Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 208 of 292
Found at i:61653117 original size:26 final size:26
Alignment explanation
Indices: 61652622--61653109 Score: 282
Period size: 27 Copynumber: 18.3 Consensus size: 26
61652612 TATCCTACAG
*
61652622 GGGTATTTCGGT-ATTTCTACCCAA-CAA
1 GGGTATTTCGGTAATTT-TA--CAATCGA
** *
61652649 GGGTATTTCGGT-ATTTCTACCCTACAA
1 GGGTATTTCGGTAATTT-TACAAT-CGA
* * *
61652676 GGGTATTTCGGTAATTCTACCTATAG-
1 GGGTATTTCGGTAATTTTA-CAATCGA
* *
61652702 GGGTATTTCGGTAATTCTAC-CTAC-A
1 GGGTATTTCGGTAATTTTACAAT-CGA
** **
61652727 GGGGTATTTCGGTAATTCAACCCTAC-A
1 -GGGTATTTCGGTAATTTTACAAT-CGA
**
61652754 GGGGTATTTCAATAATTTTGTA-AATCGA
1 -GGGTATTTCGGTAA-TTT-TACAATCGA
***
61652782 GGGTAAAACGGTAATTCTATA-AATCG-
1 GGGTATTTCGGTAATT-T-TACAATCGA
*
61652808 GGGTACTTT-GGTAATTTTACAAGGCGA
1 GGGTA-TTTCGGTAATTTTACAA-TCGA
* * **
61652835 GGGTATTTCAGTAATATTACAAATTAA
1 GGGTATTTCGGTAATTTTAC-AATCGA
** ** *
61652862 GGGTATTTTAGTAATTTTGTAAACAGA
1 GGGTATTTCGGTAATTTTACAATC-GA
** *
61652889 GGGTATTTCAATAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTAC-AATCGA
* *
61652916 TGGTATTTCAGTAATTTTACAATCGA
1 GGGTATTTCGGTAATTTTACAATCGA
*
61652942 CGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTAC-AATCGA
*
61652969 GGGTATTTCAGTAATTTTACAATCGA
1 GGGTATTTCGGTAATTTTACAATCGA
* *
61652995 CGGTATTTTGGTAATTTTACAATCGA
1 GGGTATTTCGGTAATTTTACAATCGA
*
61653021 CGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTAC-AATCGA
* * * *
61653048 GGATATTTGGGTAATTTTATAAATCGG
1 GGGTATTTCGGTAATTTTA-CAATCGA
*
61653075 GGGTACTTT-GGTAATTTTACAA-CTGG
1 GGGTA-TTTCGGTAATTTTACAATC-GA
61653101 GGGTATTTC
1 GGGTATTTC
61653110 AATAATTTGG
Statistics
Matches: 373, Mismatches: 62, Indels: 53
0.76 0.13 0.11
Matches are distributed among these distances:
24 3 0.01
25 9 0.02
26 139 0.37
27 205 0.55
28 16 0.04
29 1 0.00
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (26 bp):
GGGTATTTCGGTAATTTTACAATCGA
Found at i:61654434 original size:30 final size:31
Alignment explanation
Indices: 61654376--61654438 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
61654366 CTTAACAAGT
61654376 AAATGCCTCTAAAATAATAATAAAAATTAAC
1 AAATGCCTCTAAAATAATAATAAAAATTAAC
* *
61654407 AAATGCCTTTAAAATAATAA-CAAAATTAAC
1 AAATGCCTCTAAAATAATAATAAAAATTAAC
61654437 AA
1 AA
61654439 GAGAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 11 0.37
31 19 0.63
ACGTcount: A:0.59, C:0.13, G:0.03, T:0.25
Consensus pattern (31 bp):
AAATGCCTCTAAAATAATAATAAAAATTAAC
Found at i:61657289 original size:25 final size:25
Alignment explanation
Indices: 61657260--61657307 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
61657250 TTATAACATG
61657260 AAAATGACAGTTTTGCCCCTAGGTA
1 AAAATGACAGTTTTGCCCCTAGGTA
*
61657285 AAAATGACCGTTTTGCCCCTAGG
1 AAAATGACAGTTTTGCCCCTAGG
61657308 GTTTATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAATGACAGTTTTGCCCCTAGGTA
Found at i:61657374 original size:20 final size:20
Alignment explanation
Indices: 61657351--61657404 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
61657341 TAAACATGGT
*
61657351 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATAAC
*
61657371 ATGTATGATATGCACATAAT
1 ATGTATGATATGCACATAAC
61657391 ATGTATGATATGCA
1 ATGTATGATATGCA
61657405 TATTATGTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATAAC
Found at i:61657486 original size:24 final size:24
Alignment explanation
Indices: 61657459--61657677 Score: 314
Period size: 24 Copynumber: 9.0 Consensus size: 24
61657449 GGAGGAAGTG
61657459 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
61657483 TAAAAAGGGCTTCTGCCTCAGTTAT
1 T-AAAAGGGCTTATGCCCCAGTTAT
61657508 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* * *
61657532 TAAAAGGGATTATGCCCAAATTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
61657556 TAAAAAGGGCTTATGCCCCAGTTAT
1 T-AAAAGGGCTTATGCCCCAGTTAT
*
61657581 CAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
61657605 CAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
61657629 TAAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
61657653 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
61657678 ATGATAAAGC
Statistics
Matches: 176, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
24 123 0.70
25 53 0.30
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:61657531 original size:49 final size:48
Alignment explanation
Indices: 61657459--61657677 Score: 314
Period size: 49 Copynumber: 4.5 Consensus size: 48
61657449 GGAGGAAGTG
* *
61657459 TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTCTGCCTCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTAT
* * *
61657508 TAAAAGGGCTTATGCCCCAGTTATTAAAAGGGATTATGCCCAAATTAT
1 TAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTAT
*
61657556 TAAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 T-AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTAT
* *
61657605 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTAT
*
61657653 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
61657678 ATGATAAAGC
Statistics
Matches: 153, Mismatches: 14, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
48 74 0.48
49 79 0.52
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (48 bp):
TAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTAT
Found at i:61657578 original size:73 final size:73
Alignment explanation
Indices: 61657459--61657677 Score: 325
Period size: 73 Copynumber: 3.0 Consensus size: 73
61657449 GGAGGAAGTG
* *
61657459 TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTCTGCCTCAGTTATTAAAAGGGCTTATGCC
1 TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCC
61657524 CCAGTTAT
66 CCAGTTAT
* * * *
61657532 TAAAAGGGATTATGCCCAAATTATTAAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCC
1 TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCC
61657597 CCAGTTAT
66 CCAGTTAT
* * *
61657605 CAAAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGC
1 TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGC
61657668 CTCCAGTTAT
65 C-CCAGTTAT
61657678 ATGATAAAGC
Statistics
Matches: 131, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
72 32 0.24
73 99 0.76
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (73 bp):
TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCC
CCAGTTAT
Found at i:61658925 original size:11 final size:11
Alignment explanation
Indices: 61658909--61658957 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
61658899 CTTTCTTTAT
61658909 ATACTAATAAA
1 ATACTAATAAA
61658920 ATACTAATAAA
1 ATACTAATAAA
*
61658931 ATATCTTATTAAA
1 ATA-C-TAATAAA
*
61658944 ATATTAATAAA
1 ATACTAATAAA
61658955 ATA
1 ATA
61658958 TTATTTATCT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
11 23 0.70
12 1 0.03
13 9 0.27
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (11 bp):
ATACTAATAAA
Found at i:61658998 original size:31 final size:31
Alignment explanation
Indices: 61658926--61658998 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 31
61658916 TAAAATACTA
*
61658926 ATAAAATATCTTATTAAAATATTAATAAAAT
1 ATAAAATATCTAATTAAAATATTAATAAAAT
* **
61658957 ATTATTTATCTAATT-AAATAATT-ATAAAAT
1 ATAAAATATCTAATTAAAAT-ATTAATAAAAT
61658987 ATCAAAATATCT
1 AT-AAAATATCT
61658999 CTAATATCAT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
30 13 0.39
31 20 0.61
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.41
Consensus pattern (31 bp):
ATAAAATATCTAATTAAAATATTAATAAAAT
Found at i:61659479 original size:19 final size:20
Alignment explanation
Indices: 61659448--61659491 Score: 81
Period size: 19 Copynumber: 2.2 Consensus size: 20
61659438 TTACACTATA
61659448 TGTGGGTTTATCATCGGATT
1 TGTGGGTTTATCATCGGATT
61659468 TGTGGG-TTATCATCGGATT
1 TGTGGGTTTATCATCGGATT
61659487 TGTGG
1 TGTGG
61659492 CAAATCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.14, C:0.09, G:0.34, T:0.43
Consensus pattern (20 bp):
TGTGGGTTTATCATCGGATT
Found at i:61662205 original size:3 final size:3
Alignment explanation
Indices: 61662197--61662240 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
61662187 AGTAACCCTA
* * * *
61662197 AAT AAT AAT AAT AGT AAT AAT AAT AGT GAT AAT AAC AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
61662241 AAGCGAATGA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:61662429 original size:16 final size:16
Alignment explanation
Indices: 61662404--61662438 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
61662394 TAAACTGTAA
*
61662404 AAATAAGTAAATAGAT
1 AAATAAGTAAATAAAT
*
61662420 AAATACGTAAATAAAT
1 AAATAAGTAAATAAAT
61662436 AAA
1 AAA
61662439 ATGGGAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.66, C:0.03, G:0.09, T:0.23
Consensus pattern (16 bp):
AAATAAGTAAATAAAT
Found at i:61662530 original size:13 final size:13
Alignment explanation
Indices: 61662514--61662538 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61662504 AAGTATAAAT
61662514 GTAAATAAAATAA
1 GTAAATAAAATAA
61662527 GTAAATAAAATA
1 GTAAATAAAATA
61662539 CTAAACTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
GTAAATAAAATAA
Found at i:61663837 original size:3 final size:3
Alignment explanation
Indices: 61663831--61663859 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
61663821 AATGTTGTTG
61663831 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
61663860 GGTTTTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:61666764 original size:57 final size:57
Alignment explanation
Indices: 61666676--61666809 Score: 241
Period size: 57 Copynumber: 2.4 Consensus size: 57
61666666 CAAAAGAAAA
*
61666676 ATAAAGGAATCGCGGAATATGGAAGACGGTGATTCATTGAAGATATCCATTTATATG
1 ATAAAGGAATCGCAGAATATGGAAGACGGTGATTCATTGAAGATATCCATTTATATG
*
61666733 ATAAAGGAATCGCAGAATATGGAAGATGGTGATTCATTGAAGATATCCATTTATATG
1 ATAAAGGAATCGCAGAATATGGAAGACGGTGATTCATTGAAGATATCCATTTATATG
*
61666790 ATAAAGGAATCGCCGAATAT
1 ATAAAGGAATCGCAGAATAT
61666810 ATATGGAAGT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 74 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (57 bp):
ATAAAGGAATCGCAGAATATGGAAGACGGTGATTCATTGAAGATATCCATTTATATG
Found at i:61669595 original size:120 final size:122
Alignment explanation
Indices: 61669452--61669765 Score: 359
Period size: 120 Copynumber: 2.5 Consensus size: 122
61669442 TATTTAGTCC
* * * * * * *
61669452 AACGAAAAACCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATTAAACATTGC
1 AACGGAAAATCGAAACCCAGCACGATAGGGCACTATTCCCCAAATTTCCAAACATCAAACATTGC
* *
61669517 CTCATTTTA-GAA-AACAGGAGTGAAATTCC-AAAGGAATATTCAATTATTTTGAACA
66 CTCATTTTAGGAAGAACACGAGT-AAAATCCTAAAGGAATATTCAATTATTTTGAACA
*
61669572 AACAGG-AAATCGAAACCCAGCACGATAGGGCACTATTCCCCAAATTTCCAAACATCAAATATTG
1 AAC-GGAAAATCGAAACCCAGCACGATAGGGCACTATTCCCCAAATTTCCAAACATCAAACATTG
* ** * *
61669636 TCTTGTTTTAGCGTTTGGAAGGACACGAGTAAAATCCTAAAGGAATATTCGATTATTTTGAACA
65 CCTCATTTTA------GGAAGAACACGAGTAAAATCCTAAAGGAATATTCAATTATTTTGAACA
* * *
61669700 AACGGAAAATCGAAACCCAGCACGATA-GGCACTATTCCCCAAATTCCCAAACATCGAATATTGC
1 AACGGAAAATCGAAACCCAGCACGATAGGGCACTATTCCCCAAATTTCCAAACATCAAACATTGC
61669764 CT
66 CT
61669766 TTGTTTTAGT
Statistics
Matches: 165, Mismatches: 18, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
120 61 0.37
121 1 0.01
127 47 0.28
128 56 0.34
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (122 bp):
AACGGAAAATCGAAACCCAGCACGATAGGGCACTATTCCCCAAATTTCCAAACATCAAACATTGC
CTCATTTTAGGAAGAACACGAGTAAAATCCTAAAGGAATATTCAATTATTTTGAACA
Found at i:61670709 original size:7 final size:7
Alignment explanation
Indices: 61670697--61670727 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
61670687 CCTTAAAATA
61670697 AAATAAT
1 AAATAAT
61670704 AAATAAT
1 AAATAAT
61670711 AAATAAT
1 AAATAAT
61670718 AAATAAT
1 AAATAAT
61670725 AAA
1 AAA
61670728 GTCCAGTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATAAT
Found at i:61677361 original size:206 final size:206
Alignment explanation
Indices: 61676986--61677743 Score: 1088
Period size: 206 Copynumber: 3.7 Consensus size: 206
61676976 GCAGATCTGG
* ** *
61676986 CTGAAGCAAGATCTAAGATGATTTGGCATCCTTGTACTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAAACATAGCT
* * * *
61677051 GATTTGGCTTTCACGTGCTTACGA-TAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTA
65 AATTTAGCTTTCACGTGCTTAC-ACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* * * *
61677115 GAGAGCAGATCAAAGTTTGGCATCTCCATTTTCAACGGAGGGCAGACACATAGCAGATCTAACCT
129 GAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCT
* *
61677180 TTAGATGACTAGA
194 TCAGATGATTAGA
* *
61677193 CTGAAGCAGCTCCAAGATGATATGGCATCCTTGTGTTTACAAGGAACAAATC-AAAATCATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAAA-CATAGCT
* * * *
61677257 GATTTAGCTTTCACGTGCTTACACTGAAGCAAGTCTAAGATAATTTGGCATCTCTATATTGTCAG
65 AATTTAGCTTTCACGTGCTTACACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * * *
61677322 AGAGCAGATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGTAAATCTAGCCTT
130 AGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
61677387 CAGATGATTAGA
195 CAGATGATTAGA
*
61677399 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTA
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAAACATAGCTA
*
61677464 ATTTAGCTTTCACGTGCTTACACTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTAGCTTTCACGTGCTTACACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
61677529 GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAACAGATCTAACCTTC
131 GAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
61677594 AGATGATTAGA
196 AGATGATTAGA
* * * * * *
61677605 CTGAAGCAAATCCAAGATGGTTTGGTATCCTTGTGTTTACAATGAGCAAATCGAAGACATAGCTA
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAAACATAGCTA
* * * * * * *
61677670 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGCCATCTTTGTATTGTCAGG
66 ATTTAGCTTTCACGTGCTTACACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
61677735 GAACAAATC
131 GAACAAATC
61677744 GAAGAAGCAG
Statistics
Matches: 499, Mismatches: 49, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
205 4 0.01
206 485 0.97
207 10 0.02
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAAACATAGCTA
ATTTAGCTTTCACGTGCTTACACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:61682998 original size:68 final size:64
Alignment explanation
Indices: 61682875--61683093 Score: 253
Period size: 68 Copynumber: 3.3 Consensus size: 64
61682865 AAAGATACGG
61682875 GATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATACCATGT-GTACAAGAGAGCTATGA
1 GATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATACCATGTAG-ACAAGAGAGCTATGA
* *
61682939 GATACTATGTGGTAGCTAGGTCACATGTGTGATACGGGATGTATACCATGTAGAGAAGAGAGCTA
1 GATA--A-AT-GTAGCTAGGTCACATGTGTGATACGGGATGTATACCATGTAGACAAGAGAGCTA
* *
61683004 CGG
62 TGA
* * * * * *
61683007 GATAAATGTAGCTAGGTCGCATGTGTGGTTTCAGGTGAAGGACACCATGTAGACAAGAGAGCTAT
1 GATAAATGTAGCTAGGTCACATGTGT-GATAC-GG-GATGTATACCATGTAGACAAGAGAGCTAT
61683072 GA
63 GA
*
61683074 GATAAA-GTGGCTAGGTCACA
1 GATAAATGTAGCTAGGTCACA
61683094 CGGGTGGTAC
Statistics
Matches: 131, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
64 22 0.17
65 4 0.03
66 16 0.12
67 32 0.24
68 56 0.43
69 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.31, T:0.25
Consensus pattern (64 bp):
GATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATACCATGTAGACAAGAGAGCTATGA
Found at i:61685175 original size:29 final size:30
Alignment explanation
Indices: 61685132--61685194 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
61685122 AACTTTTATC
* * * * *
61685132 AAATATATATAAATATCATATTTGACAAAA
1 AAATATATACAAATACCACATTAGAAAAAA
61685162 AAATA-ATACAAATACCACATTAGAAAAAA
1 AAATATATACAAATACCACATTAGAAAAAA
61685191 AAAT
1 AAAT
61685195 TTGTTAAACT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 23 0.82
30 5 0.18
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.25
Consensus pattern (30 bp):
AAATATATACAAATACCACATTAGAAAAAA
Found at i:61685639 original size:2 final size:2
Alignment explanation
Indices: 61685627--61685663 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
61685617 TCAAAGGTTT
*
61685627 TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
61685664 TTTAAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:61693150 original size:26 final size:24
Alignment explanation
Indices: 61693121--61693177 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 24
61693111 TCTAATATAT
61693121 ATAATACATGAAACAAATTAAAATAA
1 ATAATA-AT-AAACAAATTAAAATAA
*
61693147 ATAACATAATAAACAATTTAAAATAA
1 AT-A-ATAATAAACAAATTAAAATAA
61693173 ATAAT
1 ATAAT
61693178 GTATAAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
24 2 0.07
25 1 0.04
26 19 0.68
27 3 0.11
28 3 0.11
ACGTcount: A:0.65, C:0.07, G:0.02, T:0.26
Consensus pattern (24 bp):
ATAATAATAAACAAATTAAAATAA
Found at i:61693913 original size:2 final size:2
Alignment explanation
Indices: 61693908--61693945 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
61693898 TATATATATA
61693908 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
61693946 CACAATATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:61695393 original size:8 final size:8
Alignment explanation
Indices: 61695394--61695538 Score: 281
Period size: 8 Copynumber: 18.1 Consensus size: 8
61695384 TATGTATATA
61695394 TATGTATG
1 TATGTATG
61695402 TATGTATG
1 TATGTATG
61695410 TATGTATG
1 TATGTATG
61695418 TATGTATG
1 TATGTATG
61695426 TATGTATG
1 TATGTATG
61695434 TATGTATG
1 TATGTATG
61695442 TATGTATG
1 TATGTATG
61695450 TATGTATG
1 TATGTATG
61695458 TATGTATG
1 TATGTATG
61695466 TATGTATG
1 TATGTATG
61695474 TATGTATG
1 TATGTATG
61695482 TATGTATG
1 TATGTATG
61695490 TATGTATG
1 TATGTATG
61695498 TATGTATG
1 TATGTATG
61695506 TATGTATG
1 TATGTATG
61695514 TATGTATG
1 TATGTATG
61695522 TATGTATG
1 TATGTATG
*
61695530 TATATATG
1 TATGTATG
61695538 T
1 T
61695539 GTATATATGT
Statistics
Matches: 136, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
8 136 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (8 bp):
TATGTATG
Found at i:61695558 original size:20 final size:20
Alignment explanation
Indices: 61695394--61695538 Score: 281
Period size: 20 Copynumber: 7.2 Consensus size: 20
61695384 TATGTATATA
61695394 TATGTATGTATGTATGTATG
1 TATGTATGTATGTATGTATG
61695414 TATGTATGTATGTATGTATG
1 TATGTATGTATGTATGTATG
61695434 TATGTATGTATGTATGTATG
1 TATGTATGTATGTATGTATG
61695454 TATGTATGTATGTATGTATG
1 TATGTATGTATGTATGTATG
61695474 TATGTATGTATGTATGTATG
1 TATGTATGTATGTATGTATG
61695494 TATGTATGTATGTATGTATG
1 TATGTATGTATGTATGTATG
*
61695514 TATGTATGTATGTATGTATA
1 TATGTATGTATGTATGTATG
61695534 TATGT
1 TATGT
61695539 GTATATATGT
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
20 124 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (20 bp):
TATGTATGTATGTATGTATG
Found at i:61695566 original size:20 final size:20
Alignment explanation
Indices: 61695350--61695560 Score: 260
Period size: 20 Copynumber: 10.6 Consensus size: 20
61695340 TATATATGTA
* * * *
61695350 TATATATGTATATATATGTA
1 TATATATGTATGTATGTATG
* * * *
61695370 TATATATGTATATATATGTA
1 TATATATGTATGTATGTATG
61695390 TATATATGTATGTATGTATG
1 TATATATGTATGTATGTATG
*
61695410 TATGTATGTATGTATGTATG
1 TATATATGTATGTATGTATG
*
61695430 TATGTATGTATGTATGTATG
1 TATATATGTATGTATGTATG
*
61695450 TATGTATGTATGTATGTATG
1 TATATATGTATGTATGTATG
*
61695470 TATGTATGTATGTATGTATG
1 TATATATGTATGTATGTATG
*
61695490 TATGTATGTATGTATGTATG
1 TATATATGTATGTATGTATG
*
61695510 TATGTATGTATGTATGTATG
1 TATATATGTATGTATGTATG
* * * *
61695530 TATATATGTGTATATATGTG
1 TATATATGTATGTATGTATG
61695550 TATATATGTAT
1 TATATATGTAT
61695561 ACATATATAT
Statistics
Matches: 180, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 180 1.00
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.50
Consensus pattern (20 bp):
TATATATGTATGTATGTATG
Found at i:61695569 original size:8 final size:8
Alignment explanation
Indices: 61695558--61695653 Score: 102
Period size: 8 Copynumber: 11.5 Consensus size: 8
61695548 TGTATATATG
61695558 TATACATA
1 TATACATA
* *
61695566 TATATATG
1 TATACATA
61695574 TATACATA
1 TATACATA
61695582 TATACACATA
1 TAT--ACATA
*
61695592 TATACACA
1 TATACATA
61695600 TATACATA
1 TATACATA
61695608 TATACACATA
1 TAT--ACATA
61695618 TATACATA
1 TATACATA
61695626 TATACATA
1 TATACATA
* *
61695634 TATATATG
1 TATACATA
*
61695642 TATATATA
1 TATACATA
61695650 TATA
1 TATA
61695654 TATGGTTGAG
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
8 59 0.79
10 16 0.21
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (8 bp):
TATACATA
Found at i:61695578 original size:16 final size:16
Alignment explanation
Indices: 61695550--61695753 Score: 125
Period size: 16 Copynumber: 12.5 Consensus size: 16
61695540 TATATATGTG
61695550 TATATATGTATACATA
1 TATATATGTATACATA
61695566 TATATATGTATACATA
1 TATATATGTATACATA
* *
61695582 TATACACATATATACACATA
1 TAT----ATATGTATACATA
* * *
61695602 TACATATATACACATA
1 TATATATGTATACATA
* *
61695618 TATACATATATACATA
1 TATATATGTATACATA
*
61695634 TATATATGTATATATA
1 TATATATGTATACATA
* *
61695650 TATATATGGTTGAGCCACCAAA
1 TATATAT-G-T-A--TA-CATA
* * *
61695672 TACGACAGGT-TAC--A
1 TA-TATATGTATACATA
61695686 TATATATGTATAC--A
1 TATATATGTATACATA
61695700 TATATA--TATACATA
1 TATATATGTATACATA
61695714 TATATATGTATACATA
1 TATATATGTATACATA
* *
61695730 TATATATATATATATA
1 TATATATGTATACATA
61695746 TATATATG
1 TATATATG
61695754 GTTGACCCAC
Statistics
Matches: 150, Mismatches: 22, Indels: 32
0.74 0.11 0.16
Matches are distributed among these distances:
12 5 0.03
13 4 0.03
14 20 0.13
16 95 0.63
17 2 0.01
18 1 0.01
19 1 0.01
20 13 0.09
21 2 0.01
22 5 0.03
23 2 0.01
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGTATACATA
Found at i:61695582 original size:26 final size:26
Alignment explanation
Indices: 61695561--61695655 Score: 127
Period size: 26 Copynumber: 3.7 Consensus size: 26
61695551 ATATATGTAT
*
61695561 ACATATATATATGTATACATATATAC
1 ACATATATATATATATACATATATAC
* *
61695587 ACATATATACACATATACATATATAC
1 ACATATATATATATATACATATATAC
* *
61695613 ACATATATACATATATACATATATAT
1 ACATATATATATATATACATATATAC
**
61695639 ATGTATATATATATATA
1 ACATATATATATATATA
61695656 TGGTTGAGCC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 61 1.00
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (26 bp):
ACATATATATATATATACATATATAC
Found at i:61695603 original size:10 final size:10
Alignment explanation
Indices: 61695577--61695639 Score: 75
Period size: 10 Copynumber: 6.9 Consensus size: 10
61695567 ATATATGTAT
61695577 ACATATATAC
1 ACATATATAC
61695587 ACATATATAC
1 ACATATATAC
61695597 AC--ATAT--
1 ACATATATAC
61695603 ACATATATAC
1 ACATATATAC
61695613 ACATATAT--
1 ACATATATAC
61695621 ACATATATAC
1 ACATATATAC
*
61695631 ATATATATA
1 ACATATATA
61695640 TGTATATATA
Statistics
Matches: 46, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
6 2 0.04
8 16 0.35
10 28 0.61
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (10 bp):
ACATATATAC
Found at i:61695692 original size:2 final size:2
Alignment explanation
Indices: 61695685--61695752 Score: 91
Period size: 2 Copynumber: 34.0 Consensus size: 2
61695675 GACAGGTTAC
* * * * *
61695685 AT AT AT AT GT AT AC AT AT AT AT AT AC AT AT AT AT AT GT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61695727 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
61695753 GGTTGACCCA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:61695717 original size:96 final size:96
Alignment explanation
Indices: 61695605--61695779 Score: 305
Period size: 96 Copynumber: 1.8 Consensus size: 96
61695595 ACACATATAC
* *
61695605 ATATATACACATATATACATATATACATATATATATGTATATATATATATATGGTTGAGCCACCA
1 ATATATACACATATATACATATATACATATATATATATATATATATATATATGGTTGACCCACCA
61695670 AATACGACAGGTTACATATATATGTATACAT
66 AATACGACAGGTTACATATATATGTATACAT
* * *
61695701 ATATATATACATATATATATGTATACATATATATATATATATATATATATATGGTTGACCCACCA
1 ATATATACACATATATACATATATACATATATATATATATATATATATATATGGTTGACCCACCA
61695766 AATACGACAGGTTA
66 AATACGACAGGTTA
61695780 TTATATTGCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 74 1.00
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (96 bp):
ATATATACACATATATACATATATACATATATATATATATATATATATATATGGTTGACCCACCA
AATACGACAGGTTACATATATATGTATACAT
Found at i:61695723 original size:28 final size:28
Alignment explanation
Indices: 61695685--61695748 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
61695675 GACAGGTTAC
61695685 ATATATATGTATACATATATATATACAT
1 ATATATATGTATACATATATATATACAT
*
61695713 ATATATATGTATACATATATATATATAT
1 ATATATATGTATACATATATATATACAT
61695741 ATATATAT
1 ATATATAT
61695749 ATATGGTTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (28 bp):
ATATATATGTATACATATATATATACAT
Found at i:61703435 original size:55 final size:55
Alignment explanation
Indices: 61703325--61703428 Score: 138
Period size: 55 Copynumber: 1.9 Consensus size: 55
61703315 TAAACCCTGT
* * **
61703325 TTGCTTGACACGTAGGCTCTGACGAGCTCCCCAAGAGCTCGCCTGTTATAAGTGC
1 TTGCCTGACACGTAGGCTCTGACGAGCTCCCCAAGAGCTCACCCATTATAAGTGC
* *
61703380 TTGCCTGACATGTAGGCTCTGGA-GAGCTCCCTAAGAGCTCACCCATTAT
1 TTGCCTGACACGTAGGCTCT-GACGAGCTCCCCAAGAGCTCACCCATTAT
61703429 GGGTGCTCAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
55 40 0.95
56 2 0.05
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (55 bp):
TTGCCTGACACGTAGGCTCTGACGAGCTCCCCAAGAGCTCACCCATTATAAGTGC
Found at i:61703863 original size:17 final size:18
Alignment explanation
Indices: 61703828--61703873 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
61703818 TTTTCTATCA
* *
61703828 TTTTAAATATTTTATATT
1 TTTTAAAAATTCTATATT
61703846 TTTTAAAAATTCTA-ATT
1 TTTTAAAAATTCTATATT
*
61703863 TTTAAAAAATT
1 TTTTAAAAATT
61703874 TCAAAAATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTTAAAAATTCTATATT
Found at i:61705850 original size:28 final size:28
Alignment explanation
Indices: 61705805--61705873 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
61705795 ATTTAAACCC
*
61705805 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
61705832 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
61705860 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
61705874 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:61707523 original size:20 final size:20
Alignment explanation
Indices: 61707500--61707537 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
61707490 CACATCCAAA
*
61707500 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
61707520 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
61707538 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:61713841 original size:27 final size:27
Alignment explanation
Indices: 61713811--61713879 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
61713801 TTTAAAACCC
*
61713811 TAGGGGT-ATATTGGTAATTTTGCTCTT
1 TAGGGGTAAT-TTCGTAATTTTGCTCTT
61713838 TAGGGGTAATTTCGTAATTTTGCTCTT
1 TAGGGGTAATTTCGTAATTTTGCTCTT
61713865 TAGGGGTAATTTCGT
1 TAGGGGTAATTTCGT
61713880 GATCTACGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 38 0.95
28 2 0.05
ACGTcount: A:0.19, C:0.09, G:0.26, T:0.46
Consensus pattern (27 bp):
TAGGGGTAATTTCGTAATTTTGCTCTT
Found at i:61715528 original size:20 final size:20
Alignment explanation
Indices: 61715505--61715542 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
61715495 CACATCCAAA
*
61715505 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
61715525 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
61715543 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:61718321 original size:18 final size:18
Alignment explanation
Indices: 61718300--61718355 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
61718290 ATATTTTATA
61718300 AAATATAAATATGCTCAT
1 AAATATAAATATGCTCAT
** *
61718318 AAATAT-TTTAT-AT-A-
1 AAATATAAATATGCTCAT
61718332 AAATATAAATATGCTCAT
1 AAATATAAATATGCTCAT
61718350 AAATAT
1 AAATAT
61718356 TAAAAAGTGA
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
14 6 0.21
15 4 0.14
16 2 0.07
17 4 0.14
18 12 0.43
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.38
Consensus pattern (18 bp):
AAATATAAATATGCTCAT
Found at i:61728268 original size:131 final size:129
Alignment explanation
Indices: 61728070--61728396 Score: 473
Period size: 131 Copynumber: 2.5 Consensus size: 129
61728060 TTCATTCAAA
*
61728070 AAAATT-TTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCT
1 AAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCCACCGTGCT
* *
61728134 GGGTTACAATTTCCCGTTTGT-TCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGTCTTT
66 GGGTTACAATTTCCCATTT-TCTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT-TTT
*
61728198 G
129 C
* * * *
61728199 AAAATTCTTCAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCCATCGTGT
1 AAAATTCTT-AAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCCACCGTGC
*
61728264 TGGGTTGCAATTTCCCATTTTCTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTC
65 TGGGTTACAATTTCCCATTTTCTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTC
* * * * *
61728329 TAAATTC-TAAAAC-AAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCGTGCTCTACCTTGCT
1 AAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCCACCGTGCT
61728392 GGGTT
66 GGGTT
61728397 TCGATTTTTC
Statistics
Matches: 177, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
127 47 0.27
128 5 0.03
129 7 0.04
130 12 0.07
131 106 0.60
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (129 bp):
AAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCCACCGTGCT
GGGTTACAATTTCCCATTTTCTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTC
Found at i:61739866 original size:43 final size:43
Alignment explanation
Indices: 61739819--61739953 Score: 103
Period size: 43 Copynumber: 3.1 Consensus size: 43
61739809 GGAGCAGATC
61739819 GAAGAAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCT
1 GAAGAAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCT
* * * ** * ** * ***
61739862 GAAG-ATTGCAGATCTTGTCTCCCTAAACAGTAGTGG-AGCAAATT
1 GAAGAAGT-AAG-CCTTAACCCCCTAAGTAGTAG-GGTAACAGGCT
* *
61739906 GAAGAAGCAAGCCTTAACCCTCTAAGTAGTAGGGTAACAGGCT
1 GAAGAAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCT
61739949 GAAGA
1 GAAGA
61739954 TTGCAGATCT
Statistics
Matches: 61, Mismatches: 26, Indels: 10
0.63 0.27 0.10
Matches are distributed among these distances:
42 4 0.07
43 29 0.48
44 25 0.41
45 3 0.05
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (43 bp):
GAAGAAGTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCT
Found at i:61739894 original size:44 final size:43
Alignment explanation
Indices: 61739837--61739970 Score: 103
Period size: 44 Copynumber: 3.1 Consensus size: 43
61739827 AAGCCTTAAC
**
61739837 CCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGT
1 CCCCTAAACAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGT
* *** * * **
61739880 CTCCCTAAACAGTAGTGG-AGCAAATTGAAGA-AGCA-AGCCTTAA
1 C-CCCTAAACAGTAG-GGTAACAGGCTGAAGATTGCAGA-TCTTGT
**
61739923 CCCTCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGT
1 CCC-CTAAACAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGT
61739967 CCCC
1 CCCC
61739971 CTGAAGTTGC
Statistics
Matches: 64, Mismatches: 20, Indels: 14
0.65 0.20 0.14
Matches are distributed among these distances:
42 5 0.08
43 27 0.42
44 29 0.45
45 3 0.05
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (43 bp):
CCCCTAAACAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGT
Found at i:61739931 original size:87 final size:88
Alignment explanation
Indices: 61739783--61740126 Score: 440
Period size: 87 Copynumber: 3.9 Consensus size: 88
61739773 AGTGAATTCA
* * *
61739783 CAGATCTTGCCTCCCTGAGCAGTAGTGGAGCAGATCGAAGA-AGTAAGCCTTAACCCCCTAAGTA
1 CAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGTAAGCCTTAACCCCCTAAGTA
61739847 GTAGGGTAACAGGCTGAAGATTG
66 GTAGGGTAACAGGCTGAAGATTG
* * * *
61739870 CAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATTGAAGA-AGCAAGCCTTAACCCTCTAAGTA
1 CAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGTAAGCCTTAACCCCCTAAGTA
61739934 GTAGGGTAACAGGCTGAAGATTG
66 GTAGGGTAACAGGCTGAAGATTG
* ** * * * * *
61739957 CAGATCTTGTCCCCCTGAAGTTGCAGTGGAACAGATCAAAGACAGTGAGCCTTAACCCCCTAAGT
1 CAGATCTTGTCTCCCT-AAGCAGTAGTGGAGCAAATCGAAGACAGTAAGCCTTAACCCCCTAAGT
* **
61740022 AGTAGGGTAACAAGCCAAAGATTG
65 AGTAGGGTAACAGGCTGAAGATTG
* * * * * *
61740046 TAGATCTTGTCTTCCTAAGTAGTAGTGGAGCAAATCGAAGACGGTGAGCCTTAACCCCCTAAGCA
1 CAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGTAAGCCTTAACCCCCTAAGTA
*
61740111 GTAAGGTAACAGGCTG
66 GTAGGGTAACAGGCTG
61740127 TAAATTACAA
Statistics
Matches: 219, Mismatches: 36, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
87 95 0.43
88 71 0.32
89 53 0.24
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (88 bp):
CAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGTAAGCCTTAACCCCCTAAGTA
GTAGGGTAACAGGCTGAAGATTG
Found at i:61740042 original size:44 final size:44
Alignment explanation
Indices: 61739993--61740121 Score: 100
Period size: 44 Copynumber: 2.9 Consensus size: 44
61739983 TGGAACAGAT
*
61739993 CAAAGACAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAACAAGC
1 CAAAGACAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAACAAAC
** * ** ** * *
61740037 CAAAGATTGT-AGATCTTGTCTTCCTAAGTAGTAGTGG-AGCAAAT
1 CAAAGACAGTGAG-CCTTAACCCCCTAAGTAGTAG-GGTAACAAAC
* * * *
61740081 CGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAAGGTAACA
1 CAAAGACAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAACA
61740122 GGCTGTAAAT
Statistics
Matches: 60, Mismatches: 21, Indels: 8
0.67 0.24 0.09
Matches are distributed among these distances:
43 4 0.07
44 52 0.87
45 4 0.07
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (44 bp):
CAAAGACAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAACAAAC
Found at i:61740247 original size:44 final size:45
Alignment explanation
Indices: 61740138--61740256 Score: 154
Period size: 45 Copynumber: 2.7 Consensus size: 45
61740128 AAATTACAAG
* *
61740138 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAGTTAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTCAGCAGA
*
61740183 TCTTATTTCCCTGAAGTTGCAGTGGAGCAGA-TCGAAGTCA-CA-A
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGTCAGCAGA
* *
61740226 TCCTTATCTCTCTGAAGTTGCAGTAGAGCAG
1 T-CTTATCTCCCTGAAGTTGCAGTGGAGCAG
61740257 GATAAAAACA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
43 2 0.03
44 29 0.44
45 35 0.53
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTCAGCAGA
Found at i:61743482 original size:24 final size:23
Alignment explanation
Indices: 61743446--61743492 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
61743436 AATTTTTATT
* *
61743446 TATAATAAAATAATTATATAATA
1 TATAATAAAATAAGTATAAAATA
*
61743469 TATATATAATATAAGTATAAAATA
1 TATA-ATAAAATAAGTATAAAATA
61743493 AGTAATTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
TATAATAAAATAAGTATAAAATA
Found at i:61743843 original size:20 final size:20
Alignment explanation
Indices: 61743818--61743862 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
61743808 ATTTGTGAAA
61743818 AATAATAT-ATAATAA-ATAAT
1 AATAATATGA-AATAATAT-AT
61743838 AATAATATGAAATAATATAT
1 AATAATATGAAATAATATAT
61743858 AATAA
1 AATAA
61743863 AATAATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (20 bp):
AATAATATGAAATAATATAT
Found at i:61743844 original size:23 final size:22
Alignment explanation
Indices: 61743816--61743891 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 22
61743806 TAATTTGTGA
*
61743816 AAAATAATATATAATAAATAAT
1 AAAATAATATATAATATATAAT
*
61743838 AATAAT-ATGAAATAATATATAAT
1 AA-AATAAT-ATATAATATATAAT
*
61743861 AAAATAATTTTATAATATATATAT
1 AAAATAA-TATATAATATATA-AT
61743885 AAAATAA
1 AAAATAA
61743892 GGTTAAAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
22 7 0.16
23 28 0.62
24 10 0.22
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (22 bp):
AAAATAATATATAATATATAAT
Found at i:61743902 original size:25 final size:23
Alignment explanation
Indices: 61743851--61743902 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
61743841 AATATGAAAT
* * *
61743851 AATATATAATAAAATAATTTTAT
1 AATATATAATAAAATAAGTTAAA
61743874 AATATATATATAAAATAAGGTTAAA
1 AATATATA-ATAAAATAA-GTTAAA
61743899 AATA
1 AATA
61743903 AAACAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 8 0.33
24 9 0.38
25 7 0.29
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
AATATATAATAAAATAAGTTAAA
Found at i:61746043 original size:126 final size:130
Alignment explanation
Indices: 61745706--61746030 Score: 453
Period size: 131 Copynumber: 2.5 Consensus size: 130
61745696 TTCATTCAAG
* *
61745706 AATTCTTTAAAACGAATGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTACC-TGCTG
1 AATTC-TTAAAACAAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTG
* * * * *
61745770 GGTTGCAATTTCCCGTTTGTTCAAAATAATTGAATATTCCTTTGGAATTTCACTCATGTCTTTGA
65 GGTTGCAATTTCTCGTTCGCTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTGA
61745835 A
130 A
* * * *
61745836 AATTCTTCAAAACAAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGGGCTG
1 AATTCTT-AAAACAAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTG
* *
61745901 GATTGCAATTTCTCGTTCGCTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT-TTT-T
65 GGTTGCAATTTCTCGTTCGCTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTGA
61745964 A
130 A
* * *
61745965 AATTC-TAAAAC-AAGGCAATGTTCAATGTTTGGAAATTTGGGGAATCGTGCTCTACCGTGCTGG
1 AATTCTTAAAACAAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGG
61746028 GTT
66 GTT
61746031 TCGATTTTTC
Statistics
Matches: 172, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
126 47 0.27
127 5 0.03
128 1 0.01
129 8 0.05
130 54 0.31
131 57 0.33
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (130 bp):
AATTCTTAAAACAAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGG
GTTGCAATTTCTCGTTCGCTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTGAA
Found at i:61746078 original size:126 final size:128
Alignment explanation
Indices: 61745706--61746057 Score: 417
Period size: 126 Copynumber: 2.7 Consensus size: 128
61745696 TTCATTCAAG
* *
61745706 AATTCTTTAAAACGAATGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTACC-TGCTG
1 AATTC-TTAAAACAAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTG
* * * *
61745770 GGTTGCAATTTCCCGTTTGTTCAAAATAATTGAATATTCCTTTGGAATTTCACTCATGTCTTTGA
65 GGTTGCAATTTCTCG-TTG-GCTAAATAATTGAATATTCCTTTTGAATTTCACTCATGTCTTTGA
61745835 A
128 A
* * * *
61745836 AATTCTTCAAAACAAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGGGCTG
1 AATTCTT-AAAACAAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTG
* * * * *
61745901 GATTGCAATTTCTCGTTCGCTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT-TTT-T
65 GGTTGCAATTTCTCGTTGGCT--AAATAATTGAATATTCCTTTTGAATTTCACTCATGTCTTTGA
61745964 A
128 A
* * *
61745965 AATTC-TAAAAC-AAGGCAATGTTCAATGTTTGGAAATTTGGGGAATCGTGCTCTACCGTGCTGG
1 AATTCTTAAAACAAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGG
* * *
61746028 GTTTCGATTTTTCGTTGGACTAAATAATTG
66 GTTGCAATTTCTCGTTGG-CTAAATAATTG
61746058 GGCATCCTTT
Statistics
Matches: 190, Mismatches: 27, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
125 8 0.04
126 58 0.31
127 7 0.04
128 1 0.01
129 9 0.05
130 56 0.29
131 51 0.27
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (128 bp):
AATTCTTAAAACAAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGG
GTTGCAATTTCTCGTTGGCTAAATAATTGAATATTCCTTTTGAATTTCACTCATGTCTTTGAA
Found at i:61746868 original size:17 final size:18
Alignment explanation
Indices: 61746846--61746879 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
61746836 TTGACTAAGT
*
61746846 TTTCGGTTTTG-GTTTTG
1 TTTCGGGTTTGTGTTTTG
61746863 TTTCGGGTTTGTGTTTT
1 TTTCGGGTTTGTGTTTT
61746880 ATTCATCGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.00, C:0.06, G:0.29, T:0.65
Consensus pattern (18 bp):
TTTCGGGTTTGTGTTTTG
Found at i:61756093 original size:28 final size:28
Alignment explanation
Indices: 61756032--61756129 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
61756022 TCACAAATTG
** * *
61756032 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
61756061 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
61756089 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
61756117 GCACTAAGTGTGC
1 GCACTAAGTGTGC
61756130 GGCTTATTGC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:61763772 original size:28 final size:28
Alignment explanation
Indices: 61763711--61763808 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
61763701 TCACAAATTG
** * *
61763711 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
61763740 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
61763768 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
61763796 GCACTAAGTGTGC
1 GCACTAAGTGTGC
61763809 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:61766284 original size:24 final size:24
Alignment explanation
Indices: 61766257--61766348 Score: 148
Period size: 24 Copynumber: 3.8 Consensus size: 24
61766247 TTGACATTCC
*
61766257 AATCCACACACATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
61766281 AATCCGCACACATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
* *
61766305 AATTCGCACACATAGTGCCATTCA
1 AATCCGCACACATAGTGCCATACA
*
61766329 AATTCGCACACATAGTGCCA
1 AATCCGCACACATAGTGCCA
61766349 AAATCATTTC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.37, C:0.32, G:0.12, T:0.20
Consensus pattern (24 bp):
AATCCGCACACATAGTGCCATACA
Found at i:61766294 original size:48 final size:48
Alignment explanation
Indices: 61766242--61766345 Score: 136
Period size: 48 Copynumber: 2.2 Consensus size: 48
61766232 TAATTCACAT
* * *
61766242 ACATATTGACATTCCAATCCACACACATAGTGCCATACAAATCCGCAC
1 ACATAGTGACATACAAATCCACACACATAGTGCCATACAAATCCGCAC
* * * * *
61766290 ACATAGTGCCATACAAATTCGCACACATAGTGCCATTCAAATTCGCAC
1 ACATAGTGACATACAAATCCACACACATAGTGCCATACAAATCCGCAC
61766338 ACATAGTG
1 ACATAGTG
61766346 CCAAAATCAT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.37, C:0.30, G:0.12, T:0.22
Consensus pattern (48 bp):
ACATAGTGACATACAAATCCACACACATAGTGCCATACAAATCCGCAC
Found at i:61766318 original size:72 final size:72
Alignment explanation
Indices: 61766212--61766348 Score: 175
Period size: 72 Copynumber: 1.9 Consensus size: 72
61766202 CCATGTTAAC
* ** * * *
61766212 CCGCACACATAGTACCTTAGTAATTCACATACATATTGACATTCCAATCCACACACATAGTGCCA
1 CCGCACACATAGTACCATACAAATTCACACACATAGTGACATTCAAATCCACACACATAGTGCCA
61766277 TACAAAT
66 TACAAAT
* * * * *
61766284 CCGCACACATAGTGCCATACAAATTCGCACACATAGTGCCATTCAAATTCGCACACATAGTGCCA
1 CCGCACACATAGTACCATACAAATTCACACACATAGTGACATTCAAATCCACACACATAGTGCCA
61766349 AAATCATTTC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
72 54 1.00
ACGTcount: A:0.36, C:0.31, G:0.11, T:0.23
Consensus pattern (72 bp):
CCGCACACATAGTACCATACAAATTCACACACATAGTGACATTCAAATCCACACACATAGTGCCA
TACAAAT
Found at i:61767549 original size:17 final size:17
Alignment explanation
Indices: 61767527--61767560 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
61767517 CCCCACTTAA
*
61767527 TATATTATAACTTATTT
1 TATATTATAACATATTT
61767544 TATATTATAACATATTT
1 TATATTATAACATATTT
61767561 CAATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:61768580 original size:22 final size:20
Alignment explanation
Indices: 61768530--61768566 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
61768520 AAAAATTAAT
61768530 ATAAATAATATATAAAAGGG
1 ATAAATAATATATAAAAGGG
61768550 AT-AATAATATATAAAAG
1 ATAAATAATATATAAAAG
61768567 AGTTTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.27
Consensus pattern (20 bp):
ATAAATAATATATAAAAGGG
Found at i:61768688 original size:2 final size:2
Alignment explanation
Indices: 61768645--61768669 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
61768635 TTGAAAGGAA
61768645 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
61768670 GATTTAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:61771769 original size:577 final size:577
Alignment explanation
Indices: 61770718--61771876 Score: 2174
Period size: 577 Copynumber: 2.0 Consensus size: 577
61770708 CAAAAAGGAC
61770718 CCAACTATTTACATATTCAAAAGATTATCGGAAAACTAAGATATCCAAGATGTTTATGTAGAATC
1 CCAACTATTTACATATTCAAAAGATTATCGGAAAACTAAGATATCCAAGATGTTTATGTAGAATC
*
61770783 AAGAAATAGTTCATTTAGTTACAGATCAGAGTCATACAGACGGATAATAGATCAAGCCATAATCA
66 AAGAAATAGTTCATTTAGTTACAGATCAGAGTCATACAGACGGATAACAGATCAAGCCATAATCA
*
61770848 AATGCAAAATAAAACAAAATAAATACAATTATTTAATACCAACTGCAATATACCATCTCCGACCA
131 AATGCAAAATAAAACAAAATAAATACAATTATTTAATACCAACTACAATATACCATCTCCGACCA
*
61770913 ACCCAACATACTAAATAGGGTATTCATTATCCATCCAGCCCTACACACCACTCAGTGTCTGTCTG
196 ACCCAACACACTAAATAGGGTATTCATTATCCATCCAGCCCTACACACCACTCAGTGTCTGTCTG
* *
61770978 ACATGTTTTAAAGATTGCAAACTAGCTGCCAGATTAGTATACAGATACTAGGGATTTAACCACTT
261 ACATGTTTTAAAGATTGCAAACTAGCTGCCAGATTAGTATACAAATACTAGGGATTTAACCACTG
61771043 GTTCAAAATAGAATACTTCCTATTGATTCAATTCCCATCCAATGTATACACATACTTCACATGAC
326 GTTCAAAATAGAATACTTCCTATTGATTCAATTCCCATCCAATGTATACACATACTTCACATGAC
61771108 AATTAACACAGAGTTATATGCAAATATGCAGATATACTCGTGTTCGTATATAGTAGATAAATTCC
391 AATTAACACAGAGTTATATGCAAATATGCAGATATACTCGTGTTCGTATATAGTAGATAAATTCC
61771173 AATGATTTTTGTCAAACACAATACGCACATTGATAATCAGTATTCAAATTCTAAATCATAAAATA
456 AATGATTTTTGTCAAACACAATACGCACATTGATAATCAGTATTCAAATTCTAAATCATAAAATA
*
61771238 TCAATTTATGCAATCAAATTCAGTTCAAACGACTTTAGAGAAGGCTCGTATTTTACT
521 TCAATTTATGCAATCAAATTCAGTTCAAACGACTTCAGAGAAGGCTCGTATTTTACT
* *
61771295 CCAACTATTTACATATTCAAAATATTATTGGAAAACTAAGATATCCAAGATGTTTATGTAGAATC
1 CCAACTATTTACATATTCAAAAGATTATCGGAAAACTAAGATATCCAAGATGTTTATGTAGAATC
61771360 AAGAAATAGTTCATTTAGTTACAGATCAGAGTCATACAGACGGATAACAGATCAAGCCATAATCA
66 AAGAAATAGTTCATTTAGTTACAGATCAGAGTCATACAGACGGATAACAGATCAAGCCATAATCA
*
61771425 AATGCAAAATAGAACAAAATAAATACAATTATTTAATACCAACTACAATATACCATCTCCGACCA
131 AATGCAAAATAAAACAAAATAAATACAATTATTTAATACCAACTACAATATACCATCTCCGACCA
*
61771490 ATCCAACACACTAAATAGGGTATTCATTATCCATCCAGCCCTACACACCACTCAGTGTCTGTCTG
196 ACCCAACACACTAAATAGGGTATTCATTATCCATCCAGCCCTACACACCACTCAGTGTCTGTCTG
61771555 ACATGTTTTAAAGATTGCAAACTAGCTGCCAGATTAGTATACAAATACTAGGGATTTAACCACTG
261 ACATGTTTTAAAGATTGCAAACTAGCTGCCAGATTAGTATACAAATACTAGGGATTTAACCACTG
* *
61771620 GTTCAGAATAGAATACTTCCTCTTGATTCAATTCCCATCCAATGTATACACATACTTCACATGAC
326 GTTCAAAATAGAATACTTCCTATTGATTCAATTCCCATCCAATGTATACACATACTTCACATGAC
* * *
61771685 AATTAACACAGATTTATATGTAAATATGTAGATATACTCGTGTTCGTATATAGTAGATAAATTCC
391 AATTAACACAGAGTTATATGCAAATATGCAGATATACTCGTGTTCGTATATAGTAGATAAATTCC
*
61771750 AATGATTTTTGTCAAACACAATACGCACATTGATAATCAGTATTCAAATTCTAGATCATAAAATA
456 AATGATTTTTGTCAAACACAATACGCACATTGATAATCAGTATTCAAATTCTAAATCATAAAATA
61771815 TCAATTTATGCAATCAAATTCAGTTCAAACGACTTCAGAGAAGGCTCGTATTTTACT
521 TCAATTTATGCAATCAAATTCAGTTCAAACGACTTCAGAGAAGGCTCGTATTTTACT
61771872 CCAAC
1 CCAAC
61771877 GATGCTCGGT
Statistics
Matches: 566, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
577 566 1.00
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (577 bp):
CCAACTATTTACATATTCAAAAGATTATCGGAAAACTAAGATATCCAAGATGTTTATGTAGAATC
AAGAAATAGTTCATTTAGTTACAGATCAGAGTCATACAGACGGATAACAGATCAAGCCATAATCA
AATGCAAAATAAAACAAAATAAATACAATTATTTAATACCAACTACAATATACCATCTCCGACCA
ACCCAACACACTAAATAGGGTATTCATTATCCATCCAGCCCTACACACCACTCAGTGTCTGTCTG
ACATGTTTTAAAGATTGCAAACTAGCTGCCAGATTAGTATACAAATACTAGGGATTTAACCACTG
GTTCAAAATAGAATACTTCCTATTGATTCAATTCCCATCCAATGTATACACATACTTCACATGAC
AATTAACACAGAGTTATATGCAAATATGCAGATATACTCGTGTTCGTATATAGTAGATAAATTCC
AATGATTTTTGTCAAACACAATACGCACATTGATAATCAGTATTCAAATTCTAAATCATAAAATA
TCAATTTATGCAATCAAATTCAGTTCAAACGACTTCAGAGAAGGCTCGTATTTTACT
Found at i:61777119 original size:217 final size:221
Alignment explanation
Indices: 61776682--61777126 Score: 799
Period size: 217 Copynumber: 2.0 Consensus size: 221
61776672 AACTAAGTTT
*
61776682 TCTATTAAACTAAATAAATATTTTAAAATAATTGTTTTCAATAACTTTGATAACCCCACTAGGCC
1 TCTATTAAACTAAATAAATATTTTAAAATAATTGTTTTCAATAACTTCGATAACCCCACTAGGCC
61776747 ATCTCGGTGGCTGATGTTGTCTTTCAAATTTGGGTCTAACTTTTAGGCTGAGTTGAGGAGGTTAC
66 ATCTCGGTGGCTGATGTTGTCTTTCAAATTTGGGTCTAA----TA-GCTGAGTTGAGGAGGTTAC
61776812 AAATTTAGTATCTAACTACAAATATTTTAATTATATAAATATGAGTATTTGTTTAAATAATGGTT
126 AAATTTAGTATCTAACTACAAATATTTTAATTATATAAATATGAGTATTTGTTTAAATAATGGTT
61776877 AGCTTTATTTATCATTTACAACTCTAATGTG
191 AGCTTTATTTATCATTTACAACTCTAATGTG
61776908 TCTATTAAACTAAATAAATATTTTAAAATAATTGTTTTCAATAACTTCGATAACCCCACTAGGCC
1 TCTATTAAACTAAATAAATATTTTAAAATAATTGTTTTCAATAACTTCGATAACCCCACTAGGCC
61776973 ATCTCGGTGGCTGATGTTGTCTTTCAAATTTGGGTCT-A-A-CT-AGTTGAGGAGGTTACAAATT
66 ATCTCGGTGGCTGATGTTGTCTTTCAAATTTGGGTCTAATAGCTGAGTTGAGGAGGTTACAAATT
*
61777034 TAGTATCTAACTACAAATATTTTAATTATATAAATATGAGTATTTTTTTAAATAATGGTTAGCTT
131 TAGTATCTAACTACAAATATTTTAATTATATAAATATGAGTATTTGTTTAAATAATGGTTAGCTT
61777099 TATTTATCATTTACAACTCTAATGTG
196 TATTTATCATTTACAACTCTAATGTG
61777125 TC
1 TC
61777127 AATATGTACT
Statistics
Matches: 217, Mismatches: 2, Indels: 9
0.95 0.01 0.04
Matches are distributed among these distances:
217 112 0.52
218 2 0.01
220 1 0.00
225 1 0.00
226 101 0.47
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (221 bp):
TCTATTAAACTAAATAAATATTTTAAAATAATTGTTTTCAATAACTTCGATAACCCCACTAGGCC
ATCTCGGTGGCTGATGTTGTCTTTCAAATTTGGGTCTAATAGCTGAGTTGAGGAGGTTACAAATT
TAGTATCTAACTACAAATATTTTAATTATATAAATATGAGTATTTGTTTAAATAATGGTTAGCTT
TATTTATCATTTACAACTCTAATGTG
Found at i:61779470 original size:97 final size:93
Alignment explanation
Indices: 61779304--61779637 Score: 323
Period size: 97 Copynumber: 3.5 Consensus size: 93
61779294 AGTTTAAGGA
* * * ** ** *
61779304 TTTATTTATTAATTTATTTATTGTAATAAG-GATTTGGATTTAAGCAACAGTTGAGCGTACTGGA
1 TTTATTCA-TAATTTATTTCTTGTAATGAGAG-TTTGGATTTAAGCAGTAGCGGAACGTACTGGA
61779368 AACCTAAGGGACATGGTCCCTAAAATGGTAAAT
64 AACCT-AGGGACAT-G-CCCTAAAATGGTAAAT
* * * *
61779401 TTTATTTACTAATTTATTTCTTGTAATGAGAGTTTGGATTTCAGCAGT-GACGGAATGTACTAGA
1 TTTATTCA-TAATTTATTTCTTGTAATGAGAGTTTGGATTTAAGCAGTAG-CGGAACGTACTGGA
* * *
61779465 AACCTAGGAGGCATGCCCCTAAAATGATAAGT
64 AACCTAGG-GACATG-CCCTAAAATGGTAAAT
* * **
61779497 TTTATTCATGAATTTATTTCTTGTAAT-AAAGGTTTGGATTTAAGCAGTAGTGGGGCGTACTGGA
1 TTTATTCAT-AATTTATTTCTTGTAATGAGA-GTTTGGATTTAAGCAGTAGCGGAACGTACTGGA
*
61779561 AACTTAGTGGACATAGCCACTAAAATGGTAAAT
64 AACCTAG-GGACAT-GCC-CTAAAATGGTAAAT
*
61779594 TTTATTCATTAATTTATTTCTTGTAATGAGGGTTTGGATTTAAG
1 TTTATTCA-TAATTTATTTCTTGTAATGAGAGTTTGGATTTAAG
61779638 GCATATTTTA
Statistics
Matches: 197, Mismatches: 29, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
95 3 0.02
96 80 0.41
97 111 0.56
98 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.37
Consensus pattern (93 bp):
TTTATTCATAATTTATTTCTTGTAATGAGAGTTTGGATTTAAGCAGTAGCGGAACGTACTGGAAA
CCTAGGGACATGCCCTAAAATGGTAAAT
Found at i:61783297 original size:3 final size:3
Alignment explanation
Indices: 61783289--61783573 Score: 237
Period size: 3 Copynumber: 94.0 Consensus size: 3
61783279 TGTTTTATCA
61783289 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
61783337 TAT TAT TAT TAC TAT TAT AAT TA- TAT T-T TAT TTT TGT GT-T TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA-T
* * * *
61783381 TATT TATT TATT TAT TAAT TCAT TAA T-T TAT TAT TAT TAA CA- CAT
1 TA-T TA-T TA-T TAT T-AT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
61783426 TCT TAT TAT TTT TAT TAAT GTAT TAT TAT TAT TAT TAT TATT TGT TGT
1 TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT TAT TAT TA-T TAT TAT
* * * * *
61783474 T-C TAT TTT TAT TAC TAT TAT TAT TAC TA- TATT TAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
*
61783518 CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TACT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
61783563 TA- TAT TAT TAT
1 TAT TAT TAT TAT
61783574 ATTTTTACCC
Statistics
Matches: 237, Mismatches: 28, Indels: 34
0.79 0.09 0.11
Matches are distributed among these distances:
2 15 0.06
3 189 0.80
4 32 0.14
5 1 0.00
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:61783388 original size:8 final size:8
Alignment explanation
Indices: 61783375--61783413 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
61783365 TATTTTTGTG
*
61783375 TTTATTTA
1 TTTATTAA
*
61783383 TTTATTTA
1 TTTATTAA
61783391 TTTATTAA
1 TTTATTAA
*
61783399 TTCATTAA
1 TTTATTAA
61783407 TTTATTA
1 TTTATTA
61783414 TTATTAACAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTATTAA
Found at i:61783434 original size:23 final size:23
Alignment explanation
Indices: 61783408--61783465 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
61783398 ATTCATTAAT
*
61783408 TTATTATTATTAACACATTCTTA
1 TTATTATTATTAACACATTATTA
* ***
61783431 TTATTTTTATTAATGTATTATTA
1 TTATTATTATTAACACATTATTA
61783454 TTATTATTATTA
1 TTATTATTATTA
61783466 TTTGTTGTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (23 bp):
TTATTATTATTAACACATTATTA
Found at i:61783717 original size:15 final size:15
Alignment explanation
Indices: 61783697--61783731 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
61783687 TTATTATGTT
61783697 TATTATTACCATTAA
1 TATTATTACCATTAA
* *
61783712 TATTATTATCATTAC
1 TATTATTACCATTAA
61783727 TATTA
1 TATTA
61783732 CTATCAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.51
Consensus pattern (15 bp):
TATTATTACCATTAA
Found at i:61785266 original size:16 final size:16
Alignment explanation
Indices: 61785215--61785268 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
61785205 GAGCTCTTCC
* *
61785215 TTTCTCCC-CCTCTCC
1 TTTCTCCCTTCTCTCT
*
61785230 TTCCTCCCTTCTCTCT
1 TTTCTCCCTTCTCTCT
61785246 TTTCTCCCTTCTCT-T
1 TTTCTCCCTTCTCTCT
61785261 TCTTCTCC
1 T-TTCTCC
61785269 TTTTTCCTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
15 9 0.27
16 24 0.73
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTCTCCCTTCTCTCT
Found at i:61785778 original size:14 final size:15
Alignment explanation
Indices: 61785761--61785789 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
61785751 ATATATCTTA
61785761 ATATGTATAT-GTAT
1 ATATGTATATAGTAT
61785775 ATATGTATATAGTAT
1 ATATGTATATAGTAT
61785790 TATTGATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (15 bp):
ATATGTATATAGTAT
Found at i:61787548 original size:15 final size:16
Alignment explanation
Indices: 61787516--61787550 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
61787506 TATTTGGTTG
*
61787516 TTTTTTTAGTTTTCAA
1 TTTTTATAGTTTTCAA
61787532 TTTTTATAGTTTT-AA
1 TTTTTATAGTTTTCAA
61787547 TTTT
1 TTTT
61787551 GGTTTAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.20, C:0.03, G:0.06, T:0.71
Consensus pattern (16 bp):
TTTTTATAGTTTTCAA
Found at i:61788100 original size:26 final size:26
Alignment explanation
Indices: 61788063--61788198 Score: 220
Period size: 26 Copynumber: 5.2 Consensus size: 26
61788053 TGATACAAAT
*
61788063 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
61788089 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
61788115 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
61788141 TGATAATGGGTTAGGTAAATGCTT-CA
1 TGATAATGGGTTAGGTAAATG-TTCCA
*
61788167 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
61788193 TGATAA
1 TGATAA
61788199 GAATATCATG
Statistics
Matches: 103, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
25 2 0.02
26 99 0.96
27 2 0.02
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:61788120 original size:52 final size:52
Alignment explanation
Indices: 61788063--61788198 Score: 245
Period size: 52 Copynumber: 2.6 Consensus size: 52
61788053 TGATACAAAT
*
61788063 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGCTTCA
61788115 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGCTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGCTTCA
* *
61788167 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
61788199 GAATATCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 81 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGCTTCA
Found at i:61789298 original size:26 final size:26
Alignment explanation
Indices: 61789262--61789371 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
61789252 CATGAAATTC
61789262 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
61789288 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
61789314 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
61789340 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
61789366 TTATCA
1 TTATCA
61789372 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:61801770 original size:21 final size:20
Alignment explanation
Indices: 61801744--61801786 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
61801734 CATGTTTGAC
61801744 TGTTGTTATT-TACTGCATGCA
1 TGTTGTTATTAT-CTG-ATGCA
61801765 TGTTGTTATTATCTGATGCA
1 TGTTGTTATTATCTGATGCA
61801785 TG
1 TG
61801787 GGATTGGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 13 0.62
22 1 0.05
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.49
Consensus pattern (20 bp):
TGTTGTTATTATCTGATGCA
Found at i:61805876 original size:26 final size:26
Alignment explanation
Indices: 61805840--61805923 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
61805830 TGATACAAAT
61805840 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
61805866 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
61805892 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
61805918 TGATAA
1 TGATAA
61805924 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:61807432 original size:25 final size:26
Alignment explanation
Indices: 61807404--61807455 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
61807394 TTTACAGTTT
61807404 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
61807429 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
61807455 T
1 T
61807456 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:61811640 original size:26 final size:26
Alignment explanation
Indices: 61811604--61811687 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
61811594 TGATACAAAT
61811604 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
61811630 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
61811656 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
61811682 TGATAA
1 TGATAA
61811688 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:61813214 original size:25 final size:25
Alignment explanation
Indices: 61813166--61813214 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
61813156 ACAGTTTTAC
61813166 CCCTAGGAGATAAATTACCGAAATA
1 CCCTAGGAGATAAATTACCGAAATA
* *
61813191 CCCTAGG-GTTAAATTGACCTAAAT
1 CCCTAGGAGATAAATT-ACCGAAAT
61813215 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (25 bp):
CCCTAGGAGATAAATTACCGAAATA
Found at i:61814596 original size:31 final size:32
Alignment explanation
Indices: 61814556--61814624 Score: 97
Period size: 31 Copynumber: 2.2 Consensus size: 32
61814546 TTTTTTATCC
* *
61814556 AATTAGGTACTTGAACTTGA-TTTCTTGGTTCA
1 AATTAGGTACCTGAACTTGACTTT-TTGGTCCA
61814588 AATT-GGTACCTGAACTTGACTTTTTGGTCCA
1 AATTAGGTACCTGAACTTGACTTTTTGGTCCA
61814619 AATTAG
1 AATTAG
61814625 TGCTTACAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 25 0.76
32 8 0.24
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (32 bp):
AATTAGGTACCTGAACTTGACTTTTTGGTCCA
Found at i:61817032 original size:34 final size:35
Alignment explanation
Indices: 61816989--61817054 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
61816979 ACTTTTTGTA
61816989 TATATTATATTATATACA-TTATATTA-TATATTTG
1 TATATTATATTATATA-ATTTATATTACTATATTTG
61817023 TATATTATATTATATAATTTATATTACTATAT
1 TATATTATATTATATAATTTATATTACTATAT
61817055 ATTTTATTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
33 1 0.03
34 24 0.80
35 5 0.17
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (35 bp):
TATATTATATTATATAATTTATATTACTATATTTG
Found at i:61817094 original size:5 final size:5
Alignment explanation
Indices: 61816989--61817078 Score: 69
Period size: 5 Copynumber: 17.8 Consensus size: 5
61816979 ACTTTTTGTA
* *
61816989 TATAT TATAT TATA- TACAT TATAT TATA- TATTT GTATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT -TATAT TATAT TATAT
* * * *
61817038 AAT-T TATAT TACTAT ATATTT TATTT GTAAAT TATAT TATA
1 TATAT TATAT TA-TAT -TATAT TATAT -TATAT TATAT TATA
61817079 CACTATATAT
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
4 9 0.13
5 45 0.66
6 12 0.18
7 2 0.03
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:61818643 original size:26 final size:26
Alignment explanation
Indices: 61818608--61818673 Score: 105
Period size: 26 Copynumber: 2.5 Consensus size: 26
61818598 TATCACATTA
*
61818608 ATAAATAATTTAAAATCTATACAAAT
1 ATAAAAAATTTAAAATCTATACAAAT
61818634 ATAAAAAATTTAAAATCTATACAAAT
1 ATAAAAAATTTAAAATCTATACAAAT
*
61818660 ATTTAAAAATTTAA
1 A-TAAAAAATTTAA
61818674 TAAAAATCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
26 26 0.70
27 11 0.30
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (26 bp):
ATAAAAAATTTAAAATCTATACAAAT
Found at i:61819134 original size:5 final size:5
Alignment explanation
Indices: 61819119--61819156 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
61819109 TGTGTGTTCT
61819119 TTTTA -TTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
61819157 TTACAAATTG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:61825546 original size:26 final size:25
Alignment explanation
Indices: 61825508--61825568 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
61825498 TGTAAAAATC
*
61825508 ATAAAAAT-TATTTTTAAATAATTTA
1 ATAAAAATATATTTATAAA-AATTTA
*
61825533 ATAAAAATATATTTATAAAATTTTA
1 ATAAAAATATATTTATAAAAATTTA
*
61825558 A-AAATATATAT
1 ATAAAAATATAT
61825569 AATTATTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 9 0.28
25 14 0.44
26 9 0.28
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
ATAAAAATATATTTATAAAAATTTA
Found at i:61825547 original size:24 final size:23
Alignment explanation
Indices: 61825508--61825566 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 23
61825498 TGTAAAAATC
*
61825508 ATAAAAAT-TATTTTTAAATAATTT
1 ATAAAAATATATTTAT-AA-AATTT
61825532 AATAAAAATATATTTATAAAATTT
1 -ATAAAAATATATTTATAAAATTT
61825556 -TAAAAATATAT
1 ATAAAAATATAT
61825567 ATAATTATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
22 11 0.34
24 5 0.16
25 10 0.31
26 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
ATAAAAATATATTTATAAAATTT
Found at i:61825567 original size:24 final size:24
Alignment explanation
Indices: 61825509--61825568 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
61825499 GTAAAAATCA
61825509 TAAAAAT-TAT-TTTTAAATAATT
1 TAAAAATATATATTTTAAATAATT
* *
61825531 TAATAAAAATATATTTATAAA-ATTT
1 TAA-AAATATATATTT-TAAATAATT
61825556 TAAAAATATATAT
1 TAAAAATATATAT
61825569 AATTATTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
22 3 0.10
23 3 0.10
24 12 0.39
25 9 0.29
26 4 0.13
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
TAAAAATATATATTTTAAATAATT
Found at i:61827078 original size:17 final size:18
Alignment explanation
Indices: 61827047--61827080 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
61827037 TTTTATCATT
*
61827047 ATTTTTACTTTTAATTTC
1 ATTTTTACTTCTAATTTC
61827065 ATTTTTA-TTCTAATTT
1 ATTTTTACTTCTAATTT
61827081 AATCCCTGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTTTTACTTCTAATTTC
Found at i:61830869 original size:16 final size:14
Alignment explanation
Indices: 61830847--61830883 Score: 56
Period size: 16 Copynumber: 2.5 Consensus size: 14
61830837 TTTTTTTAAC
61830847 TTTTTTTCTTCCTTT
1 TTTTTTTCTT-CTTT
61830862 TATTTTTTCTTCTTT
1 T-TTTTTTCTTCTTT
61830877 TTTTTTT
1 TTTTTTT
61830884 GTGTGGAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
15 6 0.29
16 9 0.43
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTTCTTCTTT
Found at i:61852063 original size:13 final size:13
Alignment explanation
Indices: 61852045--61852071 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
61852035 TCTTGACAGG
61852045 GACACGCCCGTGT
1 GACACGCCCGTGT
61852058 GACACGCCCGTGT
1 GACACGCCCGTGT
61852071 G
1 G
61852072 CGATTGCTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:61853284 original size:21 final size:18
Alignment explanation
Indices: 61853258--61853303 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
61853248 AATGAATCCT
61853258 CCACCACCACTGTATCAC
1 CCACCACCACTGTATCAC
61853276 CCACCACCACTGTATCAC
1 CCACCACCACTGTATCAC
*
61853294 CCACCTCCAC
1 CCACCACCAC
61853304 CTCTCATGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.26, C:0.54, G:0.04, T:0.15
Consensus pattern (18 bp):
CCACCACCACTGTATCAC
Found at i:61863492 original size:14 final size:15
Alignment explanation
Indices: 61863473--61863502 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
61863463 AAGTCTTAAG
61863473 AGAAAAA-AAATAAA
1 AGAAAAAGAAATAAA
61863487 AGAAAAAGAAATAAA
1 AGAAAAAGAAATAAA
61863502 A
1 A
61863503 TATATATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (15 bp):
AGAAAAAGAAATAAA
Found at i:61865114 original size:3 final size:3
Alignment explanation
Indices: 61865106--61865181 Score: 134
Period size: 3 Copynumber: 25.3 Consensus size: 3
61865096 AATGCATAAC
* *
61865106 ATA ATA ATA CTA ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
61865154 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
61865182 CAACAACAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:61869948 original size:30 final size:30
Alignment explanation
Indices: 61869913--61869969 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
61869903 TACAACCATG
61869913 ACACACG-GACGTGTGGCCTACCCGTGTTTC
1 ACACACGAG-CGTGTGGCCTACCCGTGTTTC
**
61869943 ACACACGAGCGTGTGGGTTACCCGTGT
1 ACACACGAGCGTGTGGCCTACCCGTGT
61869970 GGAAGTGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.23
Consensus pattern (30 bp):
ACACACGAGCGTGTGGCCTACCCGTGTTTC
Found at i:61871752 original size:11 final size:11
Alignment explanation
Indices: 61871736--61871760 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
61871726 TTATATATAC
61871736 TAATAAAATAA
1 TAATAAAATAA
61871747 TAATAAAATAA
1 TAATAAAATAA
61871758 TAA
1 TAA
61871761 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:61872065 original size:31 final size:30
Alignment explanation
Indices: 61872030--61872088 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
61872020 CACCCTTAAA
*
61872030 ATATTTGCACTATT-AGCCCTTCAAATTTTTC
1 ATATTTACACT-TTAAGCCC-TCAAATTTTTC
*
61872061 ATATTTACACTTTAATCCCTCAAATTTT
1 ATATTTACACTTTAAGCCCTCAAATTTT
61872089 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.29, C:0.22, G:0.03, T:0.46
Consensus pattern (30 bp):
ATATTTACACTTTAAGCCCTCAAATTTTTC
Found at i:61872955 original size:42 final size:43
Alignment explanation
Indices: 61872853--61873003 Score: 164
Period size: 42 Copynumber: 3.5 Consensus size: 43
61872843 TCTGAGATAT
** * * * *
61872853 CGTGTAAGACTGTGTCTGGGACACAGTCCTCGAT-TTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATACTGA-A-TTA
* *
61872897 CGTGTAAGACCATGTCTGGGACATAGGCATCG-TATCTG-ATTG
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATA-CTGAATTA
*
61872939 CGTGTAAGACCCTGTCTGGGACAGAGGCATCGATACTGAATTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATACTGAATTA
*
61872982 CGTGTAAGACCATGTCCGGGAC
1 CGTGTAAGACCATGTCTGGGAC
61873004 GTCAACATTT
Statistics
Matches: 91, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 35 0.38
43 27 0.30
44 27 0.30
45 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACAGAGGCATCGATACTGAATTA
Found at i:61881367 original size:44 final size:44
Alignment explanation
Indices: 61881303--61881727 Score: 373
Period size: 44 Copynumber: 9.5 Consensus size: 44
61881293 TGAAGAATTG
* * *
61881303 TATCTCCTTGAAATTGCAGTGGAGCAGATTAAAGCCACAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCT
* * * *
61881347 TATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCAAATAT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAAATCT
* * * * *
61881392 TATCTCTCTGAAGTTGTAGTAGAGCAGATTAAAGCTATAAACCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCT
** * * *
61881436 TATCTCCCTGGGGTTGCAGTGGAGCAGGTTAAAGTTACAAACCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCT
* * * * * * * *
61881480 TATCCCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTTCCAAATTT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCT
* * *
61881524 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCT
* * * * *
61881568 TATCTCCTTGAAGTTGCAATGGAGCAAATTAAAGATAGCGAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAAATCT
* * *
61881613 TATTTCCCTGAAGTTGAAGTGGAACAGATTAAAGCTGCAAACCGCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT----A---CAAATCT
* * * **
61881664 TATCTTCCTGGAGTTGTAGTGGAGCAGATTAAAGCTACAAGCCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCT
* * *
61881708 AATCTCCCTAAAGTTACAGT
1 TATCTCCCTGAAGTTGCAGT
61881728 AAAGTAGATC
Statistics
Matches: 307, Mismatches: 66, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
44 195 0.64
45 72 0.23
47 1 0.00
49 1 0.00
51 38 0.12
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCT
Found at i:61882030 original size:18 final size:19
Alignment explanation
Indices: 61881989--61882025 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
61881979 CCAAAATTAC
* *
61881989 AAACCCAAAAAAGCCTAAA
1 AAACCAAAAAAACCCTAAA
61882008 AAACCAAAAAAACCCTAA
1 AAACCAAAAAAACCCTAA
61882026 CAACCCGTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.27, G:0.03, T:0.05
Consensus pattern (19 bp):
AAACCAAAAAAACCCTAAA
Found at i:61883364 original size:4 final size:4
Alignment explanation
Indices: 61883355--61883399 Score: 56
Period size: 4 Copynumber: 11.2 Consensus size: 4
61883345 CGCAAATTTC
* *
61883355 TTAT TTAT TTAT TTAT TTATT TTGT TTAG TTAT TTA- TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTA-T TTAT TTAT TTAT TTAT TTAT TTAT T
61883400 AATTCTTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
3 3 0.09
4 29 0.83
5 3 0.09
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:61883382 original size:21 final size:20
Alignment explanation
Indices: 61883358--61883396 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
61883348 AAATTTCTTA
*
61883358 TTTATTTATTTATTTATTTTG
1 TTTAGTTATTTA-TTATTTTG
61883379 TTTAGTTATTTATTATTT
1 TTTAGTTATTTATTATTT
61883397 ATTAATTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTAGTTATTTATTATTTTG
Found at i:61898015 original size:20 final size:20
Alignment explanation
Indices: 61897954--61898019 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
61897944 CCAAAAAAAG
*
61897954 AAAAAAGAAAAACCTAACCC
1 AAAAAAAAAAAACCTAACCC
** *
61897974 AAAAAAAAAAAGA-AGAA--G
1 AAAAAAAAAAA-ACCTAACCC
61897992 AAAAAAAAAAAACCTAACCC
1 AAAAAAAAAAAACCTAACCC
61898012 AAAAAAAA
1 AAAAAAAA
61898020 TAATAAAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
17 1 0.03
18 13 0.37
20 20 0.57
21 1 0.03
ACGTcount: A:0.76, C:0.15, G:0.06, T:0.03
Consensus pattern (20 bp):
AAAAAAAAAAAACCTAACCC
Found at i:61898636 original size:23 final size:23
Alignment explanation
Indices: 61898599--61898730 Score: 63
Period size: 25 Copynumber: 5.5 Consensus size: 23
61898589 CCTTTTTTGT
61898599 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
61898622 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
** *
61898644 TATTAGGTATATT-TTAAATTTTA
1 TATTATATATATTCTT-AATATTA
* * *
61898667 TATTACGTATATATATATTTTATACTA
1 TATTA--TATATAT-T-CTTAATATTA
* *
61898694 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
* *
61898719 TATGATTTATAT
1 TATTATATATAT
61898731 ATATATATAT
Statistics
Matches: 80, Mismatches: 20, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
21 2 0.03
22 15 0.19
23 19 0.24
24 4 0.05
25 29 0.36
26 1 0.01
27 8 0.10
28 2 0.03
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:61898681 original size:2 final size:2
Alignment explanation
Indices: 61898674--61898750 Score: 54
Period size: 2 Copynumber: 39.5 Consensus size: 2
61898664 TTATATTACG
* * * * *
61898674 TA TA TA TA TA T- TT TA TA CTA T- TT TA TG TA TA TA TC TT TA -A
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
*
61898714 TA T- TA TA TGA TT TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA T
61898751 TTTTTTTACA
Statistics
Matches: 60, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
1 4 0.07
2 52 0.87
3 4 0.07
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (2 bp):
TA
Found at i:61898704 original size:25 final size:25
Alignment explanation
Indices: 61898676--61898734 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
61898666 ATATTACGTA
* * *
61898676 TATATATATTTTATACTATTTTATG
1 TATATATATTTAATACTATATGATG
* * *
61898701 TATATATCTTTAATATTATATGATT
1 TATATATATTTAATACTATATGATG
61898726 TATATATAT
1 TATATATAT
61898735 ATATATATAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (25 bp):
TATATATATTTAATACTATATGATG
Found at i:61898796 original size:22 final size:24
Alignment explanation
Indices: 61898768--61898826 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
61898758 ACATGTTATC
61898768 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
61898790 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
61898815 TTATGTACATAT
1 TTATGTATATAT
61898827 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:61898816 original size:25 final size:25
Alignment explanation
Indices: 61898784--61898832 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
61898774 ATATATCTTA
**
61898784 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
61898809 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
61898833 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:61899011 original size:16 final size:15
Alignment explanation
Indices: 61898987--61899034 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
61898977 TAATTATTAT
*
61898987 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
61899003 TATTTTAATATTTTA
1 TATTTTAATATTTTA
61899018 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
61899034 T
1 T
61899035 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:61899022 original size:7 final size:8
Alignment explanation
Indices: 61898987--61899038 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
61898977 TAATTATTAT
*
61898987 TATTCTAA
1 TATTTTAA
*
61898995 TATTTTGA
1 TATTTTAA
61899003 TATTTTAA
1 TATTTTAA
61899011 TATTTT-A
1 TATTTTAA
61899018 TATTTTATA
1 TATTTTA-A
*
61899027 TATTTTAT
1 TATTTTAA
61899035 TATT
1 TATT
61899039 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:61905915 original size:70 final size:71
Alignment explanation
Indices: 61905841--61905982 Score: 225
Period size: 72 Copynumber: 2.0 Consensus size: 71
61905831 TTTTTCAGAA
* *
61905841 TCAACTCATATTGCTAGAGGT-AGTTGAGCCTC-GGGCACGCTGAGGTATTTTCAATTTTTGTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGT-T
*
61905904 TTTAATT
65 TTCAATT
*
61905911 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTT
61905976 TCAATT
66 TCAATT
61905982 T
1 T
61905983 ACGTTGTTCA
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
70 20 0.30
71 19 0.29
72 27 0.41
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.39
Consensus pattern (71 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTT
TCAATT
Found at i:61906082 original size:140 final size:140
Alignment explanation
Indices: 61905915--61906402 Score: 888
Period size: 140 Copynumber: 3.5 Consensus size: 140
61905905 TTAATTTCAA
61905915 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
61905980 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
61906045 TCAAAATCAG
131 TCAAAATCAG
* *
61906055 CTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
61906120 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
61906185 TCAAAATCAG
131 TCAAAATCAG
61906195 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
61906260 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
61906325 TCAAAATCAG
131 TCAAAATCAG
*
61906335 CTAATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
61906399 TCAA
62 TCAA
61906403 AAAAAAAATT
Statistics
Matches: 337, Mismatches: 7, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
139 2 0.01
140 306 0.91
142 23 0.07
143 6 0.02
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:61906258 original size:13 final size:13
Alignment explanation
Indices: 61906240--61906273 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
61906230 CGCTGAGGTA
*
61906240 TTTTCAATTTCTG
1 TTTTCAATTTATG
61906253 TTTTCAATTTATG
1 TTTTCAATTTATG
61906266 TTGTTCAA
1 TT-TTCAA
61906274 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:61906441 original size:81 final size:72
Alignment explanation
Indices: 61906322--61906547 Score: 258
Period size: 72 Copynumber: 3.0 Consensus size: 72
61906312 AATTTCTACT
* * ** * * *
61906322 TTTTCAAAA-TCAGCTAATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATT
61906385 TCAATTTCTG
63 TCAATTTCTG
*
61906395 TCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
61906460 AATTTCAATTTCTG
59 AATTTCAATTTCTG
* *
61906474 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
61906539 ATTTCTG
66 ATTTCTG
61906546 TT
1 TT
61906548 CAAAATGAGT
Statistics
Matches: 135, Mismatches: 9, Indels: 19
0.83 0.06 0.12
Matches are distributed among these distances:
72 68 0.50
73 1 0.01
74 4 0.03
78 4 0.03
79 24 0.18
80 4 0.03
81 29 0.21
82 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTCTG
Found at i:61906520 original size:72 final size:72
Alignment explanation
Indices: 61906407--61906547 Score: 273
Period size: 72 Copynumber: 2.0 Consensus size: 72
61906397 TTTCAAAAAA
*
61906407 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATTTC
61906472 TGTTTTC
66 TGTTTTC
61906479 AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATTTC
61906544 TGTT
66 TGTT
61906548 CAAAATGAGT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:61906616 original size:14 final size:14
Alignment explanation
Indices: 61906585--61906618 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
61906575 GCCGAGGTAT
*
61906585 TTTCAATTTCTATT
1 TTTCAATTTCTATC
*
61906599 TTTCAATTTCTGTC
1 TTTCAATTTCTATC
61906613 TTTCAA
1 TTTCAA
61906619 AAAAAAAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.18, G:0.03, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTATC
Found at i:61906793 original size:151 final size:149
Alignment explanation
Indices: 61906621--61906973 Score: 496
Period size: 151 Copynumber: 2.3 Consensus size: 149
61906611 TCTTTCAAAA
* * *
61906621 AAAAAAACATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTT
1 AAAAAAA-ATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAG-TCACACACTGAGGTA--TTG
* *
61906686 TCAA-TT-TATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCAGGACACGC
62 TCAATTTCTATGTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
61906749 TGAGGTATTTTCAATTTCTGTTGT
126 TGAGGTATTTTCAATTTCTGTTGT
* ** *
61906773 CAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTC-GGGACACGCTGAGGTATTGTCAA
1 AAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGTCACACACTGAGGTATTGTCAA
*
61906837 TTTTTCGTATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
66 --TTTC-TATGTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
*
61906902 AGGTATTTTTAATTTCTGTTGT
128 AGGTATTTTCAATTTCTGTTGT
*
61906924 AAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
1 AAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCA-GTCACAC
61906974 GTCAAGTGAG
Statistics
Matches: 179, Mismatches: 15, Indels: 13
0.86 0.07 0.06
Matches are distributed among these distances:
147 6 0.03
149 12 0.07
150 3 0.02
151 140 0.78
152 13 0.07
153 5 0.03
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (149 bp):
AAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGTCACACACTGAGGTATTGTCAA
TTTCTATGTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TATTTTCAATTTCTGTTGT
Found at i:61906794 original size:74 final size:74
Alignment explanation
Indices: 61906622--61906967 Score: 462
Period size: 74 Copynumber: 4.6 Consensus size: 74
61906612 CTTTCAAAAA
* * *
61906622 AAAAAACATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTT
1 AAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA--TTTT
* *
61906687 CAATTTAT-TTTTC
61 CAATTTCTGTTGTC
* *
61906700 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
61906765 TCTGTTGTC
66 TCTGTTGTC
* * *
61906774 AAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
*
61906839 TTTCGTATGTTTC
66 TCT-GT-TG--TC
*
61906852 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
*
61906916 TCTGTTGTA
66 TCTGTTGTC
* *
61906925 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGG
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
61906968 TCACACGTCA
Statistics
Matches: 241, Mismatches: 21, Indels: 16
0.87 0.08 0.06
Matches are distributed among these distances:
73 12 0.05
74 106 0.44
75 16 0.07
76 4 0.02
77 95 0.39
78 8 0.03
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (74 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
TCTGTTGTC
Found at i:61907655 original size:31 final size:34
Alignment explanation
Indices: 61907620--61907693 Score: 114
Period size: 36 Copynumber: 2.1 Consensus size: 34
61907610 TAAGCCCCCC
61907620 AAAAAA-AAGAAAAAAGAAAAACCTAACCCAAAAAA
1 AAAAAAGAAGAAAAAA-AAAAACCTAACCC-AAAAA
61907655 AAAAGAAGAAGAAAAAAAAAAACCTAACCCAAAAA
1 AAAA-AAGAAGAAAAAAAAAAACCTAACCCAAAAA
61907690 AAAA
1 AAAA
61907694 TAATAAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
35 13 0.35
36 15 0.41
37 9 0.24
ACGTcount: A:0.77, C:0.14, G:0.07, T:0.03
Consensus pattern (34 bp):
AAAAAAGAAGAAAAAAAAAAACCTAACCCAAAAA
Found at i:61907658 original size:19 final size:19
Alignment explanation
Indices: 61907629--61907693 Score: 64
Period size: 19 Copynumber: 3.5 Consensus size: 19
61907619 CAAAAAAAAG
61907629 AAAAAAGAAAAACCTAACCC
1 AAAAAA-AAAAACCTAACCC
** *
61907649 AAAAAAAAAAGA-AGAA--G
1 AAAAAAAAAA-ACCTAACCC
61907666 AAAAAAAAAAACCTAACCC
1 AAAAAAAAAAACCTAACCC
61907685 AAAAAAAAA
1 AAAAAAAAA
61907694 TAATAAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
16 1 0.03
17 12 0.34
19 15 0.43
20 7 0.20
ACGTcount: A:0.75, C:0.15, G:0.06, T:0.03
Consensus pattern (19 bp):
AAAAAAAAAAACCTAACCC
Found at i:61908310 original size:23 final size:23
Alignment explanation
Indices: 61908273--61908404 Score: 63
Period size: 25 Copynumber: 5.5 Consensus size: 23
61908263 CCTTTTTTGT
61908273 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
61908296 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
** *
61908318 TATTAGGTATATT-TTAAATTTTA
1 TATTATATATATTCTT-AATATTA
* * *
61908341 TATTACGTATATATATATTTTATACTA
1 TATTA--TATATAT-T-CTTAATATTA
* *
61908368 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
* *
61908393 TATGATTTATAT
1 TATTATATATAT
61908405 ATATATATAT
Statistics
Matches: 80, Mismatches: 20, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
21 2 0.03
22 15 0.19
23 19 0.24
24 4 0.05
25 29 0.36
26 1 0.01
27 8 0.10
28 2 0.03
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Done.