Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 197 of 292
Found at i:58874847 original size:2 final size:2
Alignment explanation
Indices: 58874840--58874869 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
58874830 AACATGAATG
*
58874840 TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
58874870 CGTATAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:58875482 original size:4 final size:4
Alignment explanation
Indices: 58875473--58875499 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
58875463 TACTGGTTAA
58875473 TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTT
58875500 ATATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:58878146 original size:17 final size:18
Alignment explanation
Indices: 58878114--58878148 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
58878104 GGAATTTGGG
*
58878114 GAGTTTTGTCTTTTTATT
1 GAGTTTTCTCTTTTTATT
58878132 GAGTTTTCT-TTTTTATT
1 GAGTTTTCTCTTTTTATT
58878149 ATCCTATGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.11, C:0.06, G:0.14, T:0.69
Consensus pattern (18 bp):
GAGTTTTCTCTTTTTATT
Found at i:58886002 original size:22 final size:21
Alignment explanation
Indices: 58885977--58886035 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 21
58885967 CGACTCGTAT
58885977 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACT-TTCAGCTCAATA
* *
58885999 GAGCTTACCATTTTAGCTCATTA
1 GAGCTTA-C-TTTCAGCTCAATA
58886022 GAGCTTACTATTCA
1 GAGCTTACT-TTCA
58886036 TCAGCTCAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.03
22 11 0.35
23 18 0.58
24 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (21 bp):
GAGCTTACTTTCAGCTCAATA
Found at i:58892389 original size:21 final size:21
Alignment explanation
Indices: 58892360--58892402 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
58892350 TTACAAAAGA
* *
58892360 TATGTATTGGATTGAATTGAG
1 TATGAATTGGATTAAATTGAG
*
58892381 TATGAATTGTATTAAATTGAG
1 TATGAATTGGATTAAATTGAG
58892402 T
1 T
58892403 TAAATTCATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.44
Consensus pattern (21 bp):
TATGAATTGGATTAAATTGAG
Found at i:58892805 original size:25 final size:25
Alignment explanation
Indices: 58892746--58892968 Score: 95
Period size: 25 Copynumber: 8.9 Consensus size: 25
58892736 GGGGTCCTGA
* *
58892746 TAATAGGCTCTCACGAGCTT-CCTAT
1 TAAT-GGCTCTCATGAGCTTCCCGAT
* * *
58892771 TATTTAGCTCTCATGAGCATCCCG-T
1 TA-ATGGCTCTCATGAGCTTCCCGAT
* * *
58892796 TAGATGGCTCTGACGAGCTTCTCGAT
1 TA-ATGGCTCTCATGAGCTTCCCGAT
* *
58892822 TAATGGCTCTCTTGAGCTTCCC-TT
1 TAATGGCTCTCATGAGCTTCCCGAT
* * * * *
58892846 TTACGGCT-TATATGAGCTTTCTGA-
1 TAATGGCTCT-CATGAGCTTCCCGAT
* *
58892870 TAATTGGATCTCCA-AAGCTTCCCGAT
1 TAA-TGGCTCT-CATGAGCTTCCCGAT
* *
58892896 AAAAGGCTCTCACATGAGCTTCCCGAT
1 TAATGGCTCT--CATGAGCTTCCCGAT
* *
58892923 TAATGGCTCTC-TGAAGCTACTCGA-
1 TAATGGCTCTCATG-AGCTTCCCGAT
*
58892947 TATTGGCT-TGCATGAGCTTCCC
1 TAATGGCTCT-CATGAGCTTCCC
58892969 TATATTTCGC
Statistics
Matches: 141, Mismatches: 44, Indels: 27
0.67 0.21 0.13
Matches are distributed among these distances:
23 2 0.01
24 33 0.23
25 75 0.53
26 12 0.09
27 19 0.13
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (25 bp):
TAATGGCTCTCATGAGCTTCCCGAT
Found at i:58895041 original size:23 final size:23
Alignment explanation
Indices: 58894997--58895041 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
58894987 ATCAATTCAA
*
58894997 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
58895020 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
58895042 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:58903280 original size:25 final size:25
Alignment explanation
Indices: 58903252--58903418 Score: 76
Period size: 25 Copynumber: 6.6 Consensus size: 25
58903242 TTAGTAATAG
* *
58903252 GCTCTCATGAGCTTCCTGATATTTA
1 GCTCTCATGAGCTTCCCGATATATA
* * * *
58903277 GCTCCCATGAGCATCCCGTTATATG
1 GCTCTCATGAGCTTCCCGATATATA
* * * *
58903302 GCTCTCACGAGCTTCTCAAT-TAATG
1 GCTCTCATGAGCTTCCCGATAT-ATA
* * *
58903327 GCTCTCTTGAGCTTCCCG-TTTATG
1 GCTCTCATGAGCTTCCCGATATATA
* *
58903351 GCTCGT-ATGAGCTTCCCAATA-ATTG
1 GCTC-TCATGAGCTTCCCGATATA-TA
* *
58903376 GCTCTC-CGAAGCTTCCCGATA-AAA
1 GCTCTCATG-AGCTTCCCGATATATA
58903400 GTCTCTCTCATGAGCTTCC
1 G---CTCTCATGAGCTTCC
58903419 TAATTAATGG
Statistics
Matches: 107, Mismatches: 24, Indels: 20
0.71 0.16 0.13
Matches are distributed among these distances:
24 23 0.21
25 71 0.66
27 12 0.11
28 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (25 bp):
GCTCTCATGAGCTTCCCGATATATA
Found at i:58903305 original size:50 final size:49
Alignment explanation
Indices: 58903251--58903370 Score: 122
Period size: 50 Copynumber: 2.4 Consensus size: 49
58903241 CTTAGTAATA
*
58903251 GGCTCTCATGAGCTTCCTGATATT-TAGCTCCCATGAGCATCCCGTTATAT
1 GGCTCTCATGAGCTTCCTCA-ATTATAGCTCCCATGAGCATCCCGTT-TAT
* * * * *
58903301 GGCTCTCACGAGCTT-CTCAATTAATGGCTCTCTTGAGCTTCCCGTTTAT
1 GGCTCTCATGAGCTTCCTCAATT-ATAGCTCCCATGAGCATCCCGTTTAT
58903350 GGCTCGT-ATGAGCTTCC-CAAT
1 GGCTC-TCATGAGCTTCCTCAAT
58903371 AATTGGCTCT
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
48 3 0.05
49 22 0.37
50 34 0.58
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.34
Consensus pattern (49 bp):
GGCTCTCATGAGCTTCCTCAATTATAGCTCCCATGAGCATCCCGTTTAT
Found at i:58903389 original size:49 final size:50
Alignment explanation
Indices: 58903285--58903470 Score: 141
Period size: 49 Copynumber: 3.7 Consensus size: 50
58903275 TAGCTCCCAT
* * *
58903285 GAGCATCCCGTTATATGGCTCTCACGAGCTTCTCAATTAATGGCTCTCTT
1 GAGCTTCCCGTTATATGGCTCTCACGAGCTTCCCAATTAATGGCTCTCTC
*
58903335 GAGCTTCCCGTT-TATGGCTCGT-ATGAGCTTCCCAA-TAATTGGCTCTC-C
1 GAGCTTCCCGTTATATGGCTC-TCACGAGCTTCCCAATTAA-TGGCTCTCTC
* * ** * * * *
58903383 GAAGCTTCCCGATAAAAGTCTCTCTCATGAGCTTCCTAATTAATGGCT-TTTA
1 G-AGCTTCCCG-TTATA-TGGCTCTCACGAGCTTCCCAATTAATGGCTCTCTC
* * * *
58903435 GAGCTACCCGATAT-TGGCTCGCATGAGCTTCCCAAT
1 GAGCTTCCCGTTATATGGCTCTCACGAGCTTCCCAAT
58903471 ATTTGGCTTG
Statistics
Matches: 108, Mismatches: 19, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
48 22 0.20
49 36 0.33
50 14 0.13
51 11 0.10
52 22 0.20
53 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (50 bp):
GAGCTTCCCGTTATATGGCTCTCACGAGCTTCCCAATTAATGGCTCTCTC
Found at i:58903487 original size:25 final size:24
Alignment explanation
Indices: 58903434--58903516 Score: 76
Period size: 25 Copynumber: 3.4 Consensus size: 24
58903424 AATGGCTTTT
* * *
58903434 AGAGCTACCCGATATTGGCTCGCA
1 AGAGCTTCCCAATATTGGCTTGCA
*
58903458 TGAGCTTCCCAATATTTGGCTTGCA
1 AGAGCTTCCCAATA-TTGGCTTGCA
* * *
58903483 AGAGCTTCCCATTACATGGCTTACA
1 AGAGCTTCCCAATA-TTGGCTTGCA
*
58903508 TGAGCTTCC
1 AGAGCTTCC
58903517 TGTTACATGG
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 11 0.23
25 37 0.77
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (24 bp):
AGAGCTTCCCAATATTGGCTTGCA
Found at i:58903489 original size:100 final size:101
Alignment explanation
Indices: 58903303--58903492 Score: 246
Period size: 100 Copynumber: 1.9 Consensus size: 101
58903293 CGTTATATGG
* * *
58903303 CTCTCACGAGCTTCTCAATTAATGGCTCTCTTGAGCTTCCCGTTTATGGCTCGTATGAGCTTCCC
1 CTCTCACGAGCTTCTCAATTAATGGCTCTCTTGAGCTACCCGTATATGGCTCGCATGAGCTTCCC
*
58903368 AATAATTGGCTCTCCGAAGCTTCCCGATAAAAGTCT
66 AATAATTGGCTCTCCAAAGCTTCCCGATAAAAGTCT
*
58903404 CTCTCATGAGCTTC-CTAATTAATGGCT-T-TTAGAGCTACCCG-ATATTGGCTCGCATGAGCTT
1 CTCTCACGAGCTTCTC-AATTAATGGCTCTCTT-GAGCTACCCGTATA-TGGCTCGCATGAGCTT
* *
58903465 CCCAATATTTGGCT-TGCAAGAGCTTCCC
63 CCCAATAATTGGCTCTCCAA-AGCTTCCC
58903493 ATTACATGGC
Statistics
Matches: 78, Mismatches: 7, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
99 7 0.09
100 47 0.60
101 24 0.31
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (101 bp):
CTCTCACGAGCTTCTCAATTAATGGCTCTCTTGAGCTACCCGTATATGGCTCGCATGAGCTTCCC
AATAATTGGCTCTCCAAAGCTTCCCGATAAAAGTCT
Found at i:58903522 original size:25 final size:25
Alignment explanation
Indices: 58903459--58903528 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
58903449 TGGCTCGCAT
* ** *
58903459 GAGCTTCCCAATATTTGGCTTGCAA
1 GAGCTTCCCATTACATGGCTTACAA
*
58903484 GAGCTTCCCATTACATGGCTTACAT
1 GAGCTTCCCATTACATGGCTTACAA
**
58903509 GAGCTTCCTGTTACATGGCT
1 GAGCTTCCCATTACATGGCT
58903529 CGAAACAGCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCATTACATGGCTTACAA
Found at i:58904795 original size:20 final size:19
Alignment explanation
Indices: 58904772--58904825 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
58904762 TAGACTATGA
58904772 ACCACTTCATTTACATACTT
1 ACCA-TTCATTTACATACTT
*
58904792 ACCATTCCATTTACTTACTT
1 ACCATT-CATTTACATACTT
*
58904812 TCCATTCTATTTAC
1 ACCATTC-ATTTAC
58904826 TTAGCATAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 3 0.10
20 27 0.90
ACGTcount: A:0.26, C:0.30, G:0.00, T:0.44
Consensus pattern (19 bp):
ACCATTCATTTACATACTT
Found at i:58904826 original size:20 final size:20
Alignment explanation
Indices: 58904779--58904828 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
58904769 TGAACCACTT
*
58904779 CATTTACATACTTACCATTC
1 CATTTACTTACTTACCATTC
*
58904799 CATTTACTTACTTTCCATTC
1 CATTTACTTACTTACCATTC
*
58904819 TATTTACTTA
1 CATTTACTTA
58904829 GCATAAGCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (20 bp):
CATTTACTTACTTACCATTC
Found at i:58911266 original size:6 final size:7
Alignment explanation
Indices: 58911250--58911274 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
58911240 TTTCTCATAT
58911250 AAAATGA
1 AAAATGA
58911257 AAAATGA
1 AAAATGA
58911264 AAAATGA
1 AAAATGA
58911271 AAAA
1 AAAA
58911275 GAATTAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (7 bp):
AAAATGA
Found at i:58919245 original size:21 final size:22
Alignment explanation
Indices: 58919212--58919252 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
58919202 ACAATTTATG
*
58919212 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
58919233 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
58919253 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:58922749 original size:382 final size:383
Alignment explanation
Indices: 58921322--58923621 Score: 4415
Period size: 383 Copynumber: 6.0 Consensus size: 383
58921312 AATCATTAGT
* *
58921322 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTACTGGTTGTTTATGATGAATTAA
1 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
*
58921387 CATGGAATTGAAGCTTTAACTTTGTTATGTGATTATTTCATCAAGTGATTTTAATAGAAAATGAT
66 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
* * *
58921452 TTTCAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTTTAAATATCGAAG
131 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
58921517 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
196 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
58921582 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
261 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
*
58921647 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATGA
326 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
58921705 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
1 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
*
58921770 CATGGAATTGAAGCTTTAACTTTGTTATGTGATTATTTCATCAAGTGATTTTAATAGAAAATGAT
66 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
*
58921835 TTTCAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
131 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
58921900 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
196 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
58921965 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
261 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
58922030 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
326 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
*
58922088 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGACTGCTGGGTGTTTATGATGAATTAA
1 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
58922153 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
66 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
58922218 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
131 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
*
58922283 GCTGTATAGTAGCCTAAAATAATTGGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
196 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
*
58922348 AAAATAGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
261 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
58922413 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
326 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
*
58922471 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATAAGTGCTGGGTGTTTATGATGAATTAA
1 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
58922536 CATGGAATTGAAG-TTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
66 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
58922600 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
131 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
58922665 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
196 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
*
58922730 AAAATTGATATGAGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
261 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
58922795 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
326 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
*
58922853 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTAATGAGTGCTGGGTGTTTATGATGAATTAA
1 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
58922918 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
66 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
58922983 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
131 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
58923048 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
196 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
*
58923113 AAAATAGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
261 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
58923178 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
326 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
*
58923236 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATAAGTGCTGGGTGTTTATGATGAATTAA
1 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
58923301 CATGGAATTGAAG-TTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
66 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
58923365 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
131 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
*
58923430 GCTGTATAGTATCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
196 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
58923495 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
261 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
*
58923560 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATAAATAA
326 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
58923618 TTTT
1 TTTT
58923622 ATATTATAGA
Statistics
Matches: 1892, Mismatches: 24, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
382 682 0.36
383 1210 0.64
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (383 bp):
TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
Found at i:58922951 original size:765 final size:765
Alignment explanation
Indices: 58921322--58923621 Score: 4438
Period size: 765 Copynumber: 3.0 Consensus size: 765
58921312 AATCATTAGT
* *
58921322 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTACTGGTTGTTTATGATGAATTAA
1 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
*
58921387 CATGGAATTGAAGCTTTAACTTTGTTATGTGATTATTTCATCAAGTGATTTTAATAGAAAATGAT
66 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
* * *
58921452 TTTCAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTTTAAATATCGAAG
131 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
58921517 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
196 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
*
58921582 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
261 AAAATAGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
*
58921647 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATGATTTTGAT
326 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAATTTTGAT
*
58921712 TTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAACATGGAA
391 TTCATGGGTGATTTTGAAAGTTACCATTGATAAGTGCTGGGTGTTTATGATGAATTAACATGGAA
* *
58921777 TTGAAGCTTTAACTTTGTTATGTGATTATTTCATCAAGTGATTTTAATAGAAAATGATTTTCAAA
456 TTGAAG-TTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGATTTTTAAA
58921842 ACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAGGCTGTAT
520 ACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAGGCTGTAT
58921907 AGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGGAAAATTG
585 AGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGGAAAATTG
58921972 ATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAATTGAAGGG
650 ATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAATTGAAGGG
58922037 CATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
715 CATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
*
58922088 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGACTGCTGGGTGTTTATGATGAATTAA
1 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
58922153 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
66 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
58922218 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
131 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
*
58922283 GCTGTATAGTAGCCTAAAATAATTGGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
196 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
58922348 AAAATAGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
261 AAAATAGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
58922413 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAATTTTGAT
326 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAATTTTGAT
58922478 TTCATGGGTGATTTTGAAAGTTACCATTGATAAGTGCTGGGTGTTTATGATGAATTAACATGGAA
391 TTCATGGGTGATTTTGAAAGTTACCATTGATAAGTGCTGGGTGTTTATGATGAATTAACATGGAA
58922543 TTGAAGTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGATTTTTAAAA
456 TTGAAGTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGATTTTTAAAA
58922608 CTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAGGCTGTATA
521 CTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAGGCTGTATA
58922673 GTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGGAAAATTGA
586 GTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGGAAAATTGA
*
58922738 TATGAGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAATTGAAGGGC
651 TATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAATTGAAGGGC
58922803 ATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
716 ATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
*
58922853 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTAATGAGTGCTGGGTGTTTATGATGAATTAA
1 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
58922918 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
66 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
58922983 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
131 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
58923048 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
196 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
58923113 AAAATAGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
261 AAAATAGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
58923178 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAATTTTGAT
326 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAATTTTGAT
58923243 TTCATGGGTGATTTTGAAAGTTACCATTGATAAGTGCTGGGTGTTTATGATGAATTAACATGGAA
391 TTCATGGGTGATTTTGAAAGTTACCATTGATAAGTGCTGGGTGTTTATGATGAATTAACATGGAA
58923308 TTGAAGTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGATTTTTAAAA
456 TTGAAGTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGATTTTTAAAA
58923373 CTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAGGCTGTATA
521 CTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAGGCTGTATA
*
58923438 GTATCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGGAAAATTGA
586 GTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGGAAAATTGA
58923503 TATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAATTGAAGGGC
651 TATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAATTGAAGGGC
*
58923568 ATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATAAATAA
716 ATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
58923618 TTTT
1 TTTT
58923622 ATATTATAGA
Statistics
Matches: 1514, Mismatches: 20, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
765 1064 0.70
766 450 0.30
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (765 bp):
TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
AAAATAGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAATTTTGAT
TTCATGGGTGATTTTGAAAGTTACCATTGATAAGTGCTGGGTGTTTATGATGAATTAACATGGAA
TTGAAGTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGATTTTTAAAA
CTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAGGCTGTATA
GTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGGAAAATTGA
TATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAATTGAAGGGC
ATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
Found at i:58924588 original size:18 final size:18
Alignment explanation
Indices: 58924567--58924604 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
58924557 TGGTTGTGGA
* *
58924567 TATACATATATTTATTAG
1 TATACATATAGTTAGTAG
58924585 TATACATATAGTTAGTAG
1 TATACATATAGTTAGTAG
58924603 TA
1 TA
58924605 GATTTTAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.45
Consensus pattern (18 bp):
TATACATATAGTTAGTAG
Found at i:58927171 original size:23 final size:23
Alignment explanation
Indices: 58927141--58927234 Score: 136
Period size: 23 Copynumber: 4.1 Consensus size: 23
58927131 GGCCTGGTGT
58927141 AAGGGCTTATACCCCAGTTATTA
1 AAGGGCTTATACCCCAGTTATTA
*
58927164 AAGGGCTTATACCCTAGTTATTA
1 AAGGGCTTATACCCCAGTTATTA
*
58927187 AAGGGCTTAT-GCCCAGTTATTAA
1 AAGGGCTTATACCCCAGTTATT-A
* *
58927210 AAGGGCTTTTGCCCCAGTTATTA
1 AAGGGCTTATACCCCAGTTATTA
58927233 AA
1 AA
58927235 AGAGGCTAGG
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
22 9 0.14
23 45 0.70
24 10 0.16
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (23 bp):
AAGGGCTTATACCCCAGTTATTA
Found at i:58927251 original size:25 final size:24
Alignment explanation
Indices: 58927152--58927255 Score: 74
Period size: 23 Copynumber: 4.4 Consensus size: 24
58927142 AGGGCTTATA
**
58927152 CCCCAGTTATT-AAAGGGCTTA-TA
1 CCCCAGTTATTAAAAGGGC-TAGGG
* *
58927175 CCCTAGTTATT-AAAGGGCTTA-TG
1 CCCCAGTTATTAAAAGGGC-TAGGG
***
58927198 -CCCAGTTATTAAAAGGGCTTTTG
1 CCCCAGTTATTAAAAGGGCTAGGG
58927221 CCCCAGTTATTAAAAGAGGCTAGGG
1 CCCCAGTTATTAAAAG-GGCTAGGG
*
58927246 CTCCAGTTAT
1 CCCCAGTTAT
58927256 ATGATAAAGC
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
22 10 0.14
23 30 0.43
24 15 0.22
25 14 0.20
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (24 bp):
CCCCAGTTATTAAAAGGGCTAGGG
Found at i:58927483 original size:31 final size:31
Alignment explanation
Indices: 58927448--58927511 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
58927438 CGTTTACAGT
*
58927448 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
**
58927479 AAAGGCTTCGGCCCAATGTTATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
58927510 AA
1 AA
58927512 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:58935033 original size:25 final size:25
Alignment explanation
Indices: 58935004--58935051 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
58934994 TTATAACATG
* * *
58935004 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
58935029 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
58935052 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:58935135 original size:11 final size:11
Alignment explanation
Indices: 58935099--58935154 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
58935089 CATGGTATGT
58935099 ATGATATGCAC
1 ATGATATGCAC
* *
58935110 ATGACATG--T
1 ATGATATGCAC
58935119 ATGATATGCAC
1 ATGATATGCAC
*
58935130 ATGATATG--T
1 ATGATATGCAC
58935139 ATGATATGCAC
1 ATGATATGCAC
58935150 ATGAT
1 ATGAT
58935155 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:58935154 original size:20 final size:20
Alignment explanation
Indices: 58935088--58935154 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
58935078 ATTTTGATAA
*
58935088 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
58935108 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
58935128 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
58935148 ACATGAT
1 ACATGAT
58935155 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:58935272 original size:24 final size:24
Alignment explanation
Indices: 58935204--58935297 Score: 131
Period size: 23 Copynumber: 4.0 Consensus size: 24
58935194 GAGGAAGTGA
58935204 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
58935228 -AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
58935250 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
58935274 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
58935298 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
22 10 0.16
23 23 0.37
24 19 0.30
25 11 0.17
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:58935527 original size:31 final size:31
Alignment explanation
Indices: 58935491--58935554 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
58935481 CATTTACAGT
* * *
58935491 AAAGGCTTTGGCCTAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
**
58935522 AAAGGCTTCGACCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
58935553 AA
1 AA
58935555 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:58940265 original size:40 final size:40
Alignment explanation
Indices: 58940210--58940354 Score: 161
Period size: 40 Copynumber: 3.6 Consensus size: 40
58940200 CCGGGCTAAG
* * *
58940210 TCCCGAAGGCTTTTGTGCAAGTGACTAAATCCGAGTCAAT
1 TCCCGAAGGCATTTGTGCAAGTTACTAAATCCGAGTTAAT
* * * *
58940250 TCCCGAAGGCATTTGTGCCAGTTACCAAAACC-AGGTTAAG
1 TCCCGAAGGCATTTGTGCAAGTTACTAAATCCGA-GTTAAT
* *
58940290 TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAT
1 TCCCGAAGGCATTTGTGCAAGTTACTAAATCCGAGTTAAT
*
58940330 T-CCGAAGGCAATTGTGCGAA-TTACT
1 TCCCGAAGGCATTTGTGC-AAGTTACT
58940355 GTAACCGGGC
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 21 0.24
40 67 0.76
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (40 bp):
TCCCGAAGGCATTTGTGCAAGTTACTAAATCCGAGTTAAT
Found at i:58940363 original size:39 final size:39
Alignment explanation
Indices: 58940200--58940381 Score: 134
Period size: 40 Copynumber: 4.6 Consensus size: 39
58940190 CGAATGATGT
* ** *
58940200 CCGGGCTAAGTCCCGAAGGCTTTTGTGC-AAGTGACTAAA
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAA-TTACTAAA
* * * * * * *
58940239 TCCGAGTCAATTCCCGAAGGCATTTGTGCCAGTTACCAAAA
1 -CCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTA-CTAAA
* * *
58940280 CCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTACTAAA
* *
58940319 TCCGGGTTAA-TTCCGAAGGCAATTGTGCGAATTACTGTAA
1 -CCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTACT-AAA
* * *
58940359 CCGGGCTATGTCCCGAAGACAAT
1 CCGGGTTAAGTCCCGAAGGCAAT
58940382 CGAGCTAGTC
Statistics
Matches: 114, Mismatches: 23, Indels: 10
0.78 0.16 0.07
Matches are distributed among these distances:
39 34 0.30
40 75 0.66
41 5 0.04
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (39 bp):
CCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTACTAAA
Found at i:58948306 original size:40 final size:40
Alignment explanation
Indices: 58948192--58948370 Score: 193
Period size: 40 Copynumber: 4.5 Consensus size: 40
58948182 TCGAATGATG
* * * *
58948192 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
58948233 TCCGGGTCAATTCCCGAAGGCATTTGTGC-AGTTACCAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAA
58948273 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
58948312 TCCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACTGTAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAA
* *
58948353 -CCGGGCTATGTCCCGAAG
1 TCCGGGTTAAGTCCCGAAG
58948371 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 34 0.29
40 57 0.48
41 27 0.23
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58948331 original size:79 final size:80
Alignment explanation
Indices: 58948194--58948340 Score: 233
Period size: 79 Copynumber: 1.9 Consensus size: 80
58948184 GAATGATGTC
* *
58948194 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
58948259 TGCAGTTACCAAAAT
66 TGCAGTTACCAAAAT
* * * *
58948274 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAATTCCCGAAGGCAATTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
58948338 TGC
66 TGC
58948341 GAATTACTGT
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 36 0.59
80 25 0.41
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
TGCAGTTACCAAAAT
Found at i:58948369 original size:80 final size:80
Alignment explanation
Indices: 58948193--58948370 Score: 232
Period size: 80 Copynumber: 2.2 Consensus size: 80
58948183 CGAATGATGT
* *
58948193 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
*
58948258 GTGCAGTTACCAAAA
66 GTGCAATTACCAAAA
* * * * *
58948273 TCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
***
58948337 GTGCGAATTACTGTAA
66 GTGC-AATTACCAAAA
*
58948353 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
58948371 ACAATCGAGC
Statistics
Matches: 83, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
79 36 0.43
80 47 0.57
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCAATTACCAAAA
Found at i:58956344 original size:38 final size:38
Alignment explanation
Indices: 58956278--58956386 Score: 170
Period size: 38 Copynumber: 2.9 Consensus size: 38
58956268 TAATCCGGAT
58956278 ATTT-TTCCAGCACT-TA-CCTGCGGACTTTAAGTCCAG
1 ATTTATTCCAGCA-TATAGCCTGCGGACTTTAAGTCCAG
* *
58956314 ATTTATTCCAGCATATAGCCTGTGGACTTTAAGTCCGG
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
58956352 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTC
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTC
58956387 AGGATTTCTT
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
36 5 0.07
37 10 0.15
38 52 0.78
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (38 bp):
ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
Found at i:58960901 original size:44 final size:45
Alignment explanation
Indices: 58960806--58960939 Score: 162
Period size: 46 Copynumber: 3.0 Consensus size: 45
58960796 ACAGGACAGA
* *
58960806 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
58960852 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
58960896 ACAGGAATAATTCATGTAAGTCCATGTCAAAGATATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
58960940 CAAGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 36 0.48
45 1 0.01
46 38 0.51
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:58966811 original size:52 final size:52
Alignment explanation
Indices: 58966725--58966832 Score: 191
Period size: 52 Copynumber: 2.1 Consensus size: 52
58966715 ATAGAAGTTC
*
58966725 ACTTCCTC-ATTTGATATTGATTTGAATAAGGTGTTTCAACTTTAGTGCATT
1 ACTTCATCTATTTGATATTGATTTGAATAAGGTGTTTCAACTTTAGTGCATT
*
58966776 TCTTCATCTATTTGATATTGATTTGAATAAGGTGTTTCAACTTTAGTGCATT
1 ACTTCATCTATTTGATATTGATTTGAATAAGGTGTTTCAACTTTAGTGCATT
58966828 ACTTC
1 ACTTC
58966833 TACTAGATGT
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 6 0.11
52 47 0.89
ACGTcount: A:0.25, C:0.14, G:0.15, T:0.46
Consensus pattern (52 bp):
ACTTCATCTATTTGATATTGATTTGAATAAGGTGTTTCAACTTTAGTGCATT
Found at i:58968059 original size:20 final size:20
Alignment explanation
Indices: 58968036--58968082 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
58968026 TTATTTTTAT
58968036 TTTTTTTAATT-TATTGATGC
1 TTTTTTTAATTATATTGAT-C
** *
58968056 TTTTTAGAATTATATTTATC
1 TTTTTTTAATTATATTGATC
58968076 TTTTTTT
1 TTTTTTT
58968083 TTTTCTTTCA
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.21, C:0.04, G:0.06, T:0.68
Consensus pattern (20 bp):
TTTTTTTAATTATATTGATC
Found at i:58968607 original size:36 final size:36
Alignment explanation
Indices: 58968567--58968639 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
58968557 AATAGTTTTC
* *
58968567 TATATTATAGGAAGTAGATGGCGAGTAGGAGTAGTT
1 TATATTATAGGAAGTAGAGGGCGAGTAAGAGTAGTT
* * *
58968603 TATATTTTAGGAAGTAGAGGGTGATTAAGAGTAGTT
1 TATATTATAGGAAGTAGAGGGCGAGTAAGAGTAGTT
58968639 T
1 T
58968640 TCCTATTTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.33, C:0.01, G:0.32, T:0.34
Consensus pattern (36 bp):
TATATTATAGGAAGTAGAGGGCGAGTAAGAGTAGTT
Found at i:58974731 original size:17 final size:17
Alignment explanation
Indices: 58974711--58974744 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
58974701 AAATAGGTTT
58974711 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
*
58974728 TTAATTAAAATTTTTAA
1 TTAATTAAAAATTTTAA
58974745 ACCTAAATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:58976642 original size:7 final size:7
Alignment explanation
Indices: 58976632--58976656 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
58976622 TGGGGCTTAG
58976632 GTGGGTA
1 GTGGGTA
58976639 GTGGGTA
1 GTGGGTA
58976646 GTGGGTA
1 GTGGGTA
58976653 GTGG
1 GTGG
58976657 ACAGTGGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.60, T:0.28
Consensus pattern (7 bp):
GTGGGTA
Found at i:58976662 original size:14 final size:14
Alignment explanation
Indices: 58976632--58976665 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
58976622 TGGGGCTTAG
**
58976632 GTGGGTAGTGGGTA
1 GTGGGTAGTGGACA
58976646 GTGGGTAGTGGACA
1 GTGGGTAGTGGACA
58976660 GTGGGT
1 GTGGGT
58976666 TAATTGTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.03, G:0.56, T:0.26
Consensus pattern (14 bp):
GTGGGTAGTGGACA
Found at i:58983909 original size:40 final size:40
Alignment explanation
Indices: 58983844--58983937 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
58983834 CCAACTCCGT
* * **
58983844 CCAACCCAACACACC--ATGTGGGGATAAAATTGACCCAC
1 CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
* *
58983882 CCATCCCTACACACCAAATATGGGGATAAAATCAACCCAT
1 CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
*
58983922 CCAACCCTATACACCA
1 CCAACCCTACACACCA
58983938 TAGAGTACCG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 13 0.28
40 33 0.72
ACGTcount: A:0.38, C:0.36, G:0.11, T:0.15
Consensus pattern (40 bp):
CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
Found at i:58984386 original size:18 final size:18
Alignment explanation
Indices: 58984348--58984386 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
58984338 GTGTGGTTCA
*
58984348 CCCGTGTAGGCCCACATG
1 CCCGTGTAGGCCCACAGG
58984366 CCCGTGT-GGCCCACACGG
1 CCCGTGTAGGCCCACA-GG
58984384 CCC
1 CCC
58984387 AATTGATCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.13, C:0.46, G:0.28, T:0.13
Consensus pattern (18 bp):
CCCGTGTAGGCCCACAGG
Found at i:58994708 original size:119 final size:119
Alignment explanation
Indices: 58994497--58995096 Score: 900
Period size: 119 Copynumber: 5.0 Consensus size: 119
58994487 AAATAAATTG
** **
58994497 AAGATAGCAGATCTAGA-CTTCAGACATTTATGTTGAAGCAGATCCAAGATGATTTGGTATTCTT
1 AAGATAGCAGATCTA-ACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTT
* *
58994561 GTGTTTACAAGAAACAAATCGAGGACATATCAGATTTGACTCTCAGACGTTCTCA
65 GTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* * * *
58994616 AAGATAGTAGATCTAACCTTCAGATGATTATACTGGAGCAGATCCAAGATGATTTGGTATGCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
* *
58994681 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCCGACGTTCAAAAACA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC----TCA
* *
58994739 AA-ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCTAGGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
* *
58994803 TGTTTACAAGGAACAAATCAAGGACATAGCAGATTTGATTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* *
58994857 AAGATAGTAGACCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
*
58994922 TGTTTAC-AGGAAGCAAATCGAGGACATAGCAGATTTGAATCTCAGACGTTCTCA
66 TGTTTACAAGGAA-CAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* *
58994976 AATATAGCAGATCTAACCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
* * * *
58995041 TATTTACAAGGAACAAATCGAGGACATAGCAAATTTGACTCTTAGATGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
58995095 AA
1 AA
58995097 CAGACTCAAG
Statistics
Matches: 436, Mismatches: 37, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
118 10 0.02
119 313 0.72
120 5 0.01
122 104 0.24
123 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (119 bp):
AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
Found at i:58994924 original size:241 final size:238
Alignment explanation
Indices: 58994500--58995096 Score: 930
Period size: 241 Copynumber: 2.5 Consensus size: 238
58994490 TAAATTGAAG
** *
58994500 ATAGCAGATCTAGA-CTTCAGACATTTATGTTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
1 ATAGCAGATCTA-ACCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
* * *
58994564 TTTACAAGAAACAAATCGAGGACATATCAGATTTGACTCTCAGACGTTCTCAAAGATAGTAGATC
65 TTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAGTAGACC
*
58994629 TAACCTTCAGATGATTATACTGGAGCAGATCCAAGATGATTTGGTATGCTTGTGTTTACAAGGAA
130 TAACCTTCAGATGATTATACTGAAGCAGATCCAAGATGATTTGGTATGCTTGTGTTTAC-AGGAA
* *
58994694 -CAAATCGAGGACATAGCAGATTTGACTCTCCGACGTTCAAAAACAAA-
194 GCAAATCGAGGACATAGCAGATTTGAATCTCAGACGTTC----ACAAAT
* * *
58994741 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCTAGGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
* *
58994806 TTACAAGGAACAAATCAAGGACATAGCAGATTTGATTCTCAGACGTTCTCAAAGATAGTAGACCT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAGTAGACCT
* *
58994871 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAGGAAGC
131 AACCTTCAGATGATTATACTGAAGCAGATCCAAGATGATTTGGTATGCTTGTGTTTACAGGAAGC
*
58994936 AAATCGAGGACATAGCAGATTTGAATCTCAGACGTTCTCAAAT
196 AAATCGAGGACATAGCAGATTTGAATCTCAGACGTTCACAAAT
*
58994979 ATAGCAGATCTAACCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTGTAT
1 ATAGCAGATCTAACCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
* * *
58995044 TTACAAGGAACAAATCGAGGACATAGCAAATTTGACTCTTAGATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
58995097 CAGACTCAAG
Statistics
Matches: 327, Mismatches: 26, Indels: 9
0.90 0.07 0.02
Matches are distributed among these distances:
237 4 0.01
238 109 0.33
240 6 0.02
241 208 0.64
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (238 bp):
ATAGCAGATCTAACCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAGTAGACCT
AACCTTCAGATGATTATACTGAAGCAGATCCAAGATGATTTGGTATGCTTGTGTTTACAGGAAGC
AAATCGAGGACATAGCAGATTTGAATCTCAGACGTTCACAAAT
Found at i:58995124 original size:83 final size:83
Alignment explanation
Indices: 58995020--58995289 Score: 342
Period size: 83 Copynumber: 3.2 Consensus size: 83
58995010 GAAGCAGATC
* * ** * * *
58995020 CAAGATGATTTGGTATTCTTGTATTTACAAGGAACAAATCGAGGACATAGCAAATTTGACTCTTA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAAATATGACTCTCA
*
58995085 GATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
58995103 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGGACATTGCAGATATAACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAAATATGACTCTCA
58995168 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * * * *
58995186 CAAGATGGTTTAAGTACCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAAATATGACTCTC
1 CAAGATGATTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAAATATGACTCTC
* *
58995251 AAATGTTTTCAGACAGACT
65 AAATGTTCTCAAACAGACT
*
58995270 CAAGATGATTTGACATCCTT
1 CAAGATGATTTGGCATCCTT
58995290 AAAAATCGAA
Statistics
Matches: 159, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
83 87 0.55
84 72 0.45
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAAATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:58995249 original size:84 final size:83
Alignment explanation
Indices: 58995044--58995276 Score: 331
Period size: 84 Copynumber: 2.8 Consensus size: 83
58995034 ATTCTTGTAT
* * * *
58995044 TTACAAGGAACAAATCGAGGACATAGCAAATTTGACTCTTAGATGTTCTCAAACAGACTCAAGAT
1 TTACAAGGAACAAATCGAGGACATTGCAAATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
* *
58995109 GGTTTGGCATCCTTGTGC
66 GGTTTAGCACCCTTGTGC
* * *
58995127 TTACAAGGAACAAATCAAGGACATTGCAGATATAACTCTCAAATGTTCTCAAACAGACTCAAGAT
1 TTACAAGGAACAAATCGAGGACATTGCAAATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
*
58995192 GGTTTAAGTACCCTTGTGC
66 GGTTT-AGCACCCTTGTGC
* * * *
58995211 TTACAAGGAACAAGTCGAGGACCTTGCAAATATGACTCTCAAATGTTTTCAGACAGACTCAAGAT
1 TTACAAGGAACAAATCGAGGACATTGCAAATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
58995276 G
66 G
58995277 ATTTGACATC
Statistics
Matches: 132, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
83 63 0.48
84 69 0.52
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (83 bp):
TTACAAGGAACAAATCGAGGACATTGCAAATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
GGTTTAGCACCCTTGTGC
Found at i:58999866 original size:17 final size:18
Alignment explanation
Indices: 58999844--58999884 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
58999834 TATATTATAT
*
58999844 ATTATAA-AATTATTTTG
1 ATTATAAGAATTATTTTA
*
58999861 ATTATAAGTATTATTTTA
1 ATTATAAGAATTATTTTA
58999879 ATTATA
1 ATTATA
58999885 TATTATTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (18 bp):
ATTATAAGAATTATTTTA
Found at i:58999873 original size:18 final size:19
Alignment explanation
Indices: 58999852--58999894 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
58999842 ATATTATAAA
*
58999852 ATTATTTTGATTATA-AGT
1 ATTATTTTAATTATATAGT
*
58999870 ATTATTTTAATTATATATT
1 ATTATTTTAATTATATAGT
58999889 ATTATT
1 ATTATT
58999895 ACTTATTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTATTTTAATTATATAGT
Found at i:58999890 original size:16 final size:16
Alignment explanation
Indices: 58999852--58999930 Score: 59
Period size: 16 Copynumber: 4.6 Consensus size: 16
58999842 ATATTATAAA
*
58999852 ATTATTTTGATTATAAGT
1 ATTATTTTAATTAT-A-T
58999870 ATTATTTTAATTATAT
1 ATTATTTTAATTATAT
*
58999886 ATTATTATTACTTATTATGT
1 ATTATT-TTA---ATTATAT
** *
58999906 ATTATTTTTCTTAAAT
1 ATTATTTTAATTATAT
58999922 ATTATTTTA
1 ATTATTTTA
58999931 CATCTCTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
16 19 0.38
17 4 0.08
18 13 0.26
19 2 0.04
20 12 0.24
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.61
Consensus pattern (16 bp):
ATTATTTTAATTATAT
Found at i:59000005 original size:12 final size:12
Alignment explanation
Indices: 58999961--59000012 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
58999951 ATATTTTCAC
58999961 ATATATTATATTT
1 ATATATTAT-TTT
*
58999974 AT-TAATTA-TAT
1 ATAT-ATTATTTT
58999985 ATATATTATTTT
1 ATATATTATTTT
*
58999997 ATATGTTATTTT
1 ATATATTATTTT
59000009 ATAT
1 ATAT
59000013 TATATCTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
11 8 0.24
12 19 0.58
13 6 0.18
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (12 bp):
ATATATTATTTT
Found at i:59000025 original size:12 final size:12
Alignment explanation
Indices: 58999964--59000025 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
58999954 TTTTCACATA
58999964 TATTATATTTAT
1 TATTATATTTAT
*
58999976 TAATTATATATA-
1 T-ATTATATTTAT
58999988 TATTAT-TTTAT
1 TATTATATTTAT
*
58999999 ATGTTAT-TTTA-
1 -TATTATATTTAT
*
59000010 TATTATATCTAT
1 TATTATATTTAT
59000022 TATT
1 TATT
59000026 TTTCTTATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
10 8 0.20
11 8 0.20
12 15 0.38
13 9 0.22
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (12 bp):
TATTATATTTAT
Found at i:59000113 original size:22 final size:23
Alignment explanation
Indices: 59000048--59000107 Score: 61
Period size: 25 Copynumber: 2.6 Consensus size: 23
59000038 TTATATTACA
* *
59000048 TTTTA-TTATATAATCTTTATTATG
1 TTTTATTTATATATTATTTA-T-TG
*
59000072 TTTTATTTTTATATTATTTATTG
1 TTTTATTTATATATTATTTATTG
59000095 TTTT-TTTATATAT
1 TTTTATTTATATAT
59000108 GTTTTAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
22 8 0.26
23 6 0.19
24 6 0.19
25 11 0.35
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (23 bp):
TTTTATTTATATATTATTTATTG
Found at i:59009622 original size:14 final size:14
Alignment explanation
Indices: 59009603--59009631 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
59009593 TAAATGTCTC
59009603 TTCTTCTTTTTCTT
1 TTCTTCTTTTTCTT
59009617 TTCTTCTTTTTCTT
1 TTCTTCTTTTTCTT
59009631 T
1 T
59009632 CTGATAACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (14 bp):
TTCTTCTTTTTCTT
Found at i:59010319 original size:63 final size:63
Alignment explanation
Indices: 59010138--59010305 Score: 237
Period size: 63 Copynumber: 2.7 Consensus size: 63
59010128 ATGTATCAGA
* * * ** *
59010138 CCGTGTAACTCACTATTTTGGAATTAGAATCACACAAGCTAGAGACACGGGCATGTGTCTAAG
1 CCGTATAACTCACTATTTTGGAATTAGAGTCATACGGGCTAGAGACACGGGCATGTGTCCAAG
* * *
59010201 CCGTGTAACTCACTATTTTGGAATTAAAGTCATACGGGCTAGAGACATGGGCATGTGTCCAAG
1 CCGTATAACTCACTATTTTGGAATTAGAGTCATACGGGCTAGAGACACGGGCATGTGTCCAAG
* *
59010264 CCGTATGACTCACTATTTTGGAATTAGAGTCATATGGGCTAG
1 CCGTATAACTCACTATTTTGGAATTAGAGTCATACGGGCTAG
59010306 CCACCGGGCC
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 94 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (63 bp):
CCGTATAACTCACTATTTTGGAATTAGAGTCATACGGGCTAGAGACACGGGCATGTGTCCAAG
Found at i:59013136 original size:46 final size:46
Alignment explanation
Indices: 59012973--59013145 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
59012963 GGTTGAGCAT
*
59012973 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
59013017 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
59013062 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
59013110 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59013146 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:59016109 original size:15 final size:15
Alignment explanation
Indices: 59016089--59016157 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
59016079 GTATCTTGGG
59016089 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
59016104 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
59016119 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
59016134 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
59016149 TTTCTTTAT
1 TTTCTTTAT
59016158 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:59016158 original size:30 final size:30
Alignment explanation
Indices: 59016080--59016167 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
59016070 CATAGTATCG
* * * *
59016080 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
59016110 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
59016140 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
59016168 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:59018570 original size:46 final size:46
Alignment explanation
Indices: 59018520--59018695 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
59018510 ATGGTTGGCA
59018520 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
59018566 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
59018611 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
59018659 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59018696 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:59018675 original size:93 final size:93
Alignment explanation
Indices: 59018516--59018687 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
59018506 TAGGATGGTT
* *
59018516 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
59018581 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
59018609 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
59018674 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
59018688 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:59022736 original size:26 final size:26
Alignment explanation
Indices: 59022700--59022759 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
59022690 TCTTCTGTTC
59022700 TGTTATACGATCGTTATGAAAATCTA
1 TGTTATACGATCGTTATGAAAATCTA
* *
59022726 TGTTATACGATCGTTGTGAAAATCTC
1 TGTTATACGATCGTTATGAAAATCTA
*
59022752 TGTGATAC
1 TGTTATAC
59022760 TTTGATTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.38
Consensus pattern (26 bp):
TGTTATACGATCGTTATGAAAATCTA
Found at i:59025627 original size:40 final size:40
Alignment explanation
Indices: 59025527--59025681 Score: 224
Period size: 40 Copynumber: 3.9 Consensus size: 40
59025517 TTATACTCTT
59025527 TGTCTGGTGTGTTTCAGTTGGATTAGCTCCTATGAGCTTC
1 TGTCTGGTGTGTTTCAGTTGGATTAGCTCCTATGAGCTTC
* *
59025567 -CTCTAGTGTGTTTCAGTTGGATTAGCTCCTAT-AGGCTTC
1 TGTCTGGTGTGTTTCAGTTGGATTAGCTCCTATGA-GCTTC
* *
59025606 TGTCTGGTGTGTTTCGGTTGGATTAGCTCTTATGAGCTTC
1 TGTCTGGTGTGTTTCAGTTGGATTAGCTCCTATGAGCTTC
* * *
59025646 TATCTGGTGTGTTTCAGTTGGACTAGCTCTTATGAG
1 TGTCTGGTGTGTTTCAGTTGGATTAGCTCCTATGAG
59025682 AATCTGGTGT
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 35 0.34
40 66 0.64
41 1 0.01
ACGTcount: A:0.14, C:0.17, G:0.27, T:0.43
Consensus pattern (40 bp):
TGTCTGGTGTGTTTCAGTTGGATTAGCTCCTATGAGCTTC
Found at i:59026224 original size:5 final size:5
Alignment explanation
Indices: 59026216--59026249 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
59026206 AAATAAAAAG
59026216 ATTTT ATTTT ATTTTT ATTTT ATTTT ATTTT ATT
1 ATTTT ATTTT A-TTTT ATTTT ATTTT ATTTT ATT
59026250 AATTTAGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:59026237 original size:16 final size:16
Alignment explanation
Indices: 59026216--59026246 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
59026206 AAATAAAAAG
59026216 ATTTTATTTTATTTTT
1 ATTTTATTTTATTTTT
59026232 ATTTTATTTTATTTT
1 ATTTTATTTTATTTT
59026247 ATTAATTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
ATTTTATTTTATTTTT
Found at i:59031194 original size:12 final size:12
Alignment explanation
Indices: 59031179--59031203 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
59031169 ATTGAAAGAC
59031179 AAATCATTGAAT
1 AAATCATTGAAT
59031191 AAATCATTGAAT
1 AAATCATTGAAT
59031203 A
1 A
59031204 GGGGCCGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (12 bp):
AAATCATTGAAT
Found at i:59037511 original size:20 final size:21
Alignment explanation
Indices: 59037486--59037533 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
59037476 ATTTCTATTT
*
59037486 GTATAAACTA-TAGTTTATCC
1 GTATAAACTAGTAGTTCATCC
59037506 GTATAAA-TAGTAGTTCATCC
1 GTATAAACTAGTAGTTCATCC
*
59037526 ATATAAAC
1 GTATAAAC
59037534 ACATATCTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (21 bp):
GTATAAACTAGTAGTTCATCC
Found at i:59037760 original size:24 final size:23
Alignment explanation
Indices: 59037701--59037760 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
59037691 TGAGCTGATG
*
59037701 AACAGTAAGCTCTATTGAACTGA
1 AACAGTAAGCTCTAATGAACTGA
**
59037724 AATGGTAAGCTCTAAT-AAGCTGAA
1 AACAGTAAGCTCTAATGAA-CTG-A
59037748 AACAGTAAGCTCT
1 AACAGTAAGCTCT
59037761 TACGAGCTGA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 2 0.07
23 16 0.53
24 12 0.40
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (23 bp):
AACAGTAAGCTCTAATGAACTGA
Found at i:59038033 original size:23 final size:23
Alignment explanation
Indices: 59037989--59038034 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
59037979 GGCCCATTAT
* *
59037989 AAACCAAAAATAATAAATATAAA
1 AAACCAAAAATAAAAAAAATAAA
59038012 AAACC-AAAATAAAAAACAATAAA
1 AAACCAAAAATAAAAAA-AATAAA
59038035 TGGCCCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.76, C:0.11, G:0.00, T:0.13
Consensus pattern (23 bp):
AAACCAAAAATAAAAAAAATAAA
Found at i:59049281 original size:49 final size:49
Alignment explanation
Indices: 59049136--59049444 Score: 493
Period size: 49 Copynumber: 6.4 Consensus size: 49
59049126 TACATATATG
* * * *
59049136 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA--TATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
59049183 TGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTGTA--TATA
1 TGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
59049230 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
59049279 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
59049328 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
59049377 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
59049426 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
59049445 TAATGTAAAA
Statistics
Matches: 252, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
46 1 0.00
47 83 0.33
49 168 0.67
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:59049595 original size:37 final size:37
Alignment explanation
Indices: 59049545--59049666 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
59049535 TGGAAATGTT
*
59049545 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
59049582 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
59049619 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
59049656 CCGGGTAAGAC
1 CCGGGTAAGAC
59049667 TTCGTAATAA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:59051785 original size:29 final size:29
Alignment explanation
Indices: 59051753--59051883 Score: 237
Period size: 29 Copynumber: 4.6 Consensus size: 29
59051743 CGTTAACCGA
*
59051753 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
59051782 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
59051811 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
59051840 GCACTATGTGTGCG-GATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
*
59051868 GCACTGTGTGTGCGAG
1 GCACTATGTGTGCGAG
59051884 TTTTTCAACA
Statistics
Matches: 99, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
28 27 0.27
29 72 0.73
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATTGAG
Found at i:59051792 original size:58 final size:58
Alignment explanation
Indices: 59051721--59051883 Score: 197
Period size: 58 Copynumber: 2.8 Consensus size: 58
59051711 CGAATGATTA
* *
59051721 GAGGCACTGTGTGTGC-AAATTCCGTTAACCGA-GCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAAA-TCAG-TAACCGAGGCACTATGTGTGCGAGATCAGTAATC
* ** *
59051779 GAGGCACTATGTGTGCGAGATCAGTAATTGAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATC
* ** *
59051837 GAGGCACTATGTGTGCG-GATCAGTAATTGAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAG
59051884 TTTTTCAACA
Statistics
Matches: 96, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
57 34 0.35
58 60 0.62
59 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (58 bp):
GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:59055574 original size:49 final size:49
Alignment explanation
Indices: 59055429--59055736 Score: 484
Period size: 49 Copynumber: 6.4 Consensus size: 49
59055419 TACATATATG
* * * *
59055429 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA--TATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
59055476 TGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTGTA--TATA
1 TGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
59055523 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
59055572 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
59055621 TGTGATAAGGCCTAAT-GCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
59055669 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
59055718 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
59055737 TAATGTAAAA
Statistics
Matches: 250, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
46 1 0.00
47 83 0.33
48 48 0.19
49 118 0.47
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:59055677 original size:97 final size:97
Alignment explanation
Indices: 59055429--59055736 Score: 491
Period size: 97 Copynumber: 3.2 Consensus size: 97
59055419 TACATATATG
* * * *
59055429 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA--TATGTGTGATAAGGCCGT-A
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCC-TAA
* *
59055491 TGGCCAATGTGATGAATGTGAAAGTGTA-TATA
65 TGGCCGATGTGGTGAATGTGAAAGTGTATTATA
59055523 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
59055588 GGCCGATGTGGTGAATGTGAAAGTGTATGTATA
66 GGCCGATGTGGTGAATGTGAAAGTGTAT-TATA
*
59055621 TGTGATAAGGCCTAAT-GCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
59055685 GGCCGATGTGGTGAATGTGAAAGTGTATATATA
66 GGCCGATGTGGTGAATGTGAAAGTGTAT-TATA
59055718 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
59055737 TAATGTAAAA
Statistics
Matches: 200, Mismatches: 8, Indels: 8
0.93 0.04 0.04
Matches are distributed among these distances:
94 40 0.20
95 1 0.00
96 42 0.21
97 95 0.47
98 22 0.11
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (97 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGGTGAATGTGAAAGTGTATTATA
Found at i:59055791 original size:146 final size:144
Alignment explanation
Indices: 59055422--59055792 Score: 437
Period size: 146 Copynumber: 2.6 Consensus size: 144
59055412 TATGATATAC
* * * * * * *
59055422 ATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCAT--ATGTGTGATAAG
1 ATATATATGTGATAAGGCCTAATGGCCAATGTGA-AAATATGAAAGTGTATGCATATGTGGTAAG
*
59055485 GCCGTATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
65 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
59055550 TGAATGTGAAAGTGT
130 TGAATGTGAAAGTGT
* * ** * * *
59055565 ATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
1 ATATATATGTGATAAGGCCTAATGGCCAATGT-GAAAATATGAAAGTGTATGCATATGTGGTAAG
* * *
59055630 GCCTAAT-GCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGT
65 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGT
*
59055694 GGTGAATGTGAAAGTGT
128 GATGAATGTGAAAGTGT
* **
59055711 ATATATATGTGATAAGGCCTAATGGCTAATGT-AAAATAT-ATGTGTGATATGCATATGTGGTAA
1 ATATATATGTGATAAGGCCTAATGGCCAATGTGAAAATATGA-AAGTG-TATGCATATGTGGTAA
* *
59055774 AGCCGAATGGCTAATGTGA
64 GGCCGAATGGCCAATGTGA
59055793 ATGTTGTAAC
Statistics
Matches: 193, Mismatches: 27, Indels: 13
0.83 0.12 0.06
Matches are distributed among these distances:
143 44 0.23
144 32 0.17
145 36 0.19
146 81 0.42
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (144 bp):
ATATATATGTGATAAGGCCTAATGGCCAATGTGAAAATATGAAAGTGTATGCATATGTGGTAAGG
CCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGT
Found at i:59055888 original size:37 final size:37
Alignment explanation
Indices: 59055838--59055959 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
59055828 GGAAAATGTT
*
59055838 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
59055875 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
59055912 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
59055949 CCGGGTAAGAC
1 CCGGGTAAGAC
59055960 TTCGTAATAA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:59058362 original size:40 final size:40
Alignment explanation
Indices: 59058307--59058469 Score: 168
Period size: 40 Copynumber: 4.0 Consensus size: 40
59058297 AATGATACCT
* * *
59058307 GGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCC
1 GGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCC
*
59058347 GGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATATCC
1 GGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATATCC
* * ** *
59058387 GGGCTAAAGACCCGAAGGCAATTGTGCAAGTCACCAAATCC
1 GGGCT-AAGACCCGAAGGCAATTGTGCTAGTGATTATATCC
* * * *
59058428 GGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATGTCC
1 GGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCC
59058468 GG
1 GG
59058470 TTGAATCCCG
Statistics
Matches: 100, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
39 2 0.02
40 65 0.65
41 30 0.30
42 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCC
Found at i:59061307 original size:14 final size:15
Alignment explanation
Indices: 59061283--59061311 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
59061273 GTATTTAGTT
59061283 TTTATTATTATTTTA
1 TTTATTATTATTTTA
59061298 TTTATT-TTATTTTA
1 TTTATTATTATTTTA
59061312 ATATTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTATTATTATTTTA
Found at i:59061423 original size:11 final size:11
Alignment explanation
Indices: 59061399--59061476 Score: 59
Period size: 11 Copynumber: 7.7 Consensus size: 11
59061389 TGTTATATAC
59061399 GTATATATT-T
1 GTATATATTAT
59061409 -TATATATTAT
1 GTATATATTAT
59061419 GTATATATTA-
1 GTATATATTAT
59061429 -T-T-T-TTAT
1 GTATATATTAT
59061436 -TATATATTAT
1 GTATATATTAT
59061446 GTATATA-TAT
1 GTATATATTAT
59061456 CGTAT-TATTCAT
1 -GTATATATT-AT
59061468 GTATTATAT
1 GTA-TATAT
59061477 CATATATGCA
Statistics
Matches: 56, Mismatches: 0, Indels: 21
0.73 0.00 0.27
Matches are distributed among these distances:
6 3 0.05
7 2 0.04
8 2 0.04
9 10 0.18
10 10 0.18
11 23 0.41
12 3 0.05
13 3 0.05
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (11 bp):
GTATATATTAT
Found at i:59075821 original size:28 final size:28
Alignment explanation
Indices: 59075781--59075872 Score: 168
Period size: 28 Copynumber: 3.3 Consensus size: 28
59075771 ATGTACTAGA
59075781 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
59075809 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
59075837 ATACCCCTATGTATGCAAAATGACC-TT
1 ATACCCCTATGTATGCAAAATTACCATT
59075864 ATACCCCTA
1 ATACCCCTA
59075873 GGGTTAATTT
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
27 11 0.17
28 52 0.83
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:59076036 original size:27 final size:27
Alignment explanation
Indices: 59075978--59076067 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
59075968 AGGAAGCGTC
59075978 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
59076006 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
59076033 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
59076062 CTGGTG
1 CTGGTG
59076068 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:59076086 original size:55 final size:56
Alignment explanation
Indices: 59075978--59076092 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
59075968 AGGAAGCGTC
* *
59075978 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
59076033 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
59076089 CTGG
1 CTGG
59076093 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:59077173 original size:11 final size:10
Alignment explanation
Indices: 59077145--59077178 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
59077135 AGCCTGTAAG
59077145 TATTCTGAAT
1 TATTCTGAAT
*
59077155 TTTTCTGAAT
1 TATTCTGAAT
59077165 ATATTCTGAAT
1 -TATTCTGAAT
59077176 TAT
1 TAT
59077179 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:59083418 original size:8 final size:8
Alignment explanation
Indices: 59083405--59083436 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
59083395 CTAGATCGGC
59083405 AAAAGCCG
1 AAAAGCCG
59083413 AAAAGCCG
1 AAAAGCCG
*
59083421 AAATGCCG
1 AAAAGCCG
59083429 AAAAGCCG
1 AAAAGCCG
59083437 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:59083723 original size:28 final size:28
Alignment explanation
Indices: 59083683--59083774 Score: 168
Period size: 28 Copynumber: 3.3 Consensus size: 28
59083673 ATGTACTAGA
59083683 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
59083711 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
59083739 ATACCCCTATGTATGCAAAATGACC-TT
1 ATACCCCTATGTATGCAAAATTACCATT
59083766 ATACCCCTA
1 ATACCCCTA
59083775 GGGTTAATTT
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
27 11 0.17
28 52 0.83
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:59083938 original size:27 final size:27
Alignment explanation
Indices: 59083880--59083969 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
59083870 AGGAAGCGTC
59083880 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
59083908 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
59083935 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
59083964 CTGGTG
1 CTGGTG
59083970 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:59083988 original size:55 final size:56
Alignment explanation
Indices: 59083880--59083994 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
59083870 AGGAAGCGTC
* *
59083880 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
59083935 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
59083991 CTGG
1 CTGG
59083995 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:59085176 original size:142 final size:144
Alignment explanation
Indices: 59084972--59085247 Score: 457
Period size: 145 Copynumber: 1.9 Consensus size: 144
59084962 TAGTTCATGT
59084972 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTAATTTCTACTTTTCC-AAAAT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTAATTTCTACTTTTCCAAAAAT
* * * *
59085036 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAAGTAATTTCAATTTCTGTTTT
66 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAAGTAATTTCAATTTCTGTCTT
59085101 TTTCAATTTATATG
131 TTTCAATTTATATG
* *
59085115 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTCAAAAAA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTTTAATTTCTACTTTTC-CAAAA
*
59085179 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTTCTGTC
64 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAAGTAATTTCAATTTCTGTC
59085244 TTTT
129 TTTT
59085248 CAAAAATCAA
Statistics
Matches: 123, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
142 34 0.28
143 22 0.18
145 67 0.54
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (144 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTAATTTCTACTTTTCCAAAAAT
CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAAGTAATTTCAATTTCTGTCTT
TTTCAATTTATATG
Found at i:59085480 original size:87 final size:88
Alignment explanation
Indices: 59085245--59085493 Score: 276
Period size: 86 Copynumber: 2.9 Consensus size: 88
59085235 ATTTCTGTCT
* * *
59085245 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCATATGCTGAGGTA--TTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGTGTTGAGGTATTTTT
** * * *
59085308 CCAGTTTCTGTTCAATTTATATT
66 AAAATTTCTGTTCAAATTATATG
* * * * *
59085331 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGTATCGAGGTATTTTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGTGTTGAGGTATTTTT
*
59085396 AAAATTTACTTTTCAAATTA-A-G
66 AAAATTT-CTGTTCAAATTATATG
* * * *
59085418 TTTCAAAAATCAACTCGTATTGCGAGAAGTGAGTTGAGTCTTGGCTCATGTGTTGAGCTA-TTTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGTGTTGAGGTATTTTT
*
59085482 -CAATTTCTGTTC
66 AAAATTTCTGTTC
59085494 TAATATCTGT
Statistics
Matches: 135, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
84 5 0.04
85 5 0.04
86 56 0.41
87 51 0.38
88 8 0.06
89 10 0.07
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.38
Consensus pattern (88 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGTGTTGAGGTATTTTT
AAAATTTCTGTTCAAATTATATG
Found at i:59086647 original size:10 final size:10
Alignment explanation
Indices: 59086632--59086656 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
59086622 AAATATATAT
59086632 AAAAAAGAAA
1 AAAAAAGAAA
59086642 AAAAAAGAAA
1 AAAAAAGAAA
59086652 AAAAA
1 AAAAA
59086657 CTACCTGAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:59087378 original size:22 final size:22
Alignment explanation
Indices: 59087346--59087396 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
59087336 TACATATATG
*
59087346 TATTTGTATTTAGTTTT-TTTTAT
1 TATTT-TATTTA-TTTTATTTTAA
59087369 TATTTTATTTATTTTATTTTAA
1 TATTTTATTTATTTTATTTTAA
59087391 TATTTT
1 TATTTT
59087397 TAATGCTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 4 0.15
22 17 0.65
23 5 0.19
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (22 bp):
TATTTTATTTATTTTATTTTAA
Found at i:59087492 original size:9 final size:10
Alignment explanation
Indices: 59087478--59087533 Score: 64
Period size: 9 Copynumber: 5.7 Consensus size: 10
59087468 GTTATATACG
59087478 TATATATT-T
1 TATATATTAT
59087487 TATATATTAT
1 TATATATTAT
59087497 GTATATATTAT
1 -TATATATTAT
*
59087508 T-TTTATTA-
1 TATATATTAT
59087516 TATATATTAT
1 TATATATTAT
59087526 GTATATAT
1 -TATATAT
59087534 ATCGTATTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
8 1 0.03
9 20 0.50
10 2 0.05
11 17 0.43
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.61
Consensus pattern (10 bp):
TATATATTAT
Found at i:59087501 original size:11 final size:11
Alignment explanation
Indices: 59087477--59087556 Score: 68
Period size: 11 Copynumber: 7.7 Consensus size: 11
59087467 TGTTATATAC
59087477 GTATATATT-T
1 GTATATATTAT
59087487 -TATATATTAT
1 GTATATATTAT
59087497 GTATATATTAT
1 GTATATATTAT
*
59087508 -T-TTTATTA-
1 GTATATATTAT
59087516 -TATATATTAT
1 GTATATATTAT
59087526 GTATATA-TAT
1 GTATATATTAT
59087536 CGTAT-TATTCAT
1 -GTATATATT-AT
59087548 GTATTATAT
1 GTA-TATAT
59087557 CATATATGCA
Statistics
Matches: 58, Mismatches: 2, Indels: 17
0.75 0.03 0.22
Matches are distributed among these distances:
8 1 0.02
9 20 0.34
10 7 0.12
11 24 0.41
12 3 0.05
13 3 0.05
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (11 bp):
GTATATATTAT
Found at i:59087507 original size:18 final size:17
Alignment explanation
Indices: 59087480--59087556 Score: 59
Period size: 18 Copynumber: 4.4 Consensus size: 17
59087470 TATATACGTA
*
59087480 TATATTTTATATATTATG
1 TATATATTAT-TATTATG
*
59087498 TATATATTATTTTTAT-
1 TATATATTATTATTATG
*
59087514 TATATA-TATTATGTATA
1 TATATATTATTAT-TATG
**
59087531 TATATCGTATTATTCATG
1 TATATATTATTATT-ATG
59087549 TATTATAT
1 TA-TATAT
59087557 CATATATGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
15 5 0.11
16 9 0.19
17 11 0.23
18 19 0.40
19 3 0.06
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (17 bp):
TATATATTATTATTATG
Found at i:59087514 original size:20 final size:20
Alignment explanation
Indices: 59087477--59087533 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
59087467 TGTTATATAC
59087477 GTATATATT-TTATATATTA
1 GTATATATTATTATATATTA
*
59087496 TGTATATATTATT-TTTATTA
1 -GTATATATTATTATATATTA
59087516 -TATATATTATGTATATAT
1 GTATATATTAT-TATATAT
59087534 ATCGTATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 10 0.31
19 1 0.03
20 19 0.59
21 2 0.06
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (20 bp):
GTATATATTATTATATATTA
Found at i:59093231 original size:43 final size:45
Alignment explanation
Indices: 59093183--59093284 Score: 136
Period size: 43 Copynumber: 2.3 Consensus size: 45
59093173 GCCACCCAGC
* ** *
59093183 CTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATT-AAG-T
1 CTTATCTCTCTAAGGTAGCAAGAAAGCAGACTAAAGATTGAAGAT
*
59093226 CTTATCTTTCTAAGGTAGCAAGAAAGCAGACTAAAGATTGAAGAT
1 CTTATCTCTCTAAGGTAGCAAGAAAGCAGACTAAAGATTGAAGAT
*
59093271 CTTATCTCCCTAAG
1 CTTATCTCTCTAAG
59093285 CAGTAGTGGA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 34 0.68
44 3 0.06
45 13 0.26
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (45 bp):
CTTATCTCTCTAAGGTAGCAAGAAAGCAGACTAAAGATTGAAGAT
Found at i:59093415 original size:43 final size:45
Alignment explanation
Indices: 59093360--59093455 Score: 135
Period size: 43 Copynumber: 2.2 Consensus size: 45
59093350 GCCACCCAGC
**
59093360 CTTATCTCTCTGAGGTAGCAAGAGAA-CAGGTTGAAGATTG-AG-T
1 CTTATCTCTCTGAGGTAGCAAGA-AAGCAGACTGAAGATTGAAGAT
*
59093403 CTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGAT
1 CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGAT
59093448 CTTATCTC
1 CTTATCTC
59093456 CCTAAGCAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
42 2 0.04
43 34 0.74
44 2 0.04
45 8 0.17
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (45 bp):
CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGAT
Found at i:59093452 original size:177 final size:177
Alignment explanation
Indices: 59093156--59093982 Score: 1100
Period size: 177 Copynumber: 4.7 Consensus size: 177
59093146 ACTAAATTGA
*
59093156 CAATGGAGCAGATTTAAGCCACCCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAT
1 CAATGGAGCAGATTTAAGCCACCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAT
* * *
59093221 TAAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGC
66 TGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGC
* *
59093286 AGTAGTGGAGTAGATCGCAGATGGTGAATCTTATCTCCATGTATCAG
131 AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCAG
* *
59093333 CAATGGATCAGATTTAAGCCACCCAGCCTTATCTCTCTGAGGTAGCAAGAGAACAGGTTGAAGAT
1 CAATGGAGCAGATTTAAGCCACCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAT
59093398 TGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGC
66 TGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGC
* * *
59093463 AGTAGTAGAGCAGATCGTAGATGGTGAATCTTATCTCCATGTATCGG
131 AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCAG
* * * * *
59093510 GAATGGAGCAGATTTAAGCCACCCAGTCTTATCTCTTTGAGGTAGCAAAAGAGTAGGTTGAAGAT
1 CAATGGAGCAGATTTAAGCCACCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAT
* *
59093575 TGAGTCTTATCTTTCTGAGGTAGCAAGGAAGC--A-TGAAGATTAAAGATCTTATCTCCCTAAGC
66 TGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGC
* * * *
59093637 AGTAGAGGAGCAGATCAAAAATGGCGAATCTTATCTCCATGTATCAG
131 AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCAG
* * * **
59093684 CAATGGAGCAGATTTTAGCCA-CTAGTCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGAT
1 CAATGGAGCAGATTTAAGCCACCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAT
*
59093748 TGTAGTCTTATC-TTCTTGAGGTAGCAAGGAAA-CAGACTGAAGATTGAAGATC-TATCTCTCTA
66 TG-AGTCTTATCTTTC-TGAGGTAGCAA-GAAAGCAGACTGAAGATTGAAGATCTTATCTCCCTA
* * * *
59093810 AGCAGTAGTGGAGCGGATCGAATATGGTGAATTTTATCTCTATGTATCAG
128 AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCAG
* * * * * * * **
59093860 CAATGAAGCAGATGTTAA--CA-CTAGCCTTATCTTTTTGAGGAAGCAAGAGAACAGATTGGTGA
1 CAATGGAGCAGAT-TTAAGCCACCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * * * * *
59093922 TTGTAGTCTTATATTCCTGAGGTAGCAAGGAAGCAAACT-AATGATTGTAGATTTTATCTCC
65 TTG-AGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAA-GATTGAAGATCTTATCTCC
59093983 TTGAGAAAAC
Statistics
Matches: 579, Mismatches: 60, Indels: 23
0.87 0.09 0.03
Matches are distributed among these distances:
173 42 0.07
174 113 0.20
175 78 0.13
176 73 0.13
177 273 0.47
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (177 bp):
CAATGGAGCAGATTTAAGCCACCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAT
TGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCAG
Found at i:59093541 original size:89 final size:89
Alignment explanation
Indices: 59093270--59093544 Score: 208
Period size: 89 Copynumber: 3.1 Consensus size: 89
59093260 AGATTGAAGA
* * * *
59093270 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCAGATGGTGAATCTTATCTCCATGTATCAGCA
1 TCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCAGGA
*
59093335 ATGGATCAGATTTAAGCCACCCAG
66 ATGGAGCAGATTTAAGCCACCCAG
* * * * * * * * *
59093359 CCTTATCTCTCTGAG--GTAGCAAGAGAACAGGTTGAAGAT--TGAGTCTTATCTTTCTGAGGTA
1 TCTTATCTCCCTAAGCAGTAG-TAGAG--CAGATCGAAGATGGTGAATCTTATC--TC-CATGTA
* * * * ***
59093420 GCAAGAA---AGCAGACTGAAG--ATTGAAG
60 TCAGGAATGGAGCAGATTTAAGCCA-CCCAG
* *
59093446 ATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGTAGATGGTGAATCTTATCTCCATGTATCGGG
1 -TCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCAGG
59093511 AATGGAGCAGATTTAAGCCACCCAG
65 AATGGAGCAGATTTAAGCCACCCAG
59093536 TCTTATCTC
1 TCTTATCTC
59093545 TTTGAGGTAG
Statistics
Matches: 130, Mismatches: 39, Indels: 34
0.64 0.19 0.17
Matches are distributed among these distances:
86 9 0.07
87 17 0.13
88 34 0.26
89 45 0.35
90 16 0.12
91 9 0.07
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (89 bp):
TCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCAGGA
ATGGAGCAGATTTAAGCCACCCAG
Found at i:59093793 original size:44 final size:44
Alignment explanation
Indices: 59093706--59093808 Score: 104
Period size: 44 Copynumber: 2.3 Consensus size: 44
59093696 TTTTAGCCAC
* ** **
59093706 TAGTCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTG
1 TAGTCTTATCTCTCTGAGGTAGCAAGAGAACAGACTGAAGATTG
59093750 TAGTCTTATCT-TCTTGAGGTAGCAAG-GAAACAGACTGAAGATTG
1 TAGTCTTATCTCTC-TGAGGTAGCAAGAG-AACAGACTGAAGATTG
*
59093794 AAGATC-TATCTCTCT
1 TAG-TCTTATCTCTCT
59093809 AAGCAGTAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
43 3 0.06
44 42 0.86
45 4 0.08
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (44 bp):
TAGTCTTATCTCTCTGAGGTAGCAAGAGAACAGACTGAAGATTG
Found at i:59094588 original size:9 final size:9
Alignment explanation
Indices: 59094574--59094601 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
59094564 GGTTCCCACG
59094574 CACGGCCTC
1 CACGGCCTC
59094583 CACGGCCTC
1 CACGGCCTC
59094592 CACGGCCTC
1 CACGGCCTC
59094601 C
1 C
59094602 TCCTCCGTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.57, G:0.21, T:0.11
Consensus pattern (9 bp):
CACGGCCTC
Found at i:59096017 original size:31 final size:31
Alignment explanation
Indices: 59095956--59096017 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
59095946 CATAGTTTTT
* *
59095956 TTTTTAAAATTTATTTATATACATAATTATG
1 TTTTTAAAATCTATTTACATACATAATTATG
*
59095987 TTTTTAAAATCTA-TTACATATATAACTTATG
1 TTTTTAAAATCTATTTACATACATAA-TTATG
59096018 ATAAAATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 10 0.37
31 17 0.63
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (31 bp):
TTTTTAAAATCTATTTACATACATAATTATG
Found at i:59106121 original size:32 final size:29
Alignment explanation
Indices: 59106083--59106146 Score: 74
Period size: 32 Copynumber: 2.1 Consensus size: 29
59106073 CCTAAACTCA
*
59106083 TTTTAAACATATCCATATTATATATTTTAATT
1 TTTTAAAAATATCCATA-T-TAT-TTTTAATT
**
59106115 TTTTAAAAATATTTATATTATTTTTAATT
1 TTTTAAAAATATCCATATTATTTTTAATT
59106144 TTT
1 TTT
59106147 AATTTAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 11 0.38
30 3 0.10
31 1 0.03
32 14 0.48
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTTAAAAATATCCATATTATTTTTAATT
Found at i:59106170 original size:25 final size:25
Alignment explanation
Indices: 59106141--59106190 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
59106131 ATTATTTTTA
*
59106141 ATTTTTAAT-TTAAAATTTATATAT
1 ATTTTTTATATTAAAATTTATATAT
*
59106165 ATTTTTTGTATTAAAATTTATATAT
1 ATTTTTTATATTAAAATTTATATAT
59106190 A
1 A
59106191 GGTAATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATTTTTTATATTAAAATTTATATAT
Found at i:59118362 original size:13 final size:13
Alignment explanation
Indices: 59118346--59118379 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
59118336 TAATAAATAA
59118346 TAAAATATCTTAT
1 TAAAATATCTTAT
*
59118359 TAAAACATCTTAT
1 TAAAATATCTTAT
59118372 TAAAATAT
1 TAAAATAT
59118380 TAATAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (13 bp):
TAAAATATCTTAT
Found at i:59120292 original size:23 final size:23
Alignment explanation
Indices: 59120266--59120312 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
59120256 AAATTGTAAT
*
59120266 ATATATTTATTATTAATATATTA
1 ATATATTTATTAATAATATATTA
*
59120289 ATATATTTTTTAATAATATATTA
1 ATATATTTATTAATAATATATTA
59120312 A
1 A
59120313 GAATGTAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
ATATATTTATTAATAATATATTA
Found at i:59120569 original size:6 final size:6
Alignment explanation
Indices: 59120558--59120597 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
59120548 TATTTATTTA
59120558 TTTTCT TTTTCT TTTTCT TCTTT-T TGTTTCT TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT T-TTTCT T-TTTCT TTTTCT TTT
59120598 GGTTTTTTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTCT
Found at i:59122902 original size:21 final size:21
Alignment explanation
Indices: 59122878--59122920 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
59122868 GGGGTAAAAA
59122878 GGTAATTTTACCAAACTATGT
1 GGTAATTTTACCAAACTATGT
59122899 GGTAATTTTACCAAACTATGT
1 GGTAATTTTACCAAACTATGT
59122920 G
1 G
59122921 TTATGGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (21 bp):
GGTAATTTTACCAAACTATGT
Found at i:59124841 original size:18 final size:18
Alignment explanation
Indices: 59124818--59124859 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
59124808 CATGTCCCAA
59124818 GCCACAGGGGCGTGTGAG
1 GCCACAGGGGCGTGTGAG
59124836 GCCACAGGGGCGTGTGAG
1 GCCACAGGGGCGTGTGAG
*
59124854 ACCACA
1 GCCACA
59124860 CGGCCTACCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.26, G:0.43, T:0.10
Consensus pattern (18 bp):
GCCACAGGGGCGTGTGAG
Found at i:59128615 original size:29 final size:29
Alignment explanation
Indices: 59128568--59128653 Score: 79
Period size: 30 Copynumber: 2.9 Consensus size: 29
59128558 TTCTGTTTTT
*
59128568 ATTATATTTCTATTCCTATTTATATATTAAA
1 ATTATATTTCTATTACTA-TTAT-TATTAAA
**
59128599 ATTAT-TTTC-ATTACTATTATTATTATT
1 ATTATATTTCTATTACTATTATTATTAAA
*
59128626 ATTATTATTAT-TATTATTATTATTATTA
1 ATTA-TATT-TCTATTACTATTATTATTA
59128654 TTTTCACTCT
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
27 9 0.19
28 5 0.11
29 8 0.17
30 20 0.43
31 5 0.11
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (29 bp):
ATTATATTTCTATTACTATTATTATTAAA
Found at i:59128621 original size:3 final size:3
Alignment explanation
Indices: 59128599--59128655 Score: 89
Period size: 3 Copynumber: 19.0 Consensus size: 3
59128589 ATATATTAAA
*
59128599 ATT ATT -TT CATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
59128644 ATT ATT ATT ATT
1 ATT ATT ATT ATT
59128656 TTCACTCTTG
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
2 2 0.04
3 46 0.92
4 2 0.04
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:59133028 original size:86 final size:86
Alignment explanation
Indices: 59132755--59133028 Score: 250
Period size: 86 Copynumber: 3.1 Consensus size: 86
59132745 GCTACCTCAG
59132755 GAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCTGGTGATAAAA
1 GAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCTGGTGATAAAA
* * *
59132820 TCTACTCCATTGCTGATACAT
66 TCTGCTCCATTACTAATACAT
* * ** * * * * ***
59132841 GAAGATAAGATTCATCATCTGCGAAGAT-CTACTC-TGCTGCAACTCAGAGAAATAAGATCTTCA
1 GAAGATAAGACTCAT--TCTTC-AACCTGCT-CTCTTGCT--ACCTCAGAGAGATGAG-GCTGGT
* ** * *
59132904 AATCTTAGTCTGCTTCC-TTACTACAT-CAG
59 GAT-AAAATCTGC-TCCATTACTA-ATACAT
59132933 GAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCTGGTGATAAAA
1 GAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCTGGTGATAAAA
*
59132998 TCTGCTCCATTACCAATACAT
66 TCTGCTCCATTACTAATACAT
59133019 GAAGATAAGA
1 GAAGATAAGA
59133029 TTCACCATCT
Statistics
Matches: 138, Mismatches: 36, Indels: 28
0.68 0.18 0.14
Matches are distributed among these distances:
85 5 0.04
86 37 0.27
87 4 0.03
88 23 0.17
89 12 0.09
90 23 0.17
91 4 0.03
92 25 0.18
93 5 0.04
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.28
Consensus pattern (86 bp):
GAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCTGGTGATAAAA
TCTGCTCCATTACTAATACAT
Found at i:59133172 original size:164 final size:164
Alignment explanation
Indices: 59132898--59133719 Score: 1437
Period size: 164 Copynumber: 5.0 Consensus size: 164
59132888 AGAAATAAGA
* * * **
59132898 TCTTCAAATCTTAGTCTGCTTCCTTACTACATCAGGAAGATAAGACTCATTCTTCAACCTGCTCT
1 TCTTCAAATCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCT
* *
59132963 CTTGCTACCTCAGAGAGATGAGGCTGGTGATAAAATCTGCTCCATTACCAATACATGAAGATAAG
66 CTTGCTACCTTAGAGAGATGAGGCTGGTGATAAAATCTGCTCCATTGCCAATACATGAAGATAAG
*
59133028 ATTCACCATCTGTGAAGATCTGCTCTGCTGCAAC
131 ATTCACCATCTGCGAAGATCTGCTCTGCTGCAAC
*
59133062 TCTTCAAATCTCAGTCTGCTTCCTTTCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCT
1 TCTTCAAATCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCT
* *
59133127 CTTGCTACTTTAGAGAGATGAGGCTGGTGATAAAATCTACTCCATTGCCAATACATGAAGATAAG
66 CTTGCTACCTTAGAGAGATGAGGCTGGTGATAAAATCTGCTCCATTGCCAATACATGAAGATAAG
* * *
59133192 ATTCACCATCTGTGAATATCTGATCTGCTGCAAC
131 ATTCACCATCTGCGAAGATCTGCTCTGCTGCAAC
*
59133226 TCTTCAAATCTCAGTCTGCTTCCTTTCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCT
1 TCTTCAAATCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCT
* *
59133291 CTTGCTACCTTAGAAAGATGAGGCTGGTGATAAAATCTGCTCTATTGCCAATACATGAAGATAAG
66 CTTGCTACCTTAGAGAGATGAGGCTGGTGATAAAATCTGCTCCATTGCCAATACATGAAGATAAG
59133356 ATTCACCATCTGCGAAGATCTGCTCTGCTGCAAC
131 ATTCACCATCTGCGAAGATCTGCTCTGCTGCAAC
*
59133390 TCTTCAAATCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTACTCT
1 TCTTCAAATCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCT
*
59133455 CTTGCTACCTTAGAGAGATGAAGCTGGTGATAAAATCTGCTCCATTGCCAATACATGAAGATAAG
66 CTTGCTACCTTAGAGAGATGAGGCTGGTGATAAAATCTGCTCCATTGCCAATACATGAAGATAAG
*
59133520 ATTCACCATCTGCGAAGATCTGCTCTGCTGTAAC
131 ATTCACCATCTGCGAAGATCTGCTCTGCTGCAAC
59133554 TCTTCAAATCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCT
1 TCTTCAAATCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCT
* * *
59133619 CTTGCTACCTCAGAGAGATGAGGCTGGTGATAAAATCTGCTCTATTGCCAATACATGAAGATGAG
66 CTTGCTACCTTAGAGAGATGAGGCTGGTGATAAAATCTGCTCCATTGCCAATACATGAAGATAAG
59133684 ATTCACCATCTGCGAAGATCTGCTCTGCTGCAAC
131 ATTCACCATCTGCGAAGATCTGCTCTGCTGCAAC
59133718 TC
1 TC
59133720 AGAGAAATAA
Statistics
Matches: 628, Mismatches: 30, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
164 628 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (164 bp):
TCTTCAAATCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCT
CTTGCTACCTTAGAGAGATGAGGCTGGTGATAAAATCTGCTCCATTGCCAATACATGAAGATAAG
ATTCACCATCTGCGAAGATCTGCTCTGCTGCAAC
Found at i:59133668 original size:492 final size:494
Alignment explanation
Indices: 59132554--59133719 Score: 1595
Period size: 492 Copynumber: 2.3 Consensus size: 494
59132544 TCTTTAGTCT
*** * * *
59132554 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCCATCTTTAACCCGCTCTCTTGCCACCT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCTCTTGCTACCT
* * * ** * * *
59132619 CAGAGAAATAAGGCTAGTGGCAAAATCTACTCCATTGCCGATACATGTAGATAGGATTCACCATT
66 CAGAGAGATGAGGCTGGTGATAAAATCTACTCCATTGCCAATACATGAAGATAAGATTCACCA-T
* * *
59132684 CTCGATCTG-CTCCA-CTGCAATCT-CAGTGAAATAAGATCTTCAAAACTCAATCTACTTCCTTG
130 CT-G---TGAAT--ATCTG--ATCTGC--TG---CAA-CTCTTCAAAACTCAATCTACTTCCTTG
*
59132746 CTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCTG
181 CTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAAAGATGAGGCTG
** *
59132811 GTGATAAAATCTACTCCATTGCTGATACATGAAGATAAGATTCATCATCTGCGAAGATCTACTCT
246 GTGATAAAATCTACTCCATTGCCAATACATGAAGATAAGATTCACCATCTGCGAAGATCTACTCT
*
59132876 GCTGCAACTCAGAGAAATAAGATCTTCAAATCTTAGTCTGCTTCCTTACTACATCAGGAAGATAA
311 GCTGCAAC-C-----------ATCTTCAAATCTCAGTCTGCTTCCTTACTACATCAGGAAGATAA
* *
59132941 GACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATGAGGCTGGTGATAAAATCTGCTCC
364 GACTCATTCTTCAACCTACTCTCTTGCTACCTCAGAGAGATGAAGCTGGTGATAAAATCTGCTCC
*
59133006 ATTACCAATACATGAAGATAAGATTCACCATCTGTGAAGATCTGCTCTGCTGCAACTCTTCAAAT
429 ATTACCAATACATGAAGATAAGATTCACCATCTGCGAAGATCTGCTCTGCTGCAACTCTTCAAAT
59133071 C
494 C
* *
59133072 TCAGTCTGCTTCCTTTCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCTCTTGCTACTT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCTCTTGCTACCT
*
59133137 TAGAGAGATGAGGCTGGTGATAAAATCTACTCCATTGCCAATACATGAAGATAAGATTCACCATC
66 CAGAGAGATGAGGCTGGTGATAAAATCTACTCCATTGCCAATACATGAAGATAAGATTCACCATC
* * * *
59133202 TGTGAATATCTGATCTGCTGCAACTCTTCAAATCTCAGTCTGCTTCCTTTCTACCTCAGGAAGAT
131 TGTGAATATCTGATCTGCTGCAACTCTTCAAAACTCAATCTACTTCCTTGCTACCTCAGGAAGAT
** * *
59133267 AAGACTTGTTCTTCAACCTGCTCTCTTGCTACCTTAGAAAGATGAGGCTGGTGATAAAATCTGCT
196 AAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAAAGATGAGGCTGGTGATAAAATCTACT
* *
59133332 CTATTGCCAATACATGAAGATAAGATTCACCATCTGCGAAGATCTGCTCTGCTGCAA-C-TCTTC
261 CCATTGCCAATACATGAAGATAAGATTCACCATCTGCGAAGATCTACTCTGCTGCAACCATCTTC
* * **
59133395 AAATCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTACTCTCTTGC
326 AAATCTCAGTCTGCTTCCTTACTACATCAGGAAGATAAGACTCATTCTTCAACCTACTCTCTTGC
* *
59133460 TACCTTAGAGAGATGAAGCTGGTGATAAAATCTGCTCCATTGCCAATACATGAAGATAAGATTCA
391 TACCTCAGAGAGATGAAGCTGGTGATAAAATCTGCTCCATTACCAATACATGAAGATAAGATTCA
*
59133525 CCATCTGCGAAGATCTGCTCTGCTGTAACTCTTCAAATC
456 CCATCTGCGAAGATCTGCTCTGCTGCAACTCTTCAAATC
59133564 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCTCTTGCTACCT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCTCTTGCTACCT
* * *
59133629 CAGAGAGATGAGGCTGGTGATAAAATCTGCTCTATTGCCAATACATGAAGATGAGATTCACCATC
66 CAGAGAGATGAGGCTGGTGATAAAATCTACTCCATTGCCAATACATGAAGATAAGATTCACCATC
* * *
59133694 TGCGAAGATCTGCTCTGCTGCAACTC
131 TGTGAATATCTGATCTGCTGCAACTC
59133720 AGAGAAATAA
Statistics
Matches: 591, Mismatches: 54, Indels: 32
0.87 0.08 0.05
Matches are distributed among these distances:
492 310 0.52
504 1 0.00
506 149 0.25
507 2 0.00
510 2 0.00
511 4 0.01
512 2 0.00
513 5 0.01
514 1 0.00
516 1 0.00
517 3 0.01
518 111 0.19
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (494 bp):
TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTTCTTCAACCTGCTCTCTTGCTACCT
CAGAGAGATGAGGCTGGTGATAAAATCTACTCCATTGCCAATACATGAAGATAAGATTCACCATC
TGTGAATATCTGATCTGCTGCAACTCTTCAAAACTCAATCTACTTCCTTGCTACCTCAGGAAGAT
AAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAAAGATGAGGCTGGTGATAAAATCTACT
CCATTGCCAATACATGAAGATAAGATTCACCATCTGCGAAGATCTACTCTGCTGCAACCATCTTC
AAATCTCAGTCTGCTTCCTTACTACATCAGGAAGATAAGACTCATTCTTCAACCTACTCTCTTGC
TACCTCAGAGAGATGAAGCTGGTGATAAAATCTGCTCCATTACCAATACATGAAGATAAGATTCA
CCATCTGCGAAGATCTGCTCTGCTGCAACTCTTCAAATC
Found at i:59134057 original size:64 final size:64
Alignment explanation
Indices: 59133956--59134147 Score: 303
Period size: 64 Copynumber: 3.0 Consensus size: 64
59133946 TTCATGTATC
* * ** *
59133956 ATGCTTATGCCAAATAATTAGAATATTATGATCAAAATGAATCAAATGCTCCCAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* *
59134020 ATGCTTATGTCAAATAATTCGGATGCTATGATCAAAATGAATCAAATGCTCCTGACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* *
59134084 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATAAATCAAATGCTCCTAACTGGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
59134148 TTATGAATGA
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 117 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:59135260 original size:22 final size:22
Alignment explanation
Indices: 59135235--59135281 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
59135225 CTTTTTTCAA
59135235 TTTCTTTGATTGATTCTTTCTT
1 TTTCTTTGATTGATTCTTTCTT
** *
59135257 TTTCTTTTTTTGATTTTTTCTT
1 TTTCTTTGATTGATTCTTTCTT
59135279 TTT
1 TTT
59135282 ACTTCTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.06, C:0.11, G:0.06, T:0.77
Consensus pattern (22 bp):
TTTCTTTGATTGATTCTTTCTT
Found at i:59140790 original size:2 final size:2
Alignment explanation
Indices: 59140783--59140821 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
59140773 AACTAGCAAA
59140783 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
59140822 ATCAATAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:59144171 original size:15 final size:15
Alignment explanation
Indices: 59144138--59144177 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
59144128 TTATATCAAC
*
59144138 TAAATA-TTAAATTA
1 TAAATATTTTAATTA
*
59144152 CAAATATTTTAATTA
1 TAAATATTTTAATTA
59144167 TAAATATTTTA
1 TAAATATTTTA
59144178 TCATTTCATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
TAAATATTTTAATTA
Found at i:59148810 original size:18 final size:18
Alignment explanation
Indices: 59148787--59148829 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
59148777 GAATAGGTTT
* *
59148787 TTAATTAAACAAATTTAA
1 TTAATTAAAAAAATTAAA
59148805 TTAATTAAAAAAATTAAA
1 TTAATTAAAAAAATTAAA
59148823 TTAATTA
1 TTAATTA
59148830 CACCTTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAATTAAAAAAATTAAA
Found at i:59151700 original size:4 final size:4
Alignment explanation
Indices: 59151686--59151718 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
59151676 AATCGAAAGC
59151686 TTTA CTTTA TTTA TTTA TTTA TTTA TTT- TTTA T
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
59151719 GTTGGCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
3 3 0.11
4 20 0.74
5 4 0.15
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Done.