Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 191 of 292
Found at i:56973246 original size:55 final size:54
Alignment explanation
Indices: 56973072--56973284 Score: 178
Period size: 55 Copynumber: 3.8 Consensus size: 54
56973062 AACAAAGCTA
* * * *
56973072 TAAAATCTGAATAATAGGGGCAAAACTATAAAATCTGAAAAAAATAGAGGGAAAGTG
1 TAAAATCTGAA-AATATGGACAAAACTATAAAATCT--AAAAAATAGAGGAAAACTG
* ** * * *
56973129 TAAAATCTAAAAAATATGGGGAAAACTATAAAATCTAAAAATTA-AGGGTAAAATTA
1 TAAAATCT-GAAAATATGGACAAAACTATAAAATCTAAAAAATAGA-GG-AAAACTG
* *
56973185 TAAAATCTGAAAATATGGACAAAATTATAAAATCTAAAAGAATAGAAGAAAACTG
1 TAAAATCTGAAAATATGGACAAAACTATAAAATCTAAAA-AATAGAGGAAAACTG
* * ***
56973240 TCAAATCT-AAAAAATAGAGACAAGTTTATAAAATCTAAAAAATAG
1 TAAAATCTGAAAATAT-G-GACAAAACTATAAAATCTAAAAAATAG
56973285 GAAATATATC
Statistics
Matches: 130, Mismatches: 19, Indels: 16
0.79 0.12 0.10
Matches are distributed among these distances:
54 7 0.05
55 54 0.42
56 36 0.28
57 31 0.24
58 2 0.02
ACGTcount: A:0.56, C:0.07, G:0.14, T:0.23
Consensus pattern (54 bp):
TAAAATCTGAAAATATGGACAAAACTATAAAATCTAAAAAATAGAGGAAAACTG
Found at i:56976184 original size:243 final size:245
Alignment explanation
Indices: 56975756--56976227 Score: 641
Period size: 243 Copynumber: 1.9 Consensus size: 245
56975746 GGCTTATTTT
* * *
56975756 AAGTTAATCGAGAAGAAAGGATCATGTCCCGTAAGTTAGGACACAACGCCTAAAATCCTCGAAAA
1 AAGTTAATCGAGAAGAAAGAATCATGTCCCGTAAGTTAGGACACAACACCTAAAATCCTCAAAAA
* *
56975821 CGAGAACAAACGCTAAAATCTATTCTTCTTTTTTTAAAGTAGATATTCAACTATCTCGTTTTAGA
66 CGAGAACAAACGCTAAAATCTATTCTTCTTTTTTTAAAATAGACATTCAACTATCTCGTTTTAGA
* * * * *
56975886 AAGAAGCCATATTCTGTAAGTTAGGAACGCAACTCTTTTTAATTACAAAAATAATGAATA-TTGT
131 AAGAAGCCATATTCCGTAAGTTAGGAACACAACTCTTTCTAATTACAAAAATAATGAACATTTGC
* *
56975950 TTTGATAAAAAAAATTT-CTTTTTTATGCATCGTGCGAAAACGAACGTTC
196 CTTAATAAAAAAAATTTCCTTTTTTATGCATCGTGCGAAAACGAACGTTC
*
56975999 AAGTTAATCGAGAAGAAAGAATCATGTCCCGTAAGTTAGGACACAACACCTTAAATCCTCAAAAA
1 AAGTTAATCGAGAAGAAAGAATCATGTCCCGTAAGTTAGGACACAACACCTAAAATCCTCAAAAA
* * * * *
56976064 CGAGAACAAATGCTAAAATCT-TCTTTTTTTTATTTTAAAATAGACATTCGATTATCTCGATTTT
66 CGAGAACAAACGCTAAAATCTAT-TCTTCTTT-TTTTAAAATAGACATTCAACTATCTCG-TTTT
* * * *
56976128 AG-AAGAAATCCATATTCCGTAAGTTAGGGACACGACT-TTTCTAATTTC-AAAATAATGAACAT
128 AGAAAG-AAGCCATATTCCGTAAGTTAGGAACACAACTCTTTCTAATTACAAAAATAATGAACAT
** *
56976190 TTGCCTTAATTTAAAAAATTTCCTTTTTTGTGCATCGT
192 TTGCCTTAATAAAAAAAATTTCCTTTTTTATGCATCGT
56976228 ATCAAAAATA
Statistics
Matches: 198, Mismatches: 25, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
242 1 0.01
243 99 0.50
244 51 0.26
245 47 0.24
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (245 bp):
AAGTTAATCGAGAAGAAAGAATCATGTCCCGTAAGTTAGGACACAACACCTAAAATCCTCAAAAA
CGAGAACAAACGCTAAAATCTATTCTTCTTTTTTTAAAATAGACATTCAACTATCTCGTTTTAGA
AAGAAGCCATATTCCGTAAGTTAGGAACACAACTCTTTCTAATTACAAAAATAATGAACATTTGC
CTTAATAAAAAAAATTTCCTTTTTTATGCATCGTGCGAAAACGAACGTTC
Found at i:56976363 original size:4 final size:4
Alignment explanation
Indices: 56976354--56976428 Score: 71
Period size: 4 Copynumber: 19.0 Consensus size: 4
56976344 ATTAAAAAAG
* * * * *
56976354 TAAA TAAA TAAA GAAA T-GA TAAA TAAA TAGA TAAA TAAA TAGA TAGA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
* * *
56976401 TAAA TAAA CAAA CAAA CAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
56976429 AACATTTGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
3 2 0.03
4 58 0.97
ACGTcount: A:0.69, C:0.04, G:0.07, T:0.20
Consensus pattern (4 bp):
TAAA
Found at i:56976511 original size:20 final size:20
Alignment explanation
Indices: 56976486--56976525 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
56976476 AAATTTAAAT
56976486 GAAATACTAGGGTAAATCAG
1 GAAATACTAGGGTAAATCAG
*
56976506 GAAATACTAGTGTAAATCAG
1 GAAATACTAGGGTAAATCAG
56976526 AACAAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.23
Consensus pattern (20 bp):
GAAATACTAGGGTAAATCAG
Found at i:56978010 original size:44 final size:44
Alignment explanation
Indices: 56977965--56979399 Score: 886
Period size: 44 Copynumber: 32.5 Consensus size: 44
56977955 TACTCAACTA
* * * *
56977965 CAACTTCAGGGAAATGAGATTAGTAGCTTCAATCTGCTCCACTA
1 CAACTTCAGGGAGATAAGATTAGTAACTTCAATCTGCTCCACTG
* * * * *
56978009 CAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTA
1 CAACTTCAGGGAGATAAGATTAGTAACTTCAATCTGCTCCACTG
* * * ** *
56978053 CAACTTCAGAGAGATAAGATTTGCAACTTTGATCTACTCCACTG
1 CAACTTCAGGGAGATAAGATTAGTAACTTCAATCTGCTCCACTG
*
56978097 CAACTTCAGGGAGATAAGATCT-GTAAGTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGAT-TAGTAACTTCAATCTGCTCCACTG
* * * * * *
56978141 TAACTTCAGGGAGATAACATTTTTAATTTGTAGCTTTAATCTGTTCCCTCTG
1 CAACTTCAGGGAGATAAGA---TT-A---GTAACTTCAATCTGCT-CCACTG
* * * * *
56978193 CAACTTCAGGGAAATAAGATTCGCTATCTTCAGTTTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTAG-TAACTTCAATCTGCTCCACTG
* * * *
56978238 CAATTTTAGGGAGATAAAGACTT-GTAACTTCAACCTGCTCTACTG
1 CAACTTCAGGGAGAT-AAGA-TTAGTAACTTCAATCTGCTCCACTG
* * * * * *
56978283 CAACTTTAAGGAGATAAGATTTA-TAGCTTTAATCTGATCTACTG
1 CAACTTCAGGGAGATAAGA-TTAGTAACTTCAATCTGCTCCACTG
* * * * * * *
56978327 CAACTTTAGAGAGATAAGATTTGCTATCTTCGATCTACTCCACTA
1 CAACTTCAGGGAGATAAGATTAG-TAACTTCAATCTGCTCCACTG
* * * * *
56978372 CAACTTTAAGGAGATAAGACTTA-TAACTTTAACCTACTCCACTG
1 CAACTTCAGGGAGATAAGA-TTAGTAACTTCAATCTGCTCCACTG
* * * *
56978416 CAACTTCAGGGAGATAATGTTTA-TAGCTTTAATCTGCTCTACTG
1 CAACTTCAGGGAGATAA-GATTAGTAACTTCAATCTGCTCCACTG
* * * **
56978460 CAACTTCAGAGATATAAGATTTGCTATTTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTAG-TAACTTCAATCTGCTCCACTG
* *
56978505 CAACTTCAGGGAGATAAGACTT-GTAACTTCAACCTGCTCTACTG
1 CAACTTCAGGGAGATAAGA-TTAGTAACTTCAATCTGCTCCACTG
** *
56978549 CAACTTCAGGGAGACCAGATCT-GTAACTTCAACCTGCTCCACTG
1 CAACTTCAGGGAGATAAGAT-TAGTAACTTCAATCTGCTCCACTG
* * * *
56978593 CAACTTCAGAGAGATCAGATCTA-TAACTTCAATTTGCTCTA-TG
1 CAACTTCAGGGAGATAAGAT-TAGTAACTTCAATCTGCTCCACTG
** * * *
56978636 CAACTTCAAAGAGATAAGACTT-GTAACTTTAACCTGCTCCGCTG
1 CAACTTCAGGGAGATAAGA-TTAGTAACTTCAATCTGCTCCACTG
* * * * *
56978680 CAACTTCAGGGAGATAAGGTTTA-TAGCTTTAATCTGCTCTATTG
1 CAACTTCAGGGAGATAA-GATTAGTAACTTCAATCTGCTCCACTG
* * * *
56978724 CAACTTCAGAGAGATAAGATTTGCTATCTTTC-ATCTACTCCACTG
1 CAACTTCAGGGAGATAAGATTAG-TAAC-TTCAATCTGCTCCACTG
* * * * * *
56978769 CAACTTCTGAGAGATAAGGTTTA-TAGCTAT-AATCTGCTCTACTA
1 CAACTTCAGGGAGATAA-GATTAGTAACT-TCAATCTGCTCCACTG
* * ** **
56978813 CAACTTCAGAGATATAAGATTTTCTATTTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGA-TTAGTAACTTCAATCTGCTCCACTG
* * *
56978858 CAACTTCAGGGAGATCAGATCT-GTAACTTCAA-CTTGCCCCATTG
1 CAACTTCAGGGAGATAAGAT-TAGTAACTTCAATC-TGCTCCACTG
*
56978902 CAACTTCA-GG-G---AGATCA--AA--TCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTAGTAACTTCAATCTGCTCCACTG
* * * * * *
56978937 CAACTTCAAGGAGATAAAACTT-GTAACTTTAACCTGCTCCGCTC
1 CAACTTCAGGGAGATAAGA-TTAGTAACTTCAATCTGCTCCACTG
* * * * * *
56978981 CAACTTCAGGAAGATAAGGTTTA-TAGCTTTAATCTGCTCTACCG
1 CAACTTCAGGGAGATAA-GATTAGTAACTTCAATCTGCTCCACTG
* * * * * * *
56979025 CAACTTCAGAGAGATAAGGTTTGCTATCTTCCATCTACTCCACCG
1 CAACTTCAGGGAGATAAGATTAG-TAACTTCAATCTGCTCCACTG
* * * * * *
56979070 CAACTTTAGGGAGATAAAGTTTA-TAGCTTTAATCAGCTCTACTG
1 CAACTTCAGGGAGAT-AAGATTAGTAACTTCAATCTGCTCCACTG
** * * * * * *
56979114 CAACTTCAGATAGATAAGATTCACTATCTTCAGTCTTCTCTACTT
1 CAACTTCAGGGAGATAAGATT-AGTAACTTCAATCTGCTCCACTG
* * *
56979159 CAACTTTAGGGAGATAAGACTT-GTAACTTCAACCTGCTCCATTG
1 CAACTTCAGGGAGATAAGA-TTAGTAACTTCAATCTGCTCCACTG
* * * * * *
56979203 CAACTTCAAGGAGATAAGGCTT-GTAACTTTAACCTACTCCATTG
1 CAACTTCAGGGAGATAA-GATTAGTAACTTCAATCTGCTCCACTG
*
56979247 CAACTTCAGGGAGATCAA-ATCT-GTAACTTCAACCTGCTCCACTG
1 CAACTTCAGGGAGAT-AAGAT-TAGTAACTTCAATCTGCTCCACTG
** *
56979291 CAACTTCAAAGAGATCAA-ATCTA-TAACTTCAATCTGATCCACTG
1 CAACTTCAGGGAGAT-AAGAT-TAGTAACTTCAATCTGCTCCACTG
* * * * * * * * *
56979335 TAACTTCAGGAAGATCAGACTCGTATCTTTAATCTTCTTCACTG
1 CAACTTCAGGGAGATAAGATTAGTAACTTCAATCTGCTCCACTG
* *
56979379 TAACTTCAGGAAGATAAGATT
1 CAACTTCAGGGAGATAAGATT
56979400 TGTGGTTTGT
Statistics
Matches: 1095, Mismatches: 231, Indels: 130
0.75 0.16 0.09
Matches are distributed among these distances:
35 20 0.02
36 3 0.00
37 3 0.00
39 4 0.00
40 2 0.00
41 1 0.00
42 3 0.00
43 58 0.05
44 691 0.63
45 240 0.22
46 32 0.03
47 3 0.00
49 2 0.00
51 12 0.01
52 21 0.02
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGATTAGTAACTTCAATCTGCTCCACTG
Found at i:56978341 original size:89 final size:88
Alignment explanation
Indices: 56978228--56979402 Score: 719
Period size: 89 Copynumber: 13.4 Consensus size: 88
56978218 ATCTTCAGTT
* * * * *
56978228 TGCTCCACTGCAATTTTAGGGAGATAAAGACTTGTAACTTCAACCTGCTCTACTGCAACTTTAAG
1 TGCTCCACTGCAACTTCAGAGAGAT-AAGATTTGTAACTTCAATCTGCTCTACTGCAACTTTAAG
*
56978293 GAGATAAGATTTATAGCTTTAATC
65 GAGATAAGATTTATAACTTTAATC
* * * * * * * *
56978317 TGATCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCGATCTACTCCACTACAACTTTAAG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TAACTTCAATCTGCTCTACTGCAACTTTAAG
* *
56978382 GAGATAAGACTTATAACTTTAACC
65 GAGATAAGATTTATAACTTTAATC
* * * * * *
56978406 TACTCCACTGCAACTTCAGGGAGATAATG-TTTATAGCTTTAATCTGCTCTACTGCAAC-TTCAG
1 TGCTCCACTGCAACTTCAGAGAGATAA-GATTTGTAACTTCAATCTGCTCTACTGCAACTTTAAG
* * *
56978469 AGATATAAGATTTGCT-ATTTTCAATC
65 -GAGATAAGATTT-ATAACTTT-AATC
* * * * *
56978495 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTGCAACTTCAGGG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTTAAGG
** * * * *
56978560 AGACCAGATCTGTAACTTCAACC
66 AGATAAGATTTATAACTTTAATC
* * * * * *
56978583 TGCTCCACTGCAACTTCAGAGAGATCAGATCTATAACTTCAATTTGCTCTA-TGCAACTTCAAAG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTTAAGG
* * *
56978647 AGATAAGACTTGTAACTTTAACC
66 AGATAAGATTTATAACTTTAATC
* * * * * * * *
56978670 TGCTCCGCTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAATCTGCTCTATTGCAAC-TTCAGA
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTTAAG-
* * *
56978734 GAGATAAGATTTGCTATCTTTCATC
65 GAGATAAGATTT-ATAACTTTAATC
* * * * * * *
56978759 TACTCCACTGCAACTTCTGAGAGATAAGGTTTATAGCTAT-AATCTGCTCTACTACAAC-TTCAG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACT-TCAATCTGCTCTACTGCAACTTTAAG
* * *
56978822 AGATATAAGATTT-TCTATTTTCAATC
65 -GAGATAAGATTTAT-AACTTT-AATC
* * * * * * *
56978848 TGCTCCACTGCAACTTCAGGGAGATCAGATCTGTAACTTCAA-CTTGCCCCATTGCAAC-TTCAG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATC-TGCTCTACTGCAACTTTAAG
* *
56978911 G-G---AGA-TCA-AA--TCAATC
65 GAGATAAGATTTATAACTTTAATC
* * * * ** * *
56978927 TGCTCCACTGCAACTTCA-AGGAGATAAAACTTGTAACTTTAACCTGCTCCGCTCCAAC-TTCAG
1 TGCTCCACTGCAACTTCAGA-GAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTTAAG
* *
56978990 GAAGATAAGGTTTATAGCTTTAATC
65 G-AGATAAGATTTATAACTTTAATC
* * * * * * * * *
56979015 TGCTCTACCGCAACTTCAGAGAGATAAGGTTTGCTATCTTCCATCTACTCCACCGCAACTTTAGG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TAACTTCAATCTGCTCTACTGCAACTTTAAG
*
56979080 GAGATAA-AGTTTATAGCTTTAATC
65 GAGATAAGA-TTTATAACTTTAATC
* * * ** * * * * *
56979104 AGCTCTACTGCAACTTCAGATAGATAAGATTCACTATCTTCAGTCTTCTCTACTTCAACTTTAGG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATT-TGTAACTTCAATCTGCTCTACTGCAACTTTAAG
* * * *
56979169 GAGATAAGACTTGTAACTTCAACC
65 GAGATAAGATTTATAACTTTAATC
* ** * * * * * * *
56979193 TGCTCCATTGCAACTTCA-AGGAGATAAGGCTTGTAACTTTAACCTACTCCATTGCAACTTCAGG
1 TGCTCCACTGCAACTTCAGA-GAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTTAAG
* * * *
56979257 GAGATCAA-ATCTGTAACTTCAACC
65 GAGAT-AAGATTTATAACTTTAATC
* * * * * * *
56979281 TGCTCCACTGCAACTTCAAAGAGATCAA-ATCTATAACTTCAATCTGATCCACTGTAAC-TTCAG
1 TGCTCCACTGCAACTTCAGAGAGAT-AAGATTTGTAACTTCAATCTGCTCTACTGCAACTTTAAG
* * ** *
56979344 GAAGATCAGACTCGTATCTTTAATC
65 G-AGATAAGATTTATAACTTTAATC
* * *
56979369 TTCTTCACTGTAACTTCAG-GAAGATAAGATTTGT
1 TGCTCCACTGCAACTTCAGAG-AGATAAGATTTGT
56979403 GGTTTGTAGC
Statistics
Matches: 845, Mismatches: 199, Indels: 85
0.75 0.18 0.08
Matches are distributed among these distances:
79 55 0.07
80 2 0.00
81 1 0.00
82 1 0.00
83 1 0.00
84 5 0.01
85 2 0.00
86 1 0.00
87 86 0.10
88 264 0.31
89 418 0.49
90 9 0.01
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31
Consensus pattern (88 bp):
TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTTAAGG
AGATAAGATTTATAACTTTAATC
Found at i:56978439 original size:133 final size:132
Alignment explanation
Indices: 56977948--56979349 Score: 1035
Period size: 133 Copynumber: 10.6 Consensus size: 132
56977938 GAATTGTCGA
* * * * * * *
56977948 TTCAGTCTACTCAACTACAACTTCAGGGAAATGAGA-TTAGTAGCTTCAATCTGCTCCACTACAA
1 TTCA-TCTACTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTCAACCTGCTCCACTGCAA
* *
56978012 CTTCAGGGAGATAA-GATTTGTAGCTTTAATCTGCTCTACTACAACTTCAGAGAGATAAGATTTG
64 CTTCAGGGAGATAATG-TTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTG
*
56978076 C-AAC
128 CTATC
* * * *
56978080 TTTGATCTACTCCACTGCAACTTCAGGGAGATAAGA-TCTGTAAGTTCAATCTGCTCCACTGTAA
1 -TTCATCTACTCCACTGCAACTTCAGGGAGATAAGACT-TGTAACTTCAACCTGCTCCACTGCAA
* * * *
56978144 CTTCAGGGAGATAACATTTTTAATTTGTAGCTTTAATCTGTTCCCT-CTGCAACTTCAGGGAAAT
64 CTTCAGGGAGAT-A-ATGTTT-A----TAGCTTTAATCTG--CTCTACTGCAACTTCAGAGAGAT
*
56978208 AAGATTCGCTATC
120 AAGATTTGCTATC
* * * * *
56978221 TTCAGTTTGCTCCACTGCAATTTTAGGGAGATAAAGACTTGTAACTTCAACCTGCTCTACTGCAA
1 TTCA-TCTACTCCACTGCAACTTCAGGGAGAT-AAGACTTGTAACTTCAACCTGCTCCACTGCAA
* * * *
56978286 CTTTAAGGAGATAA-GATTTATAGCTTTAATCTGATCTACTGCAACTTTAGAGAGATAAGATTTG
64 CTTCAGGGAGATAATG-TTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTG
56978350 CTATC
128 CTATC
* * * * * *
56978355 TTCGATCTACTCCACTACAACTTTAAGGAGATAAGACTTATAACTTTAACCTACTCCACTGCAAC
1 TTC-ATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAAC
*
56978420 TTCAGGGAGATAATGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGATATAAGATTTGCT
65 TTCAGGGAGATAATGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCT
*
56978485 ATT
130 ATC
* *
56978488 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTGCAAC
1 TTC-ATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAAC
* * * * * * * *
56978553 TTCAGGGAGACCAGATCTGTA-A-CTTCAACCTGCTCCACTGCAACTTCAGAGAGATCAGATCT-
65 TTCAGGGAGA-TA-ATGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTG
* *
56978615 ATAAC
128 CTATC
* * * ** * *
56978620 TTCAATTTGCTCTA-TGCAACTTCAAAGAGATAAGACTTGTAACTTTAACCTGCTCCGCTGCAAC
1 TTC-ATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAAC
* *
56978684 TTCAGGGAGATAAGGTTTATAGCTTTAATCTGCTCTATTGCAACTTCAGAGAGATAAGATTTGCT
65 TTCAGGGAGATAATGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCT
56978749 ATC
130 ATC
* * ** * * * * *
56978752 TTTCATCTACTCCACTGCAACTTCTGAGAGATAAGGTTTATAGCTAT-AATCTGCTCTACTACAA
1 -TTCATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACT-TCAACCTGCTCCACTGCAA
* * * * * * * *
56978816 CTTCAGAGATATAA-GATTTTCTA-TTTTCAATCTGCTCCACTGCAACTTCAGGGAGATCAGATC
64 CTTCAGGGAGATAATG--TTTATAGCTTT-AATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
*
56978879 TG-TAAC
126 TGCTATC
* * * * * *
56978885 TTCAACTTGCCCCATTGCAACTTCAGGGAGAT----C----AA-ATCAATCTGCTCCACTGCAAC
1 TTCATC-TACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAAC
* *** * * * ** * * *
56978941 TTCAAGGAGATAAAACTTGTAACTTTAACCTGCTCCGCTCCAACTTCAG-GAAGATAAGGTTT-A
65 TTCAGGGAGATAATGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAG-AGATAAGATTTGC
*
56979004 TAGC
129 TATC
* * * * * ** * * * * *
56979008 TTTAATCTGCTCTACCGCAACTTCAGAGAGATAAGGTTTGCTATCTTCCATCTACTCCACCGCAA
1 -TTCATCTACTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTCAACCTGCTCCACTGCAA
* * * * **
56979073 CTTTAGGGAGATAAAGTTTATAGCTTTAATCAGCTCTACTGCAACTTCAGATAGATAAGATTCAC
64 CTTCAGGGAGATAATGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGC
56979138 TATC
129 TATC
* * * * *
56979142 TTCAGTCTTCTCTACTTCAACTTTAGGGAGATAAGACTTGTAACTTCAACCTGCTCCATTGCAAC
1 TTCA-TCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAAC
* * * * * * * * * * *
56979207 TTCAAGGAGATAAGGCTTGTAACTTTAACCTACTCCATTGCAACTTCAGGGAGATCAA-ATCTG-
65 TTCAGGGAGATAATGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGAT-AAGATTTGC
*
56979270 TAAC
129 TATC
* * ** * * * *
56979274 TTCAACCTGCTCCACTGCAACTTCAAAGAGATCAA-A-TCTATAACTTCAATCTGATCCACTGTA
1 TTC-ATCTACTCCACTGCAACTTCAGGGAGAT-AAGACT-TGTAACTTCAACCTGCTCCACTGCA
*
56979337 ACTTCAGGAAGAT
63 ACTTCAGGGAGAT
56979350 CAGACTCGTA
Statistics
Matches: 1003, Mismatches: 212, Indels: 109
0.76 0.16 0.08
Matches are distributed among these distances:
122 1 0.00
123 56 0.06
124 33 0.03
125 1 0.00
129 4 0.00
130 2 0.00
131 90 0.09
132 150 0.15
133 407 0.41
134 130 0.13
135 19 0.02
139 14 0.01
140 30 0.03
141 29 0.03
142 36 0.04
143 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (132 bp):
TTCATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACT
TCAGGGAGATAATGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTA
TC
Found at i:56978985 original size:79 final size:79
Alignment explanation
Indices: 56978842--56978995 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 79
56978832 TTTTCTATTT
* * * * * *
56978842 TCAATCTGCTCCACTGCAACTTCAGGGAGATCAGATCTGTAACTTCAACTTGCCCCATTGCAACT
1 TCAATCTGCTCCACTGCAACTTCAAGGAGATAAAATCTGTAACTTCAACCTGCCCCACTCCAACT
*
56978907 TCAGGGAGATCAAA
66 TCAGGAAGATCAAA
* * *
56978921 TCAATCTGCTCCACTGCAACTTCAAGGAGATAAAA-CTTGTAACTTTAACCTGCTCCGCTCCAAC
1 TCAATCTGCTCCACTGCAACTTCAAGGAGATAAAATC-TGTAACTTCAACCTGCCCCACTCCAAC
56978985 TTCAGGAAGAT
65 TTCAGGAAGAT
56978996 AAGGTTTATA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 1 0.02
79 63 0.98
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (79 bp):
TCAATCTGCTCCACTGCAACTTCAAGGAGATAAAATCTGTAACTTCAACCTGCCCCACTCCAACT
TCAGGAAGATCAAA
Found at i:56979003 original size:301 final size:303
Alignment explanation
Indices: 56978491--56979217 Score: 989
Period size: 301 Copynumber: 2.4 Consensus size: 303
56978481 TGCTATTTTC
* * * * * *
56978491 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGTAACTTCAACCTGCTCTACTGCAACTT
1 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGCTCTACTGCAACTT
* *
56978555 CAGGGAGACCAGATCTGTAACTTCAACCTGCTCCACTGCAACTTCAGAGAGATCAGATCTATAAC
66 CAGGGAGATCAGATCTGTAACTTCAACCTGCTCCATTGCAACTTCAG-G-G---AGATCTATAAC
* * * *
56978620 TTCAATTTGCTCTATGCAACTTCAAAGAGATAAGACTTGTAACTTTAACCTGCTCCGCTGCAACT
126 -TCAATCTGCTCCATGCAACTTCAAAGAGATAAAACTTGTAACTTTAACCTGCTCCGCTCCAACT
* **
56978685 TCAGGGAGATAAGGTTTATAGCTTTAATCTGCTCTATTGCAACTTCAGAGAGATAAGATTTGCTA
190 TCAGGAAGATAAGGTTTATAGCTTTAATCTGCTCTACCGCAACTTCAGAGAGATAAGATTTGCTA
* * *
56978750 TCTTTCATCTACTCCACTGCAACTTCT-GAGAGATAAGGTTTATAGCTAT
255 TCTTCCATCTACTCCACCGCAACTT-TAGAGAGATAAAGTTTATAGCTAT
* * * *
56978799 AATCTGCTCTACTACAACTTCAGAGATATAAGATTTTCTATTTTCAATCTGCTCCACTGCAACTT
1 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGCTCTACTGCAACTT
* *
56978864 CAGGGAGATCAGATCTGTAACTTCAACTTGCCCCATTGCAACTTCAGGGAGATC-A-AA-TCAAT
66 CAGGGAGATCAGATCTGTAACTTCAACCTGCTCCATTGCAACTTCAGGGAGATCTATAACTCAAT
*
56978926 CTGCTCCACTGCAACTTCAAGGAGATAAAACTTGTAACTTTAACCTGCTCCGCTCCAACTTCAGG
131 CTGCTCCA-TGCAACTTCAAAGAGATAAAACTTGTAACTTTAACCTGCTCCGCTCCAACTTCAGG
*
56978991 AAGATAAGGTTTATAGCTTTAATCTGCTCTACCGCAACTTCAGAGAGATAAGGTTTGCTATCTTC
195 AAGATAAGGTTTATAGCTTTAATCTGCTCTACCGCAACTTCAGAGAGATAAGATTTGCTATCTTC
* *
56979056 CATCTACTCCACCGCAACTTTAGGGAGATAAAGTTTATAGCTTT
260 CATCTACTCCACCGCAACTTTAGAGAGATAAAGTTTATAGCTAT
* * ** * * *
56979100 AATCAGCTCTACTGCAACTTCAGATAGATAAGATTCACTATCTTCAGTCTTCTCTACTTCAACTT
1 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGCTCTACTGCAACTT
* * *
56979165 TAGGGAGATAAGA-CTTGTAACTTCAACCTGCTCCATTGCAACTTCAAGGAGAT
66 CAGGGAGATCAGATC-TGTAACTTCAACCTGCTCCATTGCAACTTCAGGGAGAT
56979218 AAGGCTTGTA
Statistics
Matches: 371, Mismatches: 44, Indels: 15
0.86 0.10 0.03
Matches are distributed among these distances:
300 13 0.04
301 251 0.68
302 2 0.01
303 1 0.00
304 5 0.01
307 1 0.00
308 30 0.08
309 68 0.18
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (303 bp):
AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGCTCTACTGCAACTT
CAGGGAGATCAGATCTGTAACTTCAACCTGCTCCATTGCAACTTCAGGGAGATCTATAACTCAAT
CTGCTCCATGCAACTTCAAAGAGATAAAACTTGTAACTTTAACCTGCTCCGCTCCAACTTCAGGA
AGATAAGGTTTATAGCTTTAATCTGCTCTACCGCAACTTCAGAGAGATAAGATTTGCTATCTTCC
ATCTACTCCACCGCAACTTTAGAGAGATAAAGTTTATAGCTAT
Found at i:56979340 original size:21 final size:21
Alignment explanation
Indices: 56979267--56979342 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 21
56979257 GAGATCAAAT
* *
56979267 CTGTAACTTCAACCTGCTCCA
1 CTGTAACTTCAAACTGATCCA
* ** *
56979288 CTGCAACTTCAAAGAGATCAAA
1 CTGTAACTTCAAACTGATC-CA
* *
56979310 TCTATAACTTCAATCTGATCCA
1 -CTGTAACTTCAAACTGATCCA
56979332 CTGTAACTTCA
1 CTGTAACTTCA
56979343 GGAAGATCAG
Statistics
Matches: 40, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
21 24 0.60
22 2 0.05
23 14 0.35
ACGTcount: A:0.33, C:0.29, G:0.09, T:0.29
Consensus pattern (21 bp):
CTGTAACTTCAAACTGATCCA
Found at i:56979696 original size:94 final size:94
Alignment explanation
Indices: 56979461--56979741 Score: 321
Period size: 94 Copynumber: 3.0 Consensus size: 94
56979451 TGCTATCTTC
* * * * * * * *
56979461 AATCTACTCCATTGCAACTTCAGGAAGATAATATTTGCTATGATAGA-TTTAACCCGACTCACTA
1 AATCTACTCCATTGCAACTTCAGGGAGATAAGATTCGCCATGAT-GACTTTAATCTGTCCCACTA
* * *
56979525 CAACTTTAAAGGTATAGGACTTGTGGCTTT
65 CAACTTTAAGGGTATAGGATTTGTGGTTTT
* *
56979555 AATCTACTTCATTGCAACTTCAGGGAGATAAGATTCGCCATGTTGACTTTAATCTGTCCCACTAC
1 AATCTACTCCATTGCAACTTCAGGGAGATAAGATTCGCCATGATGACTTTAATCTGTCCCACTAC
* *
56979620 AATTTTAAGGGTATAAGATTTGTGGTTTT
66 AACTTTAAGGGTATAGGATTTGTGGTTTT
* * * * * * * *
56979649 ATTCTGCTCCATTGTAACTTCAGGGAGATAAGATTCGCCATAATGACTTCAATCTATCCCATTGC
1 AATCTACTCCATTGCAACTTCAGGGAGATAAGATTCGCCATGATGACTTTAATCTGTCCCACTAC
* *
56979714 AACTTCAAGGGTATAGGATTTATGGTTT
66 AACTTTAAGGGTATAGGATTTGTGGTTT
56979742 CTCTGATCTG
Statistics
Matches: 157, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
93 2 0.01
94 155 0.99
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (94 bp):
AATCTACTCCATTGCAACTTCAGGGAGATAAGATTCGCCATGATGACTTTAATCTGTCCCACTAC
AACTTTAAGGGTATAGGATTTGTGGTTTT
Found at i:56987199 original size:4 final size:4
Alignment explanation
Indices: 56987172--56987231 Score: 50
Period size: 4 Copynumber: 15.2 Consensus size: 4
56987162 TTAAAAAAAG
* * * * * *
56987172 TAAA TGAA TAAA GAAA T-GA TAAA TAAA TAGA TAAA TAAA CAAA CAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
*
56987219 TAAA TAAA AAAA T
1 TAAA TAAA TAAA T
56987232 TTGGTTAAAA
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
3 2 0.05
4 41 0.95
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (4 bp):
TAAA
Found at i:56988713 original size:21 final size:20
Alignment explanation
Indices: 56988671--56988713 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
56988661 GAGATCTATG
* * *
56988671 AAATATTTTAACCATTTTAA
1 AAATATATTAACCAATTCAA
56988691 AAATATATTATACCAATTCAA
1 AAATATATTA-ACCAATTCAA
56988712 AA
1 AA
56988714 CTAGATCTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (20 bp):
AAATATATTAACCAATTCAA
Found at i:56990922 original size:14 final size:14
Alignment explanation
Indices: 56990903--56990933 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
56990893 ATGCATCGGC
56990903 TGGCAACTTGTAAA
1 TGGCAACTTGTAAA
56990917 TGGCAACTTGTAAA
1 TGGCAACTTGTAAA
56990931 TGG
1 TGG
56990934 TATACGCTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (14 bp):
TGGCAACTTGTAAA
Found at i:56992036 original size:169 final size:169
Alignment explanation
Indices: 56991752--56992076 Score: 555
Period size: 169 Copynumber: 1.9 Consensus size: 169
56991742 AAACTTTACT
* * *
56991752 ATCATATCCAAAAAGGTATTTCAAACAATCTCGTCCATTAATTATGTTAATATAGAACCAAGAAG
1 ATCAAATCCAAAAAGGTATTCCAAACAATCTCGTCCATTAATTATGTTAATATAAAACCAAGAAG
**
56991817 ACTTTCGTTACATATATATTGTAACTAAATTCATCCCTGATCACGTATATTAACATAACCAAATG
66 ACTTTCGTTACATATATATCATAACTAAATTCATCCCTGATCACGTATATTAACATAACCAAATG
56991882 ACATAAATCAAGTATGGATGTGTAGACATAACCAAATCC
131 ACATAAATCAAGTATGGATGTGTAGACATAACCAAATCC
*
56991921 ATCAAATCCAAAAATGTATTCCAAACAATCTCGTCCATTAATTATGTTAATATAAAACCAAGACA
1 ATCAAATCCAAAAAGGTATTCCAAACAATCTCGTCCATTAATTATGTTAATATAAAACCAAGA-A
*
56991986 -ACTTTCGTTATATATATATCATAACTAAA-TCTATCCCTGATCACGTATATTAACATAACCAAA
65 GACTTTCGTTACATATATATCATAACTAAATTC-ATCCCTGATCACGTATATTAACATAACCAAA
56992049 TGACATAAATCAAGTATGGATGTGTAGA
129 TGACATAAATCAAGTATGGATGTGTAGA
56992077 ATGAAAACTA
Statistics
Matches: 147, Mismatches: 7, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
168 2 0.01
169 144 0.98
170 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (169 bp):
ATCAAATCCAAAAAGGTATTCCAAACAATCTCGTCCATTAATTATGTTAATATAAAACCAAGAAG
ACTTTCGTTACATATATATCATAACTAAATTCATCCCTGATCACGTATATTAACATAACCAAATG
ACATAAATCAAGTATGGATGTGTAGACATAACCAAATCC
Found at i:56993228 original size:61 final size:61
Alignment explanation
Indices: 56993109--56993244 Score: 175
Period size: 61 Copynumber: 2.2 Consensus size: 61
56993099 CTTAAAAAAA
* * * *
56993109 GGGACACATGCCCGTGTGGCCAGGCCGTGTGGAATGCCCCAGGCCTTATGACTCTCGAAGTT
1 GGGACACACGACCGTGT-CCCAGCCCGTGTGGAATGCCCCAGGCCTTATGACTCTCGAAGTT
* * *
56993171 GGGATACACGACCGTGTCCCAGCCCGTGTGGAATGCCCTAGG-CTGTGTGACTCTCGAAGTT
1 GGGACACACGACCGTGTCCCAGCCCGTGTGGAATGCCCCAGGCCT-TATGACTCTCGAAGTT
*
56993232 GGGACACATGACC
1 GGGACACACGACC
56993245 TTCACTGACT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
60 2 0.03
61 48 0.75
62 14 0.22
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.21
Consensus pattern (61 bp):
GGGACACACGACCGTGTCCCAGCCCGTGTGGAATGCCCCAGGCCTTATGACTCTCGAAGTT
Found at i:56994835 original size:71 final size:71
Alignment explanation
Indices: 56994747--56994910 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
56994737 CGAGATGTAT
56994747 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
56994812 AGGACA
66 AGGACA
*
56994818 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
56994883 CGGACA
66 AGGACA
56994889 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
56994911 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:57002433 original size:70 final size:71
Alignment explanation
Indices: 57002283--57002445 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
57002273 GAGATGTATC
57002283 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
57002348 AGGACA
66 AGGACA
57002354 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
57002418 AGGACA
66 AGGACA
57002424 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
57002446 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:57005213 original size:19 final size:18
Alignment explanation
Indices: 57005173--57005213 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
57005163 AATATTACAC
*
57005173 ATTTCAATTTCACATTAA
1 ATTTCAATTTCACACTAA
*
57005191 ATTTCAATTTTCACACTAT
1 ATTTCAA-TTTCACACTAA
57005210 ATTT
1 ATTT
57005214 TGCTTATTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTCAATTTCACACTAA
Found at i:57005715 original size:3 final size:3
Alignment explanation
Indices: 57005707--57005758 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
57005697 TCATTATAAC
57005707 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
57005755 TAT T
1 TAT T
57005759 TAATATAACA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:57022376 original size:20 final size:20
Alignment explanation
Indices: 57022348--57022385 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
57022338 CTATATAATG
57022348 TTTTAAATTTTTTTTAAAGT
1 TTTTAAATTTTTTTTAAAGT
*
57022368 TTTTTAATTTTTTTTAAA
1 TTTTAAATTTTTTTTAAA
57022386 TATTTCTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTTAAATTTTTTTTAAAGT
Found at i:57022379 original size:9 final size:10
Alignment explanation
Indices: 57022348--57022386 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
57022338 CTATATAATG
57022348 TTTTAAATTTT
1 TTTTAAA-TTT
*
57022359 TTTTAAAGTT
1 TTTTAAATTT
*
57022369 TTTTAATTTT
1 TTTTAAATTT
57022379 TTTTAAAT
1 TTTTAAAT
57022387 ATTTCTAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
10 17 0.71
11 7 0.29
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (10 bp):
TTTTAAATTT
Found at i:57024469 original size:15 final size:15
Alignment explanation
Indices: 57024449--57024478 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
57024439 TAAATGTCTC
57024449 TTCTTCTTTTTCTTT
1 TTCTTCTTTTTCTTT
57024464 TTCTTCTTTTTCTTT
1 TTCTTCTTTTTCTTT
57024479 CTGATAACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
TTCTTCTTTTTCTTT
Found at i:57025152 original size:63 final size:63
Alignment explanation
Indices: 57024994--57025161 Score: 237
Period size: 63 Copynumber: 2.7 Consensus size: 63
57024984 ATGTATCAGA
* * * ** *
57024994 CCGTGTAACTCACTATTTTGGAATTAGAATCACACAAGCTAGAGACACGGGCATGTGTCTAAG
1 CCGTATAACTCACTATTTTGGAATTAGAGTCATACGGGCTAGAGACACGGGCATGTGTCCAAG
* * *
57025057 CCGTGTAACTCACTATTTTGGAATTAAAGTCATACGGGCTAGAGACATGGGCATGTGTCCAAG
1 CCGTATAACTCACTATTTTGGAATTAGAGTCATACGGGCTAGAGACACGGGCATGTGTCCAAG
* *
57025120 CCGTATGACTCACTATTTTGGAATTAGAGTCATATGGGCTAG
1 CCGTATAACTCACTATTTTGGAATTAGAGTCATACGGGCTAG
57025162 CCACCCGGGC
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 94 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (63 bp):
CCGTATAACTCACTATTTTGGAATTAGAGTCATACGGGCTAGAGACACGGGCATGTGTCCAAG
Found at i:57027934 original size:46 final size:46
Alignment explanation
Indices: 57027884--57028058 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
57027874 TGGTTGAGCA
57027884 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57027930 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57027975 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57028023 CCCGAGCTCGTTGAGTTGAGTCCGAGTT-GCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57028059 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 10 0.09
46 55 0.50
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57028040 original size:93 final size:93
Alignment explanation
Indices: 57027881--57028050 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
57027871 GGATGGTTGA
* *
57027881 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57027946 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
57027974 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57028039 TGAGTCCGAGTT
66 TGAGTCCGAGTT
57028051 GCTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57031027 original size:15 final size:15
Alignment explanation
Indices: 57031007--57031075 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
57030997 GTATCTTGGG
57031007 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
57031022 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
57031037 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
57031052 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
57031067 TTTCTTTAT
1 TTTCTTTAT
57031076 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:57031076 original size:30 final size:30
Alignment explanation
Indices: 57030998--57031085 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
57030988 CATAGTATCG
* * * *
57030998 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
57031028 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
57031058 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
57031086 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:57033506 original size:46 final size:46
Alignment explanation
Indices: 57033456--57033631 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
57033446 TGGTTGAGCA
57033456 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57033502 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57033547 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
57033595 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57033632 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57033612 original size:93 final size:93
Alignment explanation
Indices: 57033453--57033623 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
57033443 GGATGGTTGA
* *
57033453 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57033518 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
57033546 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57033611 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
57033624 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57036598 original size:15 final size:15
Alignment explanation
Indices: 57036578--57036646 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
57036568 GTATCTTGGG
57036578 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
57036593 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
57036608 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
57036623 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
57036638 TTTCTTTAT
1 TTTCTTTAT
57036647 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:57036647 original size:30 final size:30
Alignment explanation
Indices: 57036569--57036656 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
57036559 CATAGTATCG
* * * *
57036569 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
57036599 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
57036629 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
57036657 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:57040289 original size:40 final size:39
Alignment explanation
Indices: 57040124--57040307 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
57040114 AAATTGAATG
* * *
57040124 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
57040164 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
57040204 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
57040244 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
57040283 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
57040308 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:57040332 original size:80 final size:81
Alignment explanation
Indices: 57040164--57040352 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
57040154 GCTGGAAATT
* * * *
57040164 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
57040229 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
57040245 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
57040308 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
57040324 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
57040353 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:57048366 original size:40 final size:39
Alignment explanation
Indices: 57048201--57048384 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
57048191 AAATTGAATG
* * *
57048201 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
57048241 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
57048281 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
57048321 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
57048360 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
57048385 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:57048409 original size:80 final size:81
Alignment explanation
Indices: 57048241--57048429 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
57048231 GCTGGAAATT
* * * *
57048241 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
57048306 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
57048322 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
57048385 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
57048401 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
57048430 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:57056942 original size:45 final size:45
Alignment explanation
Indices: 57056869--57056984 Score: 189
Period size: 45 Copynumber: 2.6 Consensus size: 45
57056859 CGGTACTAAA
* *
57056869 CAGT-ATTTACAGCAGAGCTGCCAATATAATAGGCTTAGAGCCAT
1 CAGTGATTTGCAGCAGAGCTGCCAGTATAATAGGCTTAGAGCCAT
* *
57056913 CAGTGATTTGCAGCAAAGCTGCTAGTATAATAGGCTTAGAGCCAT
1 CAGTGATTTGCAGCAGAGCTGCCAGTATAATAGGCTTAGAGCCAT
57056958 CAGTGATTTGCAGCAGAGCTGCCAGTA
1 CAGTGATTTGCAGCAGAGCTGCCAGTA
57056985 CAGTACACTT
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
44 4 0.06
45 61 0.94
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (45 bp):
CAGTGATTTGCAGCAGAGCTGCCAGTATAATAGGCTTAGAGCCAT
Found at i:57057153 original size:27 final size:27
Alignment explanation
Indices: 57057122--57057329 Score: 200
Period size: 27 Copynumber: 7.7 Consensus size: 27
57057112 TATCACATAG
* *
57057122 GGGCAAAACAGTTAATTTACCATGTAA
1 GGGCAAAACAGTTATTTTACCATATAA
* * *
57057149 AGGCAAAACAGTCATTTTACCACATAA
1 GGGCAAAACAGTTATTTTACCATATAA
* *
57057176 GGGCAAAATAGTTATTTTACCATACAA
1 GGGCAAAACAGTTATTTTACCATATAA
* * *
57057203 GGGCAAAACAATCATTTTACCACATAA
1 GGGCAAAACAGTTATTTTACCATATAA
* * * **
57057230 GGGAAAAATAATTATTTTATTATATAA
1 GGGCAAAACAGTTATTTTACCATATAA
** * *
57057257 AAGCAAAACGGTCATTTTACCATATAA
1 GGGCAAAACAGTTATTTTACCATATAA
* * *
57057284 GGGCAAAATAGTCATTTTACCACATAA
1 GGGCAAAACAGTTATTTTACCATATAA
* *
57057311 GGGCAAAACAATCATTTTA
1 GGGCAAAACAGTTATTTTA
57057330 TCAATTAGGG
Statistics
Matches: 144, Mismatches: 37, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.27
Consensus pattern (27 bp):
GGGCAAAACAGTTATTTTACCATATAA
Found at i:57057180 original size:54 final size:54
Alignment explanation
Indices: 57057115--57057329 Score: 268
Period size: 54 Copynumber: 4.0 Consensus size: 54
57057105 AAACATATAT
* * * * *
57057115 CACATAGGGGCAAAACAGTTAATTTACCATGTAAAGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTTATTTTACCATATAAAGGCAAAACAATCATTTTAC
* *
57057169 CACATAAGGGCAAAATAGTTATTTTACCATACAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAATAGTTATTTTACCATATAAAGGCAAAACAATCATTTTAC
* * ** * **
57057223 CACATAAGGGAAAAATAATTATTTTATTATATAAAAGCAAAACGGTCATTTTAC
1 CACATAAGGGCAAAATAGTTATTTTACCATATAAAGGCAAAACAATCATTTTAC
* * * *
57057277 CATATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAACAATCATTTTA
1 CACATAAGGGCAAAATAGTTATTTTACCATATAAAGGCAAAACAATCATTTTA
57057330 TCAATTAGGG
Statistics
Matches: 134, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 134 1.00
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.27
Consensus pattern (54 bp):
CACATAAGGGCAAAATAGTTATTTTACCATATAAAGGCAAAACAATCATTTTAC
Found at i:57057263 original size:81 final size:81
Alignment explanation
Indices: 57057178--57057330 Score: 225
Period size: 81 Copynumber: 1.9 Consensus size: 81
57057168 CCACATAAGG
* * * *
57057178 GCAAAATAGTTATTTTACCATACAAGGGCAAAACAATCATTTTACCACATAAGGGAAAAATAATT
1 GCAAAACAGTCATTTTACCATACAAGGGCAAAACAATCATTTTACCACATAAGGGAAAAACAATC
57057243 ATTTTATTATATAAAA
66 ATTTTATTATATAAAA
* * * * *
57057259 GCAAAACGGTCATTTTACCATATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAACAATC
1 GCAAAACAGTCATTTTACCATACAAGGGCAAAACAATCATTTTACCACATAAGGGAAAAACAATC
57057324 ATTTTAT
66 ATTTTAT
57057331 CAATTAGGGG
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (81 bp):
GCAAAACAGTCATTTTACCATACAAGGGCAAAACAATCATTTTACCACATAAGGGAAAAACAATC
ATTTTATTATATAAAA
Found at i:57061625 original size:29 final size:29
Alignment explanation
Indices: 57061552--57061729 Score: 178
Period size: 29 Copynumber: 6.0 Consensus size: 29
57061542 GTGTGCTAAA
* *
57061552 CGATGATCGTAACCATCCCTTTTCATTAAT
1 CGATGGTCGTCACCATCCCTTTTCA-TAAT
*
57061582 CGATGGTCGTCACCATCCCTTTTCATAGT
1 CGATGGTCGTCACCATCCCTTTTCATAAT
* *
57061611 TGATGGTCATCACCATCCCTTTTCATAAT
1 CGATGGTCGTCACCATCCCTTTTCATAAT
* * *
57061640 CGATAGCCGT-AGCTATCCCTTTTCATAAT
1 CGATGGTCGTCA-CCATCCCTTTTCATAAT
* * * *
57061669 CGATAGTCGTCACCATCCATTTTTTTATAGT
1 CGATGGTCGTCACCATCC--CTTTTCATAAT
** *
57061700 TTATGGTCCTCACCATCCCTTTTCATAAT
1 CGATGGTCGTCACCATCCCTTTTCATAAT
57061729 C
1 C
57061730 AATAGTCGAA
Statistics
Matches: 120, Mismatches: 24, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
28 1 0.01
29 73 0.61
30 24 0.20
31 22 0.18
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.38
Consensus pattern (29 bp):
CGATGGTCGTCACCATCCCTTTTCATAAT
Found at i:57061717 original size:89 final size:88
Alignment explanation
Indices: 57061566--57061755 Score: 274
Period size: 89 Copynumber: 2.1 Consensus size: 88
57061556 GATCGTAACC
*
57061566 ATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCATCACCATCCCT
1 ATCCCTTTTCATTAATCGATAGTCGTCACCATCCCTTTTCATAGTTGATGGTCATCACCATCCCT
* *
57061631 TTTCATAATCGATAGCCGTAGCT
66 TTTCATAATCAATAGCCGAAGCT
* * * *
57061654 ATCCCTTTTCA-TAATCGATAGTCGTCACCATCCATTTTTTTATAGTTTATGGTCCTCACCATCC
1 ATCCCTTTTCATTAATCGATAGTCGTCACCATCC--CTTTTCATAGTTGATGGTCATCACCATCC
*
57061718 CTTTTCATAATCAATAGTCGAAGCT
64 CTTTTCATAATCAATAGCCGAAGCT
*
57061743 ATCCCTTTCCATT
1 ATCCCTTTTCATT
57061756 GGTCGATGAT
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
87 21 0.23
88 11 0.12
89 57 0.63
90 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.11, T:0.38
Consensus pattern (88 bp):
ATCCCTTTTCATTAATCGATAGTCGTCACCATCCCTTTTCATAGTTGATGGTCATCACCATCCCT
TTTCATAATCAATAGCCGAAGCT
Found at i:57064125 original size:16 final size:16
Alignment explanation
Indices: 57064104--57064145 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
57064094 AAAAACCCTA
57064104 AAAGCCCAAAGAATCC
1 AAAGCCCAAAGAATCC
*
57064120 AAAGCCCAAAGAATTC
1 AAAGCCCAAAGAATCC
57064136 AAAGCCCAAA
1 AAAGCCCAAA
57064146 AACCTAAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.52, C:0.29, G:0.12, T:0.07
Consensus pattern (16 bp):
AAAGCCCAAAGAATCC
Found at i:57070907 original size:37 final size:37
Alignment explanation
Indices: 57070854--57070956 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
57070844 CGAATAGTCC
* *
57070854 CCACACGTAGTTATCGGGTCTTACCCGGGCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
57070891 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
57070928 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
57070957 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:57071158 original size:48 final size:48
Alignment explanation
Indices: 57071097--57071482 Score: 700
Period size: 48 Copynumber: 8.0 Consensus size: 48
57071087 ATATACACAC
* *
57071097 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
57071145 ATCTCATATATATTTCACATTAGCCGTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
57071193 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
57071241 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
57071289 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
57071337 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57071385 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57071433 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
57071481 AT
1 AT
57071483 ATATTTATCT
Statistics
Matches: 329, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 329 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:57074578 original size:27 final size:27
Alignment explanation
Indices: 57074560--57074745 Score: 232
Period size: 27 Copynumber: 6.9 Consensus size: 27
57074550 CTCAATTTGT
*
57074560 AGAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* *
57074587 AGAATTACCGTTTCACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
57074614 AAAATTA-CAGTTTTACCCTCGATTTAT
1 AGAATTACCA-TTTTACCCTCGATTTAC
57074641 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
57074668 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
57074695 AAAATTACTATTTTACCCT-TAGTTTAC
1 AGAATTACCATTTTACCCTCGA-TTTAC
* ***
57074722 AAAATTATTGTTTTACCCTCGATT
1 AGAATTACCATTTTACCCTCGATT
57074746 GTGAAATTAC
Statistics
Matches: 140, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
26 2 0.01
27 135 0.96
28 3 0.02
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:57074663 original size:81 final size:81
Alignment explanation
Indices: 57074548--57074745 Score: 272
Period size: 81 Copynumber: 2.4 Consensus size: 81
57074538 TACTGAAATG
* * *
57074548 CCCTCAATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCGATTTA
57074613 CAAAATTAC-AGTTTTA
66 CAAAATTACTA-TTTTA
* *
57074629 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCGATTTA
57074694 CAAAATTACTATTTTA
66 CAAAATTACTATTTTA
* * * * ***
57074710 CCCTTAGTTTACAAAATTATTGTTTTACCCTCGATT
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATT
57074746 GTGAAATTAC
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 102 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCGATTTA
CAAAATTACTATTTTA
Found at i:57074779 original size:27 final size:27
Alignment explanation
Indices: 57074749--57074876 Score: 105
Period size: 27 Copynumber: 4.7 Consensus size: 27
57074739 CTCGATTGTG
*
57074749 AAATTACTGAAATACCCCTA-TAAGATA
1 AAATTACCGAAATACCCCTAGTAAG-TA
* **
57074776 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCGAAATACCCCTAGTAAGTA
* * ** *
57074803 AAATTACCGAAATACCACTGGTTTGTG
1 AAATTACCGAAATACCCCTAGTAAGTA
* * * **
57074830 AAATTATCGAAATACCCTTAATTTGTA
1 AAATTACCGAAATACCCCTAGTAAGTA
*
57074857 AAATTACCAAAATACCCCTA
1 AAATTACCGAAATACCCCTA
57074877 ATTTACAAAA
Statistics
Matches: 83, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
27 81 0.98
28 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCCTAGTAAGTA
Found at i:57074818 original size:54 final size:53
Alignment explanation
Indices: 57074744--57074876 Score: 140
Period size: 54 Copynumber: 2.5 Consensus size: 53
57074734 TTACCCTCGA
* * *
57074744 TTGTGAAATTACTGAAATACCCCTATAAGATAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCGAAATACCCCTATAAG-TAAAATTACCAAAATACCCCTAAT
* * ** * * * *
57074798 TTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTATCGAAATACCCTTAAT
1 TTGTAAAATTACCGAAATACCCCT-ATAAGTAAAATTACCAAAATACCCCTAAT
*
57074852 TTGTAAAATTACCAAAATACCCCTA
1 TTGTAAAATTACCGAAATACCCCTA
57074877 ATTTACAAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
54 62 0.97
55 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.30
Consensus pattern (53 bp):
TTGTAAAATTACCGAAATACCCCTATAAGTAAAATTACCAAAATACCCCTAAT
Found at i:57074860 original size:81 final size:81
Alignment explanation
Indices: 57074744--57074899 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 81
57074734 TTACCCTCGA
* **
57074744 TTGTGAAATTACTGAAATACCCCTATAAGATAAAATTACCAAAATACCCCTAGTTTGTAAAATTA
1 TTGTGAAATTACTGAAATACCCCTATAAGATAAAATTACCAAAATACCCCTAATTTACAAAATTA
**
57074809 CCGAAATACCACTGGT
66 CAAAAATACCACTGGT
* **
57074825 TTGTGAAATTA-TCGAAATACCCTTAATTTG-TAAAATTACCAAAATACCCCTAATTTACAAAAT
1 TTGTGAAATTACT-GAAATACCCCT-ATAAGATAAAATTACCAAAATACCCCTAATTTACAAAAT
57074888 TACAAAAATACC
64 TACAAAAATACC
57074900 CTTGACTTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
80 1 0.02
81 61 0.94
82 3 0.05
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.29
Consensus pattern (81 bp):
TTGTGAAATTACTGAAATACCCCTATAAGATAAAATTACCAAAATACCCCTAATTTACAAAATTA
CAAAAATACCACTGGT
Found at i:57074878 original size:27 final size:27
Alignment explanation
Indices: 57074774--57074900 Score: 146
Period size: 27 Copynumber: 4.7 Consensus size: 27
57074764 CCCTATAAGA
*
57074774 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAATTTG
* * **
57074801 TAAAATTACCGAAATACCACTGGTTTG
1 TAAAATTACCAAAATACCCCTAATTTG
* * * *
57074828 TGAAATTATCGAAATACCCTTAATTTG
1 TAAAATTACCAAAATACCCCTAATTTG
*
57074855 TAAAATTACCAAAATACCCCTAATTTA
1 TAAAATTACCAAAATACCCCTAATTTG
* *
57074882 CAAAATTACAAAAATACCC
1 TAAAATTACCAAAATACCC
57074901 TTGACTTTCT
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.29
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTAATTTG
Found at i:57074888 original size:54 final size:54
Alignment explanation
Indices: 57074775--57074958 Score: 172
Period size: 54 Copynumber: 3.4 Consensus size: 54
57074765 CCTATAAGAT
* * * * **
57074775 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGTTTGT
1 AAAATTACAAAAATACCCTTAATTTGTAAAATTACCAAAATACCACTGGTTTAC
* * * **
57074829 GAAATTATC-GAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTAC
1 AAAATTA-CAAAAATACCCTTAATTTGTAAAATTACCAAAATACCACTGGTTTAC
* * ** *
57074883 AAAATTACAAAAATACCCTTGACTTTCTAAAAATTATAAAAATACCATTGGTTTAC
1 AAAATTACAAAAATACCCTT-AATTTGT-AAAATTACCAAAATACCACTGGTTTAC
**
57074939 AAAATTACTGAAATACCCTT
1 AAAATTACAAAAATACCCTT
57074959 GGTTTGTAGA
Statistics
Matches: 104, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
53 1 0.01
54 58 0.56
55 6 0.06
56 39 0.38
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (54 bp):
AAAATTACAAAAATACCCTTAATTTGTAAAATTACCAAAATACCACTGGTTTAC
Found at i:57075059 original size:27 final size:27
Alignment explanation
Indices: 57075004--57075081 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
57074994 AAATGACTAA
* * *
57075004 AATACCCCTAATA-GGTAAAAAGACTGT
1 AATACCCCT-GTAGGGTAAAATGACCGT
*
57075031 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAATGACCGT
* *
57075058 AATACCCTTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
57075082 AAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.07
27 37 0.90
28 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:57075813 original size:20 final size:20
Alignment explanation
Indices: 57075788--57075874 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
57075778 GATATGATAT
*
57075788 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
57075808 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
*
57075828 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
57075848 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
57075868 ACATGAT
1 ACATGAT
57075875 GTATTCATAA
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:57076002 original size:52 final size:51
Alignment explanation
Indices: 57075924--57076059 Score: 233
Period size: 52 Copynumber: 2.7 Consensus size: 51
57075914 GAGGAAGTGC
57075924 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
57075976 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
57076027 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
57076060 AAGCCTCCAG
Statistics
Matches: 83, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 8 0.10
51 25 0.30
52 36 0.43
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:57076021 original size:25 final size:26
Alignment explanation
Indices: 57075924--57076059 Score: 199
Period size: 26 Copynumber: 5.3 Consensus size: 26
57075914 GAGGAAGTGC
57075924 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
57075950 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
57075976 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
57076002 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
57076027 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
57076050 AAAAGAGGCT
1 AAAAG-GGCT
57076060 AAGCCTCCAG
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 31 0.31
26 58 0.57
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:57076251 original size:42 final size:42
Alignment explanation
Indices: 57076192--57076283 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
57076182 TAGTCTCCCC
* ** *
57076192 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
57076234 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
57076276 AAATGGGC
1 AAATGGGC
57076284 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:57076342 original size:31 final size:31
Alignment explanation
Indices: 57076307--57076385 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
57076297 CGTTTACAGT
57076307 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
57076338 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
57076369 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
57076386 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:57083945 original size:21 final size:21
Alignment explanation
Indices: 57083919--57083961 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
57083909 GGTTTCCTTC
57083919 ACCAAGCCTAAACCGAACTCA
1 ACCAAGCCTAAACCGAACTCA
*
57083940 ACCAAGCCTAAATCGAACTCA
1 ACCAAGCCTAAACCGAACTCA
57083961 A
1 A
57083962 AGGGCCTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.35, G:0.09, T:0.12
Consensus pattern (21 bp):
ACCAAGCCTAAACCGAACTCA
Found at i:57087861 original size:26 final size:26
Alignment explanation
Indices: 57087821--57087870 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
57087811 AGTGGCCGGG
57087821 TTGACCAACTAGTTCTATTAACTAAT
1 TTGACCAACTAGTTCTATTAACTAAT
*
57087847 TTGACCAACTGGTTCTATTAACTA
1 TTGACCAACTAGTTCTATTAACTA
57087871 TTTATTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (26 bp):
TTGACCAACTAGTTCTATTAACTAAT
Found at i:57088788 original size:15 final size:16
Alignment explanation
Indices: 57088768--57088801 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
57088758 AATCCTTTAA
57088768 AAATTATAAAAAT-AT
1 AAATTATAAAAATGAT
*
57088783 AAATTATTAAAATGAT
1 AAATTATAAAAATGAT
57088799 AAA
1 AAA
57088802 ATTGTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (16 bp):
AAATTATAAAAATGAT
Found at i:57092855 original size:20 final size:19
Alignment explanation
Indices: 57092832--57092896 Score: 87
Period size: 20 Copynumber: 3.4 Consensus size: 19
57092822 AAAATTACAA
57092832 AAAAAATTTAAAATAATTT
1 AAAAAATTTAAAATAATTT
57092851 GAAAAAATTTAAAATAATTT
1 -AAAAAATTTAAAATAATTT
**
57092871 TTAAAATTTAAAAT-ATTT
1 AAAAAATTTAAAATAATTT
57092889 ATAAAAAT
1 A-AAAAAT
57092897 AAAAATTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
18 4 0.10
19 17 0.43
20 19 0.47
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAAAATTTAAAATAATTT
Found at i:57092895 original size:19 final size:20
Alignment explanation
Indices: 57092833--57092896 Score: 89
Period size: 19 Copynumber: 3.3 Consensus size: 20
57092823 AAATTACAAA
57092833 AAAAATTTAAAATAATTTGA-
1 AAAAATTTAAAATAATTT-AT
57092853 AAAAATTTAAAATAATTT-T
1 AAAAATTTAAAATAATTTAT
*
57092872 TAAAATTTAAAAT-ATTTAT
1 AAAAATTTAAAATAATTTAT
57092891 AAAAAT
1 AAAAAT
57092897 AAAAATTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.10
19 18 0.45
20 18 0.45
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
AAAAATTTAAAATAATTTAT
Found at i:57092906 original size:17 final size:17
Alignment explanation
Indices: 57092866--57092908 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
57092856 AATTTAAAAT
* *
57092866 AATTTT-TAAAATTTAA
1 AATTTTATAAAAATAAA
57092882 AATATTTATAAAAATAAA
1 AAT-TTTATAAAAATAAA
57092900 AATTTTATA
1 AATTTTATA
57092909 TTTTTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 3 0.13
17 9 0.39
18 11 0.48
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTTTATAAAAATAAA
Found at i:57095581 original size:21 final size:21
Alignment explanation
Indices: 57095555--57095608 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
57095545 GTTTAAGCCT
57095555 CACACGTCCGTGGAGGCAATG
1 CACACGTCCGTGGAGGCAATG
*
57095576 CACACGCCCGTGGAGGCAATG
1 CACACGTCCGTGGAGGCAATG
57095597 CACACGTCCGTG
1 CACACGTCCGTG
57095609 TGCTTTGGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.22, C:0.33, G:0.31, T:0.13
Consensus pattern (21 bp):
CACACGTCCGTGGAGGCAATG
Found at i:57097269 original size:27 final size:26
Alignment explanation
Indices: 57097207--57097348 Score: 149
Period size: 27 Copynumber: 5.3 Consensus size: 26
57097197 AGCATGGCTG
* *
57097207 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
57097233 CTAAATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
57097261 CCAGAACAGATATATATGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
57097288 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
57097315 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
57097342 CCAGAAC
1 CCAGAAC
57097349 GCTTCCTCCA
Statistics
Matches: 101, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.03
27 83 0.82
28 15 0.15
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:57097298 original size:54 final size:55
Alignment explanation
Indices: 57097207--57097346 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 55
57097197 AGCATGGCTG
* * * *
57097207 CCAGAACAGATA-ATGTGACAGAGTCACTAAATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
57097261 CCAGAACAGATATATATGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
57097315 CCAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGA
57097347 ACGCTTCCTC
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 59 0.80
55 15 0.20
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (55 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:57098974 original size:26 final size:26
Alignment explanation
Indices: 57098938--57099047 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
57098928 CATGAAATTC
57098938 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
57098964 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
57098990 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
57099016 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
57099042 TTATCA
1 TTATCA
57099048 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:57104181 original size:40 final size:40
Alignment explanation
Indices: 57104132--57104339 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
57104122 TCTTCGGAAT
* *
57104132 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
57104171 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
57104211 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
57104251 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
57104291 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
57104331 TTAGCCCGG
1 TTAGCCCGG
57104340 GTATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 5 0.03
40 136 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:57112279 original size:40 final size:40
Alignment explanation
Indices: 57112230--57112437 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
57112220 TCTTCGGAAT
* *
57112230 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
57112269 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
57112309 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
57112349 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
57112389 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
57112429 TTAGCCCGG
1 TTAGCCCGG
57112438 GTATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 5 0.03
40 136 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:57119564 original size:20 final size:21
Alignment explanation
Indices: 57119524--57119572 Score: 91
Period size: 20 Copynumber: 2.4 Consensus size: 21
57119514 AGTCCATAAA
57119524 ATCACATTTCATAATCTCAAT
1 ATCACATTTCATAATCTCAAT
57119545 ATCACATTTCATAA-CTCAAT
1 ATCACATTTCATAATCTCAAT
57119565 ATCACATT
1 ATCACATT
57119573 CACTTCAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (21 bp):
ATCACATTTCATAATCTCAAT
Found at i:57120514 original size:2 final size:2
Alignment explanation
Indices: 57120507--57120536 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
57120497 TCTCAATGAC
57120507 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
57120537 CTTTGACAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:57120608 original size:31 final size:31
Alignment explanation
Indices: 57120573--57120636 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
57120563 ATTTAACCCC
57120573 ATATTTTCAAAATTTTCCATAATAATCCTCA
1 ATATTTTCAAAATTTTCCATAATAATCCTCA
*
57120604 ATATTTTCAAAATTTTCCATAATAATCTTCA
1 ATATTTTCAAAATTTTCCATAATAATCCTCA
57120635 AT
1 AT
57120637 GTACAATTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44
Consensus pattern (31 bp):
ATATTTTCAAAATTTTCCATAATAATCCTCA
Found at i:57126786 original size:47 final size:47
Alignment explanation
Indices: 57126717--57126813 Score: 194
Period size: 47 Copynumber: 2.1 Consensus size: 47
57126707 GATGACTAAG
57126717 TCACTTCCTATAACCAAGTTTGAGCATTGCTTAGACTTGGTTGGTGT
1 TCACTTCCTATAACCAAGTTTGAGCATTGCTTAGACTTGGTTGGTGT
57126764 TCACTTCCTATAACCAAGTTTGAGCATTGCTTAGACTTGGTTGGTGT
1 TCACTTCCTATAACCAAGTTTGAGCATTGCTTAGACTTGGTTGGTGT
57126811 TCA
1 TCA
57126814 TTGTTGAACT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.38
Consensus pattern (47 bp):
TCACTTCCTATAACCAAGTTTGAGCATTGCTTAGACTTGGTTGGTGT
Found at i:57133137 original size:40 final size:40
Alignment explanation
Indices: 57133052--57133233 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
57133042 AACCCAAGTA
* * * *
57133052 CCTTCGGGAATTAG-CCAGATACAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
57133091 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
57133131 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
57133171 CCTTCGGGACTTAGGCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
57133211 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
57133234 CATCCGAATA
Statistics
Matches: 128, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 12 0.09
40 115 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:57141020 original size:40 final size:40
Alignment explanation
Indices: 57140946--57141127 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
57140936 AACCCAAGTA
* *
57140946 CCTTCGGGAATTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
57140985 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
57141025 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
57141065 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
57141105 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
57141128 CATCCGAATA
Statistics
Matches: 134, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 12 0.09
40 121 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:57148009 original size:40 final size:40
Alignment explanation
Indices: 57147935--57148116 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
57147925 AACCCAAGTA
* *
57147935 CCTTCGGGAATTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
57147974 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
57148014 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
57148054 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
57148094 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
57148117 CATCCGAATA
Statistics
Matches: 134, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 12 0.09
40 121 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:57151230 original size:12 final size:12
Alignment explanation
Indices: 57151213--57151245 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
57151203 GGAGATCCGA
*
57151213 AGCTAGAGCACT
1 AGCTAGAGCACC
57151225 AGCTAGAGCACC
1 AGCTAGAGCACC
57151237 AGCTAGAGC
1 AGCTAGAGC
57151246 TTGCGCTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.33, C:0.27, G:0.27, T:0.12
Consensus pattern (12 bp):
AGCTAGAGCACC
Found at i:57155692 original size:42 final size:43
Alignment explanation
Indices: 57155611--57155703 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 43
57155601 TCCCAGATGT
*
57155611 GGTCTTACATGTAATCAAACATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATGAAATCAAACATCGATGCCACTGTCCCAGACAG
* * * *
57155654 GGTCTTACATGAAATCAGATA-CGATGCTGA-TGTCCCAGACAT
1 GGTCTTACATGAAATCAAACATCGATGC-CACTGTCCCAGACAG
57155696 GGTCTTAC
1 GGTCTTAC
57155704 GCGTAAAGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
42 25 0.57
43 19 0.43
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAACATCGATGCCACTGTCCCAGACAG
Found at i:57157349 original size:39 final size:39
Alignment explanation
Indices: 57157231--57157413 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
57157221 TCGTTCAAAC
* * ** * **
57157231 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
57157271 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
57157311 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
57157350 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
57157389 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
57157414 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:57164783 original size:39 final size:39
Alignment explanation
Indices: 57164665--57164847 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
57164655 TCGTTCAAAC
* * ** * **
57164665 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
57164705 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
57164745 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
57164784 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
57164823 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
57164848 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:57186949 original size:29 final size:29
Alignment explanation
Indices: 57186907--57186965 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
57186897 CCATTTTTAC
57186907 TTAAATTCATGCAAATCCGGTTAAATTCT
1 TTAAATTCATGCAAATCCGGTTAAATTCT
57186936 TTAAATTCATGCAAATCCGGTTAAATTCT
1 TTAAATTCATGCAAATCCGGTTAAATTCT
57186965 T
1 T
57186966 GTCAAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (29 bp):
TTAAATTCATGCAAATCCGGTTAAATTCT
Found at i:57196955 original size:55 final size:55
Alignment explanation
Indices: 57196870--57197007 Score: 150
Period size: 55 Copynumber: 2.5 Consensus size: 55
57196860 CGACATGGCT
* * * * *
57196870 GTGGTCGAGCCTGACAAAACAACACGGGCATGCAACACGCCCGTGTAGAAGAACC
1 GTGGACGAACCTGTCAAACCAACACGGGCATGCAACACGCCCGTGTAGAACAACC
* * * ** *
57196925 GTGGACGAACCTGTTAAACCAACACGGGCATGCGACACGCTCGTGTCTAACACCC
1 GTGGACGAACCTGTCAAACCAACACGGGCATGCAACACGCCCGTGTAGAACAACC
* **
57196980 GTGGTCGAACCTGTCAAATTAACACGGG
1 GTGGACGAACCTGTCAAACCAACACGGG
57197008 TGTGGGGCTT
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 68 1.00
ACGTcount: A:0.30, C:0.29, G:0.26, T:0.15
Consensus pattern (55 bp):
GTGGACGAACCTGTCAAACCAACACGGGCATGCAACACGCCCGTGTAGAACAACC
Found at i:57200628 original size:40 final size:39
Alignment explanation
Indices: 57200463--57200646 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
57200453 AAATTGAATG
* * *
57200463 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
57200503 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
57200543 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
57200583 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
57200622 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
57200647 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:57200629 original size:80 final size:80
Alignment explanation
Indices: 57200507--57200691 Score: 183
Period size: 80 Copynumber: 2.3 Consensus size: 80
57200497 GAAATTATAA
* * * *
57200507 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
57200572 TGCGAGTCATTCTAT
66 TGCGAGTCATTCTAT
* * * * * * *
57200587 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTC
* * * * *
57200651 GTGCGGGTTACTATAA
65 GTGCGAGTCATTCTAT
* * *
57200667 CCGGGCTATGTCCCGAAGGCGATTG
1 CCGGGCTAAGACCCGAAGGCAATTG
57200692 ATCGAGTAGC
Statistics
Matches: 84, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
79 1 0.01
80 83 0.99
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATTCTAT
Found at i:57208670 original size:22 final size:21
Alignment explanation
Indices: 57208638--57208688 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
57208628 AATAAGAAGA
57208638 TAATC-TT-TAATATATA-AT
1 TAATCTTTATAATATATATAT
57208656 TATATCTATTATAATATATATAT
1 TA-ATCT-TTATAATATATATAT
57208679 TAATCTTTAT
1 TAATCTTTAT
57208689 CAATTAGCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
18 2 0.07
19 3 0.11
21 6 0.21
22 13 0.46
23 4 0.14
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (21 bp):
TAATCTTTATAATATATATAT
Found at i:57212240 original size:17 final size:16
Alignment explanation
Indices: 57212220--57212252 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
57212210 TTCTTGTCGA
57212220 AAAATAATTAAAATTAT
1 AAAATAATT-AAATTAT
57212237 AAAATAATTAAATTAT
1 AAAATAATTAAATTAT
57212253 GTTAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAATAATTAAATTAT
Found at i:57216645 original size:6 final size:6
Alignment explanation
Indices: 57216630--57216659 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
57216620 TTTGAGTCCC
57216630 TTTA-T TTTATT TTTATT TTTATT TTTATT T
1 TTTATT TTTATT TTTATT TTTATT TTTATT T
57216660 AAAATTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTATT
Found at i:57218943 original size:16 final size:17
Alignment explanation
Indices: 57218917--57218950 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
57218907 GATAACCTCT
57218917 TTGATTTATATGATAAA
1 TTGATTTATATGATAAA
57218934 TTGA-TTATATGATAAA
1 TTGATTTATATGATAAA
57218950 T
1 T
57218951 ACTTGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (17 bp):
TTGATTTATATGATAAA
Found at i:57219436 original size:18 final size:18
Alignment explanation
Indices: 57219415--57219453 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
57219405 TCTTAGTTAA
57219415 TTAGATAATTAGTTTAGT
1 TTAGATAATTAGTTTAGT
57219433 TTAGATAATTAGTTTAGT
1 TTAGATAATTAGTTTAGT
57219451 TTA
1 TTA
57219454 CAACATTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51
Consensus pattern (18 bp):
TTAGATAATTAGTTTAGT
Found at i:57225490 original size:40 final size:39
Alignment explanation
Indices: 57225322--57225492 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
57225312 AGAAATTGAA
* *
57225322 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
57225362 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
57225402 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
57225442 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
57225482 TGATATCCGGG
1 TGATATCCGGG
57225493 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:57233528 original size:40 final size:39
Alignment explanation
Indices: 57233360--57233530 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
57233350 AGAAATTGAA
* *
57233360 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
57233400 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
57233440 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
57233480 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
57233520 TGATATCCGGG
1 TGATATCCGGG
57233531 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:57235080 original size:34 final size:33
Alignment explanation
Indices: 57235042--57235113 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
57235032 CCCCCTTTTC
57235042 CAGTAACAATCG-CAGTCTAGGCCTAAGCCCATTT
1 CAGTAACAAT-GACAGT-TAGGCCTAAGCCCATTT
* * *
57235076 CAGTAATAGTGACAGTTGGGCCTAAGCCCATTT
1 CAGTAACAATGACAGTTAGGCCTAAGCCCATTT
57235109 CAGTA
1 CAGTA
57235114 CAGTATACAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 22 0.65
34 12 0.35
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (33 bp):
CAGTAACAATGACAGTTAGGCCTAAGCCCATTT
Found at i:57236649 original size:21 final size:22
Alignment explanation
Indices: 57236625--57236667 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
57236615 AGAGATGAAA
*
57236625 GAAAACAAAGATTGG-AGAGAG
1 GAAAACAAAGAATGGAAGAGAG
*
57236646 GAAAGCAAAGAATGGAAGAGAG
1 GAAAACAAAGAATGGAAGAGAG
57236668 TAGAGTAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.53, C:0.05, G:0.35, T:0.07
Consensus pattern (22 bp):
GAAAACAAAGAATGGAAGAGAG
Found at i:57255756 original size:76 final size:75
Alignment explanation
Indices: 57255623--57255870 Score: 259
Period size: 76 Copynumber: 3.3 Consensus size: 75
57255613 GGTGTACCCT
** * * *
57255623 GCACTAGTCGGATAAACTGACAATGTTTTGTACCCAACGCTAGTTA-TATAACTTGACGATATCA
1 GCACTAGTCGGATAAACTGACAATGTTTTGCGCCCAACGCTAGTCAGAAAAAC-TGACGATATCA
57255687 AATGTGTGTCCA
65 AATGTGTG-CCA
* *
57255699 GCACTAG-CTGGATAAACCGATAATGTTTTGCGCCCAACGCTAGTCAGAAAAACTGACGATATCA
1 GCACTAGTC-GGATAAACTGACAATGTTTTGCGCCCAACGCTAGTCAGAAAAACTGACGATATCA
* *
57255763 AATGTATGCCC
65 AATGTGTGCCA
* *** * * * *
57255774 GACACTAGTCAGATAAACTGACAATAAATTGCGCCTAGCACTAGTC-GAATAAACCGACGATATC
1 G-CACTAGTCGGATAAACTGACAATGTTTTGCGCCCAACGCTAGTCAGAA-AAACTGACGATATC
57255838 AAATGTGTGCCCA
64 AAATGTGTG-CCA
*
57255851 GCACTAGTCGAATAAACTGA
1 GCACTAGTCGGATAAACTGA
57255871 AAATACATAC
Statistics
Matches: 143, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
75 7 0.05
76 128 0.90
77 8 0.06
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (75 bp):
GCACTAGTCGGATAAACTGACAATGTTTTGCGCCCAACGCTAGTCAGAAAAACTGACGATATCAA
ATGTGTGCCA
Found at i:57255782 original size:40 final size:39
Alignment explanation
Indices: 57255738--57255870 Score: 138
Period size: 40 Copynumber: 3.4 Consensus size: 39
57255728 GCGCCCAACG
57255738 CTAGTCAGAA-AAACTGACGATATCAAATGTATGCCC-GACA
1 CTAGTC-GAATAAACTGACGATATCAAATGT-TGCCCAG-CA
57255778 CTAGTC-AGATAAACTGAC-A-AT-AAA--TTGCGCCTAGCA
1 CTAGTCGA-ATAAACTGACGATATCAAATGTTGC-CC-AGCA
*
57255814 CTAGTCGAATAAACCGACGATATCAAATGTGTGCCCAGCA
1 CTAGTCGAATAAACTGACGATATCAAATGT-TGCCCAGCA
57255854 CTAGTCGAATAAACTGA
1 CTAGTCGAATAAACTGA
57255871 AAATACATAC
Statistics
Matches: 79, Mismatches: 2, Indels: 24
0.75 0.02 0.23
Matches are distributed among these distances:
34 3 0.04
35 3 0.04
36 17 0.22
37 6 0.08
38 5 0.06
39 5 0.06
40 34 0.43
41 3 0.04
42 3 0.04
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (39 bp):
CTAGTCGAATAAACTGACGATATCAAATGTTGCCCAGCA
Found at i:57255826 original size:36 final size:37
Alignment explanation
Indices: 57255727--57255875 Score: 117
Period size: 40 Copynumber: 3.9 Consensus size: 37
57255717 GATAATGTTT
* *
57255727 TGCGCCCAACGCTAGTCAGAA-AAACTGACGATATCAAATG
1 TGCGCCCAGCACTAGTC-GAATAAACTGAC-A-AT-AAATG
**
57255767 TATGCCC-GACACTAGTC-AGATAAACTGACAATAAAT-
1 TGCGCCCAG-CACTAGTCGA-ATAAACTGACAATAAATG
* *
57255803 TGCGCCTAGCACTAGTCGAATAAACCGACGATATCAAATG
1 TGCGCCCAGCACTAGTCGAATAAACTGAC-A-AT-AAATG
* *
57255843 TGTGCCCAGCACTAGTCGAATAAACTGAAAATA
1 TGCGCCCAGCACTAGTCGAATAAACTGACAATA
57255876 CATACATAAT
Statistics
Matches: 88, Mismatches: 12, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
36 21 0.24
37 8 0.09
38 7 0.08
39 7 0.08
40 45 0.51
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.20
Consensus pattern (37 bp):
TGCGCCCAGCACTAGTCGAATAAACTGACAATAAATG
Found at i:57259447 original size:42 final size:42
Alignment explanation
Indices: 57259400--57259480 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
57259390 AAATAAGTAT
57259400 ATCTAACAATCAAGCTTCCAACAAAACCAATTAGCATCAAAG
1 ATCTAACAATCAAGCTTCCAACAAAACCAATTAGCATCAAAG
*
57259442 ATCTAACAATCAAGCTTCTAACAAAACCAATTAGCATCA
1 ATCTAACAATCAAGCTTCCAACAAAACCAATTAGCATCA
57259481 GAGACATTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.47, C:0.26, G:0.06, T:0.21
Consensus pattern (42 bp):
ATCTAACAATCAAGCTTCCAACAAAACCAATTAGCATCAAAG
Found at i:57264004 original size:76 final size:75
Alignment explanation
Indices: 57263826--57264004 Score: 180
Period size: 76 Copynumber: 2.3 Consensus size: 75
57263816 TTTTGTGCAT
* * * *** *
57263826 AGCGCTAGTCGGATAAACCAATGATATCAAATGTGTGCCCAACATTAGTTGGATAAACCGACAAT
1 AGCGCTAGTAGGATAAACCAA-AATATCAAATGTGTGCCCAACACTAGTCAAATAAACCAACAAT
57263891 GTTTTGCGCCC
65 GTTTTGCGCCC
* * * *
57263902 AGCGCTAATAGGATAAATCGACAATATCAAATGTGTG-CCAAGCACTAGTCAAATTAACCAACAA
1 AGCGCTAGTAGGATAAA-CCAAAATATCAAATGTGTGCCCAA-CACTAGTCAAATAAACCAACAA
*
57263966 TGATTTTGTGCCC
64 TG-TTTTGCGCCC
* * *
57263979 AGTGCTAGTTGAATAAACCAAAATAT
1 AGCGCTAGTAGGATAAACCAAAATAT
57264005 ACATACATAA
Statistics
Matches: 82, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
75 4 0.05
76 54 0.66
77 24 0.29
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (75 bp):
AGCGCTAGTAGGATAAACCAAAATATCAAATGTGTGCCCAACACTAGTCAAATAAACCAACAATG
TTTTGCGCCC
Found at i:57268265 original size:39 final size:40
Alignment explanation
Indices: 57268221--57268315 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
57268211 TATCTCGGTA
*
57268221 TCGCACACTTAGTGCC-TCAATAGCCGAAGCTATTTCAAC
1 TCGCACACTTAGTGCCATCAATAGCCAAAGCTATTTCAAC
*** * *
57268260 TCGCACACTTAGTGCCATTTGTAGCCAAATCTATTTCGAC
1 TCGCACACTTAGTGCCATCAATAGCCAAAGCTATTTCAAC
*
57268300 CCGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
57268316 GAACATAGTC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 16 0.33
40 32 0.67
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (40 bp):
TCGCACACTTAGTGCCATCAATAGCCAAAGCTATTTCAAC
Found at i:57270188 original size:3 final size:3
Alignment explanation
Indices: 57270176--57270220 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
57270166 AACACACTCC
57270176 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
57270221 TGGTTAAGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:57271466 original size:76 final size:74
Alignment explanation
Indices: 57271339--57271638 Score: 291
Period size: 76 Copynumber: 4.0 Consensus size: 74
57271329 TATTAGTGAG
* * * * *
57271339 CAAATATTTGTCG-GAATCCGACTAGTGTTGGGCATACATTTAACATCGTCGATTCATCCGACTA
1 CAAATATTTGTCGTTAATCTGACTAGTGCTAGGCACACATTTAACATCGTCGATTCATCCGACTA
57271403 GCGTAGGGCA
66 GCGT-GGGCA
* * * *
57271413 CAAATATTTGTCAGTTAATCTGACTAGTGCTGGGAACACATTTAACATTGTCGATTCATCTGACT
1 CAAATATTTGTC-GTTAATCTGACTAGTGCTAGGCACACATTTAACATCGTCGATTCATCCGACT
*
57271478 AGCACTGGGCA
65 AGC-GTGGGCA
* * *
57271489 CAAATATTTGTCGGTTAAT-TCAACTAGTGTTAGGCACACATTTAACATCGTCGGTTCATCCGAC
1 CAAATATTTGTC-GTTAATCT-GACTAGTGCTAGGCACACATTTAACATCGTCGATTCATCCGAC
* **
57271553 TAGTGCTGGATA
64 TAGCG-TGGGCA
* * * * * * *
57271565 TAAATCTTTGTCGATTAATCTGACTAGTTCTAGGCACAC-TTTTACTATTGTCGATTTATCCAAC
1 CAAATATTTGTCG-TTAATCTGACTAGTGCTAGGCACACATTTAAC-ATCGTCGATTCATCCGAC
57271629 TAGCGCTGGG
64 TAGCG-TGGG
57271639 TGCAAAATTT
Statistics
Matches: 186, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
74 12 0.06
75 8 0.04
76 164 0.88
77 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (74 bp):
CAAATATTTGTCGTTAATCTGACTAGTGCTAGGCACACATTTAACATCGTCGATTCATCCGACTA
GCGTGGGCA
Found at i:57271555 original size:40 final size:39
Alignment explanation
Indices: 57271354--57271561 Score: 128
Period size: 40 Copynumber: 5.4 Consensus size: 39
57271344 ATTTGTCGGA
* * *
57271354 ATCCGACTAGTGTTGGGCATACATTTAACATCGTCGATTC
1 ATCCGACTAGTGCTGGGCACACATTTAACAT-GTCGGTTC
* * * *
57271394 ATCCGACTAGCG-TAGGGCACAAATATT----TGTCAGTTA
1 ATCCGACTAGTGCT-GGGCACACAT-TTAACATGTCGGTTC
* * *
57271430 ATCTGACTAGTGCTGGGAACACATTTAACATTGTCGATTC
1 ATCCGACTAGTGCTGGGCACACATTTAACA-TGTCGGTTC
* ** * *
57271470 ATCTGACTAGCACTGGGCACAAATATT----TGTCGGTTA
1 ATCCGACTAGTGCTGGGCACACAT-TTAACATGTCGGTTC
* * * *
57271506 ATTCAACTAGTGTTAGGCACACATTTAACATCGTCGGTTC
1 ATCCGACTAGTGCTGGGCACACATTTAACAT-GTCGGTTC
57271546 ATCCGACTAGTGCTGG
1 ATCCGACTAGTGCTGG
57271562 ATATAAATCT
Statistics
Matches: 122, Mismatches: 32, Indels: 28
0.67 0.18 0.15
Matches are distributed among these distances:
35 4 0.03
36 46 0.38
37 2 0.02
39 2 0.02
40 64 0.52
41 4 0.03
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (39 bp):
ATCCGACTAGTGCTGGGCACACATTTAACATGTCGGTTC
Found at i:57271638 original size:152 final size:150
Alignment explanation
Indices: 57271339--57271638 Score: 372
Period size: 152 Copynumber: 2.0 Consensus size: 150
57271329 TATTAGTGAG
* * *
57271339 CAAATATTTGTCGGAATCCGACTAGTGTTGGGCATACATTTAACATCGTCGATTCATCCGACTAG
1 CAAATATTTGTCGGAATCCAACTAGTGTTAGGCACACATTTAACATCGTCGATTCATCCGACTAG
* *
57271404 CGTAGGGCACAAATATTTGTCAGTTAATCTGACTAGTGCTGGGAACACATTTAACATTGTCGATT
66 CGTAGGACACAAATATTTGTCAGTTAATCTGACTAGTGCTAGGAACACATTTAACATTGTCGATT
**
57271469 CATCTGACTAGCACTGGGCA
131 CATCCAACTAGCACTGGGCA
* *
57271489 CAAATATTTGTCGGTTAATTCAACTAGTGTTAGGCACACATTTAACATCGTCGGTTCATCCGACT
1 CAAATATTTGTCGG--AATCCAACTAGTGTTAGGCACACATTTAACATCGTCGATTCATCCGACT
* * * * * * *
57271554 AGTGCT-GGATATAAATCTTTGTC-GATTAATCTGACTAGTTCTAGGCACAC-TTTTACTATTGT
64 AGCG-TAGGACACAAATATTTGTCAG-TTAATCTGACTAGTGCTAGGAACACATTTAAC-ATTGT
* *
57271616 CGATTTATCCAACTAGCGCTGGG
126 CGATTCATCCAACTAGCACTGGG
57271639 TGCAAAATTT
Statistics
Matches: 127, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
150 14 0.11
151 6 0.05
152 106 0.83
153 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (150 bp):
CAAATATTTGTCGGAATCCAACTAGTGTTAGGCACACATTTAACATCGTCGATTCATCCGACTAG
CGTAGGACACAAATATTTGTCAGTTAATCTGACTAGTGCTAGGAACACATTTAACATTGTCGATT
CATCCAACTAGCACTGGGCA
Found at i:57273487 original size:26 final size:26
Alignment explanation
Indices: 57273457--57273509 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
57273447 TTCCTGAGAG
*
57273457 AGTGTTAATTGTGTTGTTTTGTTATT
1 AGTGTTAATTGTGTTGTTTCGTTATT
57273483 AGTGTTAATTGTGTTGTTTCGTTATT
1 AGTGTTAATTGTGTTGTTTCGTTATT
57273509 A
1 A
57273510 CAAGGAGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.17, C:0.02, G:0.23, T:0.58
Consensus pattern (26 bp):
AGTGTTAATTGTGTTGTTTCGTTATT
Found at i:57274872 original size:12 final size:13
Alignment explanation
Indices: 57274836--57274873 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
57274826 AAATATTTGA
57274836 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
57274849 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
57274863 CTTG-TCTTAAT
1 CTTGTTCTTAAT
57274874 ATTTCAGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:57279848 original size:9 final size:10
Alignment explanation
Indices: 57279836--57279892 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
57279826 TACGTGGGAT
57279836 ATGATAT-AC
1 ATGATATGAC
*
57279845 ATGAT-TGAT
1 ATGATATGAC
57279854 ATGATATGCAC
1 ATGATATG-AC
*
57279865 ATGATATG-T
1 ATGATATGAC
57279874 ATGATATGCAC
1 ATGATATG-AC
57279885 ATGATATG
1 ATGATATG
57279893 TATGAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:57279868 original size:20 final size:20
Alignment explanation
Indices: 57279835--57279909 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
57279825 ATACGTGGGA
57279835 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
57279852 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
57279873 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
57279893 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
57279910 GAATTCATAA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:57279870 original size:11 final size:11
Alignment explanation
Indices: 57279854--57279909 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
57279844 CATGATTGAT
57279854 ATGATATGCAC
1 ATGATATGCAC
*
57279865 ATGATATG--T
1 ATGATATGCAC
57279874 ATGATATGCAC
1 ATGATATGCAC
*
57279885 ATGATATG--T
1 ATGATATGCAC
*
57279894 ATGAAATGCAC
1 ATGATATGCAC
57279905 ATGAT
1 ATGAT
57279910 GAATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:57280039 original size:26 final size:26
Alignment explanation
Indices: 57279959--57280053 Score: 138
Period size: 26 Copynumber: 3.7 Consensus size: 26
57279949 GAGGAAGTGC
* *
57279959 AAAAGGGCTTGTGCCCCAGTTTATTA
1 AAAAGGGCTTATGCCCCAGTTTATTG
57279985 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
57280011 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
57280037 AAAAGGG-TTTTGCCCCA
1 AAAAGGGCTTATGCCCCA
57280054 ATTATTAAAG
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
25 9 0.14
26 55 0.86
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:57284094 original size:46 final size:46
Alignment explanation
Indices: 57284022--57284194 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
57284012 AACCCGCCCC
* *
57284022 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCA
* * * * * * *
57284068 TAAGTGAACTCGGACTCAACTTAATGAGTTCAGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGACG-TTCGCATCCA
* * * *
57284114 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCA
*
57284161 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
57284195 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 22, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 65 0.65
47 31 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCA
Found at i:57284135 original size:93 final size:93
Alignment explanation
Indices: 57284027--57284197 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
57284017 GCCCCTAAGT
* * * *
57284027 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
57284092 TGAGTTCAGATGCCTAGTTACATTTCAC
66 CGAGTTCAGATGCCTAGTTACATTTCAC
*
57284120 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
57284185 CGAGTTCGGATGC
66 CGAGTTCAGATGC
57284198 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:57290749 original size:20 final size:21
Alignment explanation
Indices: 57290714--57290770 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
57290704 TGATACGTGG
57290714 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
57290732 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
57290753 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
57290771 GAATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:57290891 original size:25 final size:26
Alignment explanation
Indices: 57290820--57290891 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
57290810 GAGGAAGTGC
**
57290820 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
57290846 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
57290872 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
57290892 ATTAAAGAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 10 0.23
26 34 0.77
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:57299381 original size:40 final size:40
Alignment explanation
Indices: 57299337--57299514 Score: 284
Period size: 40 Copynumber: 4.5 Consensus size: 40
57299327 CCAACCCAAT
* * * ** *
57299337 TGCCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCACGAA
*
57299377 TGCCTTCGGGACTTAACCCGAAAATAGCAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCACGAA
57299417 TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCACGAA
*
57299457 TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCATGAA
1 TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCACGAA
57299497 TGCCTTCGGGACTTAACC
1 TGCCTTCGGGACTTAACC
57299515 TGGATAAAAT
Statistics
Matches: 129, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 129 1.00
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.18
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCACGAA
Found at i:57305271 original size:40 final size:40
Alignment explanation
Indices: 57305205--57305371 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
57305195 AAATTGAATG
* * *
57305205 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
57305244 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
57305284 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
57305324 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
57305364 ATATCCGG
1 ATATCCGG
57305372 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:57313232 original size:40 final size:40
Alignment explanation
Indices: 57313173--57313314 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
57313163 AAATTGAATG
* * *
57313173 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
57313213 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
57313253 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
57313293 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
57313315 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:57313315 original size:40 final size:39
Alignment explanation
Indices: 57313212--57313340 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
57313202 TGCTGGAAAT
* * *
57313212 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
57313252 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
57313292 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
57313332 TATATCCGG
1 TATATCCGG
57313341 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:57314718 original size:40 final size:40
Alignment explanation
Indices: 57314619--57314720 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 40
57314609 TCGGGGTTTA
* * *
57314619 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAA-GGCCTTCGAGCCAATGTCAT
* * * * *
57314660 AAT-CGAACCTAGTTTCGAAGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGCCTTCGAGCCAATGTCAT
57314699 AATCCGAGCTTGGTCTCGAAGG
1 AATCCGAGCTTGGTCTCGAAGG
57314721 GCTTTTTGAG
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
39 19 0.40
40 26 0.54
41 3 0.06
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
AATCCGAGCTTGGTCTCGAAGGCCTTCGAGCCAATGTCAT
Found at i:57321530 original size:19 final size:20
Alignment explanation
Indices: 57321506--57321544 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
57321496 TCGTTCAATA
*
57321506 GAAAAACTTTGA-AAATTTT
1 GAAAAACTTAGAGAAATTTT
57321525 GAAAAACTTAGAGAAATTTT
1 GAAAAACTTAGAGAAATTTT
57321545 TTTTAAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.49, C:0.05, G:0.13, T:0.33
Consensus pattern (20 bp):
GAAAAACTTAGAGAAATTTT
Done.