Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 205 of 292
Found at i:60958449 original size:2 final size:2
Alignment explanation
Indices: 60958384--60958430 Score: 62
Period size: 2 Copynumber: 24.0 Consensus size: 2
60958374 GTATTACATA
*
60958384 AT AT AT ACT -T AT AT -T AT AT AT AT AT AT AC AT AT AT AT AT AT
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60958425 AT AT AT
1 AT AT AT
60958431 TAAAGATATG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
1 2 0.05
2 37 0.93
3 1 0.03
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:60958853 original size:3 final size:3
Alignment explanation
Indices: 60958834--60958909 Score: 134
Period size: 3 Copynumber: 25.0 Consensus size: 3
60958824 GTATATGCAT
*
60958834 ATA ATA AAA ATA TATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
60958880 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
60958910 TGAAAATACA
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
3 67 0.96
4 3 0.04
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:60959406 original size:14 final size:16
Alignment explanation
Indices: 60959380--60959414 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
60959370 AAAAAAAGGA
60959380 GAGAAAGGGAGA-GGG
1 GAGAAAGGGAGAGGGG
60959395 GAGAAA-GGAGAGGGG
1 GAGAAAGGGAGAGGGG
60959410 GAGAA
1 GAGAA
60959415 GAGAAGGCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (16 bp):
GAGAAAGGGAGAGGGG
Found at i:60961070 original size:67 final size:68
Alignment explanation
Indices: 60960915--60961095 Score: 217
Period size: 69 Copynumber: 2.7 Consensus size: 68
60960905 AAAGACTCAG
* * * *
60960915 CTCACCTCTCGCAATATGAATTGACTCTTT-AAAATAGAATTGAAAATACCTTAGCGTGCGCAAG
1 CTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAATAGAATTGAAAATACCTCAACGTGCG-AAG
60960979 GTCAA
64 GTCAA
* * *
60960984 CTCACTTCTCGCAATATGAGTTGATTTTTGAAACATA-AATTGAAATTACCTCAACGTGTG-AGG
1 CTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ATAGAATTGAAAATACCTCAACGTGCGAAGG
60961047 TCAA
65 TCAA
* * *
60961051 CTCACCTCTCGCAATATGAGCTGA-TTTTGAAAACAGAATTAAAAA
1 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAATTGAAAA
60961096 GCAAAAATTG
Statistics
Matches: 97, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
65 2 0.02
66 15 0.15
67 29 0.30
68 4 0.04
69 44 0.45
70 3 0.03
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.29
Consensus pattern (68 bp):
CTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAATTGAAAATACCTCAACGTGCGAAGGT
CAA
Found at i:60961216 original size:71 final size:71
Alignment explanation
Indices: 60961100--60961233 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
60961090 TAAAAAGCAA
* * *
60961100 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
60961165 AAACAT
66 AAACAT
* * *
60961171 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
60961234 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:60961313 original size:160 final size:158
Alignment explanation
Indices: 60960952--60961630 Score: 1114
Period size: 160 Copynumber: 4.4 Consensus size: 158
60960942 TTTAAAATAG
* * *
60960952 AATTGAAAATACCTTAGCGTGCGC-AAGG-TCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
60961015 AACATAAATTGAAATTACCTCAACGTG--TGAGG-TCAACTCACCTCTCGCAATATGAGCTGA--
66 AACATAAATTGAAATTACCTCAACGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
*
60961075 TT-TTGAAAACA-GAATTAAAAAGCAAA
131 TTCTTGAAAACATGAATTAAAAAGCAGA
60961101 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
60961166 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTC-TGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
60961231 TTTCTTGGAAAACATGAATTAAAAGGCAGA
130 TTTCTT-GAAAACATGAATTAAAAAGCAGA
60961261 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
60961326 AACATAAATTGAAATTA-CTCAACGTGTCTGAGGCTC-ACTCACCTCTCGCAATATGAGCTGATT
66 AACATAAATTGAAATTACCTCAACGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
60961389 TTCTTG-AAACATG------AAA-C--A
131 TTCTTGAAAACATGAATTAAAAAGCAGA
60961407 AATTGAAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AATTGAAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
60961472 -AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
65 AAACATAAATTGAAATTACCTCAACGTGTC-TGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
60961536 TTTTCTTGGAAAACATGAATTAAAAAGCAGA
129 TTTTCTT-GAAAACATGAATTAAAAAGCAGA
60961567 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
60961631 GAAAAACAAA
Statistics
Matches: 498, Mismatches: 6, Indels: 42
0.91 0.01 0.08
Matches are distributed among these distances:
146 27 0.05
147 66 0.13
148 9 0.02
149 56 0.11
150 4 0.01
151 69 0.14
154 5 0.01
155 35 0.07
156 1 0.00
157 37 0.07
158 11 0.02
159 73 0.15
160 105 0.21
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (158 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
TTCTTGAAAACATGAATTAAAAAGCAGA
Found at i:60961517 original size:306 final size:308
Alignment explanation
Indices: 60960952--60961630 Score: 1146
Period size: 306 Copynumber: 2.2 Consensus size: 308
60960942 TTTAAAATAG
* * *
60960952 AATTGAAAATACCTTAGCGTGCGC-AAGG-TCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
60961015 AACATAAATTGAAATTACCTCAACGTGTGAGGTCAACTCACCTCTCGCAATATGAGCTGATTTTG
66 AACATAAATTGAAATTACCTCAACGTGTGAGGTCAACTCACCTCTCGCAATATGAGCTGATTTTG
60961080 AAAACAGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTC
131 AAAAC--AATTAAAAAGC-AAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTC
60961145 GCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
193 GCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
*
60961210 CCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAGGCAGA
258 CCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGA
60961261 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
60961326 AACATAAATTGAAATTA-CTCAACGTGTCTGAGGCTC-ACTCACCTCTCGCAATATGAGCTGATT
66 AACATAAATTGAAATTACCTCAACGTG--TGAGG-TCAACTCACCTCTCGCAATATGAGCTGA--
*
60961389 TTCTTG-AAAC-A-T-GAAA-C-AAATTGAAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACT
126 TT-TTGAAAACAATTAAAAAGCAAAATTGAAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCACT
60961448 TCTCGCAATATGAGTTGATTTTTG-AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAA
189 TCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAA
60961512 CTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGA
254 CTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGA
60961567 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
60961631 GAAAAACAAA
Statistics
Matches: 356, Mismatches: 5, Indels: 21
0.93 0.01 0.05
Matches are distributed among these distances:
306 168 0.47
307 55 0.15
308 1 0.00
309 25 0.07
310 13 0.04
311 53 0.15
312 30 0.08
313 2 0.01
314 6 0.02
315 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (308 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTGAGGTCAACTCACCTCTCGCAATATGAGCTGATTTTG
AAAACAATTAAAAAGCAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCA
ATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCT
CTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGA
Found at i:60961522 original size:70 final size:71
Alignment explanation
Indices: 60961406--60961539 Score: 216
Period size: 70 Copynumber: 1.9 Consensus size: 71
60961396 AACATGAAAC
* * *
60961406 AAATTGAAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
60961471 GAACAT
66 GAACAT
* *
60961477 AAATTG-AAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
60961540 CTTGGAAAAC
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
70 52 0.90
71 6 0.10
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
GAACAT
Found at i:60966015 original size:69 final size:70
Alignment explanation
Indices: 60965887--60966159 Score: 347
Period size: 69 Copynumber: 3.8 Consensus size: 70
60965877 TTAAAAGCAG
*
60965887 AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACTCTCGCAATATGAGTTGA-TTTTGA
1 AAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTGA
60965951 AACAT
66 AACAT
* *
60965956 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG-TGATTTTCT
1 AAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCA-CTCTCGCAATATGAGTTGA-TTT-T
60966020 TGAAACATGATT
63 TGAAAC---A-T
*
60966032 AAGCAGAATTGAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 ----A-AATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCAC-TCTCGCAATATGAGTTGAT
60966096 TTTTGAAACAT
60 TTTTGAAACAT
* *
60966107 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCAC-CTCGCAATATGAG
1 AAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACTCTCGCAATATGAG
60966160 CTGAATTTCT
Statistics
Matches: 179, Mismatches: 9, Indels: 32
0.81 0.04 0.15
Matches are distributed among these distances:
69 52 0.29
70 23 0.13
71 30 0.17
72 7 0.04
75 2 0.01
76 2 0.01
79 8 0.04
80 44 0.25
81 11 0.06
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (70 bp):
AAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTGA
AACAT
Found at i:60966119 original size:151 final size:154
Alignment explanation
Indices: 60965839--60966260 Score: 696
Period size: 151 Copynumber: 2.7 Consensus size: 154
60965829 AGGAGACGAG
*
60965839 ACTCTCGCAATATGAGTTGATTTTCTTGGAAACATGAATTAAAAGCAGAAATTGAAATTACCTCA
1 ACTCTCGCAATATGAGCTGATTTTCTTGGAAACATGAATT-AAAGCAGAAATTGAAA-TACCTCA
60965904 GCGTGCCCTGAGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTA
64 GCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTA
60965968 CCTCAACGTGTCTTGAGGCTCAACTC
129 CCTCAACGTGTCTTGAGGCTCAACTC
60965994 ACCTCTCGCAATATGAG-TGATTTTCTT-GAAACATG-ATT-AAGCAG-AATTGAAATACCTCAG
1 A-CTCTCGCAATATGAGCTGATTTTCTTGGAAACATGAATTAAAGCAGAAATTGAAATACCTCAG
60966054 CGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTA
65 CGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTGAAACATAAATTGAAATTA
60966119 CCTCAACGTGTCTTGAGGCTCAACTC
129 CCTCAACGTGTCTTGAGGCTCAACTC
* *
60966145 AC-CTCGCAATATGAGCTGAATTTCTTGGAAAACATGAATTAAAAAGTAGAAATTGAAAATACCT
1 ACTCTCGCAATATGAGCTGATTTTCTTGG-AAACATGAATT--AAAGCAGAAATTG-AAATACCT
60966209 CAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAA
62 CAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAA
60966261 AAAACAAAAT
Statistics
Matches: 253, Mismatches: 2, Indels: 22
0.91 0.01 0.08
Matches are distributed among these distances:
149 43 0.17
150 36 0.14
151 57 0.23
152 7 0.03
153 6 0.02
154 8 0.03
155 11 0.04
156 20 0.08
157 13 0.05
158 52 0.21
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (154 bp):
ACTCTCGCAATATGAGCTGATTTTCTTGGAAACATGAATTAAAGCAGAAATTGAAATACCTCAGC
GTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACC
TCAACGTGTCTTGAGGCTCAACTC
Found at i:60978462 original size:2 final size:2
Alignment explanation
Indices: 60978402--60978443 Score: 59
Period size: 2 Copynumber: 21.0 Consensus size: 2
60978392 TATTACATAA
*
60978402 AT AT AT ACT -T AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60978444 TAAAGATATG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 34 0.94
3 1 0.03
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60978859 original size:3 final size:3
Alignment explanation
Indices: 60978851--60978925 Score: 150
Period size: 3 Copynumber: 25.0 Consensus size: 3
60978841 GTATATGCAT
60978851 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
60978899 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
60978926 TGAAAATACA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:60981902 original size:36 final size:36
Alignment explanation
Indices: 60981612--60981907 Score: 213
Period size: 36 Copynumber: 8.0 Consensus size: 36
60981602 AAAGGTATAA
* * *
60981612 AATAACTGATTATTACTGAATAATTGACTGTTACAG
1 AATAACTGATTGTTACTGAATAATTGATTGTTACTG
* * * * *
60981648 GATAATTGACTGTTACTGGAT-ATTAGACTGTTACTG
1 AATAACTGATTGTTACTGAATAATT-GATTGTTACTG
* * * *
60981684 AATAACTAAATATTACTGAATAATTGATCGTTACTG
1 AATAACTGATTGTTACTGAATAATTGATTGTTACTG
* * *
60981720 AATAACTGATTGTCACTGAATGAA-TGACTGTTATTG
1 AATAACTGATTGTTACTGAAT-AATTGATTGTTACTG
* **
60981756 AATAACTTAATTGTTACTGAATACCTGATT-TTACTG
1 AATAAC-TGATTGTTACTGAATAATTGATTGTTACTG
* * * *
60981792 AATAATTGACTGTTACTGGATAATCGATCAATTGATCGATACTG
1 AATAACTGATTGTTACT-G---A---AT-AATTGATTGTTACTG
* * *
60981836 AATAACTGGTTATTATTGAATAATTGATTGTTACTG
1 AATAACTGATTGTTACTGAATAATTGATTGTTACTG
* * *
60981872 AATAACTGACTGTTACTGAATAAATAATTGTT-CTG
1 AATAACTGATTGTTACTGAATAATTGATTGTTACTG
60981907 A
1 A
60981908 TTGTTAATAA
Statistics
Matches: 200, Mismatches: 46, Indels: 29
0.73 0.17 0.11
Matches are distributed among these distances:
35 16 0.08
36 133 0.67
37 24 0.12
39 1 0.00
40 1 0.00
42 2 0.01
43 6 0.03
44 17 0.09
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (36 bp):
AATAACTGATTGTTACTGAATAATTGATTGTTACTG
Found at i:60981903 original size:18 final size:18
Alignment explanation
Indices: 60981612--60981907 Score: 186
Period size: 18 Copynumber: 16.1 Consensus size: 18
60981602 AAAGGTATAA
*
60981612 AATAACTGATTATTACTG
1 AATAACTGATTGTTACTG
* * *
60981630 AATAATTGACTGTTACAG
1 AATAACTGATTGTTACTG
* * *
60981648 GATAATTGACTGTTACTG
1 AATAACTGATTGTTACTG
* * *
60981666 GAT-ATTAGACTGTTACTG
1 AATAACT-GATTGTTACTG
* * *
60981684 AATAACTAAATATTACTG
1 AATAACTGATTGTTACTG
* *
60981702 AATAATTGATCGTTACTG
1 AATAACTGATTGTTACTG
*
60981720 AATAACTGATTGTCACTG
1 AATAACTGATTGTTACTG
* *
60981738 AATGAA-TGACTGTTATTG
1 AAT-AACTGATTGTTACTG
*
60981756 AATAACTTAATTGTTACTG
1 AATAAC-TGATTGTTACTG
*
60981775 AATACCTGATT-TTACTG
1 AATAACTGATTGTTACTG
* *
60981792 AATAATTGACTGTTACTG
1 AATAACTGATTGTTACTG
* *
60981810 GATAATCGATCAATTGATCGATACTG
1 AATAA-C--T-GATTG-T---TACTG
* * *
60981836 AATAACTGGTTATTATTG
1 AATAACTGATTGTTACTG
*
60981854 AATAATTGATTGTTACTG
1 AATAACTGATTGTTACTG
*
60981872 AATAACTGACTGTTACTG
1 AATAACTGATTGTTACTG
* *
60981890 AATAAATAATTGTT-CTG
1 AATAACTGATTGTTACTG
60981907 A
1 A
60981908 TTGTTAATAA
Statistics
Matches: 216, Mismatches: 48, Indels: 29
0.74 0.16 0.10
Matches are distributed among these distances:
17 23 0.11
18 156 0.72
19 18 0.08
21 2 0.01
22 5 0.02
23 2 0.01
25 1 0.00
26 9 0.04
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (18 bp):
AATAACTGATTGTTACTG
Found at i:60985464 original size:40 final size:40
Alignment explanation
Indices: 60985405--60985546 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
60985395 AAATTGAATG
* * *
60985405 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
60985445 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
60985485 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
60985525 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
60985547 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:60985547 original size:40 final size:39
Alignment explanation
Indices: 60985444--60985572 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
60985434 TGCTGGAAAT
* * *
60985444 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
60985484 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
60985524 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
60985564 TATATCCGG
1 TATATCCGG
60985573 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:60987118 original size:28 final size:27
Alignment explanation
Indices: 60987033--60987261 Score: 138
Period size: 28 Copynumber: 8.1 Consensus size: 27
60987023 TTTTATAGTA
* * *
60987033 TTGCCCATGTTCTTTAAATTTTACAGTT
1 TTGCCCTTGTT-TTCAAATTTTACAATT
* *
60987061 TTGCCCTCCTATTTTTCAAATTTTATAATT
1 TTGCCCT--T-GTTTTCAAATTTTACAATT
* *
60987091 TTGCTCTTGTTCTTCAGATTTTACAATT
1 TTGCCCTTGTT-TTCAAATTTTACAATT
* * *
60987119 TCT-CCCTAGTTTTTAGATTTTACAATT
1 T-TGCCCTTGTTTTCAAATTTTACAATT
* *
60987146 TT-ACCTCTGTTCTTCAAATTTTACAGTT
1 TTGCCCT-TGTT-TTCAAATTTTACAATT
* * *
60987174 TTGCCCCTATTTTTAAATTTTACAATT
1 TTGCCCTTGTTTTCAAATTTTACAATT
* * *
60987201 TTGCCCATATTTTTTTATATTTTACAATT
1 TTGCCC-T-TGTTTTCAAATTTTACAATT
* * * *
60987230 TTACCCCTATTTTTTCAGATTTGACAATT
1 TT-GCCCT-TGTTTTCAAATTTTACAATT
60987259 TTG
1 TTG
60987262 ACCCAAAATT
Statistics
Matches: 160, Mismatches: 30, Indels: 22
0.75 0.14 0.10
Matches are distributed among these distances:
26 4 0.03
27 41 0.26
28 46 0.29
29 44 0.28
30 23 0.14
31 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.07, T:0.52
Consensus pattern (27 bp):
TTGCCCTTGTTTTCAAATTTTACAATT
Found at i:60987141 original size:27 final size:27
Alignment explanation
Indices: 60987106--60987265 Score: 128
Period size: 29 Copynumber: 5.7 Consensus size: 27
60987096 CTTGTTCTTC
60987106 AGATTTTACAATTTCT-CCCTAGTTTTT
1 AGATTTTACAATTT-TACCCTAGTTTTT
*
60987133 AGATTTTACAATTTTACCTCT-GTTCTTC
1 AGATTTTACAATTTTACC-CTAGTT-TTT
* * *
60987161 AAATTTTACAGTTTTGCCCCTA-TTTTT
1 AGATTTTACAATTTT-ACCCTAGTTTTT
* * *
60987188 AAATTTTACAATTTTGCCCATATTTTTTT
1 AGATTTTACAATTTTACCC-TA-GTTTTT
* *
60987217 ATATTTTACAATTTTACCCCTATTTTTT
1 AGATTTTACAATTTTA-CCCTAGTTTTT
*
60987245 CAGATTTGACAATTTTGACCC
1 -AGATTTTACAATTTT-ACCC
60987266 AAAATTTTAT
Statistics
Matches: 111, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
26 4 0.04
27 37 0.33
28 27 0.24
29 39 0.35
30 4 0.04
ACGTcount: A:0.24, C:0.19, G:0.06, T:0.51
Consensus pattern (27 bp):
AGATTTTACAATTTTACCCTAGTTTTT
Found at i:60987157 original size:55 final size:54
Alignment explanation
Indices: 60987040--60987243 Score: 182
Period size: 55 Copynumber: 3.6 Consensus size: 54
60987030 GTATTGCCCA
* * * *
60987040 TGTTCTTTAAATTTTACAGTTTTGCCCTCCTATTTTTCAAATTTTATAATTTTGCTCT
1 TGTTCTTCAAATTTTACAATTTT--CC-CCTATTTTT-AAATTTTACAATTTTCCTCT
* *
60987098 TGTTCTTCAGATTTTACAA-TTTCTCCCTAGTTTTTAGATTTTACAATTTTACCTC-
1 TGTTCTTCAAATTTTACAATTTTC-CCCTA-TTTTTAAATTTTACAATTTT-CCTCT
*
60987153 TGTTCTTCAAATTTTACAGTTTTGCCCCTATTTTTAAATTTTACAATTTTGCC-CAT
1 TGTTCTTCAAATTTTACAATTTT-CCCCTATTTTTAAATTTTACAATTTT-CCTC-T
* * *
60987209 AT-TTTTTTATATTTTACAATTTTACCCCTATTTTT
1 -TGTTCTTCAAATTTTACAATTTT-CCCCTATTTTT
60987244 TCAGATTTGA
Statistics
Matches: 123, Mismatches: 15, Indels: 18
0.79 0.10 0.12
Matches are distributed among these distances:
54 1 0.01
55 56 0.46
56 45 0.37
57 5 0.04
58 16 0.13
ACGTcount: A:0.22, C:0.18, G:0.06, T:0.54
Consensus pattern (54 bp):
TGTTCTTCAAATTTTACAATTTTCCCCTATTTTTAAATTTTACAATTTTCCTCT
Found at i:60987225 original size:29 final size:29
Alignment explanation
Indices: 60987045--60987266 Score: 122
Period size: 29 Copynumber: 7.8 Consensus size: 29
60987035 GCCCATGTTC
* *
60987045 TTTAAATTTTACAGTTTTGCCC-TCCTATTT
1 TTTAAATTTTACAATTTTGCCCAT-AT-TTT
* * * *
60987075 TTCAAATTTTATAATTTTGCTC-T-TGTTC
1 TTTAAATTTTACAATTTTGCCCATAT-TTT
* * *
60987103 TTCAGATTTTACAATTTCT-CCC-TA-GTT
1 TTTAAATTTTACAATTT-TGCCCATATTTT
* * * *
60987130 TTTAGATTTTACAATTTTACCTC-T-GTTC
1 TTTAAATTTTACAATTTTGCC-CATATTTT
* * *
60987158 TTCAAATTTTACAGTTTTGCCCCTA--TT
1 TTTAAATTTTACAATTTTGCCCATATTTT
60987185 TTTAAATTTTACAATTTTGCCCATATTTT
1 TTTAAATTTTACAATTTTGCCCATATTTT
* * *
60987214 TTTATATTTTACAATTTTACCCCTATTTT
1 TTTAAATTTTACAATTTTGCCCATATTTT
* * *
60987243 TTCAGATTTGACAATTTTGACCCA
1 TTTAAATTTTACAATTTTG-CCCA
60987267 AAATTTTATA
Statistics
Matches: 152, Mismatches: 30, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
26 1 0.01
27 43 0.28
28 42 0.28
29 44 0.29
30 22 0.14
ACGTcount: A:0.23, C:0.18, G:0.06, T:0.52
Consensus pattern (29 bp):
TTTAAATTTTACAATTTTGCCCATATTTT
Found at i:60988743 original size:2 final size:2
Alignment explanation
Indices: 60988736--60988765 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
60988726 TCATCAAATT
60988736 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60988766 AAGAATTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:60989817 original size:22 final size:22
Alignment explanation
Indices: 60989792--60989833 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
60989782 GTAATTACAC
* * *
60989792 ATAAAATATATATTATATTAAA
1 ATAAAAAATAGATTAAATTAAA
60989814 ATAAAAAATAGATTAAATTA
1 ATAAAAAATAGATTAAATTA
60989834 TATGTAAAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
ATAAAAAATAGATTAAATTAAA
Found at i:60990419 original size:22 final size:22
Alignment explanation
Indices: 60990391--60990433 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
60990381 TTTGGGTCAT
60990391 AGAAACTCTAACATTGTATAAC
1 AGAAACTCTAACATTGTATAAC
60990413 AGAAACTCTAACATTGTATAA
1 AGAAACTCTAACATTGTATAA
60990434 TTAAATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (22 bp):
AGAAACTCTAACATTGTATAAC
Found at i:60993965 original size:2 final size:2
Alignment explanation
Indices: 60993958--60993995 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
60993948 TTGGGACCAA
60993958 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60993996 TTGTATCTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60998646 original size:16 final size:16
Alignment explanation
Indices: 60998627--60998671 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
60998617 CATGTTTAGG
*
60998627 TCATTTTGAGTTCAAA
1 TCATTTCGAGTTCAAA
* *
60998643 TCATTTGGAGTTTAAA
1 TCATTTCGAGTTCAAA
*
60998659 TCACTTCGAGTTC
1 TCATTTCGAGTTC
60998672 CAGTTGAACG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.42
Consensus pattern (16 bp):
TCATTTCGAGTTCAAA
Found at i:61000181 original size:75 final size:72
Alignment explanation
Indices: 61000093--61000240 Score: 156
Period size: 73 Copynumber: 2.0 Consensus size: 72
61000083 ATGAAGAATA
* * *
61000093 TAAAAAAAAATTAA-TAAAATGTAAGGTTTTATTAGCAA-ATTATCTGATATCATATTTTATCTA
1 TAAAAAAAAATTAACT-AAACGTAAGG-TTT-TTA-CAACATTATCGGATATCATATATTATCTA
61000156 GTTTAATTCAT
62 GTTTAATTCAT
* * * * *
61000167 TAAAAAAAGGATTAACTGAACGTAAGGTTTTTACAACGTTATCGGATATGATATATTATCTTGTT
1 TAAAAAAA-AATTAACTAAACGTAAGGTTTTTACAACATTATCGGATATCATATATTATCTAGTT
*
61000232 TAGTTCAT
65 TAATTCAT
61000240 T
1 T
61000241 TGATTAGTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
72 3 0.05
73 34 0.55
74 11 0.18
75 13 0.21
76 1 0.02
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (72 bp):
TAAAAAAAAATTAACTAAACGTAAGGTTTTTACAACATTATCGGATATCATATATTATCTAGTTT
AATTCAT
Found at i:61000746 original size:50 final size:54
Alignment explanation
Indices: 61000692--61000814 Score: 128
Period size: 60 Copynumber: 2.2 Consensus size: 54
61000682 TTTTACTAGG
*
61000692 ATTATTATTAAATTTAAT-AAT-AAAT-AATAATTTAATCACATT-TAAATATA
1 ATTATTATTAAATTTAATAAATAAAATAAATAATTTAATAACATTCTAAATATA
* *
61000742 ATTATTACTAAATATAATTTAATAAAATAAAAATAAATAATTTAATAATATTCTTAATATA
1 ATTATTA-T---TA-AATTTAAT-AAAT-AAAATAAATAATTTAATAACATTCTAAATATA
61000803 ATTATTATTAAA
1 ATTATTATTAAA
61000815 ATATGAATTA
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
50 7 0.12
51 1 0.02
54 2 0.03
55 8 0.14
56 2 0.03
57 5 0.08
59 4 0.07
60 16 0.27
61 14 0.24
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (54 bp):
ATTATTATTAAATTTAATAAATAAAATAAATAATTTAATAACATTCTAAATATA
Found at i:61000843 original size:61 final size:60
Alignment explanation
Indices: 61000707--61000830 Score: 162
Period size: 60 Copynumber: 2.0 Consensus size: 60
61000697 TATTAAATTT
*
61000707 AATAATAAAT-AATAATTTAATCACATTTAAATATAATTATTACTAAATATAATTTAATAA
1 AATAA-AAATAAATAATTTAATAACATTTAAATATAATTATTACTAAATATAATTTAATAA
* * *
61000767 AATAAAAATAAATAATTTAATAATATTCTTAATATAATTATTATTAAAATATGAA-TTAATAA
1 AATAAAAATAAATAATTTAATAACATT-TAAATATAATTATTACT-AAATAT-AATTTAATAA
61000829 AA
1 AA
61000831 ATCATAACAT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
59 4 0.07
60 20 0.36
61 15 0.27
62 15 0.27
63 2 0.04
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (60 bp):
AATAAAAATAAATAATTTAATAACATTTAAATATAATTATTACTAAATATAATTTAATAA
Found at i:61002204 original size:63 final size:63
Alignment explanation
Indices: 61002105--61002230 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 63
61002095 CATGGAGATT
*
61002105 TTCTTATCACATCAAGAATGAGGCGCATCTTAATAGAGTTGGAATTACCAAATTTAAGTTATA
1 TTCTTATCACATCAAGAATGAGGCGCAGCTTAATAGAGTTGGAATTACCAAATTTAAGTTATA
* * *
61002168 TTCTTATCACATCGAGAATGAGGTGCAGCTTAATAGAGTTTGAATTACCAAATTTAAGTTATA
1 TTCTTATCACATCAAGAATGAGGCGCAGCTTAATAGAGTTGGAATTACCAAATTTAAGTTATA
61002231 AATCAGGTTG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (63 bp):
TTCTTATCACATCAAGAATGAGGCGCAGCTTAATAGAGTTGGAATTACCAAATTTAAGTTATA
Found at i:61004816 original size:51 final size:51
Alignment explanation
Indices: 61004761--61004894 Score: 234
Period size: 51 Copynumber: 2.6 Consensus size: 51
61004751 TGATACAAAT
61004761 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTT-CATGATAATGGGTTAGGTAAATGTTTCA
61004812 TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
*
61004863 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATG-TTCATGATAA
61004895 GAATTCATGT
Statistics
Matches: 80, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
50 23 0.29
51 47 0.59
52 10 0.12
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:61004823 original size:25 final size:25
Alignment explanation
Indices: 61004761--61004894 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 25
61004751 TGATACAAAT
*
61004761 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
61004787 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
*
61004812 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
61004837 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
61004863 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
61004889 TGATAA
1 TGATAA
61004895 GAATTCATGT
Statistics
Matches: 104, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
25 46 0.44
26 58 0.56
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:61010611 original size:26 final size:26
Alignment explanation
Indices: 61010574--61010709 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
61010564 TGATACAAAT
* *
61010574 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
61010600 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
61010626 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
61010652 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
61010678 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
61010704 TGATAA
1 TGATAA
61010710 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:61013652 original size:24 final size:24
Alignment explanation
Indices: 61013623--61013686 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
61013613 CACTTTTTCC
*
61013623 TTTCTTTTTTTTTTTCAAT-TTTT
1 TTTCTTTTTCTTTTTCAATCTTTT
*
61013646 TTGTCTTTTTCTTTTTCACTCTTTT
1 TT-TCTTTTTCTTTTTCAATCTTTT
* *
61013671 TTTCTTGTACTTTTTC
1 TTTCTTTTTCTTTTTC
61013687 TTTCACTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.06
24 27 0.77
25 6 0.17
ACGTcount: A:0.06, C:0.16, G:0.03, T:0.75
Consensus pattern (24 bp):
TTTCTTTTTCTTTTTCAATCTTTT
Found at i:61019681 original size:41 final size:41
Alignment explanation
Indices: 61019553--61019685 Score: 135
Period size: 41 Copynumber: 3.2 Consensus size: 41
61019543 TAGCGGCGTT
* * * *
61019553 TGCAAAAGGTCAAGCATTAGCAATGTTTATGAAAAAAAATGC
1 TGCAAAAGATCAAGCATTAGCGACGTTTATG-ATAAAAATGC
* * * **
61019595 CGC-AAAGGTCAAGCATTAGCGGCGTTTATGATAAAAGCGAC
1 TGCAAAAGATCAAGCATTAGCGACGTTTATGATAAAAATG-C
* *
61019636 -GCAAAAGATCAAACATTAGCGACATTTATGATAAAAATGC
1 TGCAAAAGATCAAGCATTAGCGACGTTTATGATAAAAATGC
61019676 TGCAAAAGAT
1 TGCAAAAGAT
61019686 ACATCGCAAA
Statistics
Matches: 75, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
40 9 0.12
41 64 0.85
42 2 0.03
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (41 bp):
TGCAAAAGATCAAGCATTAGCGACGTTTATGATAAAAATGC
Found at i:61019810 original size:36 final size:35
Alignment explanation
Indices: 61019768--61019864 Score: 101
Period size: 36 Copynumber: 2.7 Consensus size: 35
61019758 TTACGGTTTA
* *
61019768 GGTTTAATGTTTATTATTTTA-GGTTTATGGTTTTGT
1 GGTTTAATGTTTATGA-TTTAGGGTTTATGG-TTTGG
*
61019804 GTTTTAAAT-TTTATGATTTAGGGTTTATGGTTTGG
1 GGTTT-AATGTTTATGATTTAGGGTTTATGGTTTGG
*
61019839 GGTTTAATGTTTTAT-AGTTAGGGTTT
1 GGTTTAATG-TTTATGATTTAGGGTTT
61019865 TAGTGTTTCA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
34 3 0.06
35 22 0.42
36 24 0.46
37 3 0.06
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.57
Consensus pattern (35 bp):
GGTTTAATGTTTATGATTTAGGGTTTATGGTTTGG
Found at i:61019866 original size:22 final size:22
Alignment explanation
Indices: 61019827--61019872 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
61019817 TGATTTAGGG
* *
61019827 TTTATGGTTTGGGGTTTAATGT
1 TTTATAGTTAGGGGTTTAATGT
* *
61019849 TTTATAGTTAGGGTTTTAGTGT
1 TTTATAGTTAGGGGTTTAATGT
61019871 TT
1 TT
61019873 CAGGTTTTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.28, T:0.57
Consensus pattern (22 bp):
TTTATAGTTAGGGGTTTAATGT
Found at i:61020071 original size:7 final size:7
Alignment explanation
Indices: 61020059--61020085 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
61020049 TAGAGTTGAG
61020059 GATTTAT
1 GATTTAT
61020066 GATTTAT
1 GATTTAT
61020073 GATTTAT
1 GATTTAT
61020080 GATTTA
1 GATTTA
61020086 GAGTTTAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (7 bp):
GATTTAT
Found at i:61020071 original size:21 final size:20
Alignment explanation
Indices: 61020059--61020111 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
61020049 TAGAGTTGAG
* *
61020059 GATTTATGATTTATGATTTAT
1 GATTTA-GAGTTAGGATTTAT
* *
61020080 GATTTAGAGTTTAGGGTTTAA
1 GATTTAGAG-TTAGGATTTAT
61020101 GATTTAGAGTT
1 GATTTAGAGTT
61020112 CAGGCTTTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (20 bp):
GATTTAGAGTTAGGATTTAT
Found at i:61020127 original size:21 final size:21
Alignment explanation
Indices: 61020075--61020120 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
61020065 TGATTTATGA
* * *
61020075 TTTATGATTTAGAGTTTAGGG
1 TTTAAGATTTAGAGTTCAGGC
61020096 TTTAAGATTTAGAGTTCAGGC
1 TTTAAGATTTAGAGTTCAGGC
61020117 TTTA
1 TTTA
61020121 GGGTTTAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.04, G:0.24, T:0.46
Consensus pattern (21 bp):
TTTAAGATTTAGAGTTCAGGC
Found at i:61020639 original size:113 final size:117
Alignment explanation
Indices: 61020419--61020733 Score: 317
Period size: 113 Copynumber: 2.8 Consensus size: 117
61020409 GCCCTAGATT
* * * * * **
61020419 ATAAACGCCGCAATAGATCAA-CATTAGTGGCGCTTTTTGTAAAACGCCGCAAAAA--AATT-AA
1 ATAAACGCCGCAATAGAT-AAGAATTAGCGGCGCTTTTTGAAAAACACTGCAAAAATTTTTTAAA
* * * * ***
61020480 TTGAATGAAAACGAT-GCCATTTTAATGCTTTGTGGAATTGGCGGCACTAGCTA
65 TTAAATGGAAACG-TCGTCGTTTTAATGCTTTGTGGAATTAAAGGCACTAGCTA
* * * *
61020533 ATAAACGCCGCAATAGATAAGAATTAGCGGTGCTTTTT-AAAAA-A-TGC-CAATTTTTTTTAAT
1 ATAAACGCCGCAATAGATAAGAATTAGCGGCGCTTTTTGAAAAACACTGCAAAAATTTTTTAAAT
* *
61020594 TAAATGGAAATGTCG-CTGTTTTAATGCTTTTTGGAATTAAAGGCACTAGCTA
66 TAAATGGAAACGTCGTC-GTTTTAATGCTTTGTGGAATTAAAGGCACTAGCTA
* * *
61020646 ATGAACGCTGCAATAGATAAGAATTAGTGGCGCTTTTTGAAAAACACTGCAAAAATTTTTTAAAT
1 ATAAACGCCGCAATAGATAAGAATTAGCGGCGCTTTTTGAAAAACACTGCAAAAATTTTTTAAAT
*
61020711 TGAATGGAAACGTCGTCGTTTTA
66 TAAATGGAAACGTCGTCGTTTTA
61020734 GCTGTGGGTT
Statistics
Matches: 163, Mismatches: 27, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
110 2 0.01
111 2 0.01
112 4 0.02
113 83 0.51
114 37 0.23
115 1 0.01
116 3 0.02
117 30 0.18
118 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (117 bp):
ATAAACGCCGCAATAGATAAGAATTAGCGGCGCTTTTTGAAAAACACTGCAAAAATTTTTTAAAT
TAAATGGAAACGTCGTCGTTTTAATGCTTTGTGGAATTAAAGGCACTAGCTA
Found at i:61021226 original size:75 final size:75
Alignment explanation
Indices: 61021091--61021241 Score: 286
Period size: 75 Copynumber: 2.0 Consensus size: 75
61021081 TGTGTCTTTT
61021091 TAGTTTCATCCAATTTACCCCAATTGCTCCCCCGATAGCTGTTCTTTTTCCCCTTAACAAAATTT
1 TAGTTTCATCCAATTTACCCCAATTGCTCCCCCGATAGCTGTTCTTTTTCCCCTTAACAAAATTT
61021156 CCCCAATTCCC
66 -CCCAATTCCC
61021167 TAGTTTCATCCAATTTACCCCAATTGCT-CCCCGATAGCTGTTCTTTTTCCCCTTAACAAAATTT
1 TAGTTTCATCCAATTTACCCCAATTGCTCCCCCGATAGCTGTTCTTTTTCCCCTTAACAAAATTT
61021231 CCCAATTCCC
66 CCCAATTCCC
61021241 T
1 T
61021242 CTCTTCTCCA
Statistics
Matches: 75, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
74 11 0.15
75 36 0.48
76 28 0.37
ACGTcount: A:0.23, C:0.34, G:0.07, T:0.36
Consensus pattern (75 bp):
TAGTTTCATCCAATTTACCCCAATTGCTCCCCCGATAGCTGTTCTTTTTCCCCTTAACAAAATTT
CCCAATTCCC
Found at i:61021664 original size:23 final size:24
Alignment explanation
Indices: 61021638--61021684 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
61021628 TTCCCCCTCT
*
61021638 TCTTCCATA-ATACTCTTT-CTTTC
1 TCTT-CATATATAATCTTTACTTTC
61021661 TCTTCATATATAATCTTTACTTTC
1 TCTTCATATATAATCTTTACTTTC
61021685 AAACACCCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 12 0.57
24 5 0.24
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (24 bp):
TCTTCATATATAATCTTTACTTTC
Found at i:61024925 original size:26 final size:26
Alignment explanation
Indices: 61024889--61024955 Score: 125
Period size: 26 Copynumber: 2.6 Consensus size: 26
61024879 TGAAATTCCA
61024889 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
61024915 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
61024941 ATCATGAAACATTTA
1 ATCATGGAACATTTA
61024956 TGTGACAGCC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:61026786 original size:40 final size:40
Alignment explanation
Indices: 61026740--61026901 Score: 249
Period size: 40 Copynumber: 4.1 Consensus size: 40
61026730 ACTAAGATCT
*
61026740 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTTCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
*
61026780 GAAGGCATTTGTGCAAGTTAC--TATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* *
61026818 AAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* *
61026858 GAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
61026897 GAAGG
1 GAAGG
61026902 TACTTGGGTT
Statistics
Matches: 113, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 34 0.30
39 15 0.13
40 64 0.57
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
Found at i:61029492 original size:9 final size:9
Alignment explanation
Indices: 61029469--61029663 Score: 121
Period size: 9 Copynumber: 21.9 Consensus size: 9
61029459 TTCTTTAAAA
61029469 TTACATAAC
1 TTACATAAC
* *
61029478 TAACATACC
1 TTACATAAC
61029487 TTACATAA-
1 TTACATAAC
* * *
61029495 ATATATATC
1 TTACATAAC
*
61029504 ATATCATAAC
1 TTA-CATAAC
*
61029514 TTACATACC
1 TTACATAAC
* *
61029523 TCACAAAAC
1 TTACATAAC
* *
61029532 ATACCTAAC
1 TTACATAAC
*
61029541 TTACGTAAC
1 TTACATAAC
61029550 TTACATAA-
1 TTACATAAC
61029558 -TACATAA-
1 TTACATAAC
* * *
61029565 ATATATATC
1 TTACATAAC
* *
61029574 ATATCATAAA
1 TTA-CATAAC
61029584 TGT-CATAAC
1 T-TACATAAC
61029593 TTACATAAC
1 TTACATAAC
*
61029602 TTACATAAT
1 TTACATAAC
61029611 TTACATAAC
1 TTACATAAC
*
61029620 TTACATAAT
1 TTACATAAC
*
61029629 TTTCATAAC
1 TTACATAAC
* *
61029638 TTACATTAT
1 TTACATAAC
61029647 TTACATAAC
1 TTACATAAC
*
61029656 TAACATAA
1 TTACATAA
61029664 ATAAATGTCA
Statistics
Matches: 140, Mismatches: 39, Indels: 14
0.73 0.20 0.07
Matches are distributed among these distances:
7 7 0.05
8 11 0.08
9 112 0.80
10 9 0.06
11 1 0.01
ACGTcount: A:0.45, C:0.19, G:0.01, T:0.34
Consensus pattern (9 bp):
TTACATAAC
Found at i:61029567 original size:70 final size:70
Alignment explanation
Indices: 61029469--61029628 Score: 196
Period size: 70 Copynumber: 2.3 Consensus size: 70
61029459 TTCTTTAAAA
* * * *
61029469 TTACATAACTAACATACCTTACATAAATATATATCATATCATAACT-TACATACCTCACAAAACA
1 TTACATAACTTACATA--ATACATAAATATATATCATATCATAAATGT-CATAACTCACAAAACA
*
61029533 TACCTAAC
63 TACATAAC
* * * *
61029541 TTACGTAACTTACATAATACATAAATATATATCATATCATAAATGTCATAACTTACATAACTTAC
1 TTACATAACTTACATAATACATAAATATATATCATATCATAAATGTCATAACTCACAAAACATAC
*
61029606 ATAAT
66 ATAAC
61029611 TTACATAACTTACATAAT
1 TTACATAACTTACATAAT
61029629 TTTCATAACT
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
70 61 0.80
71 1 0.01
72 14 0.18
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.33
Consensus pattern (70 bp):
TTACATAACTTACATAATACATAAATATATATCATATCATAAATGTCATAACTCACAAAACATAC
ATAAC
Found at i:61031367 original size:12 final size:12
Alignment explanation
Indices: 61031350--61031385 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
61031340 AAGATCGATG
*
61031350 GATGAATCTGAT
1 GATGAATCTAAT
61031362 GATGAATCTAAT
1 GATGAATCTAAT
61031374 GATGAATCTAAT
1 GATGAATCTAAT
61031386 AAAGAGGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.33
Consensus pattern (12 bp):
GATGAATCTAAT
Found at i:61032142 original size:21 final size:20
Alignment explanation
Indices: 61032118--61032156 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
61032108 AATACACATG
*
61032118 ATATTAAACATGATAATAATA
1 ATATTAAACACGA-AATAATA
61032139 ATATTAAACACGAAATAA
1 ATATTAAACACGAAATAA
61032157 AATCATGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.28
Consensus pattern (20 bp):
ATATTAAACACGAAATAATA
Found at i:61032172 original size:2 final size:2
Alignment explanation
Indices: 61032165--61032195 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
61032155 AAAATCATGA
61032165 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
61032196 AACATATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:61032353 original size:11 final size:11
Alignment explanation
Indices: 61032339--61032408 Score: 52
Period size: 11 Copynumber: 5.7 Consensus size: 11
61032329 ATATGTACAT
61032339 AATATATATAA
1 AATATATATAA
61032350 AATATAGTATTAA
1 AATATA-TA-TAA
61032363 AA-ATATATACA
1 AATATATATA-A
*
61032374 TAATATAAAGTTAAA
1 -AATATATA--T-AA
61032389 AATAATATATAA
1 AAT-ATATATAA
61032401 AATATATA
1 AATATATA
61032409 CATAATATCT
Statistics
Matches: 48, Mismatches: 2, Indels: 18
0.71 0.03 0.26
Matches are distributed among these distances:
10 2 0.04
11 14 0.29
12 12 0.25
13 10 0.21
14 3 0.06
15 6 0.12
16 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (11 bp):
AATATATATAA
Found at i:61032366 original size:36 final size:36
Alignment explanation
Indices: 61032316--61032425 Score: 134
Period size: 36 Copynumber: 3.0 Consensus size: 36
61032306 AAGGTGCATT
* *
61032316 AATAGTATTGAAAATATGTACATAATATATA-TAAA
1 AATAGTATTAAAAATATATACATAATATATATTAAA
*
61032351 ATATAGTATTAAAAATATATACATAATATAAAGTTAAA
1 A-ATAGTATTAAAAATATATACATAATATATA-TTAAA
* *
61032389 AATAATA-TATAAAATATATACATAATATCTATTAAA
1 AATAGTATTA-AAAATATATACATAATATATATTAAA
61032425 A
1 A
61032426 GAATATACAC
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
35 1 0.02
36 35 0.54
37 24 0.37
38 5 0.08
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.35
Consensus pattern (36 bp):
AATAGTATTAAAAATATATACATAATATATATTAAA
Found at i:61032370 original size:25 final size:25
Alignment explanation
Indices: 61032339--61032406 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
61032329 ATATGTACAT
*
61032339 AATATATATAAAATATAGTA-TTAAA
1 AATATATATAAAATATA-AAGTTAAA
* *
61032364 AATATATACATAATATAAAGTTAAA
1 AATATATATAAAATATAAAGTTAAA
61032389 AATAATATATAAAATATA
1 AAT-ATATATAAAATATA
61032407 TACATAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
24 1 0.03
25 23 0.64
26 12 0.33
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (25 bp):
AATATATATAAAATATAAAGTTAAA
Found at i:61032442 original size:37 final size:37
Alignment explanation
Indices: 61032362--61032445 Score: 100
Period size: 37 Copynumber: 2.3 Consensus size: 37
61032352 TATAGTATTA
* *
61032362 AAAATATATACATAATATAAAGTTAAAAATAATATAT
1 AAAATATATACATAATATAAAGTTAAAAAGAATATAC
**
61032399 AAAATATATACATAATATCTA-TT-AAAAGAATATAC
1 AAAATATATACATAATATAAAGTTAAAAAGAATATAC
61032434 ACATAATATATA
1 A-A-AATATATA
61032446 TGCATGTATT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
35 11 0.27
36 3 0.07
37 27 0.66
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (37 bp):
AAAATATATACATAATATAAAGTTAAAAAGAATATAC
Found at i:61032577 original size:3 final size:3
Alignment explanation
Indices: 61032549--61032723 Score: 58
Period size: 3 Copynumber: 58.0 Consensus size: 3
61032539 AAGCTAAAAC
* * *
61032549 TAA TAC TAA TAA TAG TAA AAA CTAA TAA T-A TAA T-A TAA T-A TAAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA T-AA
* * * * * *
61032593 TAA -AA TAA AAA TAA -AGA -AA TAA TAG TAA TAA TAC GAA GAT TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * *
61032636 TAA TAG TAA TAG TAA CAA TAA TGA TAA TATA TATG TACA TGAA TAG TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TA-A T-AA TAA TAA
* **
61032685 TAA TAA TAA TAA TAC TAA -AA TAA TTAA TTT TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
61032724 AGTAATTAAA
Statistics
Matches: 124, Mismatches: 36, Indels: 24
0.67 0.20 0.13
Matches are distributed among these distances:
2 12 0.10
3 95 0.77
4 16 0.13
5 1 0.01
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:61033631 original size:22 final size:21
Alignment explanation
Indices: 61033599--61033647 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
61033589 GGTTAGTTTA
* *
61033599 GGTATTGGGTTATGGGTTTAAG
1 GGTAATGGGTTACGGG-TTAAG
*
61033621 TGTAATGGGTTACGGGTTAAG
1 GGTAATGGGTTACGGGTTAAG
61033642 GGTAAT
1 GGTAAT
61033648 TAGTTTTAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.22, C:0.02, G:0.39, T:0.37
Consensus pattern (21 bp):
GGTAATGGGTTACGGGTTAAG
Found at i:61037814 original size:43 final size:42
Alignment explanation
Indices: 61037743--61037912 Score: 196
Period size: 43 Copynumber: 4.0 Consensus size: 42
61037733 TGCCAAAGTT
* * *
61037743 AGCGACGTTTGTGGTAAAAGCGCCGCTAAAGATCATGTTCTTC
1 AGCGGCGTTTGCGATAAAAGCGCCGCTAAAG-TCATGTTCTTC
* * *
61037786 AACGGCGTTTGCAATAAAAGCGCTGCTAAAGGTCATGTTCTTC
1 AGCGGCGTTTGCGATAAAAGCGCCGCTAAA-GTCATGTTCTTC
* *
61037829 AGCGGCGTTTGCGATAAAAGCGCCGTTAAATGTCATGTTCTTT
1 AGCGGCGTTTGCGATAAAAGCGCCGCTAAA-GTCATGTTCTTC
* * * *
61037872 AGCGGCGTTTGTGATAAAAGTGCCACTAAAAGTTATGTTCT
1 AGCGGCGTTTGCGATAAAAGCGCCGCT-AAAGTCATGTTCT
61037913 ATAATAGTTT
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
43 104 0.96
44 4 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
AGCGGCGTTTGCGATAAAAGCGCCGCTAAAGTCATGTTCTTC
Found at i:61038768 original size:24 final size:22
Alignment explanation
Indices: 61038741--61038790 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
61038731 AATTCTTTTA
61038741 TTTTCCTTTTTTACATTATTTC-TC
1 TTTTCC-TTTTT-CATT-TTTCTTC
*
61038765 TTTTTCTTTTTCATTTTTCTTC
1 TTTTCCTTTTTCATTTTTCTTC
61038787 TTTT
1 TTTT
61038791 ATATTATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 4 0.17
22 10 0.42
23 5 0.21
24 5 0.21
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTCCTTTTTCATTTTTCTTC
Found at i:61038774 original size:22 final size:22
Alignment explanation
Indices: 61038749--61038790 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
61038739 TATTTTCCTT
61038749 TTTTACATTATTTC-TCTTTTTC
1 TTTTACATT-TTTCTTCTTTTTC
*
61038771 TTTTTCATTTTTCTTCTTTT
1 TTTTACATTTTTCTTCTTTT
61038791 ATATTATTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTACATTTTTCTTCTTTTTC
Found at i:61039543 original size:31 final size:30
Alignment explanation
Indices: 61039471--61039528 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
61039461 TATATTTATA
*
61039471 TATCATTATATTAATAATTTAAATATCATT
1 TATCATTATATTAAAAATTTAAATATCATT
61039501 TATCATTATATTAAAAATTTAAA-ATCAT
1 TATCATTATATTAAAAATTTAAATATCAT
61039529 ATTTTTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 5 0.19
30 22 0.81
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (30 bp):
TATCATTATATTAAAAATTTAAATATCATT
Found at i:61040694 original size:27 final size:27
Alignment explanation
Indices: 61040657--61040713 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
61040647 ACAATTTGAA
*
61040657 ATTTATCTCTTAATTTATT-TGATATT
1 ATTTATCTCTTAATTTATTATAATATT
* *
61040683 ATTTGATCTCTTTATTTTTTATAATATT
1 ATTT-ATCTCTTAATTTATTATAATATT
61040711 ATT
1 ATT
61040714 AAGTGATGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 4 0.15
27 13 0.50
28 9 0.35
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (27 bp):
ATTTATCTCTTAATTTATTATAATATT
Found at i:61043312 original size:16 final size:15
Alignment explanation
Indices: 61043291--61043325 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
61043281 TTTTTAAAAA
61043291 TATTTTGTAATTATAT
1 TATTTTGTAATT-TAT
*
61043307 TATTTTTTAATTTAT
1 TATTTTGTAATTTAT
61043322 TATT
1 TATT
61043326 ATTTTTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
TATTTTGTAATTTAT
Found at i:61043325 original size:18 final size:16
Alignment explanation
Indices: 61043291--61043332 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 16
61043281 TTTTTAAAAA
*
61043291 TATTTTGTAATTATAT
1 TATTTTTTAATTATAT
61043307 TATTTTTTAATTTATTAT
1 TATTTTTTAA-TTA-TAT
61043325 TATTTTTT
1 TATTTTTT
61043333 GAAAAATTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.39
17 3 0.13
18 11 0.48
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (16 bp):
TATTTTTTAATTATAT
Found at i:61044728 original size:46 final size:45
Alignment explanation
Indices: 61044668--61044933 Score: 330
Period size: 46 Copynumber: 6.0 Consensus size: 45
61044658 TTTGACATGA
* * * * * *
61044668 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** **
61044714 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
61044760 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
61044806 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
61044852 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
61044890 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
61044934 AGAGCACACT
Statistics
Matches: 195, Mismatches: 15, Indels: 20
0.85 0.07 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 147 0.75
47 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:61044897 original size:38 final size:38
Alignment explanation
Indices: 61044846--61044921 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
61044836 ACATTTTATA
61044846 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
61044884 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
61044922 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:61047084 original size:11 final size:11
Alignment explanation
Indices: 61047068--61047119 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
61047058 TATACTAAAT
61047068 AAATAATAATA
1 AAATAATAATA
*
61047079 AAATAAT-ATT
1 AAATAATAATA
* *
61047089 AAATATCTCATA
1 AAATA-ATAATA
*
61047101 AAATATTAATA
1 AAATAATAATA
61047112 AAATAATA
1 AAATAATA
61047120 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:61048053 original size:18 final size:18
Alignment explanation
Indices: 61048027--61048070 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
61048017 AATAGAAGTG
*
61048027 ATAAGTATACATTTAAA-A
1 ATAATTATA-ATTTAAATA
*
61048045 ATAATTATAATTTAAATT
1 ATAATTATAATTTAAATA
61048063 ATAATTAT
1 ATAATTAT
61048071 TAGTTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (18 bp):
ATAATTATAATTTAAATA
Found at i:61049418 original size:47 final size:47
Alignment explanation
Indices: 61049268--61049428 Score: 162
Period size: 47 Copynumber: 3.4 Consensus size: 47
61049258 TGTTAACATG
* * * * * * * *
61049268 TTGTGGATGAACCACTAGTTGAGCAGATGACTGCCAACTGAAATTCA
1 TTGTGGATAAACTACTGGTCGAGCAGATGACTACCGACTAAAATACA
* * * *
61049315 TTGTGGATAAA-TCACTTGTCGAGTAGATGACTACTGACTAAAATACG
1 TTGTGGATAAACT-ACTGGTCGAGCAGATGACTACCGACTAAAATACA
* * *
61049362 CTGTAGATAAACTACTGGTCGAGCAGATGTCTACCGACTAAAATACA
1 TTGTGGATAAACTACTGGTCGAGCAGATGACTACCGACTAAAATACA
*
61049409 TTGTGGATAAACAACTGGTC
1 TTGTGGATAAACTACTGGTC
61049429 AAGAAGATAA
Statistics
Matches: 91, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
47 90 0.99
48 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.27
Consensus pattern (47 bp):
TTGTGGATAAACTACTGGTCGAGCAGATGACTACCGACTAAAATACA
Found at i:61049623 original size:34 final size:35
Alignment explanation
Indices: 61049528--61049625 Score: 94
Period size: 34 Copynumber: 2.9 Consensus size: 35
61049518 AGCATTTAAT
* * **
61049528 TATGCTTTTAACAGAAC-ATATGGTAGC-AATCAA
1 TATGCTTATAACAGATCAATACAGTAGCAAATCAA
* *
61049561 TATGCTTATAACAGTTCAATACAATAGCAAAT-AA
1 TATGCTTATAACAGATCAATACAGTAGCAAATCAA
* * *
61049595 TATGCTTATAATAGATCGATTCAGTAGCAAA
1 TATGCTTATAACAGATCAATACAGTAGCAAA
61049626 AGTCATGCTT
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
33 14 0.27
34 35 0.67
35 3 0.06
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31
Consensus pattern (35 bp):
TATGCTTATAACAGATCAATACAGTAGCAAATCAA
Found at i:61051936 original size:20 final size:21
Alignment explanation
Indices: 61051911--61051950 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
61051901 CTGCTCATAT
61051911 TATTTTTTTAATT-TTAAAAA
1 TATTTTTTTAATTATTAAAAA
*
61051931 TATTTTTTTATTTATTAAAA
1 TATTTTTTTAATTATTAAAA
61051951 TTTTATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TATTTTTTTAATTATTAAAAA
Found at i:61062400 original size:28 final size:25
Alignment explanation
Indices: 61062360--61062412 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 25
61062350 AAACACACAT
61062360 AAATAAATAAAATATAATAATAATACTA
1 AAATAAATAAAATA-AA-AA-AATACTA
61062388 AAATAAAGT-AAATAAAAAAATACTA
1 AAATAAA-TAAAATAAAAAAATACTA
61062413 TATATAGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 7 0.29
26 2 0.08
27 2 0.08
28 12 0.50
29 1 0.04
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.25
Consensus pattern (25 bp):
AAATAAATAAAATAAAAAAATACTA
Found at i:61062913 original size:13 final size:13
Alignment explanation
Indices: 61062897--61062969 Score: 67
Period size: 13 Copynumber: 5.5 Consensus size: 13
61062887 AATATTAGCA
61062897 AATATATGTACAT
1 AATATATGTACAT
* *
61062910 AATATATATATAT
1 AATATATGTACAT
* *
61062923 AAAAATATATACAT
1 -AATATATGTACAT
* *
61062937 AATATA-GTATTAA
1 AATATATGTA-CAT
61062950 AATATATGTACAT
1 AATATATGTACAT
61062963 AATATAT
1 AATATAT
61062970 ACTTATTAGA
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
12 2 0.04
13 31 0.66
14 14 0.30
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (13 bp):
AATATATGTACAT
Found at i:61065535 original size:24 final size:26
Alignment explanation
Indices: 61065499--61065547 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
61065489 TCAAACATGC
61065499 ATTTAGGTCAATTTAAC-CCTAGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGT
* *
61065524 ATTTCGGT-AATTTATCTCCTAGGG
1 ATTTAGGTCAATTTAACTCCTAGGG
61065548 GTAAAACTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACTCCTAGGGT
Found at i:61067066 original size:26 final size:26
Alignment explanation
Indices: 61067030--61067165 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
61067020 ACATGAATTC
61067030 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
61067056 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
61067082 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
61067108 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
61067134 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
61067160 TTATCA
1 TTATCA
61067166 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:61068058 original size:18 final size:18
Alignment explanation
Indices: 61068031--61068065 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
61068021 ATAAAATGTT
61068031 ATAGGCCCAATATATTAG
1 ATAGGCCCAATATATTAG
*
61068049 ATAGGTCCAATATATTA
1 ATAGGCCCAATATATTA
61068066 CGTAAGCCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.31
Consensus pattern (18 bp):
ATAGGCCCAATATATTAG
Found at i:61068076 original size:18 final size:18
Alignment explanation
Indices: 61068035--61068081 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
61068025 AATGTTATAG
*
61068035 GCCCAATATATTAGATAG
1 GCCCAATATATTAGATAA
*
61068053 GTCCAATATATTACG-TAA
1 GCCCAATATATTA-GATAA
*
61068071 GCCCAAAATAT
1 GCCCAATATAT
61068082 AAAAAATTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 23 0.96
19 1 0.04
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (18 bp):
GCCCAATATATTAGATAA
Found at i:61069411 original size:36 final size:36
Alignment explanation
Indices: 61069364--61069435 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
61069354 CAACGGTTTA
*
61069364 ATTGTTCTTTGGTCCTTGGCTTAATTGCTAGCTAAG
1 ATTGCTCTTTGGTCCTTGGCTTAATTGCTAGCTAAG
61069400 ATTGCTCTTTGGTCCTTGGCTTAATTGCTAGCTAAG
1 ATTGCTCTTTGGTCCTTGGCTTAATTGCTAGCTAAG
61069436 GACTTGTTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.17, C:0.18, G:0.22, T:0.43
Consensus pattern (36 bp):
ATTGCTCTTTGGTCCTTGGCTTAATTGCTAGCTAAG
Found at i:61080193 original size:9 final size:9
Alignment explanation
Indices: 61080179--61080205 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
61080169 CAAGAACCAA
61080179 AAAAAAAAG
1 AAAAAAAAG
61080188 AAAAAAAAG
1 AAAAAAAAG
61080197 AAAAAAAAG
1 AAAAAAAAG
61080206 CACATATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:61081615 original size:21 final size:21
Alignment explanation
Indices: 61081591--61081659 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
61081581 TCTTAATTTG
61081591 ATTTGAAATTCTTTCGAATCA
1 ATTTGAAATTCTTTCGAATCA
* * *
61081612 ATTTCAAA-TCTTATCCTAATTCG
1 ATTTGAAATTCTT-T-CGAA-TCA
*
61081635 ATTTGAAATTCTTTTGAATCA
1 ATTTGAAATTCTTTCGAATCA
61081656 ATTT
1 ATTT
61081660 CGAATCAAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
20 4 0.11
21 14 0.38
22 5 0.14
23 10 0.27
24 4 0.11
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.46
Consensus pattern (21 bp):
ATTTGAAATTCTTTCGAATCA
Found at i:61081626 original size:44 final size:44
Alignment explanation
Indices: 61081578--61081665 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
61081568 GAGTCCTTTA
* *
61081578 TTATCTTAATTTGATTTGAAATTCTTTCGAATCAATTTCAAATC
1 TTATCCTAATTCGATTTGAAATTCTTTCGAATCAATTTCAAATC
* *
61081622 TTATCCTAATTCGATTTGAAATTCTTTTGAATCAATTTCGAATC
1 TTATCCTAATTCGATTTGAAATTCTTTCGAATCAATTTCAAATC
61081666 AAGTCGAGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.47
Consensus pattern (44 bp):
TTATCCTAATTCGATTTGAAATTCTTTCGAATCAATTTCAAATC
Found at i:61081974 original size:19 final size:21
Alignment explanation
Indices: 61081920--61081974 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
61081910 ATAAAAAATT
* *
61081920 GAATTTTTTATATATTATTTA
1 GAATTTTTTAAAAATTATTTA
*
61081941 GAATTTTATTTAAAATT-TTTA
1 GAATTTT-TTAAAAATTATTTA
61081962 -AATTTTTTAAAAA
1 GAATTTTTTAAAAA
61081975 ATAAAATTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 6 0.21
20 6 0.21
21 11 0.38
22 6 0.21
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (21 bp):
GAATTTTTTAAAAATTATTTA
Found at i:61082011 original size:19 final size:19
Alignment explanation
Indices: 61081990--61082026 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
61081980 ATTCTAGAGT
*
61081990 TTTTATAAA-TATTTTGAA
1 TTTTAAAAATTATTTTGAA
61082008 TTTTAAAAATTATTTTGAA
1 TTTTAAAAATTATTTTGAA
61082027 AATTATTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:61082036 original size:12 final size:12
Alignment explanation
Indices: 61082007--61082037 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
61081997 AATATTTTGA
*
61082007 ATTTTAAAAATT
1 ATTTTGAAAATT
61082019 ATTTTGAAAATT
1 ATTTTGAAAATT
61082031 ATTTTGA
1 ATTTTGA
61082038 TTTTATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (12 bp):
ATTTTGAAAATT
Found at i:61084379 original size:21 final size:21
Alignment explanation
Indices: 61084353--61084392 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
61084343 CACCTGCAAC
*
61084353 AAAAAGTATCAATACTTTTTG
1 AAAAAGTATCAATAATTTTTG
*
61084374 AAAAAGTATCGATAATTTT
1 AAAAAGTATCAATAATTTT
61084393 ATCATTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (21 bp):
AAAAAGTATCAATAATTTTTG
Found at i:61086558 original size:2 final size:2
Alignment explanation
Indices: 61086551--61086589 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
61086541 TATGTACGTA
*
61086551 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
61086590 AATAGTAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:61086648 original size:25 final size:23
Alignment explanation
Indices: 61086596--61086650 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
61086586 TATAAATAGT
61086596 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
61086619 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
61086644 AATAGTG
1 AATAGTG
61086651 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:61086732 original size:22 final size:22
Alignment explanation
Indices: 61086706--61086780 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
61086696 TATAAAATAG
*
61086706 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
61086728 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
61086753 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
61086775 AGATAA
1 ATATAA
61086781 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:61086750 original size:25 final size:25
Alignment explanation
Indices: 61086712--61086859 Score: 104
Period size: 25 Copynumber: 5.8 Consensus size: 25
61086702 ATAGATATAA
* *
61086712 AAAAAATATGTACATAATATAGTGT
1 AAAAAATATATACATAATATAGTAT
*
61086737 AAAAAATACATACATAATATA--AT
1 AAAAAATATATACATAATATAGTAT
* * *
61086760 -TAAAATATATACATAAGATAACATGTAGA
1 AAAAAATATATACAT-A-AT-ATA-GTA-T
* *
61086789 AAAAAAAATATAAATAATATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * *
61086814 TAAAGATATATACATAAAATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * *
61086839 AATATATATATACGTAATATA
1 AAAAAATATATACATAATATA
61086860 AAATTTAGAA
Statistics
Matches: 93, Mismatches: 22, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
22 12 0.13
23 2 0.02
24 2 0.02
25 57 0.61
26 3 0.03
27 2 0.02
28 3 0.03
29 1 0.01
30 11 0.12
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (25 bp):
AAAAAATATATACATAATATAGTAT
Found at i:61086810 original size:77 final size:82
Alignment explanation
Indices: 61086676--61086863 Score: 199
Period size: 77 Copynumber: 2.3 Consensus size: 82
61086666 AAGTTAAGAT
* * * * * *
61086676 ATATATAATATATACATATGTATAAAATAGATATAAAAAAAATATGTACATAATATAGTGTAAAA
1 ATATAAAATATATACATAAGTATAAAATAGATAGAAAAAAAATATATAAATAATATAGTATAAAA
*
61086741 AATACATACATAATATA
66 AATACATACATAAAATA
* *
61086758 AT-TAAAATATATACATAAG-ATAACAT-G-TAGAAAAAAAA-ATATAAATAATATAGTATTAAA
1 ATATAAAATATATACATAAGTATAAAATAGATAGAAAAAAAATATATAAATAATATAGTATAAAA
* *
61086818 GATATATACATAAAATA
66 AATACATACATAAAATA
* *
61086835 GTATAATATATATATACGTAA-TATAAAAT
1 ATATAA-A-ATATATACATAAGTATAAAAT
61086864 TTAGAATATA
Statistics
Matches: 88, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
77 33 0.38
78 13 0.15
79 2 0.02
80 23 0.26
81 15 0.17
82 2 0.02
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.31
Consensus pattern (82 bp):
ATATAAAATATATACATAAGTATAAAATAGATAGAAAAAAAATATATAAATAATATAGTATAAAA
AATACATACATAAAATA
Found at i:61086918 original size:22 final size:22
Alignment explanation
Indices: 61086853--61086925 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 22
61086843 TATATATACG
* *
61086853 TAATATAAAATTTAG-AATATA
1 TAATATAATATTAAGAAATATA
* *
61086874 CCTAATATATTA-AAAGAATATATA
1 --TAATATAATATTAAGAA-ATATA
61086898 TAATATAATATTAAGAAATATAA
1 TAATATAATATTAAGAAATAT-A
61086921 TAATA
1 TAATA
61086926 ACAAAAAAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
22 15 0.38
23 20 0.50
24 5 0.12
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.36
Consensus pattern (22 bp):
TAATATAATATTAAGAAATATA
Found at i:61086923 original size:23 final size:25
Alignment explanation
Indices: 61086880--61086925 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61086870 TATACCTAAT
61086880 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
61086905 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
61086926 ACAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:61087246 original size:16 final size:16
Alignment explanation
Indices: 61087208--61087246 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
61087198 TCAAAAAAAA
*
61087208 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
61087224 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
61087240 AATAACT
1 AAAAACT
61087247 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:61087441 original size:30 final size:30
Alignment explanation
Indices: 61087405--61087532 Score: 211
Period size: 30 Copynumber: 4.3 Consensus size: 30
61087395 AGGTACAAGT
* *
61087405 GGTGGTGGAGCAAGTGTAGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
61087435 GGTGGTGGAGCAAGTGTGGCTAGTGGAATA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
61087465 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
61087495 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
61087525 GGTGGTGG
1 GGTGGTGG
61087533 CAAAGGCTAG
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 93 1.00
ACGTcount: A:0.20, C:0.06, G:0.49, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:61088377 original size:87 final size:87
Alignment explanation
Indices: 61088227--61088432 Score: 227
Period size: 87 Copynumber: 2.4 Consensus size: 87
61088217 TCCTGAGCTT
* * *
61088227 AACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAAACATTAAAAACAGAAATTGAAAATA
1 AACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAACTAAACATTAAAAACAGAAATTGAAAATA
* *
61088292 GCTCAGCACGTGAGCCAAGGCTC
65 CCTCAGCACGTGACCCAAGGCTC
* * **
61088315 AACTCACTTCTCACAATATGAGTTGATTTTTAAAAC-AAA-ATTTGTAAAACAGATTTTGAAAAT
1 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACTAAACA-TT-AAAAACAGAAATTGAAAAT
* * *
61088378 ACCTCAGTATGTGACCCGAGGCTC
64 ACCTCAGCACGTGACCCAAGGCTC
* * * *
61088402 AACTCACCTCTTGTAATATGAGTTTATTTTT
1 AACTCACTTCTCGCAATATGAGTTGATTTTT
61088433 GCAAAGCATA
Statistics
Matches: 99, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
85 1 0.01
86 5 0.05
87 70 0.71
88 23 0.23
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (87 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACTAAACATTAAAAACAGAAATTGAAAATAC
CTCAGCACGTGACCCAAGGCTC
Found at i:61088599 original size:14 final size:14
Alignment explanation
Indices: 61088576--61088610 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
61088566 CTGATTTTTT
61088576 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
61088590 TTGAATAACAGAAA
1 TTGAAAAACAGAAA
*
61088604 TGGAAAA
1 TTGAAAA
61088611 CACCTCAGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:61088623 original size:88 final size:88
Alignment explanation
Indices: 61088470--61088682 Score: 356
Period size: 88 Copynumber: 2.4 Consensus size: 88
61088460 AAATAAAAAT
* *
61088470 CAATATGAGCTGA-CTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAACGT
1 CAATATGAGCTGATTTTTTTTGAAAAACAGAAATTGAAGAACAGAAATGGAAAACACCTCAACGT
61088534 CTTGAGGTTCAACTCACCTCTCG
66 CTTGAGGTTCAACTCACCTCTCG
* * *
61088557 CAATAAGAGCTGATTTTTTTTGAAAAACAGAAATTGAATAACAGAAATGGAAAACACCTCAGCGT
1 CAATATGAGCTGATTTTTTTTGAAAAACAGAAATTGAAGAACAGAAATGGAAAACACCTCAACGT
61088622 CTTGAGGTTCAACTCACCTCTCG
66 CTTGAGGTTCAACTCACCTCTCG
* *
61088645 CAATATGAGCTGATTATTTTTGAAAGACAGAAATTGAA
1 CAATATGAGCTGATTTTTTTTGAAAAACAGAAATTGAA
61088683 AATACCTCAA
Statistics
Matches: 117, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
87 12 0.10
88 105 0.90
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (88 bp):
CAATATGAGCTGATTTTTTTTGAAAAACAGAAATTGAAGAACAGAAATGGAAAACACCTCAACGT
CTTGAGGTTCAACTCACCTCTCG
Found at i:61088875 original size:75 final size:75
Alignment explanation
Indices: 61088590--61092395 Score: 3348
Period size: 75 Copynumber: 50.3 Consensus size: 75
61088580 AAAACAGAAA
* * * * *
61088590 TTGAATAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61088653 GCTGATTATTT
66 GTTGATT-TTT
* * *
61088664 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61088729 GTTGA--TTT
66 GTTGATTTTT
* * * *
61088737 TTGAAAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCACAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61088800 GTTAATTTTT
66 GTTGATTTTT
61088810 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61088875 GCTGATTTTT
66 GTTGATTTTT
* * * *
61088885 TT-AAAGACAGAAATTGAAAATACCTCAACGTTTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61088949 GTTGA--TTT
66 GTTGATTTTT
* * * * *
61088957 TTCACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61089020 GTTGATTTTT
66 GTTGATTTTT
*
61089030 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61089095 GCTGATTTTT
66 GTTGATTTTT
* * * *
61089105 TTTAAAAGACAGAAATTGAAAATACTTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-ACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATG
61089170 AGTTGA--TTT
65 AGTTGATTTTT
* * * * * *
61089179 TTGACAAACAAAAATTGAAATTACCT-TA-GCGTCTTGAGGTTCAACTCAGCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61089242 GTTGATTTTT
66 GTTGATTTTT
* * *
61089252 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCGCCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61089317 GTTGATTTTT
66 GTTGATTTTT
* *
61089327 TTGAAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* *
61089392 GCTGGTTTTTT
66 G-TTGATTTTT
* * * * * * *
61089403 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATAA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61089468 GTTGATTTTT
66 GTTGATTTTT
* * *
61089478 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61089543 GTTGA--GTT
66 GTTGATTTTT
* * * * * *
61089551 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61089616 GTTGATTTTTT
66 GTTGA-TTTTT
* * ** ** * * * * *
61089627 TTGGAAAAAGAAAATTTGAAAA-A-CAGAATTTGAAAATACCTCAGCGTGT-GAGTCAAGGCTCA
1 TT-GAAAAACAAAAATTGAAAATACCTCAACGTG----T-CTTGAG-GT-TCAACTC-A-CCTC-
* * * * * **
61089689 ACTCACTACTCGCAATATGAGCTGAT
55 TCGCAATA-T-G-AGT-TGA-TTTTT
***** * * ** * ** ** ** *
61089715 TTTTTTGA-AACACA--G-AAAT---TGAA-G-AAC-AGAAATGGAAAACACCTCAGCGTC--T-
1 TTGAAAAACAA-AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTC-TCG-CAATA
* ** *
61089767 TGAGGTTCAACTCACCTC
63 TGA-GTT-GA-T--TTTT
* * *** * ** * ** ** ** * *
61089785 TCGCAATATGAGCTGATATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCT
1 TTG-AA-A--AAC--A-A-AAATTGAA--A-A-TACCTCAACGTGTCTTGA-G-G--TTCA---A
*
61089850 CAACTCACCTCTTGCAATATGAGTTGA--TTT
47 C---TCACCTCTCGCAATATGAGTTGATTTTT
* * * * * *
61089880 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTCAGGTTCAACTCACCTATCGTAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61089943 GTTGATTTTT
66 GTTGATTTTT
*
61089953 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61090018 GCTGA-TTTT
66 GTTGATTTTT
* *
61090027 TT-AAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-ACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATG
*
61090091 AGTTGA--CTT
65 AGTTGATTTTT
* * * * *
61090100 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCAGCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61090163 GTTGATTTTT
66 GTTGATTTTT
* * *
61090173 TTGAAAAACGAAAATTGAAAATACTTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61090238 GCTGATTTTTT
66 GTTGA-TTTTT
* * * * * *
61090249 TTTAAAGACAGAAATTAAAAATACCTCAACGTGTCTGGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61090314 GTT-A-ATTT
66 GTTGATTTTT
* * * * *
61090322 TTGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61090387 GTTGATTTTT
66 GTTGATTTTT
* * *
61090397 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61090462 GTTGA--GTT
66 GTTGATTTTT
* * * ** * *
61090470 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61090535 GTTGATTTTTT
66 GTTGA-TTTTT
* ** * ** ** * *
61090546 TTGGAAAAA-AAAATTTGAAAAATAGAATTTGAAAATACCTCAGGGTGTGAGTCAAGGCTCAACT
1 TT-GAAAAACAAAAATTG-AAAAT---ACCTCAACGTGTCT-TGAG-GT---TCAA--CTC----
* * *
61090610 AACCACTCACAATATGAGCTGATTTTT
50 -ACCTCTCGCAATATGAGTTGATTTTT
* * ** * *
61090637 TTGAAACACAGAAATTGAAGAATAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAA-TCACCT
1 TTGAAAAACAAAAATTGAA-AAT--ACCT------CA--AC-GTGTCTTGAGGTTCAACTCACCT
*
61090701 CTCGCAATATGAGCTGATATTTT
54 CTCGCAATATGAGTTGAT-TTTT
* * * *
61090724 TTGAAAGACAGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61090789 TTTGA--TTT
66 GTTGATTTTT
* * * * *
61090797 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61090860 GTTGATTTTT
66 GTTGATTTTT
* * *
61090870 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTGTTGAGGTTCAACTCACCTTTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61090935 GCTGATTTTT
66 GTTGATTTTT
* * * * *
61090945 TTG-AAGACAGAAATTAAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61091009 GTTGA--TTT
66 GTTGATTTTT
* * * *
61091017 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61091080 GTTGATTTTT
66 GTTGATTTTT
*
61091090 TTGAAAAACAAAAATT-AAAATACCACAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61091154 GCTGATTTTTT
66 GTTGA-TTTTT
* * *
61091165 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61091230 GTTGA--TTT
66 GTTGATTTTT
* * * * * *
61091238 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61091303 GTTGATTTTT
66 GTTGATTTTT
* * *
61091313 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61091378 GTTGA--GTT
66 GTTGATTTTT
* * * * * *
61091386 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61091451 GTTGATTTTTT
66 GTTGA-TTTTT
* * ** * ** ** * *
61091462 TTGGAAAAAGAAAATTTGAAAAATAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACT
1 TT-GAAAAACAAAAATTG-AAAAT---ACCTCAACGTGTCT-TGAG-GT---TCAA--CTC----
* *
61091527 CACCACTCGCAATATGAGCTGATTTTT
50 -ACCTCTCGCAATATGAGTTGATTTTT
* * * * ** *
61091554 TTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACTTCAGCGTCTTGAGGTTCAACTCACCT
1 TTGAAAAACAAAAATT---G---A-AAAT----ACCTCAAC-GTGTCTTGAGGTTCAACTCACCT
*
61091619 CTCGCAATATGAGCTGATTTTTT
54 CTCGCAATATGAGTTGA-TTTTT
* * * * *
61091642 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCGATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61091707 GTTGA--TTT
66 GTTGATTTTT
* * * *
61091715 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61091778 GTTGATTTTT
66 GTTGATTTTT
* * *
61091788 TTGAAAAACAGAAATTGAAAATATCTCAACGTGTCTTGAGGTTCAACTCGCCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61091853 GCTGATTTTT
66 GTTGATTTTT
* *
61091863 TT-AAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-ACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATG
61091927 AGTTGA--TTT
65 AGTTGATTTTT
* * * * *
61091936 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCAGCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61091999 GTTGATTTTT
66 GTTGATTTTT
*
61092009 TTGAAAAACGAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61092074 GCTGATTTTT
66 GTTGATTTTT
* * * * *
61092084 TT-AAAAGACAGAAAGTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGTAATATG
1 TTGAAAA-ACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATG
61092148 AGTTGA--TTT
65 AGTTGATTTTT
* * * * * *
61092157 TTGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61092222 GTTGATTTTT
66 GTTGATTTTT
* * * * * *
61092232 TTGAAAAACAGAAATTGAAAATACTTCAACGTGTCTTAAGGCTCAACTCACTTCTTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61092297 GTTGA--GTT
66 GTTGATTTTT
* * * * *
61092305 TTG----ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61092366 GTTGATTTTT
66 GTTGATTTTT
* * *
61092376 TT-AGAAACATAAATTAAAAA
1 TTGAAAAACAAAAATTGAAAA
61092396 AAACGAAAAT
Statistics
Matches: 3054, Mismatches: 493, Indels: 370
0.78 0.13 0.09
Matches are distributed among these distances:
67 2 0.00
68 3 0.00
69 57 0.02
70 1 0.00
71 310 0.10
72 32 0.01
73 803 0.26
74 295 0.10
75 819 0.27
76 354 0.12
77 44 0.01
78 6 0.00
79 2 0.00
80 12 0.00
81 19 0.01
82 7 0.00
83 9 0.00
84 11 0.00
85 8 0.00
86 30 0.01
87 54 0.02
88 35 0.01
89 1 0.00
90 11 0.00
91 31 0.01
92 27 0.01
93 19 0.01
94 10 0.00
95 6 0.00
96 2 0.00
97 8 0.00
98 6 0.00
99 5 0.00
100 2 0.00
101 10 0.00
102 3 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (75 bp):
TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:61089718 original size:91 final size:87
Alignment explanation
Indices: 61089550--61089827 Score: 303
Period size: 91 Copynumber: 3.1 Consensus size: 87
61089540 TGAGTTGAGT
* * *
61089550 TTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATG
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--TGAGGCTCAACTCAC-TCTCGCAATATG
*
61089615 AGTTGATTTTTTTTGGAAA-A-AGAAAA
63 AGCTGA-TTTTTTT-GAAACACAG-AAA
* *
61089641 TTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACTACTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGT---T-GAGGCTCAACTCACT-CTCGCAATA
61089706 TGAGCTGATTTTTTTGAAACACAGAAA
61 TGAGCTGATTTTTTTGAAACACAGAAA
* * * * *
61089733 -TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTTGAGGCTCAACTCA-CTCTCGCAATATGAG
*
61089797 CTGATATTTTTTGAAAGACAGAAA
65 CTGAT-TTTTTTGAAACACAGAAA
61089821 -TTGAAAA
1 TTTGAAAA
61089828 TACCTCAACG
Statistics
Matches: 163, Mismatches: 17, Indels: 17
0.83 0.09 0.09
Matches are distributed among these distances:
87 29 0.18
88 26 0.16
91 64 0.39
92 13 0.08
93 31 0.19
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (87 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTTGAGGCTCAACTCACTCTCGCAATATGAGC
TGATTTTTTTGAAACACAGAAA
Found at i:61089905 original size:73 final size:74
Alignment explanation
Indices: 61089733--61092395 Score: 2616
Period size: 73 Copynumber: 35.3 Consensus size: 74
61089723 AACACAGAAA
* * * * * *
61089733 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
61089796 GCTGATATTTT
66 GTTG--ATTTT
* * *
61089807 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61089872 GTTGA-TTT
66 GTTGATTTT
* * * * * * *
61089880 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTCAGGTTCAACTCACCTATCGTAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61089943 GTTGATTTTT
66 GTTGA-TTTT
* *
61089953 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
61090018 GCTGATTTT
66 GTTGATTTT
*
61090027 TT-AAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-ACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
61090091 AGTTGA-CTT
65 AGTTGATTTT
* * * * * *
61090100 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCAGCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61090163 GTTGATTTTT
66 GTTGA-TTTT
* * * *
61090173 TTGAAAAACGAAAATTGAAAATACTTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
61090238 GCTGATTTTTT
66 GTTGA--TTTT
* * * * *
61090249 TTTAAAGACAGAAATTAAAAATACCTCAACGTGTCTGGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
61090314 GTT-AATTT
66 GTTGATTTT
* * * *
61090322 TTGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61090387 GTTGATTTTT
66 GTTGA-TTTT
* *
61090397 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
61090462 GTTGA-GTT
66 GTTGATTTT
* * * ** *
61090470 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61090535 GTTGATTTTTT
66 GTTGA--TTTT
* ** * * **
61090546 TTGGAAAAA-AAAATTTGAAAAATAGAATTTGAAAATACCTCAGGGTGTGA-G-TCAAGGCTCAA
1 TT-GAAAAACAAAAATTG-AAAAT---ACCT---CA-ACGT--GTCT-TGAGGCTCAA--CTC--
* * *
61090608 CTAACCACTCACAATATGAGCTGATTTTT
50 ---ACCTCTCGCAATATGAGTTGA-TTTT
* * ** * * *
61090637 TTGAAACACAGAAATTGAAGAATAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAA-TCACCT
1 TTGAAAAACAAAAATTGAA-AAT--ACCT------CA--AC-GTGTCTTGAGGCTCAACTCACCT
*
61090701 CTCGCAATATGAGCTGATATTTT
54 CTCGCAATATGAGTTG--ATTTT
* * *
61090724 TTGAAAGACAGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
61090789 TTTGA-TTT
66 GTTGATTTT
* * * * * *
61090797 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61090860 GTTGATTTTT
66 GTTGA-TTTT
* * * *
61090870 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTGTTGAGGTTCAACTCACCTTTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
61090935 GCTGATTTTT
66 GTTGA-TTTT
* * * *
61090945 TTG-AAGACAGAAATTAAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61091009 GTTGA-TTT
66 GTTGATTTT
* * * * *
61091017 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61091080 GTTGATTTTT
66 GTTGA-TTTT
* *
61091090 TTGAAAAACAAAAATT-AAAATACCACAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
61091154 GCTGATTTTTT
66 GTTGA--TTTT
* *
61091165 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61091230 GTTGA-TTT
66 GTTGATTTT
* * * * *
61091238 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61091303 GTTGATTTTT
66 GTTGA-TTTT
* *
61091313 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
61091378 GTTGA-GTT
66 GTTGATTTT
* * * * *
61091386 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61091451 GTTGATTTTTT
66 GTTGA--TTTT
* * ** * *
61091462 TTGGAAAAAGAAAATTTGAAAAATAGAATTTGAAAATACCTCAG-CGTGTGA-G-TCAAGGCTCA
1 TT-GAAAAACAAAAATTG-AAAAT---ACCT---CA-ACGT--GTC-T-TGAGGCTCAA--CTC-
* *
61091524 ACTCACCACTCGCAATATGAGCTGATTTTT
50 ----ACCTCTCGCAATATGAGTTGA-TTTT
* * * * ** * *
61091554 TTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACTTCAGCGTCTTGAGGTTCAACTCACCT
1 TTGAAAAACAAAAATT---G---A-AAAT----ACCTCAAC-GTGTCTTGAGGCTCAACTCACCT
*
61091619 CTCGCAATATGAGCTGATTTTTT
54 CTCGCAATATGAGTTGA--TTTT
* * * *
61091642 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCGATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61091707 GTTGA-TTT
66 GTTGATTTT
* * * * *
61091715 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61091778 GTTGATTTTT
66 GTTGA-TTTT
* * * *
61091788 TTGAAAAACAGAAATTGAAAATATCTCAACGTGTCTTGAGGTTCAACTCGCCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
61091853 GCTGATTTT
66 GTTGATTTT
* *
61091862 TTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-ACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
61091927 AGTTGA-TTT
65 AGTTGATTTT
* * * * * *
61091936 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCAGCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61091999 GTTGATTTTT
66 GTTGA-TTTT
* *
61092009 TTGAAAAACGAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
61092074 GCTGATTTT
66 GTTGATTTT
* * * * *
61092083 TTTAAAAGACAGAAAGTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGTAATATG
1 TTGAAAA-ACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
61092148 AGTTGA-TTT
65 AGTTGATTTT
* * * * *
61092157 TTGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61092222 GTTGATTTTT
66 GTTGA-TTTT
* * * * *
61092232 TTGAAAAACAGAAATTGAAAATACTTCAACGTGTCTTAAGGCTCAACTCACTTCTTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
61092297 GTTGA-GTT
66 GTTGATTTT
* * * *
61092305 TTG----ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
61092366 GTTGATTTT
66 GTTGATTTT
* * * *
61092375 TTTAGAAACATAAATTAAAAA
1 TTGAAAAACAAAAATTGAAAA
61092396 AAACGAAAAT
Statistics
Matches: 2167, Mismatches: 308, Indels: 228
0.80 0.11 0.08
Matches are distributed among these distances:
69 56 0.03
70 4 0.00
71 212 0.10
72 20 0.01
73 608 0.28
74 242 0.11
75 534 0.25
76 219 0.10
77 25 0.01
78 5 0.00
80 2 0.00
81 6 0.00
82 1 0.00
83 1 0.00
84 5 0.00
85 7 0.00
86 28 0.01
87 49 0.02
88 27 0.01
90 9 0.00
91 28 0.01
92 33 0.02
93 27 0.01
94 12 0.01
96 1 0.00
97 4 0.00
98 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (74 bp):
TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:61090652 original size:92 final size:86
Alignment explanation
Indices: 61090508--61090744 Score: 244
Period size: 91 Copynumber: 2.7 Consensus size: 86
61090498 GCGTGTCCCG
* * *
61090508 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAA-AAAAATTTGAAAAATAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTT-GAAAACAGAAA-TTGAAAAATAGA
* * * * *
61090572 ATTTGAAAATACCTCAGGGTGTGAGTCA
63 AATGGAAAACACCTCAGCGTCT---T-A
* * * *
61090600 AGGCTCAACTAACCACTCACAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAATAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA-ACAGAAATTGAAAAATAGAAA
*
61090665 TGGAAAACACCTCAGCGTCTTG
65 TGGAAAACACCTCAGCGTCTTA
*
61090687 AGGTTCAA-TCACCTCTCGCAATATGAGCTGATATTTTTTGAAAGACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGAT-TTTTTTGAAA-ACAGAAATTGAAAA
61090745 TACCTTAACG
Statistics
Matches: 123, Mismatches: 19, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
86 21 0.17
87 30 0.24
88 1 0.01
90 4 0.03
91 36 0.29
92 31 0.25
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAACAGAAATTGAAAAATAGAAAT
GGAAAACACCTCAGCGTCTTA
Found at i:61091268 original size:221 final size:221
Alignment explanation
Indices: 61088590--61092375 Score: 4831
Period size: 221 Copynumber: 16.7 Consensus size: 221
61088580 AAAACAGAAA
* * * *
61088590 TTGAATAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61088653 GCTGATTATTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
66 GCTGATT-TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
61088718 TCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACT
130 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACT
* *
61088783 CACCTATCACAATATGAGTTAATTTTT
195 CACCTATCGCAATATGAGTTGATTTTT
*
61088810 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61088875 GCTGATTTTTTT-AAAGACAGAAATTGAAAATACCTCAACGTTTCTTGAGGCTCAACTCACCTCT
66 GCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
61088939 CGCAATATGAGTTGATTTTTCACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
131 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
61089004 ACCTATCGCAATATGAGTTGATTTTT
196 ACCTATCGCAATATGAGTTGATTTTT
61089030 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* *
61089095 GCTGATTTTTTTTAAAAGACAGAAATTGAAAATACTTCAACGTGTCTTGAGGCTCAACTCACCTC
66 GCTGA-TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
61089160 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTTAGCGTCTTGAGGTTCAACT
130 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACT
*
61089225 CAGCTATCGCAATATGAGTTGATTTTT
195 CACCTATCGCAATATGAGTTGATTTTT
* *
61089252 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCGCCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * *
61089317 GTTGATTTTTTTGAAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCT
66 GCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
** * * * *
61089382 CGCAATATGAGCTGGTTTTTTTTGA-AAGACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCT
131 CGCAATATGAG-T--TGATTTTTGACAA-ACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTT
*
61089446 CAACTCACCTATCGCAATATAAGTTGATTTTT
190 CAACTCACCTATCGCAATATGAGTTGATTTTT
* *
61089478 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * * * * *
61089543 GTTGA--GTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTC
66 GCTGATTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* * *
61089605 TCGCAATATGAGTTGATTTTTTTTGGAAAAAGAAAATTTGAAAAACAGAATTTGAAAATACCTCA
130 TCGCAATATGAGTTGA---TTTTT-------G-ACA----AACAA-A-AA-TTGAAATTACCTCA
* *
61089670 GCGT-GTGA-G-TCAAGGCTCAACTCACTACTCGCAATATGAGCTGATTTTT
177 GCGTCTTGAGGTTCAA--CTC-A--C-CTA-TCGCAATATGAGTTGATTTTT
* *
61089719 TTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCAC
1 TTGAAAAACAGAAATT---G---A-AAAT-------ACCTCAACGTGTCTTGAGGTTCAACTCAC
61089782 CTCTCGCAATATGAGCTGATATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAG
52 CTCTCGCAATATGAGCTGAT-TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAG
*
61089847 GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGT
116 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGT
* *
61089912 CTTCAGGTTCAACTCACCTATCGTAATATGAGTTGATTTTT
181 CTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTT
* *
61089953 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61090018 GCTGA-TTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
66 GCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
61090082 CGCAATATGAGTTGACTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
131 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
*
61090147 AGCTATCGCAATATGAGTTGATTTTT
196 ACCTATCGCAATATGAGTTGATTTTT
* *
61090173 TTGAAAAAC-GAAAATTGAAAATACTTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATG
1 TTGAAAAACAG-AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATG
* * *
61090237 AGCTGATTTTTTTTTAAAGACAGAAATTAAAAATACCTCAACGTGTCTGGAGGCTCAACTCACCT
65 AGCTGA-TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
* * * *
61090302 CTCGCAATATGAGTTAATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCA
129 CTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCA
61090367 ACTCACCTATCGCAATATGAGTTGATTTTT
192 ACTCACCTATCGCAATATGAGTTGATTTTT
* *
61090397 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * * * ** *
61090462 GTTGA--GTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACTTC
66 GCTGATTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* * *
61090524 TCGCAATATGAGTTGATTTTTTTTGGAAAAAAAAATTTGAAAAATAGAATTTGAAAATACCTCAG
130 TCGCAATATGAGTTGA---TTTTT-G------ACA----AACAA-A-AA-TTGAAATTACCTCAG
* * * * *
61090589 GGT-GTGA-G-TCAAGGCTCAACTAACCACTCACAATATGAGCTGATTTTT
178 CGTCTTGAGGTTCAA--CTC-AC---CTA-TCGCAATATGAGTTGATTTTT
* ** * *
61090637 TTGAAACACAGAAATTGAAGAATAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAA-TCACCT
1 TTGAAAAACAGAAATTGAA-AAT--ACCT------CA--AC-GTGTCTTGAGGTTCAACTCACCT
*
61090701 CTCGCAATATGAGCTGATATTTTTTGAAAGACAGAAATTGAAAATACCTTAACGTGTCTTGAGGC
54 CTCGCAATATGAGCTGAT-TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGC
*
61090766 TCAACTCACCTCTCGCAATATGATTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCT
118 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCT
*
61090831 TGAGGTTCAACTCACCTATTGCAATATGAGTTGATTTTT
183 TGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTT
* *
61090870 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTGTTGAGGTTCAACTCACCTTTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* *
61090935 GCTGATTTTTTTG-AAGACAGAAATTAAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCT
66 GCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
61090999 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
131 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
61091064 ACCTATCGCAATATGAGTTGATTTTT
196 ACCTATCGCAATATGAGTTGATTTTT
* *
61091090 TTGAAAAACAAAAATT-AAAATACCACAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
61091154 GCTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
66 GCTGA-TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
61091219 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
130 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAA
61091284 CTCACCTATCGCAATATGAGTTGATTTTT
193 CTCACCTATCGCAATATGAGTTGATTTTT
* *
61091313 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * * * * *
61091378 GTTGA--GTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTC
66 GCTGATTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* * *
61091440 TCGCAATATGAGTTGATTTTTTTTGGAAAAAGAAAATTTGAAAAATAGAATTTGAAAATACCTCA
130 TCGCAATATGAGTTGA---TTTTT-------G-ACA----AACAA-A-AA-TTGAAATTACCTCA
* * *
61091505 GCGT-GTGA-G-TCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
177 GCGTCTTGAGGTTCAA--CTC-A--C-CTA-TCGCAATATGAGTTGATTTTT
* *
61091554 TTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACTTC-A-GCGTCTTGAGGTTCAACTCAC
1 TTGAAAAACAGAAATT---G---A-AAAT-----AC-C-TCAACGTGTCTTGAGGTTCAACTCAC
61091617 CTCTCGCAATATGAGCTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAG
52 CTCTCGCAATATGAGCTGA-TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAG
* *
61091682 GCTCAACTCACCTCTTGCGATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGT
116 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGT
61091747 CTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTT
181 CTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTT
* *
61091788 TTGAAAAACAGAAATTGAAAATATCTCAACGTGTCTTGAGGTTCAACTCGCCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61091853 GCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
66 GCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
61091918 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
131 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
*
61091983 AGCTATCGCAATATGAGTTGATTTTT
196 ACCTATCGCAATATGAGTTGATTTTT
61092009 TTGAAAAAC-GAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAG-AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATG
* * *
61092073 AGCTGATTTTTTTAAAAGACAGAAAGTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTC
65 AGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* * * *
61092138 TCGTAATATGAGTTGATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAA
130 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAA
*
61092203 CTCACCTATTGCAATATGAGTTGATTTTT
193 CTCACCTATCGCAATATGAGTTGATTTTT
* * * * *
61092232 TTGAAAAACAGAAATTGAAAATACTTCAACGTGTCTTAAGGCTCAACTCACTTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * * * * *
61092297 GTTGA--GTTTT----GACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCT
66 GCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
61092356 CGCAATATGAGTTGATTTTT
131 CGCAATATGAGTTGATTTTT
61092376 TTAGAAACAT
Statistics
Matches: 3166, Mismatches: 231, Indels: 341
0.85 0.06 0.09
Matches are distributed among these distances:
217 61 0.02
219 50 0.02
220 607 0.19
221 646 0.20
222 453 0.14
223 160 0.05
224 256 0.08
225 4 0.00
226 105 0.03
227 8 0.00
228 2 0.00
230 2 0.00
231 6 0.00
232 6 0.00
233 41 0.01
234 79 0.02
235 17 0.01
236 25 0.01
237 29 0.01
238 63 0.02
239 52 0.02
240 54 0.02
241 88 0.03
243 2 0.00
244 4 0.00
245 4 0.00
246 2 0.00
247 2 0.00
248 8 0.00
249 2 0.00
250 1 0.00
251 27 0.01
252 14 0.00
253 86 0.03
254 64 0.02
255 11 0.00
256 125 0.04
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (221 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
GCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
ACCTATCGCAATATGAGTTGATTTTT
Found at i:61091636 original size:87 final size:88
Alignment explanation
Indices: 61091408--61091662 Score: 282
Period size: 91 Copynumber: 2.8 Consensus size: 88
61091398 AATTGAAATT
* * * *
61091408 ACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAA-AG
1 ACCTCAGCGTCT-GTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTT-GAAAACAG
* * * *
61091472 AAAATTTGAAAAATAGAATTTGAAAAT
64 -AAA-TTGAAAAACAGAAATGGAAAAC
* * *
61091499 ACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGA-TTTTTTTGAAACAC
1 ACCTCAGCGTCT--GT-GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTGAAA-AC
*
61091563 AGAAATTGAAGAACAGAAATGGAAAAC
62 AGAAATTGAAAAACAGAAATGGAAAAC
* *
61091590 ACTTCAGCGTCT-TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTGAAAGACAGA
1 ACCTCAGCGTCTGTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTGAAA-ACAGA
61091654 AATTGAAAA
65 AATTGAAAA
61091663 TACCTCAACG
Statistics
Matches: 141, Mismatches: 18, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
87 30 0.21
88 25 0.18
91 43 0.30
92 12 0.09
93 31 0.22
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (88 bp):
ACCTCAGCGTCTGTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTGAAAACAGAA
ATTGAAAAACAGAAATGGAAAAC
Found at i:61092173 original size:919 final size:919
Alignment explanation
Indices: 61088810--61092424 Score: 6380
Period size: 919 Copynumber: 3.9 Consensus size: 919
61088800 GTTAATTTTT
* * * * *
61088810 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
61088875 GCTGAT-TTTTTT-AAAGACAGAAATTGAAAATACCTCAACGTTTCTTGAGGCTCAACTCACCTC
64 GCTGATATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
61088938 TCGCAATATGAGTTGATTTTTCACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACT
129 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACT
61089003 CACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTG
194 CACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTG
*
61089068 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTAAAAGACAGAAATTGAAAATACTTC
259 AGGTTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTTAAAAGACAGAAATTGAAAATACCTC
61089133 AACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAA
323 AACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAA
*
61089198 ATTACCTTAGCGTCTTGAGGTTCAACTCAGCTATCGCAATATGAGTTGATTTTTTTGAAAAAC-A
388 ATTACCTCAGCGTCTTGAGGTTCAACTCAGCTATCGCAATATGAGTTGATTTTTTTGAAAAACGA
* *
61089262 GAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCGCCTATCGCAATATGAGTTGATTTTT
453 -AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGAGCTGATTTTT
* * *
61089327 TTGAAAA-ATAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATG
517 TTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
** *
61089391 AGCTGGTTTTTTTTGA-AAGACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
582 AG-T--TGATTTTTGACAA-ACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
*
61089455 TATCGCAATATAAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGC
643 TATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGC
61089520 TCAACTCACCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGT
708 TCAACTCACCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGT
61089585 CCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAAGAAAATTTGAAAAA
773 CCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAA-AAAATTTGAAAAA
* *
61089650 CAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACTACTCGCAATATGAGCTGAT
837 TAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGAT
61089715 TTTTTTGAAACACAGAAA
902 TTTTTTGAAACACAGAAA
61089733 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
*
61089798 TGATATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTT
66 TGATATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
*
61089863 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTCAGGTTCAACTCA
131 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
* *
61089928 CCTATCGTAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAG
196 CCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAG
*
61089993 GTTCAACTCACTTCTCGCAATATGAGCTGA-TTTTTTAAAAGACAGAAATTGAAAATACCTCAAC
261 GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAAC
*
61090057 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTGACAAACAAAAATTGAAATT
326 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
61090122 ACCTCAGCGTCTTGAGGTTCAACTCAGCTATCGCAATATGAGTTGATTTTTTTGAAAAACGAAAA
391 ACCTCAGCGTCTTGAGGTTCAACTCAGCTATCGCAATATGAGTTGATTTTTTTGAAAAACGAAAA
* *
61090187 TTGAAAATACTTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGAGCTGATTTTTTTTT
456 TTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGAGCTGATTTTTTTTA
* *
61090252 AAAGACAGAAATTAAAAATACCTCAACGTGTCTGGAGGCTCAACTCACCTCTCGCAATATGAGTT
521 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
61090317 AATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAA
586 GATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAA
61090382 TATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
651 TATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
*
61090447 CCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGC
716 CCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGC
61090512 TCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAAAAAATTTGAAAAATAGAATTTG
781 TCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAAAAAATTTGAAAAATAGAATTTG
* * *
61090577 AAAATACCTCAGGGTGTGAGTCAAGGCTCAACTAACCACTCACAATATGAGCTGATTTTTTTGAA
846 AAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAA
61090642 ACACAGAAA
911 ACACAGAAA
*
61090651 TTGAAGAATAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAA-TCACCTCTCGCAATATGAGC
1 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
*
61090715 TGATATTTTTTGAAAGACAGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCACCTCTC
66 TGATATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
*
61090780 GCAATATGATTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
131 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
* *
61090845 CCTATTGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTGTTGAG
196 CCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAG
* * *
61090910 GTTCAACTCACCTTTCGCAATATGAGCTGATTTTTTT-GAAGACAGAAATTAAAAATACCTCAAC
261 GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAAC
*
61090974 ATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
326 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
* *
61091039 ACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAAAAA
391 ACCTCAGCGTCTTGAGGTTCAACTCAGCTATCGCAATATGAGTTGATTTTTTTGAAAAACGAAAA
* * *
61091104 TT-AAAATACCACAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTG
456 TTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGAGCTGATTTTTTTTA
61091168 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
521 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
61091233 GATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAA
586 GATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAA
61091298 TATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
651 TATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
61091363 CCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGC
716 CCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGC
61091428 TCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAAGAAAATTTGAAAAATAGAATTT
781 TCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAA-AAAATTTGAAAAATAGAATTT
61091493 GAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGA
845 GAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGA
61091558 AACACAGAAA
910 AACACAGAAA
*
61091568 TTGAAGAACAGAAATGGAAAACACTTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
* *
61091633 TGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTT
66 TGATATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
*
61091698 GCGATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
131 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
*
61091763 CCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATATCTCAACGTGTCTTGAG
196 CCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAG
*
61091828 GTTCAACTCGCCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAAC
261 GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAAC
61091893 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
326 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
61091958 ACCTCAGCGTCTTGAGGTTCAACTCAGCTATCGCAATATGAGTTGATTTTTTTGAAAAACGAAAA
391 ACCTCAGCGTCTTGAGGTTCAACTCAGCTATCGCAATATGAGTTGATTTTTTTGAAAAACGAAAA
*
61092023 TTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTTA
456 TTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGAGCTGATTTTTTTTA
* * *
61092087 AAAGACAGAAAGTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGTAATATGAGTT
521 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
61092152 GATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATTGCAA
586 GATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAA
* *
61092217 TATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACTTCAACGTGTCTTAAGGCTCAACTCA
651 TATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
*
61092282 CTTCTTGCAATATGAGTTGAGTTTTG----ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGC
716 CCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGC
* * * * * *
61092343 TCAACTCACTTCTCGCAATATGAGTTGA-TTTTTTTAGAAACATAAA-TTAAAAAAAACGAAAAT
781 TCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAAAAAATTTGAAAAATA-G-AATT
61092406 TGAAAATACCTCAGCGTGT
844 TGAAAATACCTCAGCGTGT
61092425 CCTGAGGCTT
Statistics
Matches: 2584, Mismatches: 96, Indels: 33
0.95 0.04 0.01
Matches are distributed among these distances:
912 8 0.00
913 4 0.00
914 34 0.01
915 63 0.02
916 356 0.14
917 523 0.20
918 382 0.15
919 605 0.23
920 54 0.02
921 263 0.10
922 63 0.02
923 229 0.09
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (919 bp):
TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
TGATATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
CCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAG
GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAAC
GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
ACCTCAGCGTCTTGAGGTTCAACTCAGCTATCGCAATATGAGTTGATTTTTTTGAAAAACGAAAA
TTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGAGCTGATTTTTTTTA
AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAA
TATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGC
TCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAAAAAATTTGAAAAATAGAATTTG
AAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAA
ACACAGAAA
Found at i:61092601 original size:14 final size:13
Alignment explanation
Indices: 61092566--61092610 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
61092556 TTGATTTTTG
*
61092566 AAAAATAGAAATT
1 AAAAACAGAAATT
*
61092579 AAAAGCAGAAATT
1 AAAAACAGAAATT
61092592 GAAAAACAGAAATT
1 -AAAAACAGAAATT
61092606 AAAAA
1 AAAAA
61092611 TACCTCGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:61092631 original size:100 final size:101
Alignment explanation
Indices: 61092394--61092754 Score: 387
Period size: 100 Copynumber: 3.7 Consensus size: 101
61092384 ATAAATTAAA
* * **
61092394 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTTAACTCATTTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
61092458 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
*
61092493 AAAAAAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
61092558 GATTTTTGAAAAATAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * * * *
61092593 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGGAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
61092658 GATTTTTGAAAAGCATAAATT-----G-----A---
66 GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * *
61092681 AAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
61092746 TTGATTTTT
64 TTGATTTTT
61092755 TTGAAAGATA
Statistics
Matches: 229, Mismatches: 28, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
88 24 0.10
90 40 0.17
91 1 0.00
96 1 0.00
99 60 0.26
100 89 0.39
101 14 0.06
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.25
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
Found at i:61092748 original size:90 final size:87
Alignment explanation
Indices: 61092579--61092754 Score: 244
Period size: 90 Copynumber: 2.0 Consensus size: 87
61092569 AATAGAAATT
* * *
61092579 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCTC
*
61092644 TCGGAATATGAGTTGATTTTTG
66 TCGCAATATGAGTTGATTTTTG
* * * * *
61092666 AAAAGCATAAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCAC
1 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACCTC-G-GCGTGACCCGAGGCCCAACTCAC
61092731 CTCTCGCAATATGAGTTGATTTTT
63 CTCTCGCAATATGAGTTGATTTTT
61092755 TTGAAAGATA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
87 13 0.17
88 22 0.29
89 1 0.01
90 41 0.53
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (87 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCTC
TCGCAATATGAGTTGATTTTTG
Found at i:61093652 original size:16 final size:16
Alignment explanation
Indices: 61093630--61093666 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
61093620 TCCCTCTCTC
61093630 TTTTTCTTTT-TCTTT
1 TTTTTCTTTTCTCTTT
61093645 TATTTTCTTTTCTCTTT
1 T-TTTTCTTTTCTCTTT
61093662 TTTTT
1 TTTTT
61093667 TAAGATGCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 1 0.05
16 13 0.65
17 6 0.30
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTCTTTTCTCTTT
Found at i:61093667 original size:17 final size:16
Alignment explanation
Indices: 61093630--61093667 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
61093620 TCCCTCTCTC
61093630 TTTTTCTTTTTCTTTT
1 TTTTTCTTTTTCTTTT
*
61093646 ATTTTCTTTTCTCTTTT
1 TTTTTCTTTT-TCTTTT
61093663 TTTTT
1 TTTTT
61093668 AAGATGCCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTCTTTTTCTTTT
Found at i:61100592 original size:21 final size:21
Alignment explanation
Indices: 61100566--61100648 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
61100556 TGATCAGTAT
*
61100566 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
61100587 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* * *
61100608 ACGACACACGAGGTGCTTGAAA
1 ACGACACACAAAGTGCCT-AAA
*
61100630 TACGACACATAAAGTGCCT
1 -ACGACACACAAAGTGCCT
61100649 GATCGATAAA
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
21 33 0.69
22 1 0.02
23 14 0.29
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:61100616 original size:23 final size:22
Alignment explanation
Indices: 61100564--61100638 Score: 82
Period size: 21 Copynumber: 3.5 Consensus size: 22
61100554 CCTGATCAGT
** *
61100564 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
*
61100585 AAACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
*
61100606 ATACGACACACGAGGTGCTTGAA
1 ATACGACACACGAGGTGCCTG-A
61100629 ATACGACACA
1 ATACGACACA
61100639 TAAAGTGCCT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 35 0.78
23 10 0.22
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.15
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:61102112 original size:16 final size:17
Alignment explanation
Indices: 61102077--61102112 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
61102067 CCTAATTCTC
61102077 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
61102093 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
61102108 CCTTC
1 CCTTC
61102113 CCCTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:61103858 original size:12 final size:13
Alignment explanation
Indices: 61103830--61103862 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
61103820 TTATTTCTTT
61103830 TTCTCCATCTACC
1 TTCTCCATCTACC
*
61103843 TTCTCC-TCTTCC
1 TTCTCCATCTACC
61103855 TTCTCCAT
1 TTCTCCAT
61103863 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:61104982 original size:27 final size:28
Alignment explanation
Indices: 61104926--61104989 Score: 103
Period size: 27 Copynumber: 2.3 Consensus size: 28
61104916 ATTTACTAGA
*
61104926 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
61104954 ATACCCCTATGT-TGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
61104981 ATACCCCTA
1 ATACCCCTA
61104990 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 22 0.65
28 12 0.35
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:61105136 original size:28 final size:27
Alignment explanation
Indices: 61105095--61105182 Score: 110
Period size: 25 Copynumber: 3.2 Consensus size: 27
61105085 AGGAAGCGTC
61105095 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
*
61105123 CTGGTGGCCCTGCCAC--ATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
61105148 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
61105177 CTGGTG
1 CTGGTG
61105183 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
25 23 0.43
26 1 0.02
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:61105193 original size:29 final size:28
Alignment explanation
Indices: 61105105--61105193 Score: 94
Period size: 25 Copynumber: 3.2 Consensus size: 28
61105095 CTGGTGGCTA
* * *
61105105 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
61105133 TGCCAC---ATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
61105158 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
61105187 TGTCACA
1 TGCCACA
61105194 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
25 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:61106291 original size:11 final size:10
Alignment explanation
Indices: 61106263--61106296 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
61106253 AGCCTGTAAG
61106263 TATTCTGAAT
1 TATTCTGAAT
*
61106273 TTTTCTGAAT
1 TATTCTGAAT
61106283 ATATTCTGAAT
1 -TATTCTGAAT
61106294 TAT
1 TAT
61106297 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:61111684 original size:12 final size:13
Alignment explanation
Indices: 61111656--61111688 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
61111646 TTATTTCTTT
61111656 TTCTCCATCTACC
1 TTCTCCATCTACC
*
61111669 TTCTCC-TCTTCC
1 TTCTCCATCTACC
61111681 TTCTCCAT
1 TTCTCCAT
61111689 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:61112783 original size:28 final size:28
Alignment explanation
Indices: 61112751--61112814 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
61112741 ATTTACTAGA
* *
61112751 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGCATGCAAAATGACCATT
* *
61112779 ATACCCCTATGCGTGCAAAATGACCTTT
1 ATACCCCTATGCATGCAAAATGACCATT
61112807 ATACCCCT
1 ATACCCCT
61112815 GGGGTTAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.30, G:0.09, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGCATGCAAAATGACCATT
Found at i:61113022 original size:29 final size:28
Alignment explanation
Indices: 61112921--61113011 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
61112911 AGGAAGCGTC
61112921 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
61112949 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
61112977 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
61113006 CTGGTG
1 CTGGTG
61113012 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:61113036 original size:56 final size:55
Alignment explanation
Indices: 61112921--61113036 Score: 137
Period size: 56 Copynumber: 2.1 Consensus size: 55
61112911 AGGAAGCGTC
* *
61112921 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCAC-AATTATCTGTT
* * *
61112977 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAATTATCTGT-T
61113033 CTGG
1 CTGG
61113037 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
55 9 0.17
56 29 0.56
57 14 0.27
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:61123218 original size:3 final size:3
Alignment explanation
Indices: 61123212--61123411 Score: 179
Period size: 3 Copynumber: 64.0 Consensus size: 3
61123202 ATAATGTGAC
* * * *
61123212 AAT AAT AAT AAC AAT AGT AAT AAAT AAAT AAAT AAAT AAT GAT AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT -AAT -AAT -AAT -AAT AAT AAT AAT AAT
* * * * * *
61123261 AAT AAT AGT AA- AGAA AAT AAAT ATAG AATT AAT AAT GAT ACT AACG
1 AAT AAT AAT AAT A-AT AAT -AAT A-AT AA-T AAT AAT AAT AAT AA-T
* * *
61123307 AAT -AT AAGT AAT AAT AGT AAA AAT AAA AAT AAT AAT AAT AAT AAT
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
61123352 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
61123400 AAT AAT AAT AAT
1 AAT AAT AAT AAT
61123412 GCTAAATTAA
Statistics
Matches: 163, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
2 3 0.02
3 132 0.81
4 28 0.17
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (3 bp):
AAT
Done.