Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 174 of 292
Found at i:51796106 original size:2 final size:2
Alignment explanation
Indices: 51796099--51796125 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
51796089 TCATGACATG
51796099 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
51796126 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:51796977 original size:25 final size:25
Alignment explanation
Indices: 51796910--51796978 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 25
51796900 TTACGGGGCC
51796910 TTAGCACGTTAGTACTCTCTGAATA
1 TTAGCACGTTAGTACTCTCTGAATA
* * * *
51796935 TTACCTCGTTCGTACTCTCTGATTA
1 TTAGCACGTTAGTACTCTCTGAATA
* *
51796960 TTAGCACATTAGTTCTCTC
1 TTAGCACGTTAGTACTCTC
51796979 CGTTTAGCAC
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.41
Consensus pattern (25 bp):
TTAGCACGTTAGTACTCTCTGAATA
Found at i:51803852 original size:23 final size:25
Alignment explanation
Indices: 51803826--51803876 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
51803816 CCAGCACACC
51803826 AATATCGCAGCAAAGCTGCCAGAAAT
1 AATA-CGCAGCAAAGCTGCCAGAAAT
* *
51803852 AATGATGCAGCATAGCTGCCAGAAA
1 AAT-ACGCAGCAAAGCTGCCAGAAA
51803877 CAGTAAATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.16
Consensus pattern (25 bp):
AATACGCAGCAAAGCTGCCAGAAAT
Found at i:51803907 original size:27 final size:27
Alignment explanation
Indices: 51803861--51803956 Score: 111
Period size: 27 Copynumber: 3.6 Consensus size: 27
51803851 TAATGATGCA
** *
51803861 GCATAGCTGCCAGAAACAGTAAATGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
* * *
51803888 GCAAAGCCACCAGTATCAGTAATTGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
*
51803915 GCATAGCCACCAGTAACAGTGAATGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
* *
51803942 ACATAGTCACCAGTA
1 GCATAGCCACCAGTA
51803957 CAGAACTTCC
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (27 bp):
GCATAGCCACCAGTAACAGTAAATGTG
Found at i:51804244 original size:27 final size:27
Alignment explanation
Indices: 51804214--51804426 Score: 162
Period size: 27 Copynumber: 7.9 Consensus size: 27
51804204 GGTAAATCTA
* *
51804214 CAAACCAAGGGTATTTCAGCAATTTTG
1 CAAATCAAGGGTATTTCAGTAATTTTG
* *
51804241 CAAATCAATGGTATTTTTA-TAATTTTTG
1 CAAATCAAGGGTA-TTTCAGTAA-TTTTG
* * *
51804269 AAAATCAAAGGTATTTCTGTAATTTTG
1 CAAATCAAGGGTATTTCAGTAATTTTG
* * * *
51804296 TAAATCAGGGGTATTTCTGTAATTTTC
1 CAAATCAAGGGTATTTCAGTAATTTTG
* ** *
51804323 CAAATTAAGGGTATTTTGGTAATTTTT
1 CAAATCAAGGGTATTTCAGTAATTTTG
* **
51804350 CAAATCAGGGGTATTTC-GATAATTTCA
1 CAAATCAAGGGTATTTCAG-TAATTTTG
* * *
51804377 CAAACCAAGGGTATTTTAGTAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
* * *
51804404 CAAA-CCAGGGTTTTTCGGTAATT
1 CAAATCAAGGGTATTTCAGTAATT
51804427 CTACCCTCGG
Statistics
Matches: 150, Mismatches: 31, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
26 16 0.11
27 110 0.73
28 24 0.16
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCAGTAATTTTG
Found at i:51804399 original size:81 final size:82
Alignment explanation
Indices: 51804213--51804407 Score: 207
Period size: 81 Copynumber: 2.4 Consensus size: 82
51804203 TGGTAAATCT
* * * * *
51804213 ACAAACCAAGGGTATTTCAGCAATTTTGCAAATCAATGGTATTTTTATAATTTTTGAAAATCAAA
1 ACAAACCAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTGATAATTTTTGAAAATCAAA
*
51804278 GGTATTTCTGTAATTTT
66 GGTATTTCTGTAATTTC
** * * * * * * *
51804295 GTAAATCAGGGGTATTTCT-GTAATTTTCCAAATTAAGGGTATTTTGGTAATTTTT-CAAATCAG
1 ACAAACCAAGGGTATTT-TAGTAATTTTACAAATCAAGGGTATTTTGATAATTTTTGAAAATCAA
*
51804358 GGGTATTTC-GATAATTTC
65 AGGTATTTCTG-TAATTTC
51804376 ACAAACCAAGGGTATTTTAGTAATTTTACAAA
1 ACAAACCAAGGGTATTTTAGTAATTTTACAAA
51804408 CCAGGGTTTT
Statistics
Matches: 90, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
80 2 0.02
81 45 0.50
82 43 0.48
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (82 bp):
ACAAACCAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTGATAATTTTTGAAAATCAAA
GGTATTTCTGTAATTTC
Found at i:51806384 original size:60 final size:60
Alignment explanation
Indices: 51806286--51806405 Score: 188
Period size: 60 Copynumber: 2.0 Consensus size: 60
51806276 TTGACGGTAC
51806286 AAAGGATCTAGCCCGGACAGGTGATCCTAATGAGATAGCCCT-CTCGAAGAATATGTGTGA
1 AAAGGATCTAGCCCGGACAGGTGATCCTAATGAGATAGCCCTCCT-GAAGAATATGTGTGA
* ** *
51806346 AAAGGATCTAGCTCGGATGGGTGATCCTAATGATATAGCCCTCCTGAAGAATATGTGTGA
1 AAAGGATCTAGCCCGGACAGGTGATCCTAATGAGATAGCCCTCCTGAAGAATATGTGTGA
51806406 GTCTAGATTT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 53 0.96
61 2 0.04
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (60 bp):
AAAGGATCTAGCCCGGACAGGTGATCCTAATGAGATAGCCCTCCTGAAGAATATGTGTGA
Found at i:51806627 original size:67 final size:67
Alignment explanation
Indices: 51806519--51806649 Score: 183
Period size: 67 Copynumber: 2.0 Consensus size: 67
51806509 CATATGTTGC
* ** * * *
51806519 AGGGGATTTAGCCTGGAATGGTAATCCTGCTGTAAGAAATGAGGTTCGCAGGAGTGTGCTCTCTC
1 AGGGGATTTAGCCTGGAATGGTAACCCCACTATAAGAAATGAGGTTCACAGGAATGTGCTCTCTC
51806584 AT
66 AT
*
51806586 AGGGGATTTAGCCTGGACA-GGTAACCCCACTATAAGAAATGAGGTTCACGGGAATGTGCTCTCT
1 AGGGGATTTAGCCTGGA-ATGGTAACCCCACTATAAGAAATGAGGTTCACAGGAATGTGCTCTCT
51806650 GAAATGGAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
67 55 0.98
68 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (67 bp):
AGGGGATTTAGCCTGGAATGGTAACCCCACTATAAGAAATGAGGTTCACAGGAATGTGCTCTCTC
AT
Found at i:51806797 original size:20 final size:22
Alignment explanation
Indices: 51806772--51806811 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
51806762 AAATGGTAAG
51806772 AACTTGAAAT-CA-AGAAATAA
1 AACTTGAAATACATAGAAATAA
51806792 AACTTGAAATACATAGAAAT
1 AACTTGAAATACATAGAAAT
51806812 GATAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 2 0.11
22 6 0.33
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.23
Consensus pattern (22 bp):
AACTTGAAATACATAGAAATAA
Found at i:51807876 original size:29 final size:29
Alignment explanation
Indices: 51807843--51807900 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
51807833 AGCCAGTGTA
51807843 AGACCATGTCTGGGACATGGCATCGGCAT
1 AGACCATGTCTGGGACATGGCATCGGCAT
51807872 AGACCATGTCTGGGACATGGCATCGGCAT
1 AGACCATGTCTGGGACATGGCATCGGCAT
51807901 TGAGATGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.21
Consensus pattern (29 bp):
AGACCATGTCTGGGACATGGCATCGGCAT
Found at i:51807974 original size:46 final size:46
Alignment explanation
Indices: 51807871--51808037 Score: 137
Period size: 46 Copynumber: 3.6 Consensus size: 46
51807861 GGCATCGGCA
* * *
51807871 TAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAATGCTAGTGT
1 TAGA-CATGTCTGGGACAT-GCTTCGGCATCGAGATGAATGCCAGTGT
* * *
51807919 AAGATATGTCTGGGACATGCTTCGGCCTCGAGACAT-AA-GCCAGTGT
1 TAGACATGTCTGGGACATGCTTCGGCATCGAG--ATGAATGCCAGTGT
* **
51807965 TAGACATGTCTGGGACATGCTTCAGC-TACGAGATG--TGTTAGTGT
1 TAGACATGTCTGGGACATGCTTCGGCAT-CGAGATGAATGCCAGTGT
* *
51808009 AAGACCATGTCTGGGACATGGCATCGGCA
1 TAGA-CATGTCTGGGACAT-GCTTCGGCA
51808038 CAGATATGCT
Statistics
Matches: 97, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
44 11 0.11
45 15 0.15
46 51 0.53
47 15 0.15
48 5 0.05
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (46 bp):
TAGACATGTCTGGGACATGCTTCGGCATCGAGATGAATGCCAGTGT
Found at i:51816692 original size:93 final size:93
Alignment explanation
Indices: 51816580--51816751 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51816570 GCCCATAAGT
* *
51816580 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51816645 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
51816673 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51816738 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
51816752 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51816747 original size:46 final size:46
Alignment explanation
Indices: 51816572--51816747 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
51816562 TGTAACCCGC
* * *
51816572 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51816618 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
51816668 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
51816711 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51816748 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51819175 original size:30 final size:30
Alignment explanation
Indices: 51819131--51819219 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
51819121 CAAAGATAAC
51819131 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
51819160 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
51819190 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
51819220 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:51819179 original size:15 final size:15
Alignment explanation
Indices: 51819131--51819210 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
51819121 CAAAGATAAC
*
51819131 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
51819145 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
51819160 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
51819175 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
51819190 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
51819205 AAGAAA
1 AAGAAA
51819211 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:51819219 original size:15 final size:15
Alignment explanation
Indices: 51819142--51819219 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
51819132 AGAAAACCGA
51819142 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
51819157 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
51819171 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
51819186 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
51819202 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
51819217 ATA
1 ATA
51819220 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:51822273 original size:93 final size:93
Alignment explanation
Indices: 51822161--51822332 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51822151 GCCCATAAGT
* *
51822161 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51822226 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
51822254 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51822319 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
51822333 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51822328 original size:46 final size:46
Alignment explanation
Indices: 51822153--51822328 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
51822143 TGTAACCCGC
* * *
51822153 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51822199 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
51822249 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
51822292 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51822329 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51828132 original size:47 final size:47
Alignment explanation
Indices: 51828079--51828280 Score: 287
Period size: 47 Copynumber: 4.3 Consensus size: 47
51828069 AGGATTTAAG
* *
51828079 GTGATGAATGTGAACCTGCATATATGTGATAAGGCCGAATGACCAAT
1 GTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGACCAAT
* *
51828126 GTGATGAATATGAACATGCATATATGAGATAAGGCCGAACGACCAAT
1 GTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGACCAAT
* * * * *
51828173 GTGATGAATGTGAGCATGCATATGTGTGATAAGACCGAATGGCCAAT
1 GTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGACCAAT
** * *
51828220 GTGATGAATGTGAATGTGCATATATGAGATAAGGCAGAATGGCCAAT
1 GTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGACCAAT
51828267 GTGATGAATGTGAA
1 GTGATGAATGTGAA
51828281 AGTGTATATA
Statistics
Matches: 137, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 137 1.00
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.25
Consensus pattern (47 bp):
GTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGACCAAT
Found at i:51828305 original size:94 final size:93
Alignment explanation
Indices: 51828079--51828314 Score: 262
Period size: 94 Copynumber: 2.5 Consensus size: 93
51828069 AGGATTTAAG
* * * *
51828079 GTGATGAATGTGA-ACCTGCATATATGTGATAAGGCCGAATGACCAATGTGATGAATATGAACAT
1 GTGATGAATGTGAGA-ATGCATATGTGTGAGAA-GCCGAATGGCCAATGTGATGAATATGAACAT
*
51828143 GCATATATGAGATAAGGCCGAACGACCAAT
64 GCATATATGAGATAAGGCAGAACGACCAAT
* * * **
51828173 GTGATGAATGTGAGCATGCATATGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGAATGTG
1 GTGATGAATGTGAGAATGCATATGTGTGAGAAG-CCGAATGGCCAATGTGATGAATATGAACATG
* *
51828238 CATATATGAGATAAGGCAGAATGGCCAAT
65 CATATATGAGATAAGGCAGAACGACCAAT
* * *
51828267 GTGATGAATGTGA-AAGTGTATATACGTG-GCGAAGCCGAATGGCTAATG
1 GTGATGAATGTGAGAA-TGCATAT--GTGTGAGAAGCCGAATGGCCAATG
51828315 CGAAACGTGT
Statistics
Matches: 122, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
93 2 0.02
94 113 0.93
95 4 0.03
96 3 0.02
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (93 bp):
GTGATGAATGTGAGAATGCATATGTGTGAGAAGCCGAATGGCCAATGTGATGAATATGAACATGC
ATATATGAGATAAGGCAGAACGACCAAT
Found at i:51830014 original size:27 final size:28
Alignment explanation
Indices: 51829958--51830027 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
51829948 AAATTTGTAC
51829958 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51829986 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51830013 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51830028 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:51837908 original size:27 final size:28
Alignment explanation
Indices: 51837852--51837921 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
51837842 AAATTTGTAC
51837852 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51837880 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51837907 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51837922 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:51845257 original size:2 final size:2
Alignment explanation
Indices: 51845250--51845279 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
51845240 TTTGGAAGTG
51845250 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51845280 GTATGCCCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51845809 original size:27 final size:28
Alignment explanation
Indices: 51845753--51845822 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
51845743 AAATTTGTAC
51845753 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51845781 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51845808 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51845823 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:51853703 original size:27 final size:28
Alignment explanation
Indices: 51853647--51853716 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
51853637 AAATTTGTAC
51853647 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51853675 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51853702 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51853717 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:51861551 original size:27 final size:28
Alignment explanation
Indices: 51861495--51861564 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
51861485 AAATTTGTAC
51861495 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51861523 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51861550 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51861565 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:51863044 original size:2 final size:2
Alignment explanation
Indices: 51863037--51863062 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
51863027 ATGAGATGTG
51863037 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
51863063 CGTTGTGGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51866713 original size:47 final size:47
Alignment explanation
Indices: 51866643--51866858 Score: 194
Period size: 47 Copynumber: 4.6 Consensus size: 47
51866633 TATGAGAGAA
* * * **
51866643 AGTGTAAGACCATGTTTGTGACATGGCATCGACATTGAGACGA-GGGTT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGAC-TTGAGACGATGAGCC
* *
51866691 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTGAGAC-ATAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GACTTGAGACGATGAGCC
* * * **
51866737 AGTGTAGGACATGTCTGGGACAT-GCATCTG-CTACGAGATGAT-AGTT
1 AGTGTAAGACATGTCTGGGACATGGCATC-GACT-TGAGACGATGAGCC
*
51866783 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGA-TATGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGACTTGAGACGATGAGCC
*
51866830 AGTGTAAGACAATGCCTGGGACATGGCAT
1 AGTGTAAGAC-ATGTCTGGGACATGGCAT
51866859 TGGCACCTTA
Statistics
Matches: 140, Mismatches: 19, Indels: 19
0.79 0.11 0.11
Matches are distributed among these distances:
45 3 0.02
46 58 0.41
47 63 0.45
48 16 0.11
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGACTTGAGACGATGAGCC
Found at i:51866727 original size:46 final size:46
Alignment explanation
Indices: 51866596--51866854 Score: 184
Period size: 46 Copynumber: 5.5 Consensus size: 46
51866586 GAGTGTGAAC
* ** ** * *
51866596 TAGTGTAAGACATGTCTGGGACATGCATCAGCCACGTTATGAGAGA
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGAGAGT
* * * * * *
51866642 AAGTGTAAGACCATGTTTGTGACATGGCATCGACATTGAGACGAGGGT
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGACGAGAGT
* *
51866690 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGAC-ATAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGA-GAGT
* * * * * *
51866736 CAGTGTAGGACATGTCTGGGACATGCATCTG-CTACGAGATGATAGT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCT-TGAGACGAGAGT
* * *
51866782 TAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGA-TATGAGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGACGA-GAGT
* *
51866829 CAGTGTAAGACAATGCCTGGGACATG
1 TAGTGTAAGAC-ATGTCTGGGACATG
51866855 GCATTGGCAC
Statistics
Matches: 167, Mismatches: 36, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
45 3 0.02
46 69 0.41
47 67 0.40
48 28 0.17
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGAGAGT
Found at i:51866849 original size:140 final size:140
Alignment explanation
Indices: 51866597--51866854 Score: 349
Period size: 140 Copynumber: 1.8 Consensus size: 140
51866587 AGTGTGAACT
** * *
51866597 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGTTATGAGAGAAAGTGTAAGACCATGTTTGT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAGAGAAAGTGTAAGACCATGTCTGG
* ** *
51866662 GACATGGCATCGACATTGAGACGAGGGTTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGA
66 GACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGCCTGGGACATGCATCGGCCTTGA
51866727 GACATAAGCC
131 GACATAAGCC
* * * * **
51866737 AGTGTAGGACATGTCTGGGACATGCATCTGCTACGAGATGATAGTTAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAGAGAAAGTGTAAGACCATGTCTGG
*
51866802 GACATGGCATCGAC-TTGAGA-TATGAGCCAGTGTAAGACAATGCCTGGGACATG
66 GACATGGCATCGACATTGAGACGA-GAGCCAGTGTAAGAC-ATGCCTGGGACATG
51866855 GCATTGGCAC
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
138 1 0.01
139 18 0.18
140 82 0.81
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAGAGAAAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGCCTGGGACATGCATCGGCCTTGA
GACATAAGCC
Found at i:51867843 original size:28 final size:28
Alignment explanation
Indices: 51867811--51867865 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
51867801 ACACGGGCTA
51867811 GGACACGGGCGTGTTGTGGCCGTGTGAG
1 GGACACGGGCGTGTTGTGGCCGTGTGAG
51867839 GGACACGGGCGTGTTGTGGCCGTGTGA
1 GGACACGGGCGTGTTGTGGCCGTGTGA
51867866 AGGATACAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.11, C:0.18, G:0.49, T:0.22
Consensus pattern (28 bp):
GGACACGGGCGTGTTGTGGCCGTGTGAG
Found at i:51867879 original size:28 final size:28
Alignment explanation
Indices: 51867810--51867895 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 28
51867800 TACACGGGCT
* *
51867810 AGGACACGGGCGTGTTGTGGCCGTGTGA
1 AGGACACAGACGTGTTGTGGCCGTGTGA
* * *
51867838 GGGACACGGGCGTGTTGTGGCCGTGTGA
1 AGGACACAGACGTGTTGTGGCCGTGTGA
* * *
51867866 AGGATACAGACGTGTGTCTAGCCGTGTGA
1 AGGACACAGACGTGT-TGTGGCCGTGTGA
51867895 A
1 A
51867896 AACCACTGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 38 0.76
29 12 0.24
ACGTcount: A:0.17, C:0.17, G:0.43, T:0.22
Consensus pattern (28 bp):
AGGACACAGACGTGTTGTGGCCGTGTGA
Found at i:51871248 original size:28 final size:27
Alignment explanation
Indices: 51871185--51871254 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
51871175 ATAGTGAGTC
51871185 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
51871212 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
51871240 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51871255 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:51873069 original size:28 final size:28
Alignment explanation
Indices: 51873028--51873122 Score: 104
Period size: 28 Copynumber: 3.4 Consensus size: 28
51873018 AGGAAGCGTC
*
51873028 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
* *
51873056 CTGGTGGCTCTGCCACATA-TATCTGTT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
* * *
51873083 CTGGTGGCTTTGCCAC-GATTATCTATAT
1 CTGGTGGCTCTGCCACAAATTATCT-GAT
*
51873111 CTGGTGACTCTG
1 CTGGTGGCTCTG
51873123 TCATGTTATC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 27 0.48
28 28 0.50
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATTATCTGAT
Found at i:51873086 original size:27 final size:26
Alignment explanation
Indices: 51873028--51873140 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
51873018 AGGAAGCGTC
* *
51873028 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
51873056 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
* *
51873083 CTGGTGGCTTTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * **
51873111 CTGGTGACTCTGTCATGTTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
51873137 CTGG
1 CTGG
51873141 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.10
27 35 0.49
28 30 0.42
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:51873113 original size:55 final size:54
Alignment explanation
Indices: 51873028--51873140 Score: 138
Period size: 55 Copynumber: 2.1 Consensus size: 54
51873018 AGGAAGCGTC
*
51873028 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * * **
51873083 CTGGTGGCTTTGCCAC-GATTATCTATATCTGGTGACTCTGTCATGTTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCT-GATCTGGTGACTCTGCCACATTATCTGTT
51873137 CTGG
1 CTGG
51873141 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
54 19 0.38
55 31 0.62
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:51876353 original size:28 final size:28
Alignment explanation
Indices: 51876320--51876419 Score: 155
Period size: 28 Copynumber: 3.6 Consensus size: 28
51876310 AATATGGTAG
51876320 TTAGTGTACGAAATATTGAGAATGGCAC
1 TTAGTGTACGAAATATTGAGAATGGCAC
51876348 TTAGTGTACGAAATATTGAGAATGGCAC
1 TTAGTGTACGAAATATTGAGAATGGCAC
* * *
51876376 TTAGTGTGCGAGATATTGAGAATGACAC
1 TTAGTGTACGAAATATTGAGAATGGCAC
* *
51876404 TTAGTGTGCAAAATAT
1 TTAGTGTACGAAATAT
51876420 CGAATGATTC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
TTAGTGTACGAAATATTGAGAATGGCAC
Found at i:51878458 original size:29 final size:29
Alignment explanation
Indices: 51878419--51878630 Score: 182
Period size: 29 Copynumber: 7.4 Consensus size: 29
51878409 CCGTAATCGA
51878419 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * **** *
51878448 GCACTGTGTGTGCGAGTTCCG-TAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
51878476 GCACT-TGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ***
51878504 GCACTGTGTGTGCGAGTTCCG-TACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
51878531 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * **** *
51878560 GCACTGTGTGTGCGAGTTCCG-TAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* *
51878588 GCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
51878617 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
51878631 AAATGAGATC
Statistics
Matches: 136, Mismatches: 40, Indels: 12
0.72 0.21 0.06
Matches are distributed among these distances:
27 32 0.24
28 40 0.29
29 57 0.42
31 7 0.05
ACGTcount: A:0.17, C:0.18, G:0.36, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:51878511 original size:56 final size:57
Alignment explanation
Indices: 51878389--51878630 Score: 398
Period size: 56 Copynumber: 4.2 Consensus size: 57
51878379 AAGTGAACAT
* * *
51878389 AGGCACTGTGTGTGTGAGTTCCGTAATCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
51878446 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACT-TGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
51878502 AGGCACTGTGTGTGCGAGTTCCGT-ACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
51878558 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
51878615 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
51878631 AAATGAGATC
Statistics
Matches: 174, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
55 9 0.05
56 90 0.52
57 68 0.39
59 7 0.04
ACGTcount: A:0.17, C:0.18, G:0.36, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:51883577 original size:28 final size:28
Alignment explanation
Indices: 51883540--51883645 Score: 151
Period size: 28 Copynumber: 3.8 Consensus size: 28
51883530 GCAATCAAAT
*
51883540 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
51883568 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
51883596 AT-GCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
51883623 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
51883646 CGAATGATTC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
27 25 0.35
28 46 0.65
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:51890577 original size:16 final size:15
Alignment explanation
Indices: 51890551--51890580 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
51890541 ACTAGATTGG
51890551 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
51890566 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
51890581 TCGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:51891053 original size:27 final size:28
Alignment explanation
Indices: 51890998--51891107 Score: 120
Period size: 27 Copynumber: 4.0 Consensus size: 28
51890988 AAGCGTCCTA
* * *
51890998 GTGGCTATGCCACAAATTATCTGATCTG
1 GTGGCTCTGCCACATATTATCTGTTCTG
51891026 GTGGCTCTGCCACATA-TATCTGTTCTG
1 GTGGCTCTGCCACATATTATCTGTTCTG
* *
51891053 GTGGCTCTGCCACA-ATTATATGTATCTA
1 GTGGCTCTGCCACATATTATCTGT-TCTG
* *
51891081 GTGACTCTGTCAC--ATTATCTGTTCTG
1 GTGGCTCTGCCACATATTATCTGTTCTG
51891107 G
1 G
51891108 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 5 0.07
27 38 0.54
28 28 0.39
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (28 bp):
GTGGCTCTGCCACATATTATCTGTTCTG
Found at i:51891089 original size:55 final size:54
Alignment explanation
Indices: 51890998--51891107 Score: 150
Period size: 55 Copynumber: 2.0 Consensus size: 54
51890988 AAGCGTCCTA
* * *
51890998 GTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAAATTATATGATCTAGTGACTCTGCCACAT-TATCTGTTCTG
* *
51891053 GTGGCTCTGCCAC-AATTATATGTATCTAGTGACTCTGTCACATTATCTGTTCTG
1 GTGGCTATGCCACAAATTATATG-ATCTAGTGACTCTGCCACATTATCTGTTCTG
51891107 G
1 G
51891108 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 20 0.41
55 29 0.59
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (54 bp):
GTGGCTATGCCACAAATTATATGATCTAGTGACTCTGCCACATTATCTGTTCTG
Found at i:51892364 original size:27 final size:27
Alignment explanation
Indices: 51892293--51892393 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 27
51892283 TGTTACAATA
* * *
51892293 GGGGTATTTCGGTCATTATACCTTTTG
1 GGGGTATTTCGGTCATTTTACCCTATG
51892320 GGGGTATTTCGGTCATTTTACCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATG
* * * *
51892347 GGGGTATTTCAGTTATTTT-CATCTATA
1 GGGGTATTTCGGTCATTTTAC-CCTATG
**
51892374 ATGGTATTTCGGTCATTTTA
1 GGGGTATTTCGGTCATTTTA
51892394 TCACATAAGG
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.02
27 60 0.98
ACGTcount: A:0.18, C:0.14, G:0.23, T:0.46
Consensus pattern (27 bp):
GGGGTATTTCGGTCATTTTACCCTATG
Found at i:51892401 original size:27 final size:27
Alignment explanation
Indices: 51892321--51892431 Score: 84
Period size: 27 Copynumber: 4.1 Consensus size: 27
51892311 TACCTTTTGG
* **
51892321 GGGTATTTCGGTCATTTTA-CCCTATGG
1 GGGTATTTCGGTCATTTTATCAC-ATAA
* * *
51892348 GGGTATTTCAGTTATTTTCATC-TATAA
1 GGGTATTTCGGTCATTTT-ATCACATAA
*
51892375 TGGTATTTCGGTCATTTTATCACATAA
1 GGGTATTTCGGTCATTTTATCACATAA
* **
51892402 GGGCAAAATC-GTCATTTTATCACATAA
1 GGG-TATTTCGGTCATTTTATCACATAA
51892429 GGG
1 GGG
51892432 CAAAATCATT
Statistics
Matches: 67, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
26 3 0.04
27 59 0.88
28 4 0.06
29 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTATCACATAA
Found at i:51892432 original size:27 final size:27
Alignment explanation
Indices: 51892385--51892485 Score: 175
Period size: 27 Copynumber: 3.7 Consensus size: 27
51892375 TGGTATTTCG
51892385 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
51892412 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
51892439 ATTATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
51892466 GTCATTTTATCACATGAGGG
1 GTCATTTTATCACATAAGGG
51892486 TTCAGGTACG
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:51897289 original size:425 final size:425
Alignment explanation
Indices: 51896488--51897338 Score: 1333
Period size: 425 Copynumber: 2.0 Consensus size: 425
51896478 ATGTCGAGCA
* *
51896488 TTTGAGAATTGTATTGCAGACCCTATTTGAGAAGTGTTTGTTTGCCAAATTTAGTAAATGTGAAT
1 TTTGAGAATTGTATTCCAGACCCTAATTGAGAAGTGTTTGTTTGCCAAATTTAGTAAATGTGAAT
* * **
51896553 TTTGGCTACGAGAAGTTGGTTTTCTGGGACATATAGTGTTTGCCGAAAGCATCAGAGTTGATCCA
66 TCTAGCTACGAGAAGTTGGTTTTCTGGGACATATAGTGTCAGCCGAAAGCATCAGAGTTGATCCA
* * *
51896618 AGAAAAATTTCAGCAGTAGTTGATTAGAAACCACCAAGAAACGTATTCGAAGTCAGAAGTTTTCT
131 AGAAAAATTTCAGCAGTAGTTGATTAGAAACCACCAAGAAACGTATCCAAAGTCAGAAGTTTTAT
* * * * * **
51896683 GGGATTAGCTGGTTATTATAGAAGATTCATCAAAGGGTTCTCAATGATAGCTACTCCGGTGACGC
196 CGAATTAGCTGCTTATTACAGAAGATTCATCAAAGGATTCTCAATGATAGCTACTCCAATGACGC
* * *
51896748 GACTGTTATAGAAAGATGTGAAGTTTGAGTGGTCCGAGAAATGTCAGCAAAGTTTCAATCAGTTG
261 GACTGTTATAGAAAAATGTGAAGTTTGAGTGGTCCGAGAAATGTCAGAAAAGTGTCAATCAGTTG
* *
51896813 AAAGCACTGTTGATCGAGGCACCAGTTTTAGTTCAGCTTGAATCAGGTAAAAATTTCATAATTTT
326 AAAGCACTATTGATCGAGGCACCAGTTTTAGTTCAGCCTGAATCAGGTAAAAATTTCATAATTTT
* * *
51896878 TAGTGATGCATCTTTGAATGGTTTAGGCTGCATTT
391 TAGTGATGCATCTATGAATAGTTTAGGCTACATTT
*
51896913 TTTGAGAATTGTATTCCAGATCCTAATTGAGAAGTGTTTGTTTGCCAAATTTAGTAAATGTGAAT
1 TTTGAGAATTGTATTCCAGACCCTAATTGAGAAGTGTTTGTTTGCCAAATTTAGTAAATGTGAAT
* *
51896978 TCTAGCTACGAGAAGTTGGTTTTCTGGGACATATAGTGTCAGCCGAAGGCATCAGAGTTGATCCG
66 TCTAGCTACGAGAAGTTGGTTTTCTGGGACATATAGTGTCAGCCGAAAGCATCAGAGTTGATCCA
* * * * * *
51897043 AGTAAAATTTCAGCAGTTGTTGATTGGAAACCATCGAGAAACGTATCCAAAGTTAGAAGTTTTAT
131 AGAAAAATTTCAGCAGTAGTTGATTAGAAACCACCAAGAAACGTATCCAAAGTCAGAAGTTTTAT
* *
51897108 CGAATTAGCTGCTTATTACAGAATATTCATCAAAGGATTCTCAATGATAGCTACTCTAATGACGC
196 CGAATTAGCTGCTTATTACAGAAGATTCATCAAAGGATTCTCAATGATAGCTACTCCAATGACGC
* *
51897173 GACTGTTATAGAAAAATTTGAAGTTTGAGTGGTCCGAGAAATGTCAGAAAAGTGTCAATTAGTTG
261 GACTGTTATAGAAAAATGTGAAGTTTGAGTGGTCCGAGAAATGTCAGAAAAGTGTCAATCAGTTG
* * **
51897238 AAAGCACTATTGATCGAGGCACCAGTTTTAGTTCAGCCTGAATCGGGTAAAATTTTTGTAATTTT
326 AAAGCACTATTGATCGAGGCACCAGTTTTAGTTCAGCCTGAATCAGGTAAAAATTTCATAATTTT
51897303 TAGTGATGCATCTATGAATAGTTTAGGCTACATTT
391 TAGTGATGCATCTATGAATAGTTTAGGCTACATTT
51897338 T
1 T
51897339 GATGCAGGAA
Statistics
Matches: 385, Mismatches: 41, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
425 385 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.33
Consensus pattern (425 bp):
TTTGAGAATTGTATTCCAGACCCTAATTGAGAAGTGTTTGTTTGCCAAATTTAGTAAATGTGAAT
TCTAGCTACGAGAAGTTGGTTTTCTGGGACATATAGTGTCAGCCGAAAGCATCAGAGTTGATCCA
AGAAAAATTTCAGCAGTAGTTGATTAGAAACCACCAAGAAACGTATCCAAAGTCAGAAGTTTTAT
CGAATTAGCTGCTTATTACAGAAGATTCATCAAAGGATTCTCAATGATAGCTACTCCAATGACGC
GACTGTTATAGAAAAATGTGAAGTTTGAGTGGTCCGAGAAATGTCAGAAAAGTGTCAATCAGTTG
AAAGCACTATTGATCGAGGCACCAGTTTTAGTTCAGCCTGAATCAGGTAAAAATTTCATAATTTT
TAGTGATGCATCTATGAATAGTTTAGGCTACATTT
Found at i:51898402 original size:44 final size:44
Alignment explanation
Indices: 51898339--51898430 Score: 175
Period size: 44 Copynumber: 2.1 Consensus size: 44
51898329 GCAAACCCCA
*
51898339 TTACACTTTAACAACCCCAATATACACTAGTTCATTCATGAAAC
1 TTACACTTTAACAACCCCAATATACAATAGTTCATTCATGAAAC
51898383 TTACACTTTAACAACCCCAATATACAATAGTTCATTCATGAAAC
1 TTACACTTTAACAACCCCAATATACAATAGTTCATTCATGAAAC
51898427 TTAC
1 TTAC
51898431 TCATCCATGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.39, C:0.26, G:0.04, T:0.30
Consensus pattern (44 bp):
TTACACTTTAACAACCCCAATATACAATAGTTCATTCATGAAAC
Found at i:51899116 original size:50 final size:50
Alignment explanation
Indices: 51899036--51899295 Score: 203
Period size: 50 Copynumber: 5.3 Consensus size: 50
51899026 ACCATATCCT
* * * *
51899036 AGACTTGGTCTTACATTG--TCTCATACATCGAAGTCGTTGCCAAGTCCC
1 AGACATGGTCTTACACTGAATCTCATATATCGAAGTCGATGCCAAGTCCC
* * *
51899084 AGACATGGTCTTATAGTGAATCTCATATATCGAAGTCGATGCCATGTCCC
1 AGACATGGTCTTACACTGAATCTCATATATCGAAGTCGATGCCAAGTCCC
* * * * * ** *
51899134 AGACATGGTCTTACACTGACTCTTATATATC-AGGACCAATGCCCTGTCCT
1 AGACATGGTCTTACACTGAATCTCATATATCGAAG-TCGATGCCAAGTCCC
* ** * ** * * *
51899184 AGACATGGTTTTACACTGGCTCTCATCTATCGGTGCCGATGCCATGTCCT
1 AGACATGGTCTTACACTGAATCTCATATATCGAAGTCGATGCCAAGTCCC
* * * *
51899234 AGACATGGTCTTACATTG-A---CACATATC-AAGCCGATGCCATGTCCC
1 AGACATGGTCTTACACTGAATCTCATATATCGAAGTCGATGCCAAGTCCC
51899279 AGACATGGTCTTACACT
1 AGACATGGTCTTACACT
51899296 AGCTTTCAGG
Statistics
Matches: 176, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
45 31 0.18
46 6 0.03
48 15 0.09
49 2 0.01
50 121 0.69
51 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (50 bp):
AGACATGGTCTTACACTGAATCTCATATATCGAAGTCGATGCCAAGTCCC
Found at i:51899320 original size:95 final size:98
Alignment explanation
Indices: 51899073--51899346 Score: 265
Period size: 95 Copynumber: 2.8 Consensus size: 98
51899063 TCGAAGTCGT
* * * * * ** *
51899073 TGCCAAGTCCCAGACATGGTCTTATAGT-GAATCTCATATATCGAAGTCGATGCCATGTCCCAGA
1 TGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATCTATCGGTGCCGATGCCATGTCCCAGA
* *
51899137 CATGGTCTTACACTGACTCTTATATATCAGGACCAA
65 CATGGTCTTACACTGAC-C-TACATATCAAGACCAA
* * * * *
51899173 TGCCCTGTCCTAGACATGGTTTTACACTGGCTCTCATCTATCGGTGCCGATGCCATGTCCTAGAC
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTATCGGTGCCGATGCCATGTCCCAGAC
* *
51899238 ATGGTCTTACATTGA-C-ACATATCAAG-CCGA
66 ATGGTCTTACACTGACCTACATATCAAGACCAA
* *
51899268 TGCCATGTCCCAGACATGGTCTTACACTAGCTTTCAGGTCT-T-GAG-GCTGATGCCATGTCCCA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA--TCTATCG-GTGCCGATGCCATGTCCCA
*
51899330 AACATGGTCTTACACTG
63 GACATGGTCTTACACTG
51899347 GCTCTCATAA
Statistics
Matches: 145, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
95 65 0.45
96 10 0.07
97 3 0.02
98 1 0.01
100 65 0.45
101 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (98 bp):
TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTATCGGTGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGACCTACATATCAAGACCAA
Found at i:51899321 original size:145 final size:143
Alignment explanation
Indices: 51899110--51899404 Score: 334
Period size: 145 Copynumber: 2.0 Consensus size: 143
51899100 TGAATCTCAT
*
51899110 ATATCGAAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTTATATATCAGGACCAATG
1 ATATC-AAGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTTATATATCAGGACCAATG
* * * * * * *
51899175 CCCTGTCCTAGACATGGTTTTACACTGGCTCTCATCTATCG-GTGCCGATGCCATGTCCTAGACA
65 CCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-AAT-GTG-GCCGATG-CATGTCCCAAACA
*
51899239 TGGTCTTACA-TTG-ACAC
126 T-GTCTTACACTAGCACAC
* * **
51899256 ATATCAAGCCGATGCCATGTCCCAGACATGGTCTTACACT-AGCT-TTCAGGTCT-TGAGG-CTG
1 ATATCAAGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTT-A--TATATCAGGACCA
51899317 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAAACAT
62 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAAACAT
51899382 GTCTTACACTAGCACAC
127 GTCTTACACTAGCACAC
51899399 ATATCA
1 ATATCA
51899405 CCCAAATGCC
Statistics
Matches: 129, Mismatches: 13, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
141 8 0.06
142 14 0.11
143 18 0.14
144 6 0.05
145 72 0.56
146 9 0.07
147 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (143 bp):
ATATCAAGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTTATATATCAGGACCAATGC
CATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAAACATGTCT
TACACTAGCACAC
Found at i:51899335 original size:50 final size:48
Alignment explanation
Indices: 51899120--51899394 Score: 213
Period size: 50 Copynumber: 5.7 Consensus size: 48
51899110 ATATCGAAGT
* * *
51899120 CGATGCCATGTCCCAGACATGGTCTTACACT-GACTCTTATATATCAGGAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTCATA-ATGAGG-C
* * * * * * *
51899170 CAATGCCCTGTCCTAGACATGGTTTTACACTGGCTCTCATCTATCG-GTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCAT-AAT-GAG-GC
* * * * * * *
51899220 CGATGCCATGTCCTAGACATGGTCTTACA-TTG-ACACAT-ATCAAGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGAGGC
* * **
51899265 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCAGGTCTTGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCA--TAATGAGGC
* * *
51899315 TGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGAGGC
51899363 CGATG-CATGTCCCAAACAT-GTCTTACACTAGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGC
51899395 ACACATATCA
Statistics
Matches: 183, Mismatches: 32, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
45 30 0.16
46 16 0.09
47 16 0.09
48 14 0.08
49 3 0.02
50 102 0.56
51 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGAGGC
Found at i:51903658 original size:29 final size:29
Alignment explanation
Indices: 51903601--51903658 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
51903591 TTGATATGTG
* *
51903601 ATGTGTGAGTAAGACCATGGCTTTGATAT
1 ATGTGTGAGTAAGACCATCGCTTTAATAT
51903630 ATGTGTGCAAGTAAGACCA-CG-TTTAATAT
1 ATGTGTG--AGTAAGACCATCGCTTTAATAT
51903659 GTTGGCATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 14 0.56
30 1 0.04
31 10 0.40
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (29 bp):
ATGTGTGAGTAAGACCATCGCTTTAATAT
Found at i:51903742 original size:43 final size:43
Alignment explanation
Indices: 51903695--51903789 Score: 127
Period size: 43 Copynumber: 2.2 Consensus size: 43
51903685 TATGTGTATG
* * *
51903695 AGTAAGACCCTGTTTGGGACAGTGGCATCGATATGCGATTACA
1 AGTAAGACCCTATCTGGGACAGTGGCAACGATATGCGATTACA
* * *
51903738 AGTAAAACCCTATCTGGGACAGTGGCAACGATATGTGATTATA
1 AGTAAGACCCTATCTGGGACAGTGGCAACGATATGCGATTACA
*
51903781 TGTAAGACC
1 AGTAAGACC
51903790 ACGTCAGGGA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (43 bp):
AGTAAGACCCTATCTGGGACAGTGGCAACGATATGCGATTACA
Found at i:51910256 original size:50 final size:50
Alignment explanation
Indices: 51910148--51910331 Score: 221
Period size: 50 Copynumber: 3.7 Consensus size: 50
51910138 AGATGCCGAC
* * * * *
51910148 GCCATATCCCAGACATGGTCTTACACT--CACTCATACATCAAATTTGAT
1 GCCATATCCCAGACATGGTCTTACACTGACTCTCATATATCGAAGTCGAT
* *
51910196 GCCATATCCCAGACATGGTCTTACATTGACTCTCATATATTGAAGTCGAT
1 GCCATATCCCAGACATGGTCTTACACTGACTCTCATATATCGAAGTCGAT
* * *
51910246 GCCATGTCCCAGACATGGTCTTACATTGACTCTCATATATCG-AGACCGAT
1 GCCATATCCCAGACATGGTCTTACACTGACTCTCATATATCGAAG-TCGAT
* * *
51910296 GCCATGTCCTAGACATGGTCTTACACTGGCTCTCAT
1 GCCATATCCCAGACATGGTCTTACACTGACTCTCAT
51910332 CTGTCGATGC
Statistics
Matches: 120, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
48 26 0.22
49 2 0.02
50 92 0.77
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (50 bp):
GCCATATCCCAGACATGGTCTTACACTGACTCTCATATATCGAAGTCGAT
Found at i:51913540 original size:43 final size:43
Alignment explanation
Indices: 51913479--51913565 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
51913469 CAGATACTTT
*
51913479 AGTATCTATCACATATGCAAGATAAGCATCATACCTTTTTCTA
1 AGTATCTATCACATATGCAAGATAAGCATCATACCCTTTTCTA
51913522 AGTATCTATCACATATGCAAGATAAGCATCATACCCTTTTCTA
1 AGTATCTATCACATATGCAAGATAAGCATCATACCCTTTTCTA
51913565 A
1 A
51913566 CATATTTCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (43 bp):
AGTATCTATCACATATGCAAGATAAGCATCATACCCTTTTCTA
Found at i:51917344 original size:28 final size:29
Alignment explanation
Indices: 51917311--51917409 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
51917301 ATAATAAGCC
* *
51917311 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
*
51917339 TGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* ** *
51917367 CGCACACTTAGTGC-TATACAATTTGAACC
1 CGCACACTTAGTGCTTATATAA-TCAAACT
51917396 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51917410 CGATCTCATG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 2 0.03
28 41 0.67
29 18 0.30
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:51919135 original size:42 final size:42
Alignment explanation
Indices: 51919055--51919138 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
51919045 TTAGGGTTGT
* * *
51919055 CACACGGCTAAGACACACGCCCGTGTTCTAGGCTGTGTGCCA
1 CACACGGCTAAGACACACGCCCGTGCTCTAGCCCGTGTGCCA
* *
51919097 CACACGGCTGAGACACACGCCTGTGCCTCTA-CCCGTGTGCCA
1 CACACGGCTAAGACACACGCCCGTG-CTCTAGCCCGTGTGCCA
51919139 AATTTTGAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
42 32 0.89
43 4 0.11
ACGTcount: A:0.20, C:0.37, G:0.25, T:0.18
Consensus pattern (42 bp):
CACACGGCTAAGACACACGCCCGTGCTCTAGCCCGTGTGCCA
Found at i:51931347 original size:39 final size:40
Alignment explanation
Indices: 51931292--51931451 Score: 227
Period size: 40 Copynumber: 4.0 Consensus size: 40
51931282 GATGATAACT
* *
51931292 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
51931332 -GGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
51931371 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
51931411 GGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
51931450 GG
1 GG
51931452 TTAAATCCTG
Statistics
Matches: 108, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 2 0.02
39 52 0.48
40 54 0.50
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:51931446 original size:79 final size:79
Alignment explanation
Indices: 51931292--51931451 Score: 236
Period size: 79 Copynumber: 2.0 Consensus size: 79
51931282 GATGATAACT
* *
51931292 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGCTAAGTCCCGAAGGCATTTGTAC
1 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACATCCGGCTAAGTCCCGAAGGCATTTGTAC
51931357 GAGCTACTATATCC
66 GAGCTACTATATCC
* *
51931371 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCA-TTG-A
1 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACATCC-GGCTAAGTCCCGAAGGCATTTGTA
51931434 GCGAG-TAGCTATATCC
65 -CGAGCTA-CTATATCC
51931450 GG
1 GG
51931452 TTAAATCCTG
Statistics
Matches: 74, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
78 3 0.04
79 54 0.73
80 17 0.23
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACATCCGGCTAAGTCCCGAAGGCATTTGTAC
GAGCTACTATATCC
Found at i:51931472 original size:79 final size:79
Alignment explanation
Indices: 51931292--51931472 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 79
51931282 GATGATAACT
* * * *
51931292 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGCTAAGTCCCGAAGGCATTTGTAC
1 GGGCTAAATCCCGAAGGAATTGGTGCGAGTTACTACATCCGGCTAAGTCCCGAAGGCATTTGTAC
51931357 GAGCTACTATATCC
66 GAGCTACTATATCC
* * * *
51931371 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCA-TTG-A
1 GGGCTAAATCCCGAAGGAATTGGTGCGAGTTACTACATCC-GGCTAAGTCCCGAAGGCATTTGTA
51931434 GCGAG-TAGCTATATCC
65 -CGAGCTA-CTATATCC
* *
51931450 -GGTTAAATCCTGAAGGTAATTGG
1 GGGCTAAATCCCGAAGG-AATTGG
51931473 CTTGGGAATG
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
78 16 0.18
79 57 0.63
80 17 0.19
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
GGGCTAAATCCCGAAGGAATTGGTGCGAGTTACTACATCCGGCTAAGTCCCGAAGGCATTTGTAC
GAGCTACTATATCC
Found at i:51934595 original size:27 final size:27
Alignment explanation
Indices: 51934557--51934622 Score: 132
Period size: 27 Copynumber: 2.4 Consensus size: 27
51934547 CTATATTAGT
51934557 GGCCTTGCCACGTTCTACCGTTCTAAC
1 GGCCTTGCCACGTTCTACCGTTCTAAC
51934584 GGCCTTGCCACGTTCTACCGTTCTAAC
1 GGCCTTGCCACGTTCTACCGTTCTAAC
51934611 GGCCTTGCCACG
1 GGCCTTGCCACG
51934623 CATTCTAACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.14, C:0.38, G:0.21, T:0.27
Consensus pattern (27 bp):
GGCCTTGCCACGTTCTACCGTTCTAAC
Found at i:51942397 original size:27 final size:24
Alignment explanation
Indices: 51942337--51942409 Score: 67
Period size: 27 Copynumber: 2.8 Consensus size: 24
51942327 GGAAGTACTG
51942337 CATTAGTGGCCTTGCCACGTTCTA
1 CATTAGTGGCCTTGCCACGTTCTA
*
51942361 CTGTTCTAGTGGCCTTGCCACGTATTCTGA
1 C--AT-TAGTGGCCTTGCCACG--TTCT-A
51942391 CATTAGTGG-CTATGCCACG
1 CATTAGTGGCCT-TGCCACG
51942410 ATTATTATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
24 1 0.03
26 3 0.08
27 29 0.73
28 1 0.03
29 4 0.10
30 2 0.05
ACGTcount: A:0.16, C:0.27, G:0.23, T:0.33
Consensus pattern (24 bp):
CATTAGTGGCCTTGCCACGTTCTA
Found at i:51944589 original size:21 final size:21
Alignment explanation
Indices: 51944565--51944604 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51944555 GCTCAAGTGC
*
51944565 CCGTATGGTCAAGGGACACGT
1 CCGTATAGTCAAGGGACACGT
*
51944586 CCGTGTAGTCAAGGGACAC
1 CCGTATAGTCAAGGGACAC
51944605 ACCTGTGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.25, G:0.33, T:0.17
Consensus pattern (21 bp):
CCGTATAGTCAAGGGACACGT
Found at i:51944612 original size:21 final size:21
Alignment explanation
Indices: 51944572--51944612 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
51944562 TGCCCGTATG
*
51944572 GTCAAGGGACACGTCCGTGTA
1 GTCAAGGGACACGACCGTGTA
51944593 GTCAAGGGACAC-ACCTGTGT
1 GTCAAGGGACACGACC-GTGT
51944613 GAGCATAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (21 bp):
GTCAAGGGACACGACCGTGTA
Found at i:51951911 original size:51 final size:51
Alignment explanation
Indices: 51951843--51951946 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
51951833 GCCTCTGTAG
*
51951843 CCGAACTTTGCTTTGATTCCATCGATCTCTATCCCTCCTTCATTTGCCGAC
1 CCGAACTTTACTTTGATTCCATCGATCTCTATCCCTCCTTCATTTGCCGAC
*
51951894 CCGAACTTTACTTTGATTCCATCGATCTCTTTCCCTCCTTCATTTGCCGAC
1 CCGAACTTTACTTTGATTCCATCGATCTCTATCCCTCCTTCATTTGCCGAC
51951945 CC
1 CC
51951947 TTATCTCTCT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.15, C:0.37, G:0.11, T:0.38
Consensus pattern (51 bp):
CCGAACTTTACTTTGATTCCATCGATCTCTATCCCTCCTTCATTTGCCGAC
Found at i:51952635 original size:16 final size:15
Alignment explanation
Indices: 51952616--51952650 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
51952606 ACAAAGGCTA
*
51952616 AAAAGTTAAAAAGCC
1 AAAAGGTAAAAAGCC
51952631 GAAAAGGTAAAAAGCC
1 -AAAAGGTAAAAAGCC
51952647 AAAA
1 AAAA
51952651 TATAGGTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.63, C:0.11, G:0.17, T:0.09
Consensus pattern (15 bp):
AAAAGGTAAAAAGCC
Found at i:51954765 original size:38 final size:37
Alignment explanation
Indices: 51954666--51954794 Score: 204
Period size: 37 Copynumber: 3.4 Consensus size: 37
51954656 TTATTACGAA
* *
51954666 GTCTTACCCGAACATAATCTCCACATGTAGTCATCGG
1 GTCTCACCCGAACATAATCTCCACACGTAGTCATCGG
* *
51954703 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTCACCCGAACATAATCTCCACACGTAGTCATCGG
51954740 GTCTCACCCAGAACATAATCTCCACACGTAGTCATCGG
1 GTCTCACCC-GAACATAATCTCCACACGTAGTCATCGG
51954778 GTCTCACCCGGAACATA
1 GTCTCACCC-GAACATA
51954795 TTTCCAAGTT
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
37 43 0.50
38 43 0.50
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (37 bp):
GTCTCACCCGAACATAATCTCCACACGTAGTCATCGG
Found at i:51954889 original size:48 final size:48
Alignment explanation
Indices: 51954834--51954985 Score: 232
Period size: 48 Copynumber: 3.2 Consensus size: 48
51954824 TATTACAACA
*
51954834 TTCACATTAGCCATTCAGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* ** * *
51954882 TTCACATTAGCCATTCGGCTTTACCACATACACATATCTTATATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
51954930 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
51954978 TTCACATT
1 TTCACATT
51954986 CATCACATCG
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 91 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:51955139 original size:51 final size:50
Alignment explanation
Indices: 51954977--51955220 Score: 447
Period size: 51 Copynumber: 4.9 Consensus size: 50
51954967 CACACATATA
51954977 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-ATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAATACAC
51955026 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-ATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAATACAC
*
51955075 TTTCACATTCATCACATCGGCCATTAGGCCATATCACATATATACATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ATACAC
51955126 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ATACAC
51955177 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
51955221 TATCTCATAC
Statistics
Matches: 191, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
49 91 0.48
51 100 0.52
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (50 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAATACAC
Found at i:51955162 original size:100 final size:100
Alignment explanation
Indices: 51954977--51955220 Score: 447
Period size: 100 Copynumber: 2.4 Consensus size: 100
51954967 CACACATATA
51954977 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-ATACACTTTCACATTCATCAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAATACACTTTCACATTCATCAC
51955041 ATCGGCCATTAGGCCTTATCACATATAT-ATACAC
66 ATCGGCCATTAGGCCTTATCACATATATAATACAC
*
51955075 TTTCACATTCATCACATCGGCCATTAGGCCATATCACATATATACATACACTTTCACATTCATCA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ATACACTTTCACATTCATCA
51955140 CATCGGCCATTAGGCCTTATCACATATATACATACAC
65 CATCGGCCATTAGGCCTTATCACATATATA-ATACAC
51955177 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
51955221 TATCTCATAC
Statistics
Matches: 140, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
98 42 0.30
100 49 0.35
102 49 0.35
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (100 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACATATATAATACAC
Found at i:51961608 original size:15 final size:16
Alignment explanation
Indices: 51961588--51961620 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
51961578 ATATATATTT
51961588 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
51961603 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
51961620 T
1 T
51961621 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:51961693 original size:21 final size:22
Alignment explanation
Indices: 51961667--51961725 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
51961657 GTTTTAAGAA
*
51961667 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
51961688 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
51961710 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
51961726 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:51961740 original size:26 final size:24
Alignment explanation
Indices: 51961696--51961744 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
51961686 ATTTGTTTTA
*
51961696 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
51961720 ATATTTGATTTATTATATTTTTAAA
1 ATATTTG-TTT-TTATATTTTTAAA
51961745 CTTTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:51963187 original size:20 final size:20
Alignment explanation
Indices: 51963162--51963251 Score: 146
Period size: 20 Copynumber: 4.5 Consensus size: 20
51963152 ACTACTATTC
*
51963162 CATTTACTTACTTTGCACTT
1 CATTTACTTACTTTCCACTT
*
51963182 CATTTACTTACTTTCCATTT
1 CATTTACTTACTTTCCACTT
51963202 CATTTACTTACTTTCCACTT
1 CATTTACTTACTTTCCACTT
51963222 CATTTACTTACTTTCCA-TT
1 CATTTACTTACTTTCCACTT
51963241 CTATTTACTTA
1 C-ATTTACTTA
51963252 GCATAGTCTT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
19 3 0.05
20 63 0.95
ACGTcount: A:0.21, C:0.26, G:0.01, T:0.52
Consensus pattern (20 bp):
CATTTACTTACTTTCCACTT
Found at i:51964494 original size:24 final size:24
Alignment explanation
Indices: 51964462--51964511 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
51964452 ATCAACATTA
51964462 TAATAATTACAGTTCATACAAACT
1 TAATAATTACAGTTCATACAAACT
51964486 TAATAATTACAGTTCATACAAACT
1 TAATAATTACAGTTCATACAAACT
51964510 TA
1 TA
51964512 CCTGACTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (24 bp):
TAATAATTACAGTTCATACAAACT
Found at i:51967165 original size:18 final size:18
Alignment explanation
Indices: 51967140--51967179 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
51967130 TTAACTTAAT
51967140 TTTA-ATTAGTAGTTCTA
1 TTTACATTAGTAGTTCTA
* *
51967157 TTTACATTATTATTTCTA
1 TTTACATTAGTAGTTCTA
51967175 TTTAC
1 TTTAC
51967180 CCATTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.28, C:0.10, G:0.05, T:0.57
Consensus pattern (18 bp):
TTTACATTAGTAGTTCTA
Found at i:51972097 original size:22 final size:21
Alignment explanation
Indices: 51972061--51972102 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
51972051 AGAGAGAAAA
51972061 AAAAGAAAAAAAAAGGACAAGG
1 AAAAGAAAAAAAAA-GACAAGG
* *
51972083 AAAAGAAAGATAAAGACAAG
1 AAAAGAAAAAAAAAGACAAG
51972103 AGATGTGCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.71, C:0.05, G:0.21, T:0.02
Consensus pattern (21 bp):
AAAAGAAAAAAAAAGACAAGG
Found at i:51973878 original size:28 final size:28
Alignment explanation
Indices: 51973838--51973893 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
51973828 TACATTCGAG
51973838 GTAAGTTCGTATGATAATAATACTGCAA
1 GTAAGTTCGTATGATAATAATACTGCAA
51973866 GTAAGTTCGTATGATAATAATACTGCAA
1 GTAAGTTCGTATGATAATAATACTGCAA
51973894 TGTTATGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (28 bp):
GTAAGTTCGTATGATAATAATACTGCAA
Found at i:51976782 original size:14 final size:14
Alignment explanation
Indices: 51976763--51976789 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51976753 GATCACGTAG
51976763 ATAGTGATACTAAT
1 ATAGTGATACTAAT
51976777 ATAGTGATACTAA
1 ATAGTGATACTAA
51976790 AGTATTTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.33
Consensus pattern (14 bp):
ATAGTGATACTAAT
Found at i:51982175 original size:15 final size:15
Alignment explanation
Indices: 51982155--51982189 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
51982145 GGATGTGGTA
51982155 TATAATGTTTTGGCT
1 TATAATGTTTTGGCT
51982170 TATAATGTTTTGGCT
1 TATAATGTTTTGGCT
51982185 TATAA
1 TATAA
51982190 GCCTAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.26, C:0.06, G:0.17, T:0.51
Consensus pattern (15 bp):
TATAATGTTTTGGCT
Found at i:51984518 original size:68 final size:68
Alignment explanation
Indices: 51984409--51984678 Score: 267
Period size: 68 Copynumber: 4.0 Consensus size: 68
51984399 ACCATCCTGC
* ** * *
51984409 AGACTCCATATGTTGCCATAGTTGATTTATGGTCTTACACATTGTAACCCTATATTTATTGTCCT
1 AGACTCCATATGTTGCCATAGCTGAGCTATGGTCTTACACATTGTAACCCCATGTTTATTGTCCT
51984474 GGT
66 GGT
* * * * * * *
51984477 AGACTCTATATATTGCTATAGTTGAGCTATAGTCTTACACATTATAACCCCATGTTTAATG-CCT
1 AGACTCCATATGTTGCCATAGCTGAGCTATGGTCTTACACATTGTAACCCCATGTTTATTGTCCT
51984541 CGGT
66 -GGT
* * * * * *
51984545 GGATTCTATATGTTGCCATAGCCGAGCTATGG-CTTTACAAATTGTAACCCCATGTCTATTGTCC
1 AGACTCCATATGTTGCCATAGCTGAGCTATGGTC-TTACACATTGTAACCCCATGTTTATTGTCC
*
51984609 TGGC
65 TGGT
* ** * * * *
51984613 GGACTCCATATGTTGTTATACCTGAGCTATGGTATTACATATTGTAACCCC-TGTTTATTATCCT
1 AGACTCCATATGTTGCCATAGCTGAGCTATGGTCTTACACATTGTAACCCCATGTTTATTGTCCT
51984677 GG
66 GG
51984679 GGCACTTCAG
Statistics
Matches: 166, Mismatches: 32, Indels: 9
0.80 0.15 0.04
Matches are distributed among these distances:
67 17 0.10
68 146 0.88
69 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (68 bp):
AGACTCCATATGTTGCCATAGCTGAGCTATGGTCTTACACATTGTAACCCCATGTTTATTGTCCT
GGT
Found at i:51984661 original size:136 final size:135
Alignment explanation
Indices: 51984416--51984669 Score: 312
Period size: 136 Copynumber: 1.9 Consensus size: 135
51984406 TGCAGACTCC
** ** * * * *
51984416 ATATGTTGCCATAGTTGATTTATGGTCTTACACATTGTAACCCTATATTTATTGTCCTGGTAGAC
1 ATATGTTGCCATAGCCGAGCTATGGTCTTACAAATTGTAACCCCATATCTATTGTCCTGGCAGAC
* ** *
51984481 TCTATATATTGCTATAGTTGAGCTATAGTCTTACACATTATAACCCCATGTTTAATGCCTCGGTG
66 TCCATATATTGCTATACCTGAGCTATAGTATTACACATTATAACCCC-TGTTTAATGCCTCGGTG
51984546 GATTCT
130 GATTCT
* *
51984552 ATATGTTGCCATAGCCGAGCTATGG-CTTTACAAATTGTAACCCCATGTCTATTGTCCTGGCGGA
1 ATATGTTGCCATAGCCGAGCTATGGTC-TTACAAATTGTAACCCCATATCTATTGTCCTGGCAGA
* * * * *
51984616 CTCCATATGTTGTTATACCTGAGCTATGGTATTACATATTGTAACCCCTGTTTA
65 CTCCATATATTGCTATACCTGAGCTATAGTATTACACATTATAACCCCTGTTTA
51984670 TTATCCTGGG
Statistics
Matches: 98, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
135 7 0.07
136 91 0.93
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.38
Consensus pattern (135 bp):
ATATGTTGCCATAGCCGAGCTATGGTCTTACAAATTGTAACCCCATATCTATTGTCCTGGCAGAC
TCCATATATTGCTATACCTGAGCTATAGTATTACACATTATAACCCCTGTTTAATGCCTCGGTGG
ATTCT
Found at i:51992356 original size:32 final size:35
Alignment explanation
Indices: 51992320--51992386 Score: 86
Period size: 36 Copynumber: 2.0 Consensus size: 35
51992310 CCAAAAGTTT
*
51992320 AAACATGC-TCTTA-TG-AAATACTCAACTTGAAC
1 AAACATGCATCTTAGGGTAAATACTCAACTTGAAC
*
51992352 AAACATGCAGTTTTAGGGTAAATACTCAACTTGAA
1 AAACATGCA-TCTTAGGGTAAATACTCAACTTGAA
51992387 TATCTTTTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 8 0.28
34 4 0.14
35 1 0.03
36 16 0.55
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.28
Consensus pattern (35 bp):
AAACATGCATCTTAGGGTAAATACTCAACTTGAAC
Found at i:51994012 original size:35 final size:35
Alignment explanation
Indices: 51993972--51994130 Score: 156
Period size: 35 Copynumber: 4.5 Consensus size: 35
51993962 GTATGTACAT
51993972 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * * *
51994007 ATGTGATGTTATATTAAACTTGAATATATGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * ** * *
51994042 ATGTGATGTTTTATTGAGCTTGTATATTCAGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
** * *
51994077 ATACGATGATATATTGTACTTGTATATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
*
51994112 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
51994131 CTTGAGCATT
Statistics
Matches: 94, Mismatches: 30, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
35 94 1.00
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:51996002 original size:79 final size:82
Alignment explanation
Indices: 51995862--51996046 Score: 204
Period size: 79 Copynumber: 2.3 Consensus size: 82
51995852 TTGAATGATG
* * *
51995862 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCAGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCAGACTAAGATCCGAAGGCATT
51995926 CGTACGAGAT-AATA-AA
66 CGTACGAG-TCAATATAA
* * **
51995942 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCAGACTAAGAT-CCGAAGGCAT
* *
51996004 TCGTGCGAGTCACTATAA
65 TCGTACGAGTCAATATAA
**
51996022 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51996047 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
78 2 0.02
79 53 0.60
80 34 0.38
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCAGACTAAGATCCGAAGGCATT
CGTACGAGTCAATATAA
Found at i:51996003 original size:40 final size:40
Alignment explanation
Indices: 51995862--51996046 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 40
51995852 TTGAATGATG
* *
51995862 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * * * * *
51995902 TCCAGACTAGGAT-CCGAAGGCATTCGTACGAGATAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
51995942 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
51995981 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
51996022 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51996047 AGCGAGTCGT
Statistics
Matches: 113, Mismatches: 27, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
39 31 0.27
40 74 0.65
41 8 0.07
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:52005967 original size:16 final size:17
Alignment explanation
Indices: 52005936--52005971 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
52005926 TAAAAAAAAG
52005936 TTTGGGATTTCAGGATT
1 TTTGGGATTTCAGGATT
*
52005953 TTTGGG-TTTCGGGATT
1 TTTGGGATTTCAGGATT
52005969 TTT
1 TTT
52005972 AGGGCGTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.11, C:0.06, G:0.31, T:0.53
Consensus pattern (17 bp):
TTTGGGATTTCAGGATT
Found at i:52010486 original size:68 final size:67
Alignment explanation
Indices: 52010414--52010563 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
52010404 CATCATGTGT
* * * *
52010414 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
52010476 ATGTAG
62 ATGTAG
** * *
52010482 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
52010547 AG
66 AG
52010549 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
52010564 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:52010519 original size:64 final size:64
Alignment explanation
Indices: 52010438--52010621 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
52010428 AGACATTATG
* *
52010438 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
52010502 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
52010567 AA
63 AA
* * * *
52010569 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
52010622 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:52012474 original size:29 final size:29
Alignment explanation
Indices: 52012424--52012527 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
52012414 GGCCCTCTAA
* * * *
52012424 GCCC-AATCATATTCATAGGGCCCACTAG
1 GCCCAAATCACATTTATATGGCCCATTAG
52012452 GCCCAAATCAC-TTGTATATGGCCCATTAG
1 GCCCAAATCACATT-TATATGGCCCATTAG
*
52012481 GCCCAAATCACATTTATATGGCCCGTTAG
1 GCCCAAATCACATTTATATGGCCCATTAG
* *
52012510 GCCC-AGTCACATTCATAT
1 GCCCAAATCACATTTATAT
52012528 TCATGCTCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
28 18 0.27
29 46 0.70
30 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
GCCCAAATCACATTTATATGGCCCATTAG
Found at i:52019577 original size:78 final size:80
Alignment explanation
Indices: 52019445--52019622 Score: 240
Period size: 78 Copynumber: 2.3 Consensus size: 80
52019435 AATGATGTCT
*
52019445 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTG
*
52019510 CGAGTTACTA-ATTCC
66 CGAGTTACTATA-ACC
* * **
52019525 GGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTGT
52019587 GCGAGTTACTATAACC
65 GCGAGTTACTATAACC
*
52019603 -GGCTATGTCCCGAAGGCATT
1 GGGCTAAGTCCCGAAGGCATT
52019623 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
77 7 0.08
78 57 0.65
79 16 0.18
80 8 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTG
CGAGTTACTATAACC
Found at i:52019623 original size:39 final size:40
Alignment explanation
Indices: 52019445--52019624 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
52019435 AATGATGTCT
* *
52019445 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
* *
52019485 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
52019525 GGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
52019563 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
52019603 -GGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
52019625 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
38 26 0.21
39 39 0.31
40 50 0.40
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:52019646 original size:78 final size:78
Alignment explanation
Indices: 52019445--52019657 Score: 222
Period size: 78 Copynumber: 2.7 Consensus size: 78
52019435 AATGATGTCT
* * * **
52019445 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTGT
1 GGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGT
*
52019509 GCGAGTTACTAATTCC
63 GCGAGTTACTAATACC
*
52019525 GGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCG
52019590 AGTTACT-ATAACC
66 AGTTACTAAT-ACC
* * *
52019603 -GGCTATGTCCCGAAGGCATT-TGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 GGGCTAAG-CCCGAAGGCATTGTG--CGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
52019658 TACGTGATTC
Statistics
Matches: 116, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
77 11 0.09
78 71 0.61
79 26 0.22
80 8 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
GGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCG
AGTTACTAATACC
Found at i:52019655 original size:39 final size:37
Alignment explanation
Indices: 52019449--52019657 Score: 147
Period size: 39 Copynumber: 5.4 Consensus size: 37
52019439 ATGTCTGGGC
* * * * *
52019449 TAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGAC
1 TAAGTCCCGAAGGCATT-TGC-GAGTTACTATATCCGG-T
*
52019489 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAG-TCCCGAAGGCA-TT-TGCGAGTTACTATA-TCC-GGT
*
52019529 TAAG-CCCGAAGGCATTGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATT-TGCGAGTTACTATATCC-GGT
* *
52019567 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGC
1 TAAGTCCCGAAGGCA-TT-TGCGAGTTACTATATCCGGT
*
52019606 TATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGT
1 TAAGTCCCGAAGGCATTTG--CGAGTTA-CTATATCCGGT
* *
52019645 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
52019658 TACGTGATTC
Statistics
Matches: 145, Mismatches: 13, Indels: 23
0.80 0.07 0.13
Matches are distributed among these distances:
37 2 0.01
38 29 0.20
39 60 0.41
40 45 0.31
41 9 0.06
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (37 bp):
TAAGTCCCGAAGGCATTTGCGAGTTACTATATCCGGT
Found at i:52035898 original size:40 final size:40
Alignment explanation
Indices: 52035796--52035979 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
52035786 AAATTGAATG
* * * * *
52035796 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
52035836 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
52035876 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
52035916 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
52035956 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
52035980 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:52036004 original size:80 final size:80
Alignment explanation
Indices: 52035838--52036024 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 80
52035828 TGAAAATTAT
* * *
52035838 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
* *
52035903 CGTGCAAGTTGTTAA
66 CGTGCAAGTTATCAA
* * * * * *
52035918 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGGCAT
* **
52035982 TGGTGCGGGTTATCATA
65 TCGTGCAAGTTATCA-A
* * *
52035999 A-CCGGGCTATGTCCCGAAGGCGATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
52036025 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 84 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTATCAA
Found at i:52041212 original size:43 final size:43
Alignment explanation
Indices: 52041146--52041278 Score: 119
Period size: 43 Copynumber: 3.1 Consensus size: 43
52041136 AGCTCATACA
* * * *
52041146 ATGCCAATGTCCCATACATGGTCTTACATGTAATCAAATATTG
1 ATGCCAATATCCAAGACAGGGTCTTACATGTAATCAAATATTG
* * *
52041189 ATGCCACTATCCAAGACAGGGTCTTACATG-AACTCATATA-CG
1 ATGCCAATATCCAAGACAGGGTCTTACATGTAA-TCAAATATTG
* * * *
52041231 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAA-ATTG
1 ATGCCAATATCCAAGACAGGGTCTTACATGT-AATCA-AATATTG
52041275 ATGC
1 ATGC
52041279 TAACGTCCCT
Statistics
Matches: 71, Mismatches: 14, Indels: 9
0.76 0.15 0.10
Matches are distributed among these distances:
42 28 0.39
43 35 0.49
44 8 0.11
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATATCCAAGACAGGGTCTTACATGTAATCAAATATTG
Found at i:52041248 original size:42 final size:42
Alignment explanation
Indices: 52041141--52041263 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 42
52041131 TGGAAAGCTC
* *
52041141 ATACAATGCCAATGTCCCATACATGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACATGTAATCAA
* * * * * *
52041183 ATATTGATGCCACTATCCAAGACAGGGTCTTACATG-AACTCAT
1 ATA-CGATGCCAATGTCCCAGACATGGTCTTACATGTAA-TCAA
*
52041226 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACATGTAA
52041264 ATCACAAATT
Statistics
Matches: 64, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
42 31 0.48
43 33 0.52
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.27
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACATGTAATCAA
Found at i:52041297 original size:44 final size:43
Alignment explanation
Indices: 52041146--52041312 Score: 115
Period size: 43 Copynumber: 3.9 Consensus size: 43
52041136 AGCTCATACA
* * ***
52041146 ATGCCAATGTCCCATACATGGTCTTACATGTAATCA-AATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACAAAATCACAA-ATTG
* * * ** * * * *
52041189 ATGCC-ACTATCCAAGACAGGGTCTTACATGAACTCATATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACAAAATCACAAATTG
* *
52041231 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATTG
1 ATGCCAACGTCCCAGACATGGTCTTACAC-AAAATCACAAATTG
* * *
52041275 ATGCTAACGTCCCTGACGTGGTCTTACACAAAATCACA
1 ATGCCAACGTCCCAGACATGGTCTTACACAAAATCACA
52041313 TGTCAGAATC
Statistics
Matches: 95, Mismatches: 24, Indels: 10
0.74 0.19 0.08
Matches are distributed among these distances:
42 24 0.25
43 44 0.46
44 27 0.28
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACAAAATCACAAATTG
Found at i:52043688 original size:33 final size:33
Alignment explanation
Indices: 52043651--52043715 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
52043641 CTTAGGCCCA
* *
52043651 TACTGTTACGGTATAGGGCTAAGGCCCAGATTG
1 TACTGTTACGGAATAGGGCCAAGGCCCAGATTG
* *
52043684 TACTGTTACTGAATAGGGCCCAGGCCCAGATT
1 TACTGTTACGGAATAGGGCCAAGGCCCAGATT
52043716 ATTACTGTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (33 bp):
TACTGTTACGGAATAGGGCCAAGGCCCAGATTG
Found at i:52046263 original size:79 final size:81
Alignment explanation
Indices: 52046162--52046342 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 81
52046152 ACAACTCGCT
** *
52046162 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGA-CTCGCACGAAAGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TA-TGACCTCGCACGAAAGCCTT-GGGATCCTAACC
* *
52046224 CGGGTTTAGTAACTT-GCA
63 CGGATATAGTAACTTAGCA
* * * **
52046242 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTACCTCGCACGAATGCCTTTGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTATGACCTCGCACGAAAGCCTTGGGATCCTAACCCGG
*
52046306 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
52046322 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
52046343 TGGACATCAT
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
78 5 0.06
79 50 0.59
80 30 0.35
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTATGACCTCGCACGAAAGCCTTGGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:52046287 original size:39 final size:40
Alignment explanation
Indices: 52046154--52046290 Score: 136
Period size: 40 Copynumber: 3.5 Consensus size: 40
52046144 AGGATATAAC
* * *
52046154 AACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGG-TTATAGT
1 AACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGT
* * *
52046194 GACTCGCACGAAAGCCTTCGGGACTTAACCCGGGTTTAGT
1 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGT
* * * *
52046234 AACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATT
1 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGT
*
52046273 ACCTCGCACGAATGCCTT
1 AACTCGCACGAATGCCTT
52046291 TGGATCCTAG
Statistics
Matches: 80, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
39 29 0.36
40 47 0.59
41 4 0.05
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGT
Found at i:52050154 original size:13 final size:13
Alignment explanation
Indices: 52050136--52050166 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
52050126 GGTTTTCTTT
52050136 TCTCTCTTTTTCC
1 TCTCTCTTTTTCC
52050149 TCTCTCTTTTTCC
1 TCTCTCTTTTTCC
52050162 TCTCT
1 TCTCT
52050167 ACCCGAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (13 bp):
TCTCTCTTTTTCC
Found at i:52072132 original size:42 final size:43
Alignment explanation
Indices: 52072033--52072177 Score: 145
Period size: 44 Copynumber: 3.4 Consensus size: 43
52072023 CCAACGTCCT
* * *
52072033 AGACATGGTCTTACATGTAATCAAATATTGATGCCACTATCCC
1 AGACATGGTCTTACACGTAATCAAATATCGATGCCAATATCCC
* * * *
52072076 AGATA-GGATTTTACACG-AACTCATATA-CGATGCCAATTTCCC
1 AGACATGG-TCTTACACGTAA-TCAAATATCGATGCCAATATCCC
*
52072118 AGACATGGTCTTACACGTAAATCACAA-ATCGATGCCAACATCCC
1 AGACATGGTCTTACACGT-AATCA-AATATCGATGCCAATATCCC
*
52072162 AGACGTGGTCTTACAC
1 AGACATGGTCTTACAC
52072178 AAAATCACAT
Statistics
Matches: 82, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
42 28 0.34
43 23 0.28
44 31 0.38
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (43 bp):
AGACATGGTCTTACACGTAATCAAATATCGATGCCAATATCCC
Found at i:52072162 original size:44 final size:44
Alignment explanation
Indices: 52072021--52072186 Score: 139
Period size: 43 Copynumber: 3.9 Consensus size: 44
52072011 GCTCGTACAT
* * * *
52072021 TGCCAACGTCCTAGACATGGTCTTACATGT-AATCA-AATATTGA
1 TGCCAACATCCCAGACATGGTCTTACACGTAAATCACAA-ATCGA
* * * * *
52072064 TGCC-ACTATCCCAGATA-GGATTTTACACG-AACTCATATA-CGA
1 TGCCAAC-ATCCCAGACATGG-TCTTACACGTAAATCACAAATCGA
**
52072106 TGCCAATTTCCCAGACATGGTCTTACACGTAAATCACAAATCGA
1 TGCCAACATCCCAGACATGGTCTTACACGTAAATCACAAATCGA
* *
52072150 TGCCAACATCCCAGACGTGGTCTTACAC-AAAATCACA
1 TGCCAACATCCCAGACATGGTCTTACACGTAAATCACA
52072187 TTTCGAAATC
Statistics
Matches: 96, Mismatches: 19, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
42 26 0.27
43 41 0.43
44 29 0.30
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (44 bp):
TGCCAACATCCCAGACATGGTCTTACACGTAAATCACAAATCGA
Found at i:52075244 original size:27 final size:27
Alignment explanation
Indices: 52075096--52075290 Score: 175
Period size: 27 Copynumber: 7.3 Consensus size: 27
52075086 GTAGGGAAAA
*
52075096 TCAGTCATTTTA-CCTAACAGGGGTATT
1 TCAGTCATTTTACCCT-ATAGGGGTATT
* *
52075123 ACAGTCATTTTACCTTATA-GGGTAATT
1 TCAGTCATTTTACCCTATAGGGGT-ATT
* * * *
52075150 AT-AGACAATTTACCATA-AAGGGTATT
1 -TCAGTCATTTTACCCTATAGGGGTATT
* *
52075176 ACAGTCATTTTACCCTACAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
*
52075203 TCAGTCATTTTACCCTATGGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
* * *
52075230 TCATTCATTTTACCCTATGGGGGAATT
1 TCAGTCATTTTACCCTATAGGGGTATT
* *
52075257 TC-GATCATTTTACCTTATAGGGGTTTT
1 TCAG-TCATTTTACCCTATAGGGGTATT
*
52075284 TCGGTCA
1 TCAGTCA
52075291 CCATTTTGGC
Statistics
Matches: 138, Mismatches: 22, Indels: 16
0.78 0.12 0.09
Matches are distributed among these distances:
26 20 0.14
27 115 0.83
28 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.38
Consensus pattern (27 bp):
TCAGTCATTTTACCCTATAGGGGTATT
Found at i:52078516 original size:26 final size:25
Alignment explanation
Indices: 52078487--52078544 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
52078477 CATACACATC
*
52078487 ATAGGGCAAATCAGTCATTTTACCTT
1 ATAGGG-AAATCAGTCATTTTACCAT
* *
52078513 ATAGGTGTATTCAGTCATTTTACCAT
1 ATAGG-GAAATCAGTCATTTTACCAT
52078539 ATAGGG
1 ATAGGG
52078545 GTATTTCAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 26 0.93
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (25 bp):
ATAGGGAAATCAGTCATTTTACCAT
Found at i:52078560 original size:27 final size:27
Alignment explanation
Indices: 52078497--52078705 Score: 221
Period size: 27 Copynumber: 7.8 Consensus size: 27
52078487 ATAGGGCAAA
* *
52078497 TCAGTCATTTTACCTTATAGGTGTA-T
1 TCAGTCATTTTACCCTATAGGGGTATT
*
52078523 TCAGTCATTTTACCATATAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
* * * * *
52078550 TCAGTTATTTTACACTACAGTGGTATC
1 TCAGTCATTTTACCCTATAGGGGTATT
*
52078577 TCGGTCATTTTACCCTATAGGGGTATTT
1 TCAGTCATTTTACCCTATAGGGGTA-TT
*
52078605 TC-TTCATTTTACCCTAT-GGAGGTATT
1 TCAGTCATTTTACCCTATAGG-GGTATT
52078631 TCAGTCA-TTTA-CCTATAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
* * * *
52078656 TCGGTCATTTTATCCTATGGGGGTATA
1 TCAGTCATTTTACCCTATAGGGGTATT
*
52078683 TCGGTCATTTTACCCTATCAGGG
1 TCAGTCATTTTACCCTAT-AGGG
52078706 TACTTCGGTC
Statistics
Matches: 154, Mismatches: 21, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
25 17 0.11
26 39 0.25
27 92 0.60
28 6 0.04
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.42
Consensus pattern (27 bp):
TCAGTCATTTTACCCTATAGGGGTATT
Found at i:52078681 original size:106 final size:108
Alignment explanation
Indices: 52078501--52078705 Score: 276
Period size: 106 Copynumber: 1.9 Consensus size: 108
52078491 GGCAAATCAG
* * *
52078501 TCATTTTACCTTATAGGTGTATTCAGTCATTTTACCATATAGGGGTATTTCAGTTATTTTACACT
1 TCATTTTACCCTATAGGTATATTCAGTCATTTTACCATATAGGGGTATTTCAGTCATTTTACACT
* *
52078566 ACAGTGGTATCTCGGTCATTTTACCCTAT-AGGGGTATTTTCT
66 ACAGGGGTATATCGGTCATTTTACCCTATCAGGGGTATTTTCT
*
52078608 TCATTTTACCCTATGGAGGTAT-TTCAGTCA-TTTACC-TATAGGGGTATTTCGGTCATTTTATC
1 TCATTTTACCCTAT--AGGTATATTCAGTCATTTTACCATATAGGGGTATTTCAGTCATTTTA-C
**
52078670 -CTATGGGGGTATATCGGTCATTTTACCCTATCAGGG
63 ACTACAGGGGTATATCGGTCATTTTACCCTATCAGGG
52078706 TACTTCGGTC
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
106 49 0.57
107 24 0.28
108 8 0.09
109 5 0.06
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (108 bp):
TCATTTTACCCTATAGGTATATTCAGTCATTTTACCATATAGGGGTATTTCAGTCATTTTACACT
ACAGGGGTATATCGGTCATTTTACCCTATCAGGGGTATTTTCT
Found at i:52082502 original size:6 final size:6
Alignment explanation
Indices: 52082491--52082562 Score: 76
Period size: 6 Copynumber: 11.8 Consensus size: 6
52082481 AACCAAAATG
* *
52082491 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAACC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
*
52082539 ACGTGA-C AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
52082563 GTGAATGCAA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
5 3 0.05
6 47 0.85
7 4 0.07
8 1 0.02
ACGTcount: A:0.49, C:0.17, G:0.18, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:52082716 original size:27 final size:26
Alignment explanation
Indices: 52082679--52082744 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
52082669 AGCATGGCTG
* *
52082679 CCAGAACAGATATCGTGATAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
52082705 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
52082732 CCAGAATCAGATA
1 CCAGAA-CAGATA
52082745 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:52082749 original size:27 final size:27
Alignment explanation
Indices: 52082698--52082752 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
52082688 ATATCGTGAT
* *
52082698 AGAGTCACCAGATACAGATATTGTGGC
1 AGAGCCACCAGATACAGATAATGTGGC
52082725 AGAGCCACCAGA-ATCAGATAATGTGGC
1 AGAGCCACCAGATA-CAGATAATGTGGC
52082752 A
1 A
52082753 AACCCACCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.18
Consensus pattern (27 bp):
AGAGCCACCAGATACAGATAATGTGGC
Found at i:52082759 original size:27 final size:27
Alignment explanation
Indices: 52082703--52082760 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
52082693 GTGATAGAGT
* * *
52082703 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
52082730 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
52082757 CACC
1 CACC
52082761 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:52082965 original size:22 final size:22
Alignment explanation
Indices: 52082917--52082975 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
52082907 GTAAATACGT
*
52082917 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
52082939 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
52082961 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
52082976 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:52083142 original size:27 final size:26
Alignment explanation
Indices: 52083063--52083145 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
52083053 TCGATCGGTC
* * *
52083063 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
52083089 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
52083116 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
52083143 AAC
1 AAC
52083146 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:52083374 original size:27 final size:27
Alignment explanation
Indices: 52083344--52083540 Score: 234
Period size: 27 Copynumber: 7.3 Consensus size: 27
52083334 GGGGCAAAAT
* * *
52083344 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAGGGGTATTTC
52083371 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
52083398 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* * *
52083425 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
* * * *
52083452 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
52083479 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
52083506 GGAAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
52083533 AGTAATTT
1 GGTAATTT
52083541 CATAATTAAG
Statistics
Matches: 146, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 4 0.03
27 139 0.95
28 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:52083583 original size:27 final size:27
Alignment explanation
Indices: 52083549--52083980 Score: 521
Period size: 27 Copynumber: 16.0 Consensus size: 27
52083539 TTCATAATTA
* *
52083549 AGGGTAAAACAGTAATTCTGCAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * *
52083576 AGGGTAAAACGATAATTTTGTAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * *
52083603 AGGGTAAACCAGTAATTCTGTAAATCA
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * **
52083630 AGGGTAAAACGATAATTTTACAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
52083657 AGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
52083684 AGGGTAAAACAGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
* *
52083711 AGGGTAAAATGGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
52083738 AGGGTAAAACGGTAATTCTGT-AACCTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
52083765 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* **
52083792 AGGGTAAAACGGTAATTTTACAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
52083819 AGAGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
**
52083846 AGGGTAAAATAGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
*
52083873 AAGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * *
52083900 AGGGTAAAACAGAAATTCTATAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
52083927 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
52083954 AGGGTAAAACGGAAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
52083981 GGAGTACTTT
Statistics
Matches: 343, Mismatches: 54, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.02
27 331 0.97
28 6 0.02
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTGTAAATCG
Found at i:52087218 original size:29 final size:29
Alignment explanation
Indices: 52087156--52087258 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
52087146 GTGACGAGAT
* * *
52087156 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
52087185 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
52087214 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
52087243 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
52087259 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:52092180 original size:29 final size:30
Alignment explanation
Indices: 52092148--52092207 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
52092138 TTCCCGAGCC
52092148 TAGGGG-AAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
52092177 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
52092207 T
1 T
52092208 GAGTAAAGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Done.