Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 20 of 292
Found at i:5316265 original size:27 final size:27
Alignment explanation
Indices: 5316211--5316269 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
5316201 TAATAATATA
*
5316211 AATAATAATATATATATGAGAAATAAT
1 AATAATAATATAAATATGAGAAATAAT
5316238 AATAATAATATAAATAAT-AGCAAA-AAT
1 AATAATAATATAAAT-ATGAG-AAATAAT
5316265 AATAA
1 AATAA
5316270 AATTAACTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (27 bp):
AATAATAATATAAATATGAGAAATAAT
Found at i:5317139 original size:2 final size:2
Alignment explanation
Indices: 5317132--5317165 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
5317122 CAAACTTTAT
5317132 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5317166 CTTGATGTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5319806 original size:30 final size:31
Alignment explanation
Indices: 5319742--5319809 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
5319732 AATCAAAGTT
* *
5319742 AAAGTTTCATATATACATTTGAACCACCATC
1 AAAGTTTCATATATACAATTGAACCACAATC
* * *
5319773 AAAGTTTCATGTCTATAATTGAACCA-AATC
1 AAAGTTTCATATATACAATTGAACCACAATC
5319803 AAAGTTT
1 AAAGTTT
5319810 GTGTGTCAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 10 0.31
31 22 0.69
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.34
Consensus pattern (31 bp):
AAAGTTTCATATATACAATTGAACCACAATC
Found at i:5321064 original size:19 final size:20
Alignment explanation
Indices: 5321024--5321066 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
5321014 TATAAAAAAT
*
5321024 TTTAAATTGTATAGATATTA
1 TTTAAATTATATAGATATTA
5321044 TTTAAATTATATAGA-ATTA
1 TTTAAATTATATAGATATTA
5321063 TTTA
1 TTTA
5321067 TACAATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (20 bp):
TTTAAATTATATAGATATTA
Found at i:5321487 original size:41 final size:39
Alignment explanation
Indices: 5321442--5321531 Score: 126
Period size: 39 Copynumber: 2.3 Consensus size: 39
5321432 TAAAAAGTAT
*
5321442 TTATATTAAAAAACACTACCATAAATATAATAAATATTTTA
1 TTATATTAAAAAACAC-A-AATAAATATAATAAATATTTTA
* *
5321483 TTATATTAATAACCACAAATAAATATAATAAATATTTTA
1 TTATATTAAAAAACACAAATAAATATAATAAATATTTTA
*
5321522 TTTTATTAAA
1 TTATATTAAA
5321532 TATAATTTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
39 29 0.66
40 1 0.02
41 14 0.32
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (39 bp):
TTATATTAAAAAACACAAATAAATATAATAAATATTTTA
Found at i:5330734 original size:7 final size:6
Alignment explanation
Indices: 5330711--5330774 Score: 62
Period size: 6 Copynumber: 10.3 Consensus size: 6
5330701 CAACCCAATC
5330711 TTTATT TTTATT TTTATT TATTATT TTT-TT CTTT-TT TTTATT ATTTATT
1 TTTATT TTTATT TTTATT T-TTATT TTTATT -TTTATT TTTATT -TTTATT
5330760 ATTT-TAT TTTATT TT
1 -TTTAT-T TTTATT TT
5330775 AGTTAAATAT
Statistics
Matches: 52, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
5 5 0.10
6 29 0.56
7 18 0.35
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:5330745 original size:20 final size:19
Alignment explanation
Indices: 5330712--5330768 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
5330702 AACCCAATCT
5330712 TTATTTTTATTTTTATTTA
1 TTATTTTTATTTTTATTTA
* *
5330731 TTATTTTTTTCTTTTTTTTA
1 TTATTTTTAT-TTTTATTTA
5330751 TTATTTATTA-TTTTATTT
1 TTATTT-TTATTTTTATTT
5330769 TATTTTAGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 16 0.50
20 14 0.44
21 2 0.06
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.81
Consensus pattern (19 bp):
TTATTTTTATTTTTATTTA
Found at i:5330769 original size:20 final size:18
Alignment explanation
Indices: 5330712--5330772 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 18
5330702 AACCCAATCT
5330712 TTATTTTTATTTTTATTTA
1 TTATTTTTATTTTT-TTTA
*
5330731 TTATTTTTTTCTTTTTTTTA
1 TTA--TTTTTATTTTTTTTA
5330751 TTATTTATTATTTTATTTTA
1 TTATTT-TTATTTT-TTTTA
5330771 TT
1 TT
5330773 TTAGTTAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
18 3 0.08
19 9 0.25
20 14 0.39
21 10 0.28
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (18 bp):
TTATTTTTATTTTTTTTA
Found at i:5331876 original size:115 final size:115
Alignment explanation
Indices: 5331674--5331883 Score: 375
Period size: 115 Copynumber: 1.8 Consensus size: 115
5331664 TGTTTTCCAT
* * *
5331674 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACTGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
5331739 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCTAGCCA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCTAGCCA
**
5331789 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
5331854 CTACTTCGCGTCAAAAGGTTGTGTGACGTG
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTG
5331884 TGGGTAAAAC
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
115 90 1.00
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (115 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCTAGCCA
Found at i:5334082 original size:19 final size:21
Alignment explanation
Indices: 5334060--5334099 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
5334050 AACCGAAACC
5334060 AAAA-AAAAATAATAAAACAAA
1 AAAATAAAAATAATAAAAC-AA
5334081 AAAATAAAAATAATAAAAC
1 AAAATAAAAATAATAAAAC
5334100 CAAGTGTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.12
Consensus pattern (21 bp):
AAAATAAAAATAATAAAACAA
Found at i:5336808 original size:26 final size:25
Alignment explanation
Indices: 5336772--5336853 Score: 114
Period size: 26 Copynumber: 3.2 Consensus size: 25
5336762 TGATACAAAT
5336772 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTC-A
5336798 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
5336824 T--TAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
5336848 TGATAA
1 TGATAA
5336854 GAATTTCATG
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
24 20 0.39
25 2 0.04
26 28 0.55
27 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:5338518 original size:27 final size:27
Alignment explanation
Indices: 5338480--5338616 Score: 168
Period size: 27 Copynumber: 5.1 Consensus size: 27
5338470 GAAGCGTTCA
*
5338480 GGTGGCTATGCCACAAATATCTGATCT
1 GGTGGCTCTGCCACAAATATCTGATCT
5338507 GGTGGCTCTGCCACAAATATCTGATCT
1 GGTGGCTCTGCCACAAATATCTGATCT
* * *
5338534 GGTGGCTCTGCCACATATATTTGTTCT
1 GGTGGCTCTGCCACAAATATCTGATCT
* *
5338561 GGTGGCTCTGCCACGATTATCTGTATCT
1 GGTGGCTCTGCCACAAATATCTG-ATCT
* * * *
5338589 GGTGACTCTGTCAC-ATTATCTGTTCT
1 GGTGGCTCTGCCACAAATATCTGATCT
5338615 GG
1 GG
5338617 CAGCCATGCT
Statistics
Matches: 97, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
26 5 0.05
27 77 0.79
28 15 0.15
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
GGTGGCTCTGCCACAAATATCTGATCT
Found at i:5338562 original size:54 final size:55
Alignment explanation
Indices: 5338480--5338616 Score: 188
Period size: 54 Copynumber: 2.5 Consensus size: 55
5338470 GAAGCGTTCA
* * *
5338480 GGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-ATCT
1 GGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTATCT
* * *
5338534 GGTGGCTCTGCCACATATATTTGTTCTGGTGGCTCTGCCACGATTATCTGTATCT
1 GGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTATCT
* *
5338589 GGTGACTCTGTCACAT-TATCTGTTCTGG
1 GGTGGCTCTGCCACATATATCTGTTCTGG
5338617 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 55 0.75
55 18 0.25
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (55 bp):
GGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTATCT
Found at i:5339749 original size:41 final size:40
Alignment explanation
Indices: 5339666--5339967 Score: 426
Period size: 41 Copynumber: 7.4 Consensus size: 40
5339656 CGTTCTAAAA
* * * *
5339666 AAAACGCCGCTAAAA-ACTGAGCACTAGCGACGCTTTCGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTC-GT
*
5339706 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTATTCGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCT-TTCGT
*
5339747 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTTCGA
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGC-TTTCGT
*
5339788 AAAACGCCGCTAAAAGCCATAGCATTAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTC-GT
* *
5339829 AAAACGCCGCTAAAAGCCAGAGCATTGGCGGTGCTTTTCGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGC-TTTCGT
* *
5339870 AAAACGCTGCTAAAAGCCATAGCATTAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTC-GT
5339911 AAAACGCCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTTCGT
1 AAAACG-CCGCTAAAAGCCAGAGCATTAGCGGCGC-TTTCGT
5339953 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
5339968 ATCTCATAAC
Statistics
Matches: 237, Mismatches: 17, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
40 23 0.10
41 168 0.71
42 42 0.18
43 4 0.02
ACGTcount: A:0.31, C:0.26, G:0.24, T:0.19
Consensus pattern (40 bp):
AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGT
Found at i:5341038 original size:15 final size:15
Alignment explanation
Indices: 5341018--5341049 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
5341008 TTTAATTTAG
*
5341018 AAGATAAATGTATAT
1 AAGATAAATATATAT
5341033 AAGATAAATATATAT
1 AAGATAAATATATAT
5341048 AA
1 AA
5341050 AATATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:5341088 original size:24 final size:24
Alignment explanation
Indices: 5341021--5341088 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
5341011 AATTTAGAAG
* *
5341021 ATAAATGTATATAAGATAAATATAT
1 ATAAATATATATATGA-AAATATAT
* *
5341046 ATAAA-ATATTATTTTAAAATATAT
1 ATAAATATA-TATATGAAAATATAT
5341070 ATAAATATATATATGAAAA
1 ATAAATATATATATGAAAA
5341089 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
ATAAATATATATATGAAAATATAT
Found at i:5342239 original size:18 final size:18
Alignment explanation
Indices: 5342213--5342255 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
5342203 GAGTTTGGGG
*
5342213 AAACTCAGTGTGTAAGGA
1 AAACCCAGTGTGTAAGGA
5342231 AAACCCAGTGTGTAAGGA
1 AAACCCAGTGTGTAAGGA
5342249 AAACCCA
1 AAACCCA
5342256 TTCAAGGCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.16
Consensus pattern (18 bp):
AAACCCAGTGTGTAAGGA
Found at i:5344240 original size:26 final size:26
Alignment explanation
Indices: 5344204--5344261 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
5344194 CATGAAATTC
5344204 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
5344230 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
5344256 TTATCA
1 TTATCA
5344262 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:5349030 original size:53 final size:49
Alignment explanation
Indices: 5348941--5349045 Score: 129
Period size: 53 Copynumber: 2.1 Consensus size: 49
5348931 GATGGGCCAC
** *
5348941 TTATAAATAATTTTATCAATATAATAATATTGATCATTGTTTAAATATA
1 TTATAAATAATTTTATCAATATAATAATATTGATCATTACTTAAATAAA
* *
5348990 TTATAACTAATTTTTATCAAAATAGTATTAATATTGATCATTACTTAAATAAA
1 TTATAAATAA-TTTTATC--AATA-TAATAATATTGATCATTACTTAAATAAA
5349043 TTA
1 TTA
5349046 CATAACTCAC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
49 9 0.19
50 7 0.15
52 4 0.09
53 27 0.57
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.46
Consensus pattern (49 bp):
TTATAAATAATTTTATCAATATAATAATATTGATCATTACTTAAATAAA
Found at i:5353397 original size:29 final size:28
Alignment explanation
Indices: 5353363--5353465 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
5353353 TAATCGATCA
*
5353363 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* *
5353392 CGCACACATAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
5353421 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
5353450 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
5353466 ATCTTGTCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.05
29 61 0.94
30 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:5358281 original size:43 final size:43
Alignment explanation
Indices: 5358207--5358387 Score: 249
Period size: 43 Copynumber: 4.2 Consensus size: 43
5358197 ATTGGGCAAA
*
5358207 TTAGCGGCGTTTTTTAAAAAAAGCGCCGCTAAAGGTCCTGGTCT
1 TTAGCGGCG-TTTCTAAAAAAAGCGCCGCTAAAGGTCCTGGTCT
* * *
5358251 TTAGCGGCGTTTCTAAAAAAAGCGCCGCTAAA-GACCAGGACCT
1 TTAGCGGCGTTTCTAAAAAAAGCGCCGCTAAAGGTCCTGG-TCT
* * *
5358294 TTAGCGGCGTTTCTAGAAAAACGCACCGCGAAAGGTCCTGGTCT
1 TTAGCGGCGTTTCTA-AAAAAAGCGCCGCTAAAGGTCCTGGTCT
*
5358338 TTAGCGGCGTTTCT-AAAAAAGCGCCGCTAAAGGTCCTGATCT
1 TTAGCGGCGTTTCTAAAAAAAGCGCCGCTAAAGGTCCTGGTCT
5358380 TTAGCGGC
1 TTAGCGGC
5358388 ATTTTTTTCT
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
42 37 0.31
43 39 0.32
44 39 0.32
45 5 0.04
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (43 bp):
TTAGCGGCGTTTCTAAAAAAAGCGCCGCTAAAGGTCCTGGTCT
Found at i:5358328 original size:87 final size:86
Alignment explanation
Indices: 5358207--5358369 Score: 265
Period size: 87 Copynumber: 1.9 Consensus size: 86
5358197 ATTGGGCAAA
* * *
5358207 TTAGCGGCGTTTTTTAAAAAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTCTAAAAAAA
1 TTAGCGGCGTTTTCTAAAAAAAGCACCGCGAAAGGTCCTGGTCTTTAGCGGCGTTTCT-AAAAAA
5358272 GCGCCGCTAAAGACCAGGACCT
65 GCGCCGCTAAAGACCAGGACCT
*
5358294 TTAGCGGCG-TTTCTAGAAAAACGCACCGCGAAAGGTCCTGGTCTTTAGCGGCGTTTCTAAAAAA
1 TTAGCGGCGTTTTCTA-AAAAAAGCACCGCGAAAGGTCCTGGTCTTTAGCGGCGTTTCTAAAAAA
5358358 GCGCCGCTAAAG
65 GCGCCGCTAAAG
5358370 GTCCTGATCT
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
86 23 0.32
87 48 0.68
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.23
Consensus pattern (86 bp):
TTAGCGGCGTTTTCTAAAAAAAGCACCGCGAAAGGTCCTGGTCTTTAGCGGCGTTTCTAAAAAAG
CGCCGCTAAAGACCAGGACCT
Found at i:5360393 original size:12 final size:12
Alignment explanation
Indices: 5360376--5360400 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
5360366 ATAACTTTTC
5360376 TGAGTGTAAATT
1 TGAGTGTAAATT
5360388 TGAGTGTAAATT
1 TGAGTGTAAATT
5360400 T
1 T
5360401 TGTGGGTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (12 bp):
TGAGTGTAAATT
Found at i:5364555 original size:12 final size:12
Alignment explanation
Indices: 5364538--5364562 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
5364528 ATAAAAAAAC
5364538 AAAAAAATAAGA
1 AAAAAAATAAGA
5364550 AAAAAAATAAGA
1 AAAAAAATAAGA
5364562 A
1 A
5364563 GATACATACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAAAAATAAGA
Found at i:5368599 original size:14 final size:13
Alignment explanation
Indices: 5368581--5368624 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 13
5368571 AAAAAAAATC
5368581 AAAATAAAAAAAG
1 AAAATAAAAAAAG
5368594 AGAAATAAAAAGAA-
1 A-AAATAAAAA-AAG
5368608 AAAATCAAAAAAAG
1 AAAAT-AAAAAAAG
5368622 AAA
1 AAA
5368625 GAAAGAATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 7 0.26
14 18 0.67
15 2 0.07
ACGTcount: A:0.82, C:0.02, G:0.09, T:0.07
Consensus pattern (13 bp):
AAAATAAAAAAAG
Found at i:5369855 original size:64 final size:64
Alignment explanation
Indices: 5369772--5370013 Score: 342
Period size: 64 Copynumber: 3.8 Consensus size: 64
5369762 TCATTCATAA
* * *
5369772 CACATTTAGTTAGGTGCATTTGATTCATTTCGATAATAGCATCCTAATTATTTGACATCAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCAT
* *
5369836 TACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCGA-CCTAATTATTTGACATCAGTAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGC-ATCCTAATTATTTGACATCAGCAT
* * * *
5369900 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATGTGTCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCAT
* * * * *
5369964 CACGTTTAATTAGGAGTATTTGATTCATTTTGATCATAGCATCCTAATTA
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTA
5370014 GTTAGCATAA
Statistics
Matches: 161, Mismatches: 15, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
63 1 0.01
64 159 0.99
65 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCAT
Found at i:5370669 original size:44 final size:44
Alignment explanation
Indices: 5370590--5370675 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 44
5370580 AGCCCCAAAC
*
5370590 CTTATCTCTCTGAGGTAGCAAGAGAGCAGCTTGAAGATTGAAGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGAAGCTTGAAGATTGAAGT
5370634 CTTATCT-TCTTGAGGTAGCAAG-GAAGAAGAC-TGAAGATTGAA
1 CTTATCTCTC-TGAGGTAGCAAGAG-AGAAG-CTTGAAGATTGAA
5370676 TATTGGAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
43 3 0.08
44 34 0.89
45 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.27
Consensus pattern (44 bp):
CTTATCTCTCTGAGGTAGCAAGAGAGAAGCTTGAAGATTGAAGT
Found at i:5370786 original size:44 final size:44
Alignment explanation
Indices: 5370736--5370822 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
5370726 AAGCCCAAGC
* * **
5370736 CTTATCTCTCTGTGGTAGTAA-GAGAGCAGGTTGAAGATTGAAGT
1 CTTATCTCTCTGAGGTAGCAAGGA-AGCAGACTGAAGATTGAAGT
*
5370780 CTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAG
1 CTTATCTCTCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAG
5370823 ATTGGAAGAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
44 35 0.95
45 2 0.05
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.29
Consensus pattern (44 bp):
CTTATCTCTCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGT
Found at i:5370811 original size:146 final size:146
Alignment explanation
Indices: 5370543--5370962 Score: 635
Period size: 146 Copynumber: 2.9 Consensus size: 146
5370533 GCAGATGGCT
* * *
5370543 AATCTTATCTCCATGTATCGGCAATGGAGTAGATTTGAGCCCCAAACCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAG-CCCAAGCCTTATCTCTCTGAGGTAG
* *
5370608 CAAGAGAGCAGCTTGAAGATTGAAGTCTTATC-TTCTTGAGGTAGCAAGGAAGAAGACTGAAGAT
65 CAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTTC-TGAGGTAGCAAGGAAGCAGACTGAAGAT
*
5370672 TGAATATTGGAAAAGGCA
129 TGAAGATTGGAAAAGGCA
* * * *
5370690 AGTCTTATCTCCGTGTATCGGCAATGGAGCAGATTTAAGCCCAAGCCTTATCTCTCTGTGGTAGT
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCAAGCCTTATCTCTCTGAGGTAGC
5370755 AAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
66 AAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
*
5370820 AAGATTGGAAGAGGCA
131 AAGATTGGAAAAGGCA
* *
5370836 AATATTATCTCCATGTACCGGCAATGGAGCAGATTTAAGCCTCAAGACCTTATCTCTCTGAGGTA
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCC-CAAG-CCTTATCTCTCTGAGGTA
* * * * *
5370901 GCAAGAGAGCGGGTTGAAAATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAA
64 GCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAA
5370963 TATTACAGAT
Statistics
Matches: 248, Mismatches: 22, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
146 133 0.54
147 42 0.17
148 73 0.29
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (146 bp):
AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCAAGCCTTATCTCTCTGAGGTAGC
AAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
AAGATTGGAAAAGGCA
Found at i:5374898 original size:13 final size:13
Alignment explanation
Indices: 5374877--5374906 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
5374867 TTTAAACTAA
*
5374877 ACTTTTCAAAAGC
1 ACTTCTCAAAAGC
5374890 ACTTCTCAAAAGC
1 ACTTCTCAAAAGC
5374903 ACTT
1 ACTT
5374907 TTTCACAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (13 bp):
ACTTCTCAAAAGC
Found at i:5375828 original size:2 final size:2
Alignment explanation
Indices: 5375821--5375853 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
5375811 ATTAAAAGTA
5375821 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5375854 ATCTTCAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5376318 original size:16 final size:16
Alignment explanation
Indices: 5376293--5376325 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
5376283 GTTTACAACT
5376293 CTAGTATTTAATATTA
1 CTAGTATTTAATATTA
*
5376309 CTAGTTTTTAATATTA
1 CTAGTATTTAATATTA
5376325 C
1 C
5376326 AGGTATTGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.52
Consensus pattern (16 bp):
CTAGTATTTAATATTA
Found at i:5376514 original size:2 final size:2
Alignment explanation
Indices: 5376507--5376531 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
5376497 TACACAATTC
5376507 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
5376532 TTATGCTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5381603 original size:20 final size:20
Alignment explanation
Indices: 5381517--5381604 Score: 67
Period size: 20 Copynumber: 4.5 Consensus size: 20
5381507 TCTCTCAACA
*
5381517 AAAAT-TATA-AAAAAATCC
1 AAAATATATATAAAAATTCC
* *
5381535 AAAATAAATTTAAAAAATT-C
1 AAAATATATAT-AAAAATTCC
* ** *
5381555 AAAATA-ATTTTCAAATTTC
1 AAAATATATATAAAAATTCC
5381574 AAAATATATATAAAAATTCC
1 AAAATATATATAAAAATTCC
*
5381594 AAAATTTATAT
1 AAAATATATAT
5381605 TATTTAAAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
18 10 0.18
19 13 0.24
20 26 0.47
21 6 0.11
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATATATATAAAAATTCC
Found at i:5381624 original size:10 final size:10
Alignment explanation
Indices: 5381609--5381634 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
5381599 TTATATTATT
5381609 TAAAAAATTC
1 TAAAAAATTC
5381619 TAAAAAATTC
1 TAAAAAATTC
5381629 TAAAAA
1 TAAAAA
5381635 TATATAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (10 bp):
TAAAAAATTC
Found at i:5381960 original size:2 final size:2
Alignment explanation
Indices: 5381953--5382008 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
5381943 AACTCAAAAT
5381953 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5381995 TA T- TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
5382009 GAAGCCAACG
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5382168 original size:5 final size:5
Alignment explanation
Indices: 5382158--5382182 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
5382148 CTCTAAAAAA
5382158 TTAAT TTAAT TTAAT TTAAT TTAAT
1 TTAAT TTAAT TTAAT TTAAT TTAAT
5382183 CTCATTTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTAAT
Found at i:5382189 original size:15 final size:15
Alignment explanation
Indices: 5382158--5382191 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
5382148 CTCTAAAAAA
*
5382158 TTAATTTAATTTAAT
1 TTAATTTAATCTAAT
*
5382173 TTAATTTAATCTCAT
1 TTAATTTAATCTAAT
5382188 TTAA
1 TTAA
5382192 GTATTAATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (15 bp):
TTAATTTAATCTAAT
Found at i:5388351 original size:18 final size:18
Alignment explanation
Indices: 5388260--5388351 Score: 112
Period size: 18 Copynumber: 5.1 Consensus size: 18
5388250 CCAACTACTG
* *
5388260 TATACGTGAACAGTGCCG
1 TATACGTGAATAGTGCCA
* *
5388278 TATACGTGAATAGTACCG
1 TATACGTGAATAGTGCCA
* *
5388296 TATATGTAAATAGTGCCA
1 TATACGTGAATAGTGCCA
* *
5388314 TATATGTGAATAGTGTCA
1 TATACGTGAATAGTGCCA
5388332 TATACGTGAATAGTGCCA
1 TATACGTGAATAGTGCCA
5388350 TA
1 TA
5388352 AACGATCGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (18 bp):
TATACGTGAATAGTGCCA
Found at i:5393010 original size:18 final size:18
Alignment explanation
Indices: 5392919--5393010 Score: 112
Period size: 18 Copynumber: 5.1 Consensus size: 18
5392909 CCAACTACTG
* *
5392919 TATACGTGAACAGTGCCG
1 TATACGTGAATAGTGCCA
* *
5392937 TATACGTGAATAGTACCG
1 TATACGTGAATAGTGCCA
* *
5392955 TATATGTAAATAGTGCCA
1 TATACGTGAATAGTGCCA
* *
5392973 TATATGTGAATAGTGTCA
1 TATACGTGAATAGTGCCA
5392991 TATACGTGAATAGTGCCA
1 TATACGTGAATAGTGCCA
5393009 TA
1 TA
5393011 AACGATCGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (18 bp):
TATACGTGAATAGTGCCA
Found at i:5397672 original size:18 final size:18
Alignment explanation
Indices: 5397581--5397672 Score: 112
Period size: 18 Copynumber: 5.1 Consensus size: 18
5397571 CCAACTACTG
* *
5397581 TATACGTGAACAGTGCCG
1 TATACGTGAATAGTGCCA
* *
5397599 TATACGTGAATAGTACCG
1 TATACGTGAATAGTGCCA
* *
5397617 TATATGTAAATAGTGCCA
1 TATACGTGAATAGTGCCA
* *
5397635 TATATGTGAATAGTGTCA
1 TATACGTGAATAGTGCCA
5397653 TATACGTGAATAGTGCCA
1 TATACGTGAATAGTGCCA
5397671 TA
1 TA
5397673 AACGATCGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (18 bp):
TATACGTGAATAGTGCCA
Found at i:5402338 original size:18 final size:18
Alignment explanation
Indices: 5402247--5402338 Score: 112
Period size: 18 Copynumber: 5.1 Consensus size: 18
5402237 CCAACTACTG
* *
5402247 TATACGTGAACAGTGCCG
1 TATACGTGAATAGTGCCA
* *
5402265 TATACGTGAATAGTACCG
1 TATACGTGAATAGTGCCA
* *
5402283 TATATGTAAATAGTGCCA
1 TATACGTGAATAGTGCCA
* *
5402301 TATATGTGAATAGTGTCA
1 TATACGTGAATAGTGCCA
5402319 TATACGTGAATAGTGCCA
1 TATACGTGAATAGTGCCA
5402337 TA
1 TA
5402339 AACGATCGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (18 bp):
TATACGTGAATAGTGCCA
Found at i:5408292 original size:26 final size:26
Alignment explanation
Indices: 5408262--5408369 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
5408252 TGAAATTCCC
5408262 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
5408288 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
5408314 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
5408340 ATCATGAAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
5408366 ATCA
1 ATCA
5408370 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:5413579 original size:40 final size:39
Alignment explanation
Indices: 5413534--5413741 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
5413524 CGGAATACAA
*
5413534 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
5413574 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
5413614 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
5413654 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
5413694 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
5413734 CCGGATAT
1 CCGGATAT
5413742 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:5413674 original size:80 final size:81
Alignment explanation
Indices: 5413534--5413739 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
5413524 CGGAATACAA
* * *
5413534 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
5413598 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
5413614 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
5413677 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
5413694 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
5413740 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:5421676 original size:40 final size:40
Alignment explanation
Indices: 5421598--5421804 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
5421588 TCGAATACAA
* *
5421598 CCGGATATAACCACATGCAC-AATGCCTTCGGGTCTTAGC
1 CCGGATATAACGACTTGCACAAATGCCTTCGGGTCTTAGC
* *
5421637 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACGACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
5421677 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACGACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
5421717 CCGGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACGACTTGCACAAATGCCTTCGGGTCTTAGC
** * * * *
5421757 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACGACTTGCACAAATGCCTTCGGGTCTTAGC
5421797 CCGGATAT
1 CCGGATAT
5421805 CATTCAATTG
Statistics
Matches: 142, Mismatches: 23, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
39 17 0.12
40 124 0.87
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACGACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:5426397 original size:26 final size:26
Alignment explanation
Indices: 5426361--5426496 Score: 229
Period size: 26 Copynumber: 5.2 Consensus size: 26
5426351 TGATACAAAT
5426361 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
5426387 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
5426413 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
5426439 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
5426465 TGATAAT-GGCTTAGGTAAATGTTTCA
1 TGATAATAGG-TTAGGTAAATGTTTCA
5426491 TGATAA
1 TGATAA
5426497 GAATTTCATG
Statistics
Matches: 106, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
25 2 0.02
26 104 0.98
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:5429855 original size:26 final size:26
Alignment explanation
Indices: 5429825--5429878 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
5429815 TGAAATTCCC
5429825 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
5429851 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
5429877 AT
1 AT
5429879 AAATTTGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:5432712 original size:22 final size:21
Alignment explanation
Indices: 5432658--5432712 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
5432648 ACTTATTTTA
*
5432658 ATTTTATAAATTTTAAATATT
1 ATTTTATAAATTTCAAATATT
* *
5432679 ATTTGACAAAATTTCAAATTATT
1 ATTTTA-TAAATTTCAAA-TATT
*
5432702 TTTTTATAAAT
1 ATTTTATAAAT
5432713 ATTTTTAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
21 5 0.19
22 13 0.50
23 8 0.31
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (21 bp):
ATTTTATAAATTTCAAATATT
Found at i:5433070 original size:29 final size:30
Alignment explanation
Indices: 5433028--5433093 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
5433018 TAAAATATTG
*
5433028 AAAAAATAAAAAACAATTATTTAAAACTAT
1 AAAAAATAAAAAACAATTATTAAAAACTAT
* ** *
5433058 AAAAAAT-ATAAACTTTTATTAAAAATTAT
1 AAAAAATAAAAAACAATTATTAAAAACTAT
*
5433087 AATAAAT
1 AAAAAAT
5433094 CTATTTGAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 23 0.77
30 7 0.23
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (30 bp):
AAAAAATAAAAAACAATTATTAAAAACTAT
Found at i:5436196 original size:23 final size:23
Alignment explanation
Indices: 5436170--5436221 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
5436160 GTTAAAAGCA
5436170 GTAAATGAAGAAGAAAAAAAAGG
1 GTAAATGAAGAAGAAAAAAAAGG
* *
5436193 GTAAATGAAGAAGAAAAGAAGGG
1 GTAAATGAAGAAGAAAAAAAAGG
5436216 GTAAAT
1 GTAAAT
5436222 AAGTGTACGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.60, C:0.00, G:0.29, T:0.12
Consensus pattern (23 bp):
GTAAATGAAGAAGAAAAAAAAGG
Found at i:5436362 original size:2 final size:2
Alignment explanation
Indices: 5436355--5436383 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
5436345 TATAATAAGA
5436355 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5436384 TTGTCTAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5437936 original size:45 final size:46
Alignment explanation
Indices: 5437887--5437974 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
5437877 CATTTAAGCA
*
5437887 TTTAGATCAAAGGCCTG-AAAAACAAATTTATATATTTTTCTTAAT
1 TTTAGATCAAAAGCCTGAAAAAACAAATTTATATATTTTTCTTAAT
* *
5437932 TTTAGATCAAAAGCTTGAAAAAAGAAATTTATATATTTTTCTT
1 TTTAGATCAAAAGCCTGAAAAAACAAATTTATATATTTTTCTT
5437975 GAAGAGTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 15 0.38
46 24 0.62
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (46 bp):
TTTAGATCAAAAGCCTGAAAAAACAAATTTATATATTTTTCTTAAT
Found at i:5442233 original size:23 final size:23
Alignment explanation
Indices: 5442203--5442246 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
5442193 CCTAGAAAGA
*
5442203 TGAACCCTATGATGTATTCTAGG
1 TGAACCCTATGATGGATTCTAGG
5442226 TGAACCCTATGATGGATTCTA
1 TGAACCCTATGATGGATTCTA
5442247 TCTTTTGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (23 bp):
TGAACCCTATGATGGATTCTAGG
Found at i:5445964 original size:20 final size:20
Alignment explanation
Indices: 5445901--5445965 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
5445891 TAGATAAAAT
* *
5445901 ATAAAAAGATATAAAACATA
1 ATAAAAATATATAACACATA
* * *
5445921 AT-TAAATAAATAACATATA
1 ATAAAAATATATAACACATA
* *
5445940 GTAAAAATATATAACACACA
1 ATAAAAATATATAACACATA
5445960 ATAAAA
1 ATAAAA
5445966 TATCAATATA
Statistics
Matches: 33, Mismatches: 11, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
19 13 0.39
20 20 0.61
ACGTcount: A:0.66, C:0.08, G:0.03, T:0.23
Consensus pattern (20 bp):
ATAAAAATATATAACACATA
Found at i:5445995 original size:21 final size:19
Alignment explanation
Indices: 5445962--5446013 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
5445952 AACACACAAT
*
5445962 AAAATATCA-ATATAATAGA
1 AAAATAACATATATAATA-A
* *
5445981 ATAAATAATATATATATTAA
1 A-AAATAACATATATAATAA
5446001 AAAATAACATATA
1 AAAATAACATATA
5446014 ATAAAAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 12 0.44
20 8 0.30
21 7 0.26
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAATAACATATATAATAA
Found at i:5447885 original size:44 final size:44
Alignment explanation
Indices: 5447826--5448151 Score: 291
Period size: 44 Copynumber: 7.4 Consensus size: 44
5447816 TCGCTGTAAG
* * *
5447826 CACAGGAATGTCAAATCTGATATCTTCAATTTGTTCCCTATAAA
1 CACAGGGATGCCAAATCTGCTATCTTCAATTTGTTCCCTATAAA
*
5447870 CACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAA
1 CACAGGGATGCCAAATCTGCTATCTTCAATTTGTTCCCTATAAA
* *** * ** ** * *
5447914 CATAGGGATGCC--ATGCTAAAATCTTCGATCTACTTTGCTGTAAG
1 CACAGGGATGCCAAAT-CTGCTATCTTCAAT-TTGTTCCCTATAAA
* * * *
5447958 CACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAA
1 CACAGGGATGCCAAATCTGCTATCTTCAATTTGTTCCCTATAAA
* *
5448002 TACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAA
1 CACAGGGATGCCAAATCTGCTATCTTCAATTTGTTCCCTATAAA
** * * * * *
5448046 CACAGGGATGCC--ATGCTGAAATCTTCGATCTGCTTCACTGTAAG
1 CACAGGGATGCCAAAT-CTGCTATCTTCAATTTG-TTCCCTATAAA
* * *
5448090 CACAGGAATGTCAGATCTGCTATCTTCAATTTGTTCCCTATAAA
1 CACAGGGATGCCAAATCTGCTATCTTCAATTTGTTCCCTATAAA
* *
5448134 TACAGAGATGCCAAATCT
1 CACAGGGATGCCAAATCT
5448152 TGTTTCTTTG
Statistics
Matches: 217, Mismatches: 57, Indels: 16
0.75 0.20 0.06
Matches are distributed among these distances:
42 4 0.02
43 21 0.10
44 164 0.76
45 24 0.11
46 4 0.02
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (44 bp):
CACAGGGATGCCAAATCTGCTATCTTCAATTTGTTCCCTATAAA
Found at i:5447958 original size:132 final size:132
Alignment explanation
Indices: 5447815--5448151 Score: 584
Period size: 132 Copynumber: 2.6 Consensus size: 132
5447805 TTGGATCTGT
* * *
5447815 TTCGCTGTAAGCACAGGAATGTCAAATCTGATATCTTCAATTTGTTCCCTATAAACACAGGGATG
1 TTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAATTTGTTCCCTATAAATACAGGGATG
*
5447880 CCAAATCTGCTATCTTCAACTTGTTCCCTATAAACATAGGGATGCCATGCTAAAATCTTCGATCT
66 CCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCT
5447945 AC
131 AC
* *
5447947 TTTGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAATACAGGGATG
1 TTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAATTTGTTCCCTATAAATACAGGGATG
*
5448012 CCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCT
66 CCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCT
*
5448077 GC
131 AC
* *
5448079 TTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAATTTGTTCCCTATAAATACAGAGATG
1 TTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAATTTGTTCCCTATAAATACAGGGATG
5448144 CCAAATCT
66 CCAAATCT
5448152 TGTTTCTTTG
Statistics
Matches: 193, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 193 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (132 bp):
TTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAATTTGTTCCCTATAAATACAGGGATG
CCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCT
AC
Found at i:5449056 original size:13 final size:13
Alignment explanation
Indices: 5449038--5449086 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
5449028 GCCTCTCCAT
5449038 TTTTTCCTTTTAA
1 TTTTTCCTTTTAA
5449051 TTTTT-CTTTTAA
1 TTTTTCCTTTTAA
* **
5449063 TTTTTTCTTTTCT
1 TTTTTCCTTTTAA
5449076 TTTTTCCTTTT
1 TTTTTCCTTTT
5449087 TTTTTTTGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
12 12 0.38
13 20 0.62
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTCCTTTTAA
Found at i:5449093 original size:13 final size:12
Alignment explanation
Indices: 5449036--5449092 Score: 62
Period size: 13 Copynumber: 4.6 Consensus size: 12
5449026 TGGCCTCTCC
5449036 ATTTTTTCCTTTT
1 ATTTTTT-CTTTT
*
5449049 AATTTTTCTTTT
1 ATTTTTTCTTTT
5449061 AATTTTTTCTTTT
1 -ATTTTTTCTTTT
*
5449074 CTTTTTTCCTTTT
1 ATTTTTT-CTTTT
5449087 -TTTTTT
1 ATTTTTT
5449093 TGAAATAGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
12 17 0.44
13 22 0.56
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (12 bp):
ATTTTTTCTTTT
Found at i:5451866 original size:30 final size:30
Alignment explanation
Indices: 5451832--5451891 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
5451822 ACTTTGTCGA
5451832 ACCTTGTTGCCCCACAGTAGTTACCTTTGG
1 ACCTTGTTGCCCCACAGTAGTTACCTTTGG
5451862 ACCTTGTTGCCCCACAGTAGTTACCTTTGG
1 ACCTTGTTGCCCCACAGTAGTTACCTTTGG
5451892 TTGATTGACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.17, C:0.30, G:0.20, T:0.33
Consensus pattern (30 bp):
ACCTTGTTGCCCCACAGTAGTTACCTTTGG
Found at i:5456138 original size:20 final size:20
Alignment explanation
Indices: 5456074--5456139 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
5456064 TAGATAAAAT
*
5456074 ATAAAAATGATATAAAACATA
1 ATAAAAAT-ATATAACACATA
* * *
5456095 AT-TAAATAAATAACATATA
1 ATAAAAATATATAACACATA
* *
5456114 GTAAAAATATATAACACACA
1 ATAAAAATATATAACACATA
5456134 ATAAAA
1 ATAAAA
5456140 TATCAATATA
Statistics
Matches: 34, Mismatches: 10, Indels: 3
0.72 0.21 0.06
Matches are distributed among these distances:
19 10 0.29
20 22 0.65
21 2 0.06
ACGTcount: A:0.65, C:0.08, G:0.03, T:0.24
Consensus pattern (20 bp):
ATAAAAATATATAACACATA
Found at i:5457451 original size:136 final size:137
Alignment explanation
Indices: 5457205--5457490 Score: 493
Period size: 136 Copynumber: 2.1 Consensus size: 137
5457195 CATTGGGCCT
** ** *
5457205 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTAATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
5457270 AGCCCCTTATTCAGATAACAGTATGGCCTATAGGCCCATTGCAAAATACATGCAACATCAATAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTGCAAAATACATGCAACATCAATAAA
5457335 -ATATGC
131 CATATGC
5457341 AAGCCCATTTGGGTAACAGTAATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTAATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
5457406 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTGCAAAATACATGCAACATCAATAAA
5457471 CATATGC
131 CATATGC
5457478 AAGCCCATTTGGG
1 AAGCCCATTTGGG
5457491 GAGACTACTC
Statistics
Matches: 141, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
136 122 0.87
137 19 0.13
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTAATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTGCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:5459311 original size:26 final size:26
Alignment explanation
Indices: 5459280--5459439 Score: 223
Period size: 26 Copynumber: 6.2 Consensus size: 26
5459270 TGAAATGCCC
5459280 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
5459306 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
** * *
5459332 ATCATAAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
5459358 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
5459384 ATCATTGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
5459410 ATCATGGAACATTTACCT-AACACATT
1 ATCATGGAACATTTACCTAAAC-CATT
5459436 ATCA
1 ATCA
5459440 ATTTGTACCA
Statistics
Matches: 118, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
25 2 0.02
26 116 0.98
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:5459357 original size:52 final size:52
Alignment explanation
Indices: 5459290--5459439 Score: 264
Period size: 52 Copynumber: 2.9 Consensus size: 52
5459280 ATCATGGAAC
*
5459290 ATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCATAAAAT
1 ATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCATAAAAT
**
5459342 ATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCATTGAAT
1 ATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCATAAAAT
*
5459394 ATTTACCTAATCCATTATCATGGAACATTTACCTAACACATTATCA
1 ATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCA
5459440 ATTTGTACCA
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 94 1.00
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (52 bp):
ATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCATAAAAT
Found at i:5461042 original size:40 final size:40
Alignment explanation
Indices: 5460983--5461151 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
5460973 CGGGACTTTA
* * *
5460983 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
5461023 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
5461063 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
5461103 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
5461143 CCCGGATAT
1 CCCGGATAT
5461152 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:5469044 original size:40 final size:40
Alignment explanation
Indices: 5468985--5469153 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
5468975 CGGGACTTTA
* * *
5468985 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
5469025 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
5469065 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
5469105 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
5469145 CCCGGATAT
1 CCCGGATAT
5469154 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:5474188 original size:2 final size:2
Alignment explanation
Indices: 5474181--5474215 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
5474171 ATGTGCAAAA
* *
5474181 AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5474216 AAATATACAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:5474380 original size:2 final size:2
Alignment explanation
Indices: 5474375--5474428 Score: 58
Period size: 2 Copynumber: 28.0 Consensus size: 2
5474365 AACTAATGGC
* * *
5474375 AT AT AT AC AT A- AT AT AT AT AT A- AT AC AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
5474415 AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT
5474429 TAGAAATGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
1 2 0.05
2 42 0.95
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:5474406 original size:15 final size:15
Alignment explanation
Indices: 5474375--5474427 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
5474365 AACTAATGGC
*
5474375 ATATATACATAATAT
1 ATATATACATAACAT
5474390 ATATATA-ATACACAT
1 ATATATACATA-ACAT
*
5474405 ATATAT--AT-ATAT
1 ATATATACATAACAT
5474417 ATATATACATA
1 ATATATACATA
5474428 TTAGAAATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
12 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.40
Consensus pattern (15 bp):
ATATATACATAACAT
Found at i:5475098 original size:16 final size:16
Alignment explanation
Indices: 5475074--5475116 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
5475064 AAAAAAAATC
* *
5475074 TTTTTTTTTTTTTTTA
1 TTTTATTTTTTTTATA
*
5475090 TTTTATTTTATTTATA
1 TTTTATTTTTTTTATA
5475106 TTTTATGTTTT
1 TTTTAT-TTTT
5475117 AATATATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.14, C:0.00, G:0.02, T:0.84
Consensus pattern (16 bp):
TTTTATTTTTTTTATA
Found at i:5475279 original size:14 final size:15
Alignment explanation
Indices: 5475244--5475279 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
5475234 TTTTTTGGTT
5475244 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
5475259 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
5475273 TTTTTTT
1 TTTTTTT
5475280 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:5475279 original size:33 final size:30
Alignment explanation
Indices: 5475242--5475316 Score: 96
Period size: 30 Copynumber: 2.4 Consensus size: 30
5475232 TTTTTTTTGG
*
5475242 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAATT
1 TTTTTTTTTGCTGG-AATTTTTTGCTGG--ATT
**
5475275 TTTTTTGGTGCTGGAATTTTTTGCTGGATT
1 TTTTTTTTTGCTGGAATTTTTTGCTGGATT
5475305 TTTTTTTTTGCT
1 TTTTTTTTTGCT
5475317 TCCCCTCTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
30 13 0.35
32 12 0.32
33 12 0.32
ACGTcount: A:0.12, C:0.07, G:0.19, T:0.63
Consensus pattern (30 bp):
TTTTTTTTTGCTGGAATTTTTTGCTGGATT
Found at i:5475280 original size:15 final size:16
Alignment explanation
Indices: 5475243--5475281 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
5475233 TTTTTTTGGT
5475243 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
5475259 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
5475273 TTTTTTTTG
1 TTTTTTTTG
5475282 GTGCTGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:5475293 original size:32 final size:31
Alignment explanation
Indices: 5475242--5475316 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 31
5475232 TTTTTTTTGG
*
5475242 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTTGCTGGAAATTTTTTGCTGGAAA
**
5475273 TTTTTTTTGGTGCTGG-AATTTTTTGCTGGATT
1 TTTTTTTT--TGCTGGAAATTTTTTGCTGGAAA
5475305 TTTTTTTTTGCT
1 TTTTTTTTTGCT
5475317 TCCCCTCTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 4 0.10
31 8 0.21
32 21 0.54
33 6 0.15
ACGTcount: A:0.12, C:0.07, G:0.19, T:0.63
Consensus pattern (31 bp):
TTTTTTTTTGCTGGAAATTTTTTGCTGGAAA
Found at i:5475308 original size:14 final size:15
Alignment explanation
Indices: 5475243--5475310 Score: 63
Period size: 15 Copynumber: 4.5 Consensus size: 15
5475233 TTTTTTTGGT
5475243 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
5475258 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
5475273 TTTTTTTTGGTGCTGGAA
1 -TTTTTTT--TGCTGGAA
5475291 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
5475303 TTTTTTTT
1 TTTTTTTT
5475311 TTTGCTTCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
12 1 0.02
13 6 0.14
14 10 0.23
15 14 0.32
16 6 0.14
18 3 0.07
19 4 0.09
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.62
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:5475758 original size:35 final size:35
Alignment explanation
Indices: 5475718--5475823 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
5475708 GGGGTGTGTG
*
5475718 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
5475753 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
5475788 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
5475823 A
1 A
5475824 GAGGCAAGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:5476608 original size:48 final size:50
Alignment explanation
Indices: 5476532--5476678 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 50
5476522 ATATGACCTA
**
5476532 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
5476580 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAAC
*
5476634 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
5476679 GGAATTGGAA
Statistics
Matches: 84, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
47 1 0.01
48 36 0.43
49 1 0.01
50 1 0.01
51 3 0.04
52 1 0.01
53 3 0.04
54 37 0.44
55 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:5476914 original size:147 final size:140
Alignment explanation
Indices: 5476735--5477323 Score: 980
Period size: 147 Copynumber: 4.1 Consensus size: 140
5476725 TCAACTCACC
5476735 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
5476800 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGC
5476865 TCAACTCACCTCTCGCAA
123 TCAACTCACCTCTCGCAA
*
5476883 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
5476948 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
*
5477013 CCTCTCGCCA
131 CCTCTCGCAA
*
5477023 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
5477088 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
59 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
5477153 TAACTCACCTCTCGCAA
124 CAACTCACCTCTCGCAA
5477170 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
5477235 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
5477300 CCTCTCGCAA
131 CCTCTCGCAA
*
5477310 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
5477324 CTGTCACTTG
Statistics
Matches: 423, Mismatches: 11, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
140 196 0.46
142 2 0.00
143 2 0.00
144 1 0.00
145 1 0.00
147 211 0.50
148 10 0.02
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (140 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTCGCAA
Found at i:5476947 original size:70 final size:70
Alignment explanation
Indices: 5476834--5477323 Score: 863
Period size: 70 Copynumber: 6.9 Consensus size: 70
5476824 CATAAATTGA
*
5476834 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
5476899 AACAT
66 AACAT
*
5476904 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
5476969 AACAT
66 AACAT
*
5476974 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
5477039 AACATAAATT
66 AAC----A-T
*
5477049 GAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
5477114 GAAACAT
64 GAAACAT
*
5477121 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
5477186 AACAT
66 AACAT
5477191 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
5477256 AACAT
66 AACAT
*
5477261 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
5477324 CTGTCACTTG
Statistics
Matches: 403, Mismatches: 10, Indels: 14
0.94 0.02 0.03
Matches are distributed among these distances:
70 333 0.83
72 1 0.00
73 1 0.00
74 1 0.00
75 1 0.00
77 66 0.16
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACAT
Found at i:5477019 original size:217 final size:217
Alignment explanation
Indices: 5476735--5477323 Score: 1093
Period size: 217 Copynumber: 2.7 Consensus size: 217
5476725 TCAACTCACC
5476735 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
5476800 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
5476865 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
5476930 GAGGCTTAACTCACCTCTCGCAA
195 GAGGCTTAACTCACCTCTCGCAA
5476953 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
5477018 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
5477083 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
5477148 AGGCTTAACTCACCTCTCGCAA
196 AGGCTTAACTCACCTCTCGCAA
5477170 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
5477235 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
5477293 CAACTCACCTCTCGCAATGTGAGTTGATTTT
131 CAACTCACCTCTCGCAATATGAGTTGATTTT
5477324 CTGTCACTTG
Statistics
Matches: 368, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
210 61 0.17
212 1 0.00
213 1 0.00
217 295 0.80
218 10 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTTAACTCACCTCTCGCAA
Found at i:5489555 original size:2 final size:2
Alignment explanation
Indices: 5489542--5489669 Score: 58
Period size: 2 Copynumber: 67.0 Consensus size: 2
5489532 GGAATTTAAA
* * *
5489542 AT AT AC AT AT AT AT AT AT AT AT AT AT AT A- AT AGT AT TT A- AG
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT
* * * ** *
5489583 A- AT AT AT AC AT A- AG AA AT AT AT A- ACT A- AT GGC AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT -AT AT AT AT AT
* *
5489623 AT A- AT AT AT AT AT A- AT AC AC AT A- AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
5489662 AT AC AT AT
1 AT AT AT AT
5489670 TAGAAATGAT
Statistics
Matches: 96, Mismatches: 18, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
1 9 0.09
2 84 0.88
3 3 0.03
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (2 bp):
AT
Found at i:5490198 original size:11 final size:12
Alignment explanation
Indices: 5490182--5490218 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
5490172 AAGAAAAAAA
5490182 GGAAGAGAG-AG
1 GGAAGAGAGAAG
5490193 GGAAGAGAGAAG
1 GGAAGAGAGAAG
5490205 GG-AGAGAGAAG
1 GGAAGAGAGAAG
5490216 GGA
1 GGA
5490219 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:5490219 original size:11 final size:11
Alignment explanation
Indices: 5490180--5490229 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
5490170 GAAAGAAAAA
*
5490180 AAGGAAGAGAG
1 AAGGGAGAGAG
5490191 -AGGGAAGAGAG
1 AAGGG-AGAGAG
5490202 AAGGGAGAGAG
1 AAGGGAGAGAG
* *
5490213 AAGGGAGGGGG
1 AAGGGAGAGAG
5490224 AAGGGA
1 AAGGGA
5490230 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:5490526 original size:14 final size:15
Alignment explanation
Indices: 5490491--5490526 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
5490481 TTTTTTTGGT
5490491 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
5490506 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
5490520 TTTTTTT
1 TTTTTTT
5490527 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:5490527 original size:15 final size:16
Alignment explanation
Indices: 5490490--5490528 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
5490480 TTTTTTTTGG
5490490 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
5490506 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
5490520 TTTTTTTTG
1 TTTTTTTTG
5490529 GTGCTGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:5490555 original size:14 final size:15
Alignment explanation
Indices: 5490490--5490557 Score: 63
Period size: 15 Copynumber: 4.5 Consensus size: 15
5490480 TTTTTTTTGG
5490490 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
5490505 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
5490520 TTTTTTTTGGTGCTGGAA
1 -TTTTTTT--TGCTGGAA
5490538 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
5490550 TTTTTTTT
1 TTTTTTTT
5490558 TTTGCTTCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
12 1 0.02
13 6 0.14
14 10 0.23
15 14 0.32
16 6 0.14
18 3 0.07
19 4 0.09
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.62
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:5490560 original size:33 final size:32
Alignment explanation
Indices: 5490490--5490563 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 32
5490480 TTTTTTTTGG
*
5490490 TTTTTTT-TGCTGGAAATTTTTTTCTGGAAAT
1 TTTTTTTGTGCTGGAAATTTTTTGCTGGAAAT
*
5490521 TTTTTTTGGTGCTGG-AATTTTTTGCTGG-ATT
1 TTTTTTT-GTGCTGGAAATTTTTTGCTGGAAAT
*
5490552 TTTTTTTTTGCT
1 TTTTTTTGTGCT
5490564 TCCCCTCTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
30 4 0.11
31 16 0.42
32 12 0.32
33 6 0.16
ACGTcount: A:0.12, C:0.07, G:0.19, T:0.62
Consensus pattern (32 bp):
TTTTTTTGTGCTGGAAATTTTTTGCTGGAAAT
Found at i:5491003 original size:35 final size:35
Alignment explanation
Indices: 5490963--5491068 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
5490953 GGGGTGTGTG
*
5490963 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
5490998 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
5491033 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
5491068 A
1 A
5491069 GAGGCAAGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:5495051 original size:18 final size:18
Alignment explanation
Indices: 5495020--5495061 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
5495010 TTAAAAATAT
5495020 TTTTCTTTAAAATTT-TAA
1 TTTT-TTTAAAATTTATAA
*
5495038 TATTTTTTATAATTTATAA
1 T-TTTTTTAAAATTTATAA
5495057 TTTTT
1 TTTTT
5495062 ATCATTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTTTAAAATTTATAA
Found at i:5501953 original size:110 final size:110
Alignment explanation
Indices: 5501760--5501978 Score: 429
Period size: 110 Copynumber: 2.0 Consensus size: 110
5501750 AGGCTTAAGT
5501760 ACTGCATCTTTGATAAACTACCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGG
1 ACTGCATCTTTGATAAACTACCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGG
5501825 TACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATG
66 TACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATG
*
5501870 ACTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGG
1 ACTGCATCTTTGATAAACTACCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGG
5501935 TACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAAT
66 TACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAAT
5501979 AGGACCTTTT
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 108 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (110 bp):
ACTGCATCTTTGATAAACTACCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGG
TACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATG
Found at i:5503299 original size:144 final size:144
Alignment explanation
Indices: 5501871--5503279 Score: 2590
Period size: 144 Copynumber: 9.8 Consensus size: 144
5501861 TGGGGAATGA
5501871 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
1 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
5501936 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
66 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
*
5502001 CCAAGGCTTAAGGA
131 CCAAGGCTTAAGGT
5502015 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
1 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
5502080 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
66 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
* *
5502145 CCAAGGGTTAAGGA
131 CCAAGGCTTAAGGT
*
5502159 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGT
1 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
**
5502224 ACAATGAAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
66 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
5502289 CCAAGGCTTAAGGT
131 CCAAGGCTTAAGGT
*
5502303 CTGCATCTTTGATAAACTGCCTATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
1 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
5502368 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
66 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
* * *
5502433 CTAAGGGTTAAGGA
131 CCAAGGCTTAAGGT
5502447 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
1 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
5502512 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
66 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
5502577 CCAAGGCTTAAGGT
131 CCAAGGCTTAAGGT
5502591 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTT-GG-GAGGT
1 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
5502654 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
66 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
5502719 CCAAGGCTTAAGGT
131 CCAAGGCTTAAGGT
5502733 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
1 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
5502798 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
66 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
* *
5502863 CCAAGGGTTAAGGA
131 CCAAGGCTTAAGGT
5502877 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
1 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
5502942 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
66 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
5503007 CCAAGGCTTAAGGT
131 CCAAGGCTTAAGGT
* *
5503021 CTGCATCTTTGAT-AACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGT
1 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
** * *
5503085 ACAATGAAGTGAAATTTGCTAGATTACAAATTTCTTGGAGAATAGGACCTTTTAATAGATTAGAA
66 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
*
5503150 CCAAGGATTAAGGT
131 CCAAGGCTTAAGGT
* *
5503164 CTGCATCTTTGATAAACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGT
1 CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
**
5503229 ACAATGAAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTT
66 ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTT
5503280 GAAGTTGGTT
Statistics
Matches: 1232, Mismatches: 30, Indels: 6
0.97 0.02 0.00
Matches are distributed among these distances:
142 140 0.11
143 140 0.11
144 952 0.77
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.30
Consensus pattern (144 bp):
CTGCATCTTTGATAAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGT
ACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAA
CCAAGGCTTAAGGT
Found at i:5504867 original size:16 final size:17
Alignment explanation
Indices: 5504846--5504883 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
5504836 ATGTTTAAGA
*
5504846 AATTATAATTCT-TTGT
1 AATTATAAATCTCTTGT
5504862 AATTATAAATCTCTTGT
1 AATTATAAATCTCTTGT
5504879 AATTA
1 AATTA
5504884 CTACTTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.50
Consensus pattern (17 bp):
AATTATAAATCTCTTGT
Found at i:5505759 original size:10 final size:10
Alignment explanation
Indices: 5505744--5505817 Score: 51
Period size: 10 Copynumber: 7.3 Consensus size: 10
5505734 TTTAAAATGT
5505744 AAAAATTATA
1 AAAAATTATA
5505754 AAAAATTAT-
1 AAAAATTATA
*
5505763 AAAAATTATT
1 AAAAATTATA
*
5505773 GAAAATATATTA
1 AAAAAT-TA-TA
* * *
5505785 ATAATTTTTA
1 AAAAATTATA
* * *
5505795 AAAAGTTCTG
1 AAAAATTATA
5505805 AAAAATTATA
1 AAAAATTATA
5505815 AAA
1 AAA
5505818 TATAACTTGA
Statistics
Matches: 48, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
9 9 0.19
10 32 0.67
11 3 0.06
12 4 0.08
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.35
Consensus pattern (10 bp):
AAAAATTATA
Found at i:5506768 original size:24 final size:25
Alignment explanation
Indices: 5506725--5506779 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 25
5506715 AATTTTTTTC
*
5506725 AAATTGAGTCGAGTGAAATC-A-TG
1 AAATTGAGTCGAGCGAAATCGAGTG
5506748 AAATTCGAGTCGAGCCG-AATCGAGTG
1 AAATT-GAGTCGAG-CGAAATCGAGTG
5506774 AAATTG
1 AAATTG
5506780 TTTGAGTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 5 0.19
24 12 0.44
25 3 0.11
26 7 0.26
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (25 bp):
AAATTGAGTCGAGCGAAATCGAGTG
Found at i:5508239 original size:17 final size:17
Alignment explanation
Indices: 5508219--5508251 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
5508209 TATACATATT
5508219 ATAAAAATAA-ATAAAAA
1 ATAAAAA-AATATAAAAA
5508236 ATAAAAAAATATAAAA
1 ATAAAAAAATATAAAA
5508252 TTTTTACCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (17 bp):
ATAAAAAAATATAAAAA
Found at i:5509060 original size:22 final size:23
Alignment explanation
Indices: 5509023--5509068 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
5509013 TACACATGCA
*
5509023 TTTTTCATATTAATATATAT-ATG
1 TTTTTAATATTAATAT-TATCATG
5509046 TTTTTAATATT-ATATTATCATG
1 TTTTTAATATTAATATTATCATG
5509068 T
1 T
5509069 ATATGTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 3 0.14
22 8 0.38
23 10 0.48
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (23 bp):
TTTTTAATATTAATATTATCATG
Found at i:5510038 original size:64 final size:64
Alignment explanation
Indices: 5509965--5510174 Score: 149
Period size: 64 Copynumber: 3.2 Consensus size: 64
5509955 CTGGGCCAGA
*
5509965 GCCCTTTTCAGATTACAATAAACTAGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTAGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
5510029 GCCCATTTCAAAATAC-ATGCAACATCAATAACATATGCAAGCCC--ATTTGGGTAACAGTGGTA
1 GCCCATTTCAGATTACAAT--AA-A-CTAGGCCTTA-GC---CCCTTATTCAGATAACA---GTA
* *
5510091 CTGGGCCAGA-
55 -TGGCCCATAG
* *
5510101 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTAGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
5510165 GCCCATTTCA
1 GCCCATTTCA
5510175 AAATACATGC
Statistics
Matches: 102, Mismatches: 28, Indels: 32
0.63 0.17 0.20
Matches are distributed among these distances:
63 9 0.09
64 25 0.25
65 5 0.05
66 1 0.01
67 14 0.14
68 4 0.04
69 13 0.13
70 1 0.01
71 5 0.05
72 16 0.16
73 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTAGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:5510175 original size:136 final size:136
Alignment explanation
Indices: 5509931--5510215 Score: 543
Period size: 136 Copynumber: 2.1 Consensus size: 136
5509921 CATTGGGCCT
**
5509931 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
5509996 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
5510061 ATATGC
131 ATATGC
*
5510067 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
5510132 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
5510197 ATATGC
131 ATATGC
5510203 AAGCCCATTTGGG
1 AAGCCCATTTGGG
5510216 GAGATTACTC
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 146 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:5510268 original size:21 final size:21
Alignment explanation
Indices: 5510222--5510269 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
5510212 TGGGGAGATT
*
5510222 ACTCAACCCACCAACCACTAC
1 ACTCCACCCACCAACCACTAC
*
5510243 ACTCCACCCTACCAGCCA-TAC
1 ACTCCACCC-ACCAACCACTAC
5510264 ACTCCA
1 ACTCCA
5510270 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCACCAACCACTAC
Found at i:5512037 original size:26 final size:26
Alignment explanation
Indices: 5512002--5512108 Score: 160
Period size: 26 Copynumber: 4.1 Consensus size: 26
5511992 CATGAATTTC
* *
5512002 TTATTATGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAACCCA
5512028 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
5512054 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
5512080 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
5512106 TTA
1 TTA
5512109 CCAATTTGTA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:5512738 original size:45 final size:44
Alignment explanation
Indices: 5512688--5512809 Score: 124
Period size: 45 Copynumber: 2.8 Consensus size: 44
5512678 CAATATGTAC
* *
5512688 ATATTATGTAAATATTTTGATGTTATATTATATATGCATTTTTAT
1 ATATTATGTATATATTTTGATATTATATTATAT-TGCATTTTTAT
* * *
5512733 ATATTATGTATATA-TAT-ATATCT-TTTTATATTGTATTTTTAT
1 ATATTATGTATATATTTTGATAT-TATATTATATTGCATTTTTAT
* * *
5512775 ATATCATGCATATATTTTGAATACTATATTATATT
1 ATATTATGTATATATTTTG-ATATTATATTATATT
5512810 TTTACATATT
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
42 22 0.35
43 12 0.19
44 4 0.06
45 24 0.39
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.56
Consensus pattern (44 bp):
ATATTATGTATATATTTTGATATTATATTATATTGCATTTTTAT
Found at i:5512748 original size:29 final size:29
Alignment explanation
Indices: 5512711--5512785 Score: 73
Period size: 29 Copynumber: 2.5 Consensus size: 29
5512701 ATTTTGATGT
5512711 TATATTATATATGCATTTTTATATAT-TATG
1 TATA-TATATATGCATTTTTATAT-TGTATG
* *
5512741 TATATATATATATC-TTTTTATATTGTATT
1 TATATATATAT-GCATTTTTATATTGTATG
*
5512770 TTTATATATCATGCAT
1 TATATATAT-ATGCAT
5512786 ATATTTTGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
28 1 0.03
29 28 0.76
30 8 0.22
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.57
Consensus pattern (29 bp):
TATATATATATGCATTTTTATATTGTATG
Found at i:5512822 original size:20 final size:19
Alignment explanation
Indices: 5512758--5512826 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 19
5512748 ATATATCTTT
*
5512758 TTATATTGTATTTTTATATA
1 TTATATTATATTTTTA-ATA
* *
5512778 TCATGCA-TATATTTTGAATA
1 TTAT--ATTATATTTTTAATA
*
5512798 CTATATTATATTTTTACATA
1 TTATATTATATTTTTA-ATA
5512818 TTATATTAT
1 TTATATTAT
5512827 GTATATATAT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
18 1 0.03
19 9 0.24
20 19 0.50
21 8 0.21
22 1 0.03
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (19 bp):
TTATATTATATTTTTAATA
Found at i:5512873 original size:45 final size:47
Alignment explanation
Indices: 5512783--5512879 Score: 112
Period size: 45 Copynumber: 2.1 Consensus size: 47
5512773 ATATATCATG
* *
5512783 CATATATTTTGAATACTATATTATATTTTTACATATTATATTATGTA
1 CATATATTTTCAATACTATATTATATTTTTACATACTATATTATGTA
* *
5512830 TATATATTTTCAATA-T-TATTAGT-TTTTTATATACTAT-TCTATGTA
1 CATATATTTTCAATACTATATTA-TATTTTTACATACTATAT-TATGTA
5512875 CATAT
1 CATAT
5512880 CTCCATATCA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
44 1 0.02
45 27 0.63
46 2 0.05
47 13 0.30
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.55
Consensus pattern (47 bp):
CATATATTTTCAATACTATATTATATTTTTACATACTATATTATGTA
Found at i:5524675 original size:40 final size:42
Alignment explanation
Indices: 5524572--5524677 Score: 164
Period size: 40 Copynumber: 2.6 Consensus size: 42
5524562 GAAAATGAAA
*
5524572 ATCAAGATGAAAACCCGAAAAGGGCATATAAAAAAAAAAGAG
1 ATCAAGGTGAAAACCCGAAAAGGGCATATAAAAAAAAAAGAG
*
5524614 ATCAAGGTG-AAACCCGAAAAGGGCATCT-AAAAAAAAAGAG
1 ATCAAGGTGAAAACCCGAAAAGGGCATATAAAAAAAAAAGAG
*
5524654 ATCAAGGTGAAAACCTG-AAAGGGC
1 ATCAAGGTGAAAACCCGAAAAGGGC
5524678 GTCTTGATTA
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
40 28 0.47
41 24 0.40
42 8 0.13
ACGTcount: A:0.53, C:0.14, G:0.23, T:0.10
Consensus pattern (42 bp):
ATCAAGGTGAAAACCCGAAAAGGGCATATAAAAAAAAAAGAG
Found at i:5526781 original size:28 final size:28
Alignment explanation
Indices: 5526745--5526802 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
5526735 AACACCCCTT
*
5526745 TAAATAATATTGTCTCTAAAATTAAACC
1 TAAACAATATTGTCTCTAAAATTAAACC
*
5526773 TAAACAATATTGTCTCTAAGATTAAACC
1 TAAACAATATTGTCTCTAAAATTAAACC
5526801 TA
1 TA
5526803 CATTCTGGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (28 bp):
TAAACAATATTGTCTCTAAAATTAAACC
Found at i:5533369 original size:215 final size:215
Alignment explanation
Indices: 5532998--5533408 Score: 777
Period size: 215 Copynumber: 1.9 Consensus size: 215
5532988 CATACAATAC
*
5532998 CTATAACACCCCAAACCCAACCTAGACGTTATGGCCGAATCTGGCGTGTCACATTAAAATGCTTT
1 CTATAACACCCCAAACCCAACCTAGACGTTATGGCCGAATCTGGCGTATCACATTAAAATGCTTT
5533063 TTCGAAAAAAAACTTTGTCTTATTAATAAATCTCGCTTGAAAGATAAAAGCCCCTTTTGTTTAAT
66 TTCGAAAAAAAACTTTGTCTTATTAATAAATCTCGCTTGAAAGATAAAAGCCCCTTTTGTTTAAT
5533128 TCTAAAGTCAACTTAATTATTTGTTAACCATTTTAAACCAGCCTTACTTTTAAAAACATGTTTGT
131 TCTAAAGTCAACTTAATTATTTGTTAACCATTTTAAACCAGCCTTACTTTTAAAAACATGTTTGT
5533193 TGCGGAAGCATTTCTGATAT
196 TGCGGAAGCATTTCTGATAT
* * *
5533213 CTATAACACCCCAAATCCGACCTAGACGTTATGGCCGAATCTGGCGTATCACTTTAAAATGCTTT
1 CTATAACACCCCAAACCCAACCTAGACGTTATGGCCGAATCTGGCGTATCACATTAAAATGCTTT
*
5533278 TTCGAAAAAAAACTTTGTCTTATTAATAAATCTCGCTTGAAAGATAAAAGCCTCTTTTGTTTAAT
66 TTCGAAAAAAAACTTTGTCTTATTAATAAATCTCGCTTGAAAGATAAAAGCCCCTTTTGTTTAAT
5533343 TCTAAAGTCAACTTAATTATTTGTTAACCATTTTAAACCAGCCTTACTTTTAAAAACATGTTTGT
131 TCTAAAGTCAACTTAATTATTTGTTAACCATTTTAAACCAGCCTTACTTTTAAAAACATGTTTGT
5533408 T
196 T
5533409 ACGAAAACGT
Statistics
Matches: 191, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
215 191 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (215 bp):
CTATAACACCCCAAACCCAACCTAGACGTTATGGCCGAATCTGGCGTATCACATTAAAATGCTTT
TTCGAAAAAAAACTTTGTCTTATTAATAAATCTCGCTTGAAAGATAAAAGCCCCTTTTGTTTAAT
TCTAAAGTCAACTTAATTATTTGTTAACCATTTTAAACCAGCCTTACTTTTAAAAACATGTTTGT
TGCGGAAGCATTTCTGATAT
Found at i:5533793 original size:33 final size:33
Alignment explanation
Indices: 5533748--5533823 Score: 134
Period size: 33 Copynumber: 2.3 Consensus size: 33
5533738 CGCATCAATA
*
5533748 TGGGCCTAAGCCCATTACAATAATGATGACACT
1 TGGGCCTTAGCCCATTACAATAATGATGACACT
*
5533781 TGGGCCTTAGCCCATTACAATAATGATGGCACT
1 TGGGCCTTAGCCCATTACAATAATGATGACACT
5533814 TGGGCCTTAG
1 TGGGCCTTAG
5533824 GCCCTAGTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (33 bp):
TGGGCCTTAGCCCATTACAATAATGATGACACT
Found at i:5537275 original size:17 final size:18
Alignment explanation
Indices: 5537255--5537288 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
5537245 AAGTGAATTG
5537255 AAATTAC-GAAATTAAAT
1 AAATTACAGAAATTAAAT
5537272 AAATTACAGAAATTAAA
1 AAATTACAGAAATTAAA
5537289 ATGAGGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26
Consensus pattern (18 bp):
AAATTACAGAAATTAAAT
Found at i:5538031 original size:10 final size:10
Alignment explanation
Indices: 5538012--5538061 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
5538002 TGAAATTCTA
5538012 AAAGATAAAT
1 AAAGATAAAT
5538022 ACAA-ATAAAT
1 A-AAGATAAAT
5538032 AAAGATAAAT
1 AAAGATAAAT
5538042 AAAGATAAAT
1 AAAGATAAAT
5538052 GAAA-ATAAAT
1 -AAAGATAAAT
5538062 CCTAAAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.05
10 30 0.81
11 5 0.14
ACGTcount: A:0.70, C:0.02, G:0.08, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:5539256 original size:13 final size:12
Alignment explanation
Indices: 5539228--5539261 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
5539218 ATTAAAATTT
*
5539228 TGAATATAATCA
1 TGAATATAAGCA
5539240 TGAATATCAAGCA
1 TGAATAT-AAGCA
5539253 TGAATATAA
1 TGAATATAA
5539262 CCATTTCCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (12 bp):
TGAATATAAGCA
Found at i:5540047 original size:42 final size:42
Alignment explanation
Indices: 5539928--5540056 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
5539918 CACATAGTAC
* * *
5539928 CATACCAATGCCATATCCTAGATATGGTCTTACATGTAATCT
1 CATACCGATGCCATATCCCAGATATGGTCTTACACGTAATCT
** * * * *
5539970 TGTATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCT
1 CATACCGATGCC-ATATCCCAGATATGGTCTTACACGTAATCT
*
5540013 CATACCGATGCCATATCCCAAATATGGTCTTACACGTAATCT
1 CATACCGATGCCATATCCCAGATATGGTCTTACACGTAATCT
5540055 CA
1 CA
5540057 ATAACCCTAA
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 36 0.51
43 34 0.49
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.29
Consensus pattern (42 bp):
CATACCGATGCCATATCCCAGATATGGTCTTACACGTAATCT
Found at i:5546713 original size:144 final size:144
Alignment explanation
Indices: 5546509--5546772 Score: 474
Period size: 144 Copynumber: 1.8 Consensus size: 144
5546499 AGATCTAATT
* * *
5546509 CAACCAAATTCGTTAGTCTCCCAATATCTTCTGGAATGGATCCATTAAGTTGGTTTCTTTGAAGG
1 CAACCAAATTCATTAGTCTCCCAATATCTTCTGGAATGGATCCATCAAGTTGGTTGCTTTGAAGG
*
5546574 GACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGATTGGACCAAAAAGATAATTGGA
66 AACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGATTGGACCAAAAAGATAATTGGA
5546639 GGATAGATTCAGTG
131 GGATAGATTCAGTG
5546653 CAACCAAATTCATTAGTCTCCCAATATCTTCTGGAATGGATCCATCAAGTTGGTTGCTTTGAAGG
1 CAACCAAATTCATTAGTCTCCCAATATCTTCTGGAATGGATCCATCAAGTTGGTTGCTTTGAAGG
* *
5546718 AACAACGAGGCAAGATTGGTTAAGTTGCTGATAGATGATGGGATTGGACCAAAAA
66 AACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGATTGGACCAAAAA
5546773 CCAATTGTTT
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
144 114 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (144 bp):
CAACCAAATTCATTAGTCTCCCAATATCTTCTGGAATGGATCCATCAAGTTGGTTGCTTTGAAGG
AACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGATTGGACCAAAAAGATAATTGGA
GGATAGATTCAGTG
Found at i:5567107 original size:72 final size:72
Alignment explanation
Indices: 5567002--5567196 Score: 241
Period size: 72 Copynumber: 2.7 Consensus size: 72
5566992 CTTGAAGAGT
** * * *
5567002 TTGAAACTGTTGGACCTATC-ACATAATCAAATTACTGGTCCTATTCCTTCTACCCTGTGCAACT
1 TTGAAACTGTTGGACCTATCTGGA-AACCAAATTACTGGTCCTATCCCTTCTACCCTGGGCAACT
5567066 TAACAAAC
65 TAACAAAC
* * * *
5567074 TTGAAACAGTTGGACCTATCTGGAAACCAAATTATTGGCCCTATCCCTTCTACCTTGGGCAACTT
1 TTGAAACTGTTGGACCTATCTGGAAACCAAATTACTGGTCCTATCCCTTCTACCCTGGGCAACTT
*
5567139 AACCAAC
66 AACAAAC
* * *
5567146 TT-AGAATTGTTGAACCTATCTGGAAACGAAATTACTGGTCCTATCCCTTCT
1 TTGA-AACTGTTGGACCTATCTGGAAACCAAATTACTGGTCCTATCCCTTCT
5567197 GCCTTGGGTA
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
71 1 0.01
72 103 0.98
73 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (72 bp):
TTGAAACTGTTGGACCTATCTGGAAACCAAATTACTGGTCCTATCCCTTCTACCCTGGGCAACTT
AACAAAC
Found at i:5567202 original size:72 final size:72
Alignment explanation
Indices: 5567029--5567216 Score: 243
Period size: 72 Copynumber: 2.6 Consensus size: 72
5567019 ATCACATAAT
* * * * *
5567029 CAAATTACTGGTCCTATTCCTTCTACCCTGTGCAACTTAACAAACTTGAAACAGTTGGACCTATC
1 CAAATTACTGGTCCTATCCCTTCTACCTTGGGCAACTTAACCAACTTGAAACAGTTGAACCTATC
5567094 TGGAAAC
66 TGGAAAC
* * **
5567101 CAAATTATTGGCCCTATCCCTTCTACCTTGGGCAACTTAACCAACTT-AGAATTGTTGAACCTAT
1 CAAATTACTGGTCCTATCCCTTCTACCTTGGGCAACTTAACCAACTTGA-AACAGTTGAACCTAT
5567165 CTGGAAAC
65 CTGGAAAC
* * * *
5567173 GAAATTACTGGTCCTATCCCTTCTGCCTTGGGTAAATTAACCAA
1 CAAATTACTGGTCCTATCCCTTCTACCTTGGGCAACTTAACCAA
5567217 TTTAAAAGAG
Statistics
Matches: 100, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
71 1 0.01
72 99 0.99
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.30
Consensus pattern (72 bp):
CAAATTACTGGTCCTATCCCTTCTACCTTGGGCAACTTAACCAACTTGAAACAGTTGAACCTATC
TGGAAAC
Found at i:5567672 original size:144 final size:144
Alignment explanation
Indices: 5567412--5567690 Score: 332
Period size: 144 Copynumber: 1.9 Consensus size: 144
5567402 CAATCCCTCA
* * * *
5567412 TGAAATTGGAAACTTAAAGAATTTGGTTGCATTGAATTTAAGTAACAACAATCTCAAGCATCGGA
1 TGAAATTGGAAACTTAAAGAATTTGGTTGAATTGAATCTAAGTAAAAACAAGCTCAAGCATCGGA
* * * *
5567477 TTCCTCAATCCCTAACTACTTTATCCAAATTGAGCTACTTGTACTTGGATTCAAAT-TTTCTACA
66 TCCCTCAATCACTAACTAATTTATCCAAATTGAGCTACTTGTACTTGGATTCAAATCTTT-TAAA
5567541 AGGTCCAATTCCTAG
130 AGGTCCAATTCCTAG
* * * **
5567556 TGAAATTGGAAACTTGAAGAATTTGTTTGAATTGAATCTAAGTAAAAACAAGCTCAATG-GTTTG
1 TGAAATTGGAAACTTAAAGAATTTGGTTGAATTGAATCTAAGTAAAAACAAGCTCAA-GCATCGG
* * * * *
5567620 ATCCCTTC-ATCACTAGCTAATTTATCTAGATTGAGCTATTTGTTCCTT-GATTCAAATCTTTTA
65 ATCCC-TCAATCACTAACTAATTTATCCAAATTGAGCTACTTG-TACTTGGATTCAAATCTTTTA
5567683 AAAGGTCC
128 AAAGGTCC
5567691 CTTACCATCT
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
144 103 0.91
145 10 0.09
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (144 bp):
TGAAATTGGAAACTTAAAGAATTTGGTTGAATTGAATCTAAGTAAAAACAAGCTCAAGCATCGGA
TCCCTCAATCACTAACTAATTTATCCAAATTGAGCTACTTGTACTTGGATTCAAATCTTTTAAAA
GGTCCAATTCCTAG
Found at i:5571622 original size:17 final size:17
Alignment explanation
Indices: 5571600--5571634 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
5571590 ATGAAATATG
5571600 TTAGAATCCCTGATTGA
1 TTAGAATCCCTGATTGA
5571617 TTAGAATCCCTGATTGA
1 TTAGAATCCCTGATTGA
5571634 T
1 T
5571635 CGAATTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (17 bp):
TTAGAATCCCTGATTGA
Found at i:5571945 original size:21 final size:21
Alignment explanation
Indices: 5571919--5571963 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
5571909 AATGGAGGAA
*
5571919 GTTGAGTAGTTTATCTACACC
1 GTTGAGTAGTTTATCCACACC
* *
5571940 GTTGAGTGGTTTATCCACATC
1 GTTGAGTAGTTTATCCACACC
5571961 GTT
1 GTT
5571964 TGAGCAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (21 bp):
GTTGAGTAGTTTATCCACACC
Found at i:5572153 original size:18 final size:18
Alignment explanation
Indices: 5572130--5572184 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 18
5572120 TTTATTACTG
5572130 GTGGTTTATCCACAATGA
1 GTGGTTTATCCACAATGA
*
5572148 GTGGTTCATCCACAACTATGA
1 GTGGTTTATCCAC-A--ATGA
5572169 GTGGTTTTATCCACAA
1 GTGG-TTTATCCACAA
5572185 CGATGTGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
18 12 0.39
19 2 0.06
21 9 0.29
22 8 0.26
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (18 bp):
GTGGTTTATCCACAATGA
Done.