914 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
51241930 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
51241959 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:51249859 original size:17 final size:20
Alignment explanation
Indices: 51249837--51249876 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
51249827 ATCAACCATG
51249837 CATATT-TAAA-CA-CACAA
1 CATATTATAAATCATCACAA
51249854 CATATTATAAATCATCACAA
1 CATATTATAAATCATCACAA
51249874 CAT
1 CAT
51249877 TCTTGAGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 4 0.20
19 2 0.10
20 8 0.40
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.28
Consensus pattern (20 bp):
CATATTATAAATCATCACAA
Found at i:51250223 original size:48 final size:48
Alignment explanation
Indices: 51250147--51250525 Score: 340
Period size: 48 Copynumber: 7.9 Consensus size: 48
51250137 GAGGGTAAGT
* * * *
51250147 TGCCAATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA
* * * * *
51250195 GGCCGATGCCATGTCCCAGACATGGTCTTGCACTAGCTCTCATCTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA
* * * * *
51250243 TGCTGATGTCATGTCCTAGACATGGTCTTACACTAGCTCTCATCT-GAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCG-A
* * * *
51250291 TGCGGATGCCATCTCCCAGACATGGTCTTACACTGGCTCTCATAAT-G-
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCGA
* * * *
51250338 TGGCCGACGCCATGTCCTAGACATGGTCTTACACTAGCACACA-ATCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA
* * * * *
51250386 TGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAC-A
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA
* * * * * * *
51250433 TTGTCGATGCCATGTTCCAAACATGGTCTTACAATGGCACACGAAAT-G-
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAC-ATATCGA
*
51250481 TGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
51250526 ACACCCAAAT
Statistics
Matches: 273, Mismatches: 48, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
46 2 0.01
47 39 0.14
48 228 0.84
49 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA
Found at i:51250463 original size:143 final size:144
Alignment explanation
Indices: 51250152--51250525 Score: 479
Period size: 143 Copynumber: 2.6 Consensus size: 144
51250142 TAAGTTGCCA
* *
51250152 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACAT-GTCGAGGCCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAT-GTGGCCGATGCCATGTCCCAGAC
* * * * * * *
51250216 ATGGTCTTGCACTAGCTCTCATCTCAATGCTGATGTCATGTCCTAGACATGGTCTTACACTAGCT
65 ATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTAGCT
***
51250281 CTCATCTGAATGCGG
130 CTCATAACAATGCGG
* * * * *
51250296 ATGCCATCTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGACGCCATGTCCTAGACA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGTGGCCGATGCCATGTCCCAGACA
*
51250361 TGGTCTTACACTAGCACACA-ATCAATGCCGATGCCATGTTCC-AAACATGGTCTTACACTGGCT
66 TGGTCTTACACTAGCACACATATCAATGCCGATGCCATG-TCCTAAACATGGTCTTACACTAGCT
*
51250424 CTCATAACATTGTC-G
130 CTCATAACAATG-CGG
* * *
51250439 ATGCCATGTTCCAAACATGGTCTTACAATGGCACACGA-AATGTGGCCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCAC-ATAATGTGGCCGATGCCATGTCCCAGAC
51250503 ATGGTCTTACACTAGCACACATA
65 ATGGTCTTACACTAGCACACATA
51250526 ACACCCAAAT
Statistics
Matches: 198, Mismatches: 27, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
143 118 0.60
144 79 0.40
145 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (144 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGTGGCCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTAGCTC
TCATAACAATGCGG
Found at i:51254079 original size:27 final size:27
Alignment explanation
Indices: 51254049--51254100 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
51254039 TTCTTGCGAT
* *
51254049 ATAATATGAAAGAAAAGCCTTTGTGCC
1 ATAATACGAAAGAAAAGACTTTGTGCC
51254076 ATAATACGAAAGAAAAGACTTTGTG
1 ATAATACGAAAGAAAAGACTTTGTG
51254101 GTGTTATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (27 bp):
ATAATACGAAAGAAAAGACTTTGTGCC
Found at i:51265515 original size:13 final size:13
Alignment explanation
Indices: 51265499--51265523 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51265489 AAACTTTTCT
51265499 AAATATATTTTAG
1 AAATATATTTTAG
51265512 AAATATATTTTA
1 AAATATATTTTA
51265524 TTCATACTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
AAATATATTTTAG
Found at i:51275132 original size:52 final size:51
Alignment explanation
Indices: 51275056--51275166 Score: 168
Period size: 52 Copynumber: 2.1 Consensus size: 51
51275046 AGTGTAATTG
* * *
51275056 TTTTTCATGAGTAGATCTTGTGTTCGAATGTGTGACCATACCTTTTTTTCTT
1 TTTTTCATGAGCAGATCTCGTGTTCGAATGTGCGACCATACC-TTTTTTCTT
*
51275108 TTTTTCATGAGCAGATCTCGTGTTCGAATGTGCGACCATATCTTTTTTCTT
1 TTTTTCATGAGCAGATCTCGTGTTCGAATGTGCGACCATACCTTTTTTCTT
51275159 TCTTTTCA
1 T-TTTTCA
51275167 AATATGTTAA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
51 10 0.19
52 44 0.81
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49
Consensus pattern (51 bp):
TTTTTCATGAGCAGATCTCGTGTTCGAATGTGCGACCATACCTTTTTTCTT
Found at i:51275566 original size:13 final size:13
Alignment explanation
Indices: 51275548--51275572 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51275538 ATGTAGTCTG
51275548 TATAAGTATTTTC
1 TATAAGTATTTTC
51275561 TATAAGTATTTT
1 TATAAGTATTTT
51275573 ATGTGTGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (13 bp):
TATAAGTATTTTC
Found at i:51276396 original size:23 final size:23
Alignment explanation
Indices: 51276369--51276414 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
51276359 AGCATCTCGA
* *
51276369 ACTTTTATTTTATTTTAAAAATT
1 ACTTTTACTTTAATTTAAAAATT
*
51276392 ACTTTTACTTTAATTTAATAATT
1 ACTTTTACTTTAATTTAAAAATT
51276415 TCTATTTGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.59
Consensus pattern (23 bp):
ACTTTTACTTTAATTTAAAAATT
Found at i:51278846 original size:18 final size:18
Alignment explanation
Indices: 51278823--51278864 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
51278813 GAAATTGAGG
51278823 TTCAAAACATGAGTATTC
1 TTCAAAACATGAGTATTC
51278841 TTCAAAACATGAGTATTC
1 TTCAAAACATGAGTATTC
51278859 TTCAAA
1 TTCAAA
51278865 TGTGCTCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (18 bp):
TTCAAAACATGAGTATTC
Found at i:51280881 original size:27 final size:26
Alignment explanation
Indices: 51280843--51280954 Score: 102
Period size: 27 Copynumber: 4.2 Consensus size: 26
51280833 GAGGAAGCGT
*
51280843 TCTGGTGGCTCTGCCATAAATATCT-AA
1 TCTGGTGGCTCT-CCA-AAATATCTGTA
* *
51280870 TCTGGTGGCTCTACACAAATATCTGTT
1 TCTGGTGGCTCTCCA-AAATATCTGTA
*
51280897 TCTGGTGGCTCTACCACAATATCTGTA
1 TCTGGTGGCTCT-CCAAAATATCTGTA
* * *
51280924 TCTGGTGACTCTATCACAATATCTGT-
1 TCTGGTGGCTCT-CCAAAATATCTGTA
51280950 TCTGG
1 TCTGG
51280955 AATCCATGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 15 0.20
27 57 0.77
28 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (26 bp):
TCTGGTGGCTCTCCAAAATATCTGTA
Found at i:51280927 original size:54 final size:53
Alignment explanation
Indices: 51280841--51280954 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 53
51280831 TGGAGGAAGC
* *
51280841 GTTCTGGTGGCTCTGCCATAAATATCTAATCTGGTGGCTCTA-CACAAATATCT
1 GTTCTGGTGGCTCTACCATAAATATCTAATCTGGTGACTCTATCAC-AATATCT
* *
51280894 GTTTCTGGTGGCTCTACCA-CAATATCTGTATCTGGTGACTCTATCACAATATCT
1 G-TTCTGGTGGCTCTACCATAAATATCT-AATCTGGTGACTCTATCACAATATCT
51280948 GTTCTGG
1 GTTCTGG
51280955 AATCCATGAT
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
53 14 0.26
54 37 0.69
55 3 0.06
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (53 bp):
GTTCTGGTGGCTCTACCATAAATATCTAATCTGGTGACTCTATCACAATATCT
Found at i:51284972 original size:29 final size:29
Alignment explanation
Indices: 51284948--51285040 Score: 177
Period size: 29 Copynumber: 3.2 Consensus size: 29
51284938 TCGCACACCC
*
51284948 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51284977 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51285006 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51285035 AGTGCC
1 AGTGCC
51285041 TATCTCGTCA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:51284973 original size:58 final size:58
Alignment explanation
Indices: 51284911--51285040 Score: 163
Period size: 58 Copynumber: 2.2 Consensus size: 58
51284901 ATTTAAGCCC
* * * * *
51284911 GCACACATAGTGTCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
51284969 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
51285027 GCACACTTAGTGCC
1 GCACACTTAGTGCC
51285041 TATCTCGTCA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 61 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:51292109 original size:2 final size:2
Alignment explanation
Indices: 51292102--51292126 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
51292092 TCGATCGGAG
51292102 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
51292127 GAGTACGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51292251 original size:29 final size:29
Alignment explanation
Indices: 51292227--51292349 Score: 237
Period size: 29 Copynumber: 4.2 Consensus size: 29
51292217 TCGCACACCC
*
51292227 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51292256 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51292285 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51292314 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51292343 AGTGCCA
1 AGTGCCA
51292350 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 93 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:51292252 original size:58 final size:58
Alignment explanation
Indices: 51292190--51292349 Score: 196
Period size: 58 Copynumber: 2.8 Consensus size: 58
51292180 ATTTAAGCCC
* * * *
51292190 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
51292248 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
* * **
51292306 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCA
51292350 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
58 92 0.99
59 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:51292281 original size:87 final size:87
Alignment explanation
Indices: 51292190--51292349 Score: 232
Period size: 87 Copynumber: 1.8 Consensus size: 87
51292180 ATTTAAGCCC
* * *
51292190 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCATGCACAC
1 GCACACATAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCATGCACAC
51292254 TTAGTGCCATATATTTCCAGCAT
65 TTAGTGCCATATATTTCCAGCAT
* * * **
51292277 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
1 GCACACATAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATGCACACT
51292342 TAGTGCCA
66 TAGTGCCA
51292350 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
87 63 0.98
88 1 0.02
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (87 bp):
GCACACATAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATGCACACT
TAGTGCCATATATTTCCAGCAT
Found at i:51294272 original size:17 final size:17
Alignment explanation
Indices: 51294252--51294285 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
51294242 TTTAAAGAAG
51294252 AATAAATATTGTAAAAA
1 AATAAATATTGTAAAAA
* *
51294269 AATAGATGTTGTAAAAA
1 AATAAATATTGTAAAAA
51294286 TCTTAGTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (17 bp):
AATAAATATTGTAAAAA
Found at i:51298975 original size:31 final size:31
Alignment explanation
Indices: 51298903--51299017 Score: 164
Period size: 31 Copynumber: 3.8 Consensus size: 31
51298893 TTAGTCTTGA
* *
51298903 CATAT-ACTGGGCTGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
51298933 -ATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
51298963 CATATCATTGGGCCGAAACCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
51298994 CATATCACTGCGCCGAAG-CTTTTC
1 CATATCACTGGGCCGAAGCCTTTTC
51299018 CTGTAAACGG
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
29 4 0.05
30 29 0.38
31 43 0.57
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:51299087 original size:42 final size:42
Alignment explanation
Indices: 51299040--51299173 Score: 250
Period size: 42 Copynumber: 3.2 Consensus size: 42
51299030 TAGCCTTTAG
*
51299040 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
51299082 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
51299124 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
51299166 GCCCATTT
1 GCCCATTT
51299174 GGGGAGACCA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:51299341 original size:24 final size:25
Alignment explanation
Indices: 51299314--51299364 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
51299304 GCCTAGCCTC
51299314 TTCTAAT-AACTAGGGCAAAGCCCT
1 TTCTAATAAACTAGGGCAAAGCCCT
*
51299338 TTCTGATAAACTAGGGCAAAGCCCT
1 TTCTAATAAACTAGGGCAAAGCCCT
51299363 TT
1 TT
51299365 TCGGTAAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (25 bp):
TTCTAATAAACTAGGGCAAAGCCCT
Found at i:51299349 original size:25 final size:25
Alignment explanation
Indices: 51299321--51299390 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
51299311 CTCTTCTAAT
51299321 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTAGGGCAAAGCCCTTTTC-GATA
*
51299346 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
51299371 AACTAGGGCAGATCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
51299391 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:51300348 original size:27 final size:27
Alignment explanation
Indices: 51300318--51300547 Score: 151
Period size: 27 Copynumber: 8.4 Consensus size: 27
51300308 GTAAATCTAC
*
51300318 AAACTAAGGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTCGGTAATTTTGT
* * **
51300345 AAACCAATGGTATTTCTATAATTTT-T
1 AAACTAAGGGTATTTCGGTAATTTTGT
* *
51300371 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAACT-AAGGGTATTTCGGTAATTTTGT
* * * **
51300401 AAA-TCAGGAGTATTTTGGTGATTTTAC
1 AAACTAAGG-GTATTTCGGTAATTTTGT
* * ***
51300428 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACTAAGGGTATTTCGGTAATTTTGT
* **
51300455 AAACT-AGTGGTATTTTGGTAATTTTAC
1 AAACTAAG-GGTATTTCGGTAATTTTGT
* *
51300482 AAACTAGGGGTATTTTGGTAATTTTGT
1 AAACTAAGGGTATTTCGGTAATTTTGT
* **
51300509 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACTAAGGGTATTTCGGTAATTTTGT
* *
51300536 AAATTGAGGGTA
1 AAACTAAGGGTA
51300548 AAACGGTAAT
Statistics
Matches: 165, Mismatches: 30, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
26 6 0.04
27 129 0.78
28 11 0.07
29 18 0.11
30 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
AAACTAAGGGTATTTCGGTAATTTTGT
Found at i:51300521 original size:54 final size:54
Alignment explanation
Indices: 51300295--51300533 Score: 223
Period size: 54 Copynumber: 4.4 Consensus size: 54
51300285 TCTCATCCTA
* * * * *
51300295 CAAGGGTGTGTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC
* * * * * *
51300349 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAACT-AAGGGTATTTCGGTAATTTTGTAAAC
* * * ***
51300405 C-AGGAGTATTTTGGTGATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGG-GTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC
* * *
51300458 CTAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC
*
51300513 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
51300534 GTAAATTGAG
Statistics
Matches: 147, Mismatches: 30, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
53 1 0.01
54 89 0.61
55 24 0.16
56 33 0.22
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC
Found at i:51300556 original size:27 final size:27
Alignment explanation
Indices: 51300526--51300709 Score: 269
Period size: 27 Copynumber: 6.8 Consensus size: 27
51300516 GGGTATTTTA
* *
51300526 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
*
51300553 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
* * *
51300580 ATAATTCTATAAATTGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
* * * *
51300607 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAACG
51300634 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
*
51300661 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
51300688 GTAATTTTATAAATCGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
51300710 CTTTGGTAAT
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAACG
Found at i:51300717 original size:27 final size:27
Alignment explanation
Indices: 51300526--51300733 Score: 236
Period size: 27 Copynumber: 7.7 Consensus size: 27
51300516 GGGTATTTTA
* * *
51300526 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
51300553 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * * *
51300580 ATAATTCTATAAATTGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
51300607 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
*
51300634 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
51300661 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
***
51300688 GTAATTTTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
51300715 GTAATTTTACAAATTGAGG
1 GTAATTTTATAAATCGAGG
51300734 ACATTTTAGT
Statistics
Matches: 163, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 163 1.00
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAATG
Found at i:51300717 original size:81 final size:81
Alignment explanation
Indices: 51300535--51300733 Score: 263
Period size: 81 Copynumber: 2.5 Consensus size: 81
51300525 AGTAATTTTG
* * * *
51300535 TAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATTGAGGG
1 TAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGG
51300600 TAAAACGATAATTCTA
66 TAAAACGATAATTCTA
* * * *
51300616 TAAATTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGG
1 TAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGG
* *
51300681 TAAAACGGTAATTTTA
66 TAAAACGATAATTCTA
*** * *
51300697 TAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGG
1 TAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGG
51300734 ACATTTTAGT
Statistics
Matches: 104, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 104 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (81 bp):
TAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGG
TAAAACGATAATTCTA
Found at i:51307792 original size:20 final size:20
Alignment explanation
Indices: 51307763--51307800 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51307753 AATAGAAAAA
*
51307763 AAAAAAAGAAAGCCAAAGTG
1 AAAAAAAGAAAGACAAAGTG
*
51307783 AAAAACAGAAAGACAAAG
1 AAAAAAAGAAAGACAAAG
51307801 AAAGAAAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.11, G:0.18, T:0.03
Consensus pattern (20 bp):
AAAAAAAGAAAGACAAAGTG
Found at i:51315364 original size:23 final size:23
Alignment explanation
Indices: 51315337--51315382 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
51315327 TGATATAATC
51315337 TTACATTATGTTCATTATAAATA
1 TTACATTATGTTCATTATAAATA
51315360 TTACATTATGTTCATTATAAATA
1 TTACATTATGTTCATTATAAATA
51315383 GGTAAGGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (23 bp):
TTACATTATGTTCATTATAAATA
Found at i:51316817 original size:42 final size:42
Alignment explanation
Indices: 51316708--51316872 Score: 154
Period size: 43 Copynumber: 3.9 Consensus size: 42
51316698 AGCTCGTACA
** * * *
51316708 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATAT-G
* *
51316751 ATGCCACTGTCCCAGACAAGGTCTTACACGAAATCAAATATG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATG
* * *
51316793 ATTCCAATGTCCCAAACATGGTCTTACATGTAAATCTCAAATCA--
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAA--TCAAAT-ATG
* **
51316837 ATGCCAACGTCCCAGATGTGGTCTTACACGAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
51316873 CATTTCAAAA
Statistics
Matches: 100, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
41 3 0.03
42 26 0.26
43 40 0.40
44 24 0.24
45 6 0.06
46 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATG
Found at i:51319613 original size:46 final size:44
Alignment explanation
Indices: 51319495--51319620 Score: 135
Period size: 46 Copynumber: 2.7 Consensus size: 44
51319485 CACATTATGA
** *
51319495 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCATTGAGAC
1 GAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCCGCATCGAGAC
* * *
51319541 GAGCGCTAGTGTAAGACATGTCTGGGACATGCATCCGCCTCGAGAT
1 GAGC-C-AGTGTAAGACATGTTTGGGACATGCATCCGCATCGAGAC
*
51319587 GTAAGCCAGTGAAAGACATGTTTGGGACATGCAT
1 G--AGCCAGTGTAAGACATGTTTGGGACATGCAT
51319621 TAGCTATGAA
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
46 41 0.60
47 15 0.22
48 12 0.18
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTTTGGGACATGCATCCGCATCGAGAC
Found at i:51324016 original size:124 final size:124
Alignment explanation
Indices: 51323794--51324018 Score: 319
Period size: 124 Copynumber: 1.8 Consensus size: 124
51323784 GAATTATGTG
* * * * * *
51323794 AAATGAAATATGGATGTGCATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTGCAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
51323859 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
51323918 AAATGAAATATGAATGT-CTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCG
1 AAATGAAATATGAATGTGC-AATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCG
*
51323982 GGCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
65 GGCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
51324019 CTGGGTTAAG
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
123 4 0.05
124 84 0.95
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTGCAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:51324140 original size:40 final size:40
Alignment explanation
Indices: 51324025--51324141 Score: 139
Period size: 40 Copynumber: 2.9 Consensus size: 40
51324015 ATATCTGGGT
* * * * *
51324025 TAAGACCCGAAGGCAATT-GTGCTAGCGGCTACATCCGGGC
1 TAAGACCCGAAGGC-ATTCGTGCGAGTGGTTATATCCGAGC
* *
51324065 TAAGACCCGAAGGCATTCGTGCGAGTCGTTCTATCCGAGC
1 TAAGACCCGAAGGCATTCGTGCGAGTGGTTATATCCGAGC
51324105 TAAGACCCGAAGGCATTCGTGC-ACGTGGTTATATCCG
1 TAAGACCCGAAGGCATTCGTGCGA-GTGGTTATATCCG
51324142 GTTGTATTCC
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 4 0.06
40 62 0.94
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.21
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTCGTGCGAGTGGTTATATCCGAGC
Found at i:51332108 original size:124 final size:124
Alignment explanation
Indices: 51331886--51332110 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
51331876 GAATTATGTG
* * * * * * *
51331886 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
51331951 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
51332010 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
51332075 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
51332111 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:51332231 original size:39 final size:40
Alignment explanation
Indices: 51332105--51332233 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
51332095 TTGCTGGAAA
* * *
51332105 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
51332145 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
51332185 TTCTATCCGGGCTAAGA-CCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
51332224 TTATATCCGG
1 TTATATCCGG
51332234 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 31 0.41
40 44 0.58
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:51340758 original size:40 final size:40
Alignment explanation
Indices: 51340714--51340806 Score: 177
Period size: 40 Copynumber: 2.3 Consensus size: 40
51340704 TAATTCTAAC
*
51340714 AGCCCGGATTTATCAACTCGCACGAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
51340754 AGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
51340794 AGCCCGGATATAT
1 AGCCCGGATATAT
51340807 TTCCAATGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.26
Consensus pattern (40 bp):
AGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
Found at i:51348842 original size:40 final size:40
Alignment explanation
Indices: 51348734--51348943 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
51348724 CGGGATTTAA
* * * * *
51348734 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
51348774 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51348814 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51348854 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51348894 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51348934 CCGGATATAT
1 CCGGATATAT
51348944 TTCAATGTTC
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:51354269 original size:29 final size:29
Alignment explanation
Indices: 51354219--51354288 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
51354209 AATGGTGGAA
* ** **
51354219 ACCATCCTTTTTCATATTCGATGGTTGTC
1 ACCATCCATTTTCATAGCCGATGGCCGTC
*
51354248 ACCATCCCTTTTCATAGCCGATGGCCGTC
1 ACCATCCATTTTCATAGCCGATGGCCGTC
51354277 ACCATCCATTTT
1 ACCATCCATTTT
51354289 TATAATCGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.19, C:0.31, G:0.13, T:0.37
Consensus pattern (29 bp):
ACCATCCATTTTCATAGCCGATGGCCGTC
Found at i:51354298 original size:29 final size:28
Alignment explanation
Indices: 51354219--51354303 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 28
51354209 AATGGTGGAA
* **
51354219 ACCATCCTTTTTCATATTCGATGGTTGTC
1 ACCATCCTTTTT-ATAATCGATGGCCGTC
* **
51354248 ACCATCCCTTTTCATAGCCGATGGCCGTC
1 ACCAT-CCTTTTTATAATCGATGGCCGTC
*
51354277 ACCATCCATTTTTATAATCGATAGCCG
1 ACCATCC-TTTTTATAATCGATGGCCG
51354304 AAGCTATCCC
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
28 2 0.04
29 37 0.82
30 6 0.13
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.35
Consensus pattern (28 bp):
ACCATCCTTTTTATAATCGATGGCCGTC
Found at i:51358215 original size:14 final size:14
Alignment explanation
Indices: 51358178--51358218 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
51358168 TGGCATTTTG
*
51358178 ATAAGCGCCGC-AA
1 ATAAACGCCGCTAA
*
51358191 A-AAATGCCGCTAA
1 ATAAACGCCGCTAA
51358204 ATAAACGCCGCTAA
1 ATAAACGCCGCTAA
51358218 A
1 A
51358219 GAACATGACT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 7 0.30
13 4 0.17
14 12 0.52
ACGTcount: A:0.44, C:0.27, G:0.17, T:0.12
Consensus pattern (14 bp):
ATAAACGCCGCTAA
Found at i:51358265 original size:43 final size:43
Alignment explanation
Indices: 51358204--51358398 Score: 225
Period size: 43 Copynumber: 4.6 Consensus size: 43
51358194 ATGCCGCTAA
* *
51358204 ATAAACGCCGCTAAAGAACATGACTTTTAGCAACACTTTTCCC
1 ATAAACGCCGCTAAAGAACATGACCTTTAGCGACACTTTTCCC
* *
51358247 ATAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCCT
1 ATAAACGCCGCTAAAGAACATGACCTTTAGCGACACTTTTCCC
* * * *
51358290 A-AAATTGCTGCTAAAGAACATGACCTTTAGCGGCGC-TTTCTCC
1 ATAAA-CGCCGCTAAAGAACATGACCTTTAGCGACACTTTTC-CC
* * * *
51358333 ATAAACGCCGCTAAATAACTTGACCTTTAGGGGCA-TTTTCCC
1 ATAAACGCCGCTAAAGAACATGACCTTTAGCGACACTTTTCCC
* *
51358375 AAAAATGCCGCTAAAGAACATGAC
1 ATAAACGCCGCTAAAGAACATGAC
51358399 TCTTAGTGCT
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
42 29 0.22
43 98 0.75
44 3 0.02
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
ATAAACGCCGCTAAAGAACATGACCTTTAGCGACACTTTTCCC
Found at i:51358358 original size:86 final size:85
Alignment explanation
Indices: 51358210--51358461 Score: 264
Period size: 86 Copynumber: 3.0 Consensus size: 85
51358200 CTAAATAAAC
* * * *
51358210 GCCGCTAAAGAACATGACTTTTAGCAACACTTT-TCCCATAAACGCCGCTAAAGAACATGACCTT
1 GCCGCTAAAGAACATGACCTTTAGC-GCGCTTTCT-CCATAAACGCCGCTAAAGAACTTGACCTT
* *
51358274 TAGCGACGCTTTTCCTAAAATT
64 TAGCGACGCTTTTCCAAAAAAT
* *
51358296 GCTGCTAAAGAACATGACCTTTAGCGGCGCTTTCTCCATAAACGCCGCTAAATAACTTGACCTTT
1 GCCGCTAAAGAACATGACCTTTAGC-GCGCTTTCTCCATAAACGCCGCTAAAGAACTTGACCTTT
* *
51358361 AG-G-GGCATTTTCCCAAAAAT
65 AGCGACGC-TTTTCCAAAAAAT
* * * * *
51358381 GCCGCTAAAGAACATGA-CTCTTA--GTGCTCTCTCCACAAACGCTGCTAAAGAACTTGACTTTT
1 GCCGCTAAAGAACATGACCT-TTAGCGCGCTTTCTCCATAAACGCCGCTAAAGAACTTGACCTTT
* *
51358443 AGCAACGCCTTTCCAAAAA
65 AGCGACGCTTTTCCAAAAA
51358462 CACCATTAAA
Statistics
Matches: 140, Mismatches: 21, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
82 35 0.25
83 9 0.06
84 6 0.04
85 31 0.22
86 58 0.41
87 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (85 bp):
GCCGCTAAAGAACATGACCTTTAGCGCGCTTTCTCCATAAACGCCGCTAAAGAACTTGACCTTTA
GCGACGCTTTTCCAAAAAAT
Found at i:51358459 original size:82 final size:82
Alignment explanation
Indices: 51358249--51358461 Score: 225
Period size: 82 Copynumber: 2.5 Consensus size: 82
51358239 CTTTTCCCAT
* * *
51358249 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCCTAAAATTGCTGCTAAAGAACATGAC
1 AAACGCCGCTAAAGAACTTGACCTTTAGC-ACGCTTTTCC-AAAAATGCCGCTAAAGAACATGAC
* *
51358314 CTTTAGCGGCGCTTTCTCCAT
64 CTTTA--GGCGCTCTCTCCAC
* **
51358335 AAACGCCGCTAAATAACTTGACCTTTAG-GGGCATTTTCCCAAAAATGCCGCTAAAGAACATGA-
1 AAACGCCGCTAAAGAACTTGACCTTTAGCACGC-TTTT-CCAAAAATGCCGCTAAAGAACATGAC
*
51358398 CTCTTA-GTGCTCTCTCCAC
64 CT-TTAGGCGCTCTCTCCAC
* * *
51358417 AAACGCTGCTAAAGAACTTGACTTTTAGCAACGCCTTTCCAAAAA
1 AAACGCCGCTAAAGAACTTGACCTTTAGC-ACGCTTTTCCAAAAA
51358462 CACCATTAAA
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
82 42 0.39
83 3 0.03
84 6 0.06
85 28 0.26
86 28 0.26
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (82 bp):
AAACGCCGCTAAAGAACTTGACCTTTAGCACGCTTTTCCAAAAATGCCGCTAAAGAACATGACCT
TTAGGCGCTCTCTCCAC
Found at i:51359178 original size:23 final size:23
Alignment explanation
Indices: 51359147--51359485 Score: 135
Period size: 23 Copynumber: 14.7 Consensus size: 23
51359137 TTTCAGCACC
* ***
51359147 TAAACACTTCAATTTGCTGTACT
1 TAAAAACTTCAATTTGCAACACT
* *
51359170 TAAAAACTTCAATTTACAACATT
1 TAAAAACTTCAATTTGCAACACT
*
51359193 TAAAAACTTCAATTTGCAGCACT
1 TAAAAACTTCAATTTGCAACACT
* * * ** * *
51359216 TTAACACCTCAATTTATAGCATT
1 TAAAAACTTCAATTTGCAACACT
** *
51359239 TAAACGCTTCAATTTGCAGCACT
1 TAAAAACTTCAATTTGCAACACT
* * ** * *
51359262 TTAACACTTCAATTTATAGCATT
1 TAAAAACTTCAATTTGCAACACT
* *
51359285 TAAACACTTCAATTTGCAGCACT
1 TAAAAACTTCAATTTGCAACACT
* * ** *
51359308 TTAACA-TCTCAATTAACAACATT
1 TAAAAACT-TCAATTTGCAACACT
* ** * * *
51359331 TATACTCCTCAATTTCCAGCAAC-
1 TAAAAACTTCAATTTGCAAC-ACT
* * **
51359354 TAAACACTTCAATTTGTAGTACT
1 TAAAAACTTCAATTTGCAACACT
* * *
51359377 TAAACACTTCAATTTACAACATT
1 TAAAAACTTCAATTTGCAACACT
* *
51359400 TAAACACTTCAATTTACAACA-T
1 TAAAAACTTCAATTTGCAACACT
* * * *
51359422 TCAAACACTTCACTTTGTAGCACT
1 T-AAAAACTTCAATTTGCAACACT
* * * *
51359446 TTAACACTTCAATTTACAACATT
1 TAAAAACTTCAATTTGCAACACT
**
51359469 TAAACGCTTCAATTTGC
1 TAAAAACTTCAATTTGC
51359486 TGCACTTTAA
Statistics
Matches: 243, Mismatches: 67, Indels: 12
0.75 0.21 0.04
Matches are distributed among these distances:
22 5 0.02
23 235 0.97
24 3 0.01
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (23 bp):
TAAAAACTTCAATTTGCAACACT
Found at i:51359202 original size:46 final size:46
Alignment explanation
Indices: 51359147--51359528 Score: 412
Period size: 46 Copynumber: 8.3 Consensus size: 46
51359137 TTTCAGCACC
* * * *
51359147 TAAACACTTCAATTTGCTGTACTTAAAAACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
* * * *
51359193 TAAAAACTTCAATTTGCAGCACTTTAACACCTCAATTTATAGCATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
* * *
51359239 TAAACGCTTCAATTTGCAGCACTTTAACACTTCAATTTATAGCATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
*
51359285 TAAACACTTCAATTTGCAGCACTTTAACA-TCTCAATTAACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAACATT
* * * * * ** ** *
51359331 TATACTCCTCAATTTCCAGCAAC-TAAACACTTCAATTTGTAGTACT
1 TAAACACTTCAATTTGCAGC-ACTTTAACACTTCAATTTACAACATT
* *
51359377 TAAACACTTCAATTTACAACA-TTTAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTACAACATT
* * *
51359423 CAAACACTTCACTTTGTAGCACTTTAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
* * *
51359469 TAAACGCTTCAATTTGCTGCACTTTAACA-TCTCAATTAACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAACATT
* *
51359515 TATACACCTCAATT
1 TAAACACTTCAATT
51359529 ACAGCGATAA
Statistics
Matches: 278, Mismatches: 51, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
45 4 0.01
46 268 0.96
47 6 0.02
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (46 bp):
TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
Found at i:51359214 original size:69 final size:69
Alignment explanation
Indices: 51359135--51359505 Score: 378
Period size: 69 Copynumber: 5.4 Consensus size: 69
51359125 ACATAAACTA
* * * *
51359135 AATTT-CAGCACCTAAACACTTCAATTTGCT-GTACTTAAAAACTTCAATTTACAACATTTAAAA
1 AATTTACAGCACTTAAACACTTCAATTTG-TAGCACTTAAACACTTCAATTTACAACATTTAAAC
51359198 ACTTC
65 ACTTC
* * * * * * * *
51359203 AATTTGCAGCACTTTAACACCTCAATTTATAGCATTTAAACGCTTCAATTTGCAGCACTTT-AAC
1 AATTTACAGCACTTAAACACTTCAATTTGTAGCACTTAAACACTTCAATTTACAACA-TTTAAAC
51359267 ACTTC
65 ACTTC
* * * * * *
51359272 AATTTATAGCATTTAAACACTTCAATTTGCAGCACTTTAACA-TCTCAATTAACAACATTTATAC
1 AATTTACAGCACTTAAACACTTCAATTTGTAGCACTTAAACACT-TCAATTTACAACATTTAAAC
* *
51359336 TCCTC
65 ACTTC
* *
51359341 AATTTCCAGCAAC-TAAACACTTCAATTTGTAGTACTTAAACACTTCAATTTACAACATTTAAAC
1 AATTTACAGC-ACTTAAACACTTCAATTTGTAGCACTTAAACACTTCAATTTACAACATTTAAAC
51359405 ACTTC
65 ACTTC
* * *
51359410 AATTTACAACA-TTCAAACACTTCACTTTGTAGCACTTTAACACTTCAATTTACAACATTTAAAC
1 AATTTACAGCACTT-AAACACTTCAATTTGTAGCACTTAAACACTTCAATTTACAACATTTAAAC
*
51359474 GCTTC
65 ACTTC
* * *
51359479 AATTTGCTGCACTTTAACA-TCTCAATT
1 AATTTACAGCACTTAAACACT-TCAATT
51359506 AACAACATTT
Statistics
Matches: 244, Mismatches: 48, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
68 13 0.05
69 224 0.92
70 7 0.03
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.35
Consensus pattern (69 bp):
AATTTACAGCACTTAAACACTTCAATTTGTAGCACTTAAACACTTCAATTTACAACATTTAAACA
CTTC
Found at i:51361260 original size:29 final size:29
Alignment explanation
Indices: 51361226--51361357 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
51361216 TACTCGATTT
** * *
51361226 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
51361255 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
51361284 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
51361313 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
51361342 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
51361358 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:51368794 original size:29 final size:29
Alignment explanation
Indices: 51368719--51368851 Score: 126
Period size: 29 Copynumber: 4.6 Consensus size: 29
51368709 ATACTCGATT
* *
51368719 TCGCACACTTAGTGCCATGCGATTT-AAGC
1 TCGCACACTTAGTGCCATAC-ATTTCCAGC
* * * * ** *
51368748 CCGCACACATAATACCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATACATTTCCAGC
*
51368777 TCGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATACATTTCCAGC
*
51368806 AT-GCACACTTAGTGCCATATATTTCCAGC
1 -TCGCACACTTAGTGCCATACATTTCCAGC
*
51368835 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
51368852 ATCTCGTCAC
Statistics
Matches: 84, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 81 0.96
30 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATACATTTCCAGC
Found at i:51370864 original size:2 final size:2
Alignment explanation
Indices: 51370857--51370946 Score: 171
Period size: 2 Copynumber: 45.0 Consensus size: 2
51370847 AATAGAAGGG
*
51370857 AC AC AC AC AC AC AC AT AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
51370899 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
51370941 AC AC AC
1 AC AC AC
51370947 GTATATGTAT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
2 86 1.00
ACGTcount: A:0.50, C:0.49, G:0.00, T:0.01
Consensus pattern (2 bp):
AC
Found at i:51373015 original size:47 final size:47
Alignment explanation
Indices: 51372946--51373169 Score: 178
Period size: 47 Copynumber: 4.8 Consensus size: 47
51372936 GGTAAGGTAC
*
51372946 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAATT
1 CGATG-CATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAATT
* * * * *
51372993 CGATGCCATGTACCAGACATGGTCTTACATTAACT-ATCATCTCGTAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC-AATT
* * *
51373041 CGATGCATGTCCCAAACAT-GTCTTACACTAGCTC-TCGTCTCAATGC
1 CGATGCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAAT-T
* * * *
51373087 CAATGCATTGTCCCAGACATGGTCTTACAATGGCTC-T--TAT-AATGT
1 CGATGCA-TGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAAT-T
*
51373132 GGCCAATGCATGTCCCAGACAT-GTCTTACACTAGCTCA
1 ---CGATGCATGTCCCAGACATGGTCTTACACTAGCTCA
51373170 CAAACAAATG
Statistics
Matches: 145, Mismatches: 22, Indels: 20
0.78 0.12 0.11
Matches are distributed among these distances:
45 5 0.03
46 41 0.28
47 71 0.49
48 28 0.19
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAATT
Found at i:51373113 original size:94 final size:93
Alignment explanation
Indices: 51372945--51373169 Score: 240
Period size: 94 Copynumber: 2.4 Consensus size: 93
51372935 GGGTAAGGTA
* * *
51372945 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAATTCGATGCCATGTACCAGA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATATCTCAATCCAATGCCATGTACCAGA
* *
51373010 CATGGTCTTACATTAACTATCAT-CTCGTAG
64 CATGGTCTTACAATAACTATCATAAT-GTAG
* * * *
51373040 TCGATGCATGTCCCAAACATGTCTTACACTAGCTC-TCGTCTCAATGCCAATG-CATTGTCCCAG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCAT-ATCTCAAT-CCAATGCCA-TGTACCAG
** * * *
51373103 ACATGGTCTTACAATGGCTCTTATAATGTGG
63 ACATGGTCTTACAATAACTATCATAATGTAG
*
51373134 CCAATGCATGTCCCAGACATGTCTTACACTAGCTCA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCA
51373170 CAAACAAATG
Statistics
Matches: 108, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
92 1 0.01
93 23 0.21
94 78 0.72
95 6 0.06
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (93 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCATATCTCAATCCAATGCCATGTACCAGACA
TGGTCTTACAATAACTATCATAATGTAG
Found at i:51376218 original size:40 final size:39
Alignment explanation
Indices: 51376173--51376380 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
51376163 CGGAATACAA
*
51376173 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51376213 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51376253 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
51376293 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
51376333 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
51376373 CCGGATAT
1 CCGGATAT
51376381 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:51376313 original size:80 final size:81
Alignment explanation
Indices: 51376173--51376378 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
51376163 CGGAATACAA
* * *
51376173 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
51376237 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
51376253 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
51376316 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
51376333 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
51376379 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:51384359 original size:40 final size:39
Alignment explanation
Indices: 51384314--51384521 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 39
51384304 CGGAATACAA
*
51384314 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
51384354 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51384394 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
51384434 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * *
51384474 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
51384514 CCGGATAT
1 CCGGATAT
51384522 CATTCAATTG
Statistics
Matches: 145, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 1 0.01
40 144 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:51384454 original size:80 final size:80
Alignment explanation
Indices: 51384314--51384521 Score: 265
Period size: 80 Copynumber: 2.6 Consensus size: 80
51384304 CGGAATACAA
* * *
51384314 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
51384379 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
51384394 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
51384458 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * * * *
51384474 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
51384522 CATTCAATTG
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 109 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:51388638 original size:16 final size:16
Alignment explanation
Indices: 51388619--51388650 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51388609 TTTCACTATT
51388619 TAATACCATCCCTACA
1 TAATACCATCCCTACA
51388635 TAATACCATCCCTACA
1 TAATACCATCCCTACA
51388651 ATTTTTGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TAATACCATCCCTACA
Found at i:51392281 original size:40 final size:39
Alignment explanation
Indices: 51392236--51392443 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
51392226 CGGAATACAA
*
51392236 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51392276 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51392316 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
51392356 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
51392396 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
51392436 CCGGATAT
1 CCGGATAT
51392444 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:51392376 original size:80 final size:81
Alignment explanation
Indices: 51392236--51392441 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
51392226 CGGAATACAA
* * *
51392236 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
51392300 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
51392316 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
51392379 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
51392396 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
51392442 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:51399923 original size:63 final size:63
Alignment explanation
Indices: 51399846--51399972 Score: 218
Period size: 63 Copynumber: 2.0 Consensus size: 63
51399836 AGGTACCTGT
*
51399846 ACCATTCACCACACGGTTATACTTTCTTCATTAGCTTAAGAACATAACAGCCACCGTTGAACC
1 ACCATTCACCACACGGTTATACTTTCTTCACTAGCTTAAGAACATAACAGCCACCGTTGAACC
* **
51399909 ACCATTCACCACACGGTTATACTTTCTTCACTAGCTTAAGAACATGACATTCACCGTTGAACC
1 ACCATTCACCACACGGTTATACTTTCTTCACTAGCTTAAGAACATAACAGCCACCGTTGAACC
51399972 A
1 A
51399973 TTTGGAACAC
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (63 bp):
ACCATTCACCACACGGTTATACTTTCTTCACTAGCTTAAGAACATAACAGCCACCGTTGAACC
Found at i:51400091 original size:47 final size:47
Alignment explanation
Indices: 51400022--51400292 Score: 250
Period size: 47 Copynumber: 5.8 Consensus size: 47
51400012 GGTAAGGTGC
*
51400022 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCAT-ATCTCAAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT
*
51400069 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAT-ATCTCAAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT
* * * * *
51400116 TGATGCCATGTACCAGACATGGTCTTACATTGACT-ATCATCTCGTAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGT
* * * * *
51400164 CGATGCATATCGCAGACAT-GTCTTACACTAGCT-TTCATCTCAATGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA-GT
* * *** *
51400210 CAATGCATTGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGC
1 CGATGCA-TGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCAAGT
* *
51400258 CGATGCATGTCCCAAACAT-GTCTTACACTAGCTCA
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTCA
51400293 CAAACAAATG
Statistics
Matches: 187, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 41 0.22
47 112 0.60
48 32 0.17
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT
Found at i:51401575 original size:43 final size:43
Alignment explanation
Indices: 51401489--51401576 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
51401479 ATAAATCGCA
* * *
51401489 CAATGCCAATGTCCCAGACGTGGTCTTATATGTAACCACATAT
1 CAATGCCAATGTCCCAGACGTGGTCTTACACGTAAACACATAT
* * *
51401532 CAATGCCACTGTCCCAGACAG-GGTCTTACCCGTAAACATATAT
1 CAATGCCAATGTCCCAGAC-GTGGTCTTACACGTAAACACATAT
51401575 CA
1 CA
51401577 GAATCACAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 37 0.97
44 1 0.03
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACGTGGTCTTACACGTAAACACATAT
Found at i:51417247 original size:25 final size:25
Alignment explanation
Indices: 51417218--51417265 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51417208 TTATAATATG
* * *
51417218 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
51417243 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
51417266 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:51417348 original size:11 final size:11
Alignment explanation
Indices: 51417312--51417367 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
51417302 CATGGTATGT
51417312 ATGATATGCAC
1 ATGATATGCAC
* *
51417323 ATGACATG--T
1 ATGATATGCAC
51417332 ATGATATGCAC
1 ATGATATGCAC
*
51417343 ATGATATG--T
1 ATGATATGCAC
51417352 ATGATATGCAC
1 ATGATATGCAC
51417363 ATGAT
1 ATGAT
51417368 GTATCATAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:51417367 original size:20 final size:20
Alignment explanation
Indices: 51417301--51417367 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
51417291 ATTTTGATAA
*
51417301 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
51417321 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
51417341 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
51417361 ACATGAT
1 ACATGAT
51417368 GTATCATAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:51417381 original size:40 final size:39
Alignment explanation
Indices: 51417301--51417375 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 39
51417291 ATTTTGATAA
* *
51417301 ACATGGTATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGA-ATGTATCATATGC
51417341 ACATGATATGTATGATATGCACATG-ATGTATCATA
1 ACATGATATGTATGATATGCACATGAATGTATCATA
51417376 AATGCATTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 9 0.27
40 24 0.73
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (39 bp):
ACATGATATGTATGATATGCACATGAATGTATCATATGC
Found at i:51417480 original size:45 final size:47
Alignment explanation
Indices: 51417415--51417533 Score: 215
Period size: 45 Copynumber: 2.6 Consensus size: 47
51417405 GGAGGAAGTG
51417415 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
51417461 -AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
51417507 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
51417534 AGAGGCTAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
45 35 0.50
46 10 0.14
47 25 0.36
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:51417535 original size:24 final size:23
Alignment explanation
Indices: 51417416--51417533 Score: 211
Period size: 23 Copynumber: 5.1 Consensus size: 23
51417406 GAGGAAGTGA
51417416 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
51417439 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
51417461 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
51417484 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
51417507 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
51417531 AAA
1 AAA
51417534 AGAGGCTAGG
Statistics
Matches: 92, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
22 22 0.24
23 48 0.52
24 22 0.24
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:51417783 original size:31 final size:31
Alignment explanation
Indices: 51417748--51417811 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
51417738 CGTTTACAGT
51417748 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
51417779 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51417810 AA
1 AA
51417812 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51422116 original size:31 final size:31
Alignment explanation
Indices: 51422078--51422140 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
51422068 GTGAATTAAA
51422078 GGCGATGTTTGCTCGTCTAAGTTTGTATGAC
1 GGCGATGTTTGCTCGTCTAAGTTTGTATGAC
51422109 GGCGATGTTTGCTCGTCTAAGTTTGTATGAC
1 GGCGATGTTTGCTCGTCTAAGTTTGTATGAC
51422140 G
1 G
51422141 ATGGAAGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.16, C:0.16, G:0.30, T:0.38
Consensus pattern (31 bp):
GGCGATGTTTGCTCGTCTAAGTTTGTATGAC
Found at i:51425436 original size:20 final size:20
Alignment explanation
Indices: 51425413--51425469 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
51425403 TAAACATGGT
51425413 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
51425433 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
51425453 ATG--TGATATGCACATGA
1 ATGTATGATATGCACATGA
51425470 TGCAATCATA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
18 14 0.39
20 22 0.61
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:51425461 original size:18 final size:19
Alignment explanation
Indices: 51425406--51425470 Score: 87
Period size: 20 Copynumber: 3.4 Consensus size: 19
51425396 ATTTTGATAA
*
51425406 ACATGGTATGTATGATATGC
1 ACATGATATG-ATGATATGC
*
51425426 ACATGACATGTATGATATGC
1 ACATGATATG-ATGATATGC
51425446 ACATGATATG-TGATATGC
1 ACATGATATGATGATATGC
51425464 ACATGAT
1 ACATGAT
51425471 GCAATCATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
18 15 0.36
20 27 0.64
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (19 bp):
ACATGATATGATGATATGC
Found at i:51425593 original size:23 final size:24
Alignment explanation
Indices: 51425520--51425613 Score: 131
Period size: 23 Copynumber: 4.0 Consensus size: 24
51425510 GAGGAAGTGA
51425520 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
51425544 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
51425567 AAAAGGGCTTTTGCCCC-GTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
51425590 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
51425614 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
23 38 0.60
24 20 0.32
25 5 0.08
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:51425842 original size:31 final size:31
Alignment explanation
Indices: 51425807--51425870 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
51425797 CATTTACAGT
51425807 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
51425838 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51425869 AA
1 AA
51425871 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51428254 original size:25 final size:25
Alignment explanation
Indices: 51428226--51428273 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51428216 TTATACCATG
* * *
51428226 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
51428251 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
51428274 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:51428342 original size:20 final size:20
Alignment explanation
Indices: 51428317--51428375 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
51428307 TAAATATGGT
*
51428317 ATGTATGAGATGCACATGAC
1 ATGTATGATATGCACATGAC
*
51428337 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
51428357 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
51428376 GGTAATCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:51428453 original size:24 final size:24
Alignment explanation
Indices: 51428426--51428568 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
51428416 GAGGAAGTGA
51428426 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
51428450 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
51428474 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
51428497 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
51428521 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
51428545 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
51428569 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:51428519 original size:47 final size:47
Alignment explanation
Indices: 51428426--51428568 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
51428416 GAGGAAGTGA
51428426 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
51428474 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
51428521 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
51428569 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:51428542 original size:71 final size:72
Alignment explanation
Indices: 51428426--51428569 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
51428416 GAGGAAGTGA
*
51428426 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
51428489 CCAGTTAT
65 CCAGTTAT
** * *
51428497 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
51428562 CAGTTAT
66 CAGTTAT
51428569 A
1 A
51428570 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:51428795 original size:31 final size:31
Alignment explanation
Indices: 51428760--51428854 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
51428750 CGTTTACAGT
51428760 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51428791 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
51428822 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51428853 AA
1 AA
51428855 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51429577 original size:54 final size:54
Alignment explanation
Indices: 51429514--51429617 Score: 181
Period size: 54 Copynumber: 1.9 Consensus size: 54
51429504 AACTCCAATG
*
51429514 TGGCACGTCAGATTCGGCCATAACGTCTGGGCCGGGTTTGGGGTGTTACAAATA
1 TGGCACGTCAGATTCGGCCATAACGTCTGGGCCGAGTTTGGGGTGTTACAAATA
* *
51429568 TGGCACGTCAGATTCGTCCATAACGTTTGGGCCGAGTTTGGGGTGTTACA
1 TGGCACGTCAGATTCGGCCATAACGTCTGGGCCGAGTTTGGGGTGTTACA
51429618 CTTTCGACAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.19, C:0.20, G:0.33, T:0.28
Consensus pattern (54 bp):
TGGCACGTCAGATTCGGCCATAACGTCTGGGCCGAGTTTGGGGTGTTACAAATA
Found at i:51431602 original size:13 final size:13
Alignment explanation
Indices: 51431584--51431608 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51431574 CATTTACAAG
51431584 CCAAATACACATA
1 CCAAATACACATA
51431597 CCAAATACACAT
1 CCAAATACACAT
51431609 GGATTCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (13 bp):
CCAAATACACATA
Found at i:51433554 original size:22 final size:22
Alignment explanation
Indices: 51433529--51433598 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
51433519 CCTAATGTAG
51433529 CTAAGTTTCTGCTACATGTTCC
1 CTAAGTTTCTGCTACATGTTCC
* * * **
51433551 CTAA-TTTTTCCCTATAT-TGTAG
1 CTAAGTTTCT-GCTACATGT-TCC
51433573 CTAAGTTTCTGCTACATGTTCC
1 CTAAGTTTCTGCTACATGTTCC
51433595 CTAA
1 CTAA
51433599 TTTTTCCCTA
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
21 5 0.15
22 24 0.71
23 5 0.15
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.43
Consensus pattern (22 bp):
CTAAGTTTCTGCTACATGTTCC
Found at i:51433579 original size:44 final size:44
Alignment explanation
Indices: 51433524--51433611 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
51433514 GTAACCCTAA
51433524 TGTAGCTAAGTTTCTGCTACATGTTCCCTAATTTTTCCCTATAT
1 TGTAGCTAAGTTTCTGCTACATGTTCCCTAATTTTTCCCTATAT
51433568 TGTAGCTAAGTTTCTGCTACATGTTCCCTAATTTTTCCCTATAT
1 TGTAGCTAAGTTTCTGCTACATGTTCCCTAATTTTTCCCTATAT
51433612 AAACCCTTCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.45
Consensus pattern (44 bp):
TGTAGCTAAGTTTCTGCTACATGTTCCCTAATTTTTCCCTATAT
Found at i:51443221 original size:18 final size:18
Alignment explanation
Indices: 51443198--51443235 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
51443188 GTTAAGTGAA
*
51443198 GTCAGTTTTCTGGGTCAT
1 GTCAGTTTTCTAGGTCAT
51443216 GTCAGTTTTCTAGGTCAT
1 GTCAGTTTTCTAGGTCAT
51443234 GT
1 GT
51443236 GGTATCAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.16, G:0.26, T:0.45
Consensus pattern (18 bp):
GTCAGTTTTCTAGGTCAT
Found at i:51450760 original size:12 final size:15
Alignment explanation
Indices: 51450726--51450757 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
51450716 ATTCCCTATC
51450726 TAATAATAATAATTA
1 TAATAATAATAATTA
51450741 TAATAATAAT-ATTA
1 TAATAATAATAATTA
51450755 TAA
1 TAA
51450758 ATATATCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:51455703 original size:27 final size:27
Alignment explanation
Indices: 51455645--51455734 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
51455635 AGGAAGCGTC
51455645 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
51455673 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
51455700 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
51455729 CTGGTG
1 CTGGTG
51455735 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:51455753 original size:55 final size:56
Alignment explanation
Indices: 51455645--51455759 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
51455635 AGGAAGCGTC
* *
51455645 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
51455700 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
51455756 CTGG
1 CTGG
51455760 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:51462559 original size:46 final size:46
Alignment explanation
Indices: 51462492--51462664 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
51462482 TGTAACCCGC
*
51462492 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
51462538 CCATAAGTGGACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
51462588 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
51462631 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
51462665 AGATGCTCAA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.56
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:51462607 original size:93 final size:93
Alignment explanation
Indices: 51462499--51462670 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
51462489 CGCCCATAAG
* * * *
51462499 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGGACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
51462564 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
*
51462592 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51462657 ACGAGTTCAGATGC
66 ACGAGTTCAGATGC
51462671 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:51462686 original size:46 final size:46
Alignment explanation
Indices: 51462541--51462679 Score: 108
Period size: 47 Copynumber: 3.0 Consensus size: 46
51462531 TTCGCATCCA
* *
51462541 TAAGTGGACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTC-A---ACCATC
* * * * * * *
51462589 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--AGATGCTCAACCATC
51462634 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACCATC
51462680 CTAGTGACAT
Statistics
Matches: 69, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
44 9 0.13
45 2 0.03
46 25 0.36
47 26 0.38
48 2 0.03
49 4 0.06
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACCATC
Found at i:51465450 original size:41 final size:41
Alignment explanation
Indices: 51465405--51465522 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
51465395 TGAAAGATAA
51465405 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
51465446 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51465476 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51465517 ATGTAG
1 ATGTAG
51465523 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:51465461 original size:71 final size:71
Alignment explanation
Indices: 51465373--51465536 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51465363 GAGATGTATC
51465373 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51465438 AGGACA
66 AGGACA
51465444 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51465509 AGGACA
66 AGGACA
51465515 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
51465537 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:51473027 original size:41 final size:41
Alignment explanation
Indices: 51472982--51473099 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
51472972 TGAAAGATAA
51472982 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
51473023 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51473053 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51473094 ATGTAG
1 ATGTAG
51473100 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:51473038 original size:71 final size:71
Alignment explanation
Indices: 51472950--51473113 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51472940 GAGATGTATC
51472950 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51473015 AGGACA
66 AGGACA
51473021 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51473086 AGGACA
66 AGGACA
51473092 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
51473114 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:51484200 original size:27 final size:28
Alignment explanation
Indices: 51484152--51484256 Score: 108
Period size: 27 Copynumber: 3.8 Consensus size: 28
51484142 CTGGTGGCTA
*
51484152 TGCCACAAACTATCTGT-TCTGGTGACCC
1 TGCCACAAA-TATCTGTATCTGGTGACAC
* *
51484180 TGCCACATATATCTGT-TCTGGTGGCAC
1 TGCCACAAATATCTGTATCTGGTGACAC
*
51484207 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCAC-AAATATCTGTATCTGGTGACAC
* * *
51484236 TGTCAC-ATTTTCTGTATCTGG
1 TGCCACAAATATCTGTATCTGG
51484257 CAGCCATGCT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
27 35 0.53
28 17 0.26
29 14 0.21
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (28 bp):
TGCCACAAATATCTGTATCTGGTGACAC
Found at i:51484242 original size:29 final size:28
Alignment explanation
Indices: 51484152--51484242 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
51484142 CTGGTGGCTA
* *
51484152 TGCCACAAACTATCTGTTCTGGTGACCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
51484180 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
51484207 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
51484236 TGTCACA
1 TGCCACA
51484243 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 23 0.43
28 15 0.28
29 15 0.28
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:51484250 original size:55 final size:56
Alignment explanation
Indices: 51484142--51484256 Score: 155
Period size: 55 Copynumber: 2.1 Consensus size: 56
51484132 AGGAAGCGTC
*
51484142 CTGGTGGCTATGCCACAAACTATCTGTTCTGGTGACCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
51484197 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
51484253 CTGG
1 CTGG
51484257 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.57
56 22 0.42
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:51501697 original size:27 final size:27
Alignment explanation
Indices: 51501677--51502088 Score: 454
Period size: 27 Copynumber: 15.3 Consensus size: 27
51501667 AGGGTATTTT
* *
51501677 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
51501704 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
51501731 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
51501758 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * * *
51501785 GGTAATTCTGTAAATCGGGGGTAAAAT
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * * *
51501812 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTATAAATCGA-GGGTAAAAC
* *
51501839 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
51501866 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTATAAATC-GAGGGTAAAAC
*
51501893 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTATAAATCGAGGGTAAAAC
* * *
51501920 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
51501947 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * *
51501974 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * * *
51502001 AATAATTCTGTACA-CTGATGGTAAAAC
1 AGTAATTCTATAAATC-GAGGGTAAAAC
* *
51502028 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * *
51502055 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
51502082 GGTAATT
1 AGTAATT
51502089 GGTATTGCGG
Statistics
Matches: 335, Mismatches: 42, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
26 3 0.01
27 328 0.98
28 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:51501763 original size:81 final size:81
Alignment explanation
Indices: 51501678--51502088 Score: 515
Period size: 81 Copynumber: 5.1 Consensus size: 81
51501668 GGGTATTTTA
* * * *
51501678 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
*
51501743 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAACG
* * ** *
51501759 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGGGGGTAAAATGGTAATTATGTA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
*
51501824 AAT-TAGGGGTAAAACG
66 AATCGA-GGGTAAAACG
*
51501840 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAAC-GATAATTCTG
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACAG-TAATTCTG
51501903 TAAATCGAGGGTAAAACG
64 TAAATCGAGGGTAAAACG
* * * *
51501921 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
* *
51501986 AATCAAGGGTAAAACA
66 AATCGAGGGTAAAACG
* * * * * * * **
51502002 ATAATTCTGTACA-CTGATGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAC
1 GTAATTCTATAAATC-GAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
51502066 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAACG
51502083 GTAATT
1 GTAATT
51502089 GGTATTGCGG
Statistics
Matches: 285, Mismatches: 38, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
80 4 0.01
81 278 0.98
82 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:51502154 original size:27 final size:27
Alignment explanation
Indices: 51502124--51502186 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
51502114 AGGGTATTTT
*
51502124 AGTAATTTTACAAA-TCGAGGGTAAAAC
1 AGTAATTCTACAAACT-GAGGGTAAAAC
*
51502151 AGTAATTCTATAAACTGAGGGTAAAAC
1 AGTAATTCTACAAACTGAGGGTAAAAC
*
51502178 GGTAATTCT
1 AGTAATTCT
51502187 GTAAATCGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29
Consensus pattern (27 bp):
AGTAATTCTACAAACTGAGGGTAAAAC
Done.