Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr09 85040211 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 85040211 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Warning! 160 characters in sequence are not A, C, G, or T File 214 of 292 Found at i:62991542 original size:26 final size:27 Alignment explanation
Indices: 62991508--62991571 Score: 73 Period size: 26 Copynumber: 2.5 Consensus size: 27 62991498 TATTTTTTTT 62991508 TTATA-TATTATTCA-TACTATCA-TTA 1 TTATATTATTATTCACTACTA-CATTTA * 62991533 TTATATTATTA-TCACTATTACATTTA 1 TTATATTATTATTCACTACTACATTTA * 62991559 TTATATTAGTATT 1 TTATATTATTATT 62991572 ATTATTGCTA Statistics Matches: 33, Mismatches: 2, Indels: 6 0.80 0.05 0.15 Matches are distributed among these distances: 25 10 0.30 26 22 0.67 27 1 0.03 ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55 Consensus pattern (27 bp): TTATATTATTATTCACTACTACATTTA Found at i:62994944 original size:2 final size:2 Alignment explanation
Indices: 62994937--62994975 Score: 78 Period size: 2 Copynumber: 19.5 Consensus size: 2 62994927 ACATTTGTTT 62994937 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 62994976 TTATCTACGT Statistics Matches: 37, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 37 1.00 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (2 bp): TA Found at i:63007889 original size:163 final size:163 Alignment explanation
Indices: 63007610--63008232 Score: 673 Period size: 163 Copynumber: 3.7 Consensus size: 163 63007600 ATTTTGTTTC * * * * 63007610 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG-CAC--GCTGAAGTATTTTCAAT 1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTCACATGCCGAGGTATTTTCAAA * * 63007672 TTCTATTTTTTAATTTAATTTCTATTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGC 66 TTC----TGTT--TTTAATTTCTA-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC 63007737 CTCAGGACACGCTGAGGTATTTTCAAAATCTGCTTTTCAA 124 CTCAGGACACGCTGAGGTATTTTCAAAATCTGCTTTTCAA * * 63007777 AAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTC-GGGTCACATGCCGAGGTATTTTCAAA 1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTCACATGCCGAGGTATTTTCAAA 63007841 TTCTGTTTTTAATTTCTATTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG 66 TTCTGTTTTTAATTTCTATTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG 63007906 ACACGCTGAGGTATTTTCAAAATCTGCTTTTCAA 130 ACACGCTGAGGTATTTTCAAAATCTGCTTTTCAA * *** * 63007940 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAG-CTCAAAATCACATGCCAAGGTATTTTCAAA 1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTCACATGCCGAGG-----T---A * * 63008004 TGCTGTCTTTCAAATTCTGTTTTTAATTTATACTTTTCAAAAATCAACTCATATTGCGAGAAGTG 58 -----T-TTTCAAATTCTGTTTTTAATTTCTA-TTTTCAAAAATCAACTCATATTGCGAGAGGTG * * ** 63008069 AGTTGAGCCTTAGGACACGCTGATGTATTTTCAATTTCTG-TTTGTC-A 116 AGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAATCTGCTTT-TCAA ** ** 63008116 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGGTCACATGTTGAGGTATTTTCAAA 1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTCACATGCCGAGGTATTTTCAAA * * 63008180 GTT-TGCTTTTAAGTTTC-A-----AAACAACCAACTCATATTGCGAGAGGTGAGTTGAG 66 -TTCTGTTTTTAA-TTTCTATTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAG 63008233 TCTTGGCTCA Statistics Matches: 397, Mismatches: 34, Indels: 60 0.81 0.07 0.12 Matches are distributed among these distances: 156 3 0.01 157 29 0.07 162 23 0.06 163 135 0.34 165 3 0.01 166 3 0.01 167 38 0.10 168 2 0.01 169 17 0.04 171 2 0.01 176 46 0.12 177 92 0.23 178 4 0.01 ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34 Consensus pattern (163 bp): AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTCACATGCCGAGGTATTTTCAAA TTCTGTTTTTAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA CACGCTGAGGTATTTTCAAAATCTGCTTTTCAA Found at i:63008273 original size:83 final size:76 Alignment explanation
Indices: 63008042--63008271 Score: 227 Period size: 83 Copynumber: 2.9 Consensus size: 76 63008032 TATACTTTTC * * 63008042 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTAGGACAC-GCTGATGTATTTTCAATTT 1 AAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTT-GGTCACTGCTGA-GTATTTTCAATTT 63008106 CTG-TTT--GTCA 64 CTGTTTTAAGTCA * * * * * 63008116 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCACATGTTGAGGTATTTTCAAAG 1 AAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGTCAC-TGCTGA-GTATTTTC-AAT 63008181 TT-TGCTTTTAAGTTTCA 62 TTCTG-TTTTAAG--TCA * * 63008198 AAACAACCAACTCATATTGCGAGAGGTGAGTTGAGTCTTGGCTCACGTGCTGAGCTATTTTCAAT 1 AAA-AACCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGG-TCAC-TGCTGAG-TATTTTCAAT 63008263 TTCTGTTTT 62 TTCTGTTTT 63008272 TAATGTCTGT Statistics Matches: 128, Mismatches: 14, Indels: 20 0.79 0.09 0.12 Matches are distributed among these distances: 74 41 0.32 76 14 0.11 77 4 0.03 78 3 0.02 80 1 0.01 82 17 0.13 83 48 0.38 ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34 Consensus pattern (76 bp): AAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGTCACTGCTGAGTATTTTCAATTTCT GTTTTAAGTCA Found at i:63010232 original size:2 final size:2 Alignment explanation
Indices: 63010225--63010259 Score: 70 Period size: 2 Copynumber: 17.5 Consensus size: 2 63010215 TACATTTGTT 63010225 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 63010260 TTATCTACGT Statistics Matches: 33, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 33 1.00 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (2 bp): TA Found at i:63010969 original size:2 final size:2 Alignment explanation
Indices: 63010962--63010990 Score: 58 Period size: 2 Copynumber: 14.5 Consensus size: 2 63010952 TATTACTATT 63010962 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 63010991 TGGCATACAT Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 27 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:63011017 original size:3 final size:3 Alignment explanation
Indices: 63011009--63011038 Score: 60 Period size: 3 Copynumber: 10.0 Consensus size: 3 63010999 ATATTCTTAA 63011009 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT 1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT 63011039 ATTCATTGTT Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 27 1.00 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (3 bp): TAT Found at i:63014295 original size:23 final size:23 Alignment explanation
Indices: 63014269--63014313 Score: 56 Period size: 23 Copynumber: 2.0 Consensus size: 23 63014259 TGAGTATGTG * 63014269 ATGACGTTATCTT-ATAAATATGC 1 ATGAAGTTATCTTGA-AAATATGC * 63014292 ATGAATTTATCTTGAAAATATG 1 ATGAAGTTATCTTGAAAATATG 63014314 TTGAATTGGT Statistics Matches: 19, Mismatches: 2, Indels: 2 0.83 0.09 0.09 Matches are distributed among these distances: 23 18 0.95 24 1 0.05 ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40 Consensus pattern (23 bp): ATGAAGTTATCTTGAAAATATGC Found at i:63015830 original size:49 final size:49 Alignment explanation
Indices: 63015766--63015940 Score: 251 Period size: 49 Copynumber: 3.5 Consensus size: 49 63015756 CTGGTACGCA * 63015766 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG 1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG * * * * * 63015815 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA 1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCAGGTACACG ** * 63015866 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACG 1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG 63015915 TAGTAGCCTGCACTTAGTACTACACA 1 TAGTAGCCTGCACTTAGTACTACACA 63015941 CGTGACCTCA Statistics Matches: 110, Mismatches: 14, Indels: 4 0.86 0.11 0.03 Matches are distributed among these distances: 49 64 0.58 50 6 0.05 51 40 0.36 ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25 Consensus pattern (49 bp): TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG Found at i:63015877 original size:51 final size:49 Alignment explanation
Indices: 63015752--63015947 Score: 248 Period size: 49 Copynumber: 4.0 Consensus size: 49 63015742 GTAGCCGAAG * * 63015752 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA 1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA * * * * * 63015801 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA 1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA * * * * 63015851 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA 1 -CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA * * * 63015901 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC 1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC 63015948 TCACAATAGC Statistics Matches: 125, Mismatches: 20, Indels: 4 0.84 0.13 0.03 Matches are distributed among these distances: 49 79 0.63 50 6 0.05 51 40 0.32 ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24 Consensus pattern (49 bp): CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA Found at i:63015920 original size:100 final size:100 Alignment explanation
Indices: 63015747--63015945 Score: 353 Period size: 100 Copynumber: 2.0 Consensus size: 100 63015737 CACTTGTAGC * ** 63015747 CGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTAC 1 CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTAC 63015812 ACGTAGTAGCCTGCACTTAGTACTACACACGTGAT 66 ACGTAGTAGCCTGCACTTAGTACTACACACGTGAT * * 63015847 CGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTAC 1 CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTAC 63015912 ACGTAGTAGCCTGCACTTAGTACTACACACGTGA 66 ACGTAGTAGCCTGCACTTAGTACTACACACGTGA 63015946 CCTCACAATA Statistics Matches: 94, Mismatches: 5, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 100 94 1.00 ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24 Consensus pattern (100 bp): CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTAC ACGTAGTAGCCTGCACTTAGTACTACACACGTGAT Found at i:63019000 original size:21 final size:21 Alignment explanation
Indices: 63018974--63019022 Score: 57 Period size: 21 Copynumber: 2.3 Consensus size: 21 63018964 AATTTGACAC 63018974 AAATAAATAATG--AATATATTT 1 AAATAAA-AATGACAATAT-TTT * 63018995 AAATAAAAATTACAATATTTT 1 AAATAAAAATGACAATATTTT 63019016 AAATAAA 1 AAATAAA 63019023 CTAACGGCCA Statistics Matches: 25, Mismatches: 1, Indels: 4 0.83 0.03 0.13 Matches are distributed among these distances: 20 3 0.12 21 17 0.68 22 5 0.20 ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35 Consensus pattern (21 bp): AAATAAAAATGACAATATTTT Found at i:63019583 original size:33 final size:33 Alignment explanation
Indices: 63019542--63019611 Score: 133 Period size: 33 Copynumber: 2.2 Consensus size: 33 63019532 AAAAAAAAAG 63019542 AATA-CTTGAATTTAAATTCTATGAAATATAAT 1 AATATCTTGAATTTAAATTCTATGAAATATAAT 63019574 AATATCTTGAATTTAAATTCTATGAAATATAAT 1 AATATCTTGAATTTAAATTCTATGAAATATAAT 63019607 AATAT 1 AATAT 63019612 AGGGTTCAAT Statistics Matches: 37, Mismatches: 0, Indels: 1 0.97 0.00 0.03 Matches are distributed among these distances: 32 4 0.11 33 33 0.89 ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41 Consensus pattern (33 bp): AATATCTTGAATTTAAATTCTATGAAATATAAT Found at i:63026927 original size:23 final size:23 Alignment explanation
Indices: 63026901--63026979 Score: 81 Period size: 23 Copynumber: 3.5 Consensus size: 23 63026891 TATATATTAA 63026901 ATATCTTTTTTTATAACTTAGTC 1 ATATCTTTTTTTATAACTTAGTC * * *** 63026924 ATAT-ATTTTTTATTA-TATAAAA 1 ATATCTTTTTTTATAACT-TAGTC 63026946 ATATCTTTTTTTATAACTTAGTC 1 ATATCTTTTTTTATAACTTAGTC * 63026969 ATATATTTTTT 1 ATATCTTTTTT 63026980 ATTATATTAT Statistics Matches: 42, Mismatches: 11, Indels: 6 0.71 0.19 0.10 Matches are distributed among these distances: 21 1 0.02 22 15 0.36 23 25 0.60 24 1 0.02 ACGTcount: A:0.32, C:0.08, G:0.03, T:0.58 Consensus pattern (23 bp): ATATCTTTTTTTATAACTTAGTC Found at i:63026935 original size:22 final size:22 Alignment explanation
Indices: 63026907--63026981 Score: 80 Period size: 22 Copynumber: 3.4 Consensus size: 22 63026897 TTAAATATCT 63026907 TTTTTTATAACTTAGTCATATA 1 TTTTTTATAACTTAGTCATATA * *** * 63026929 TTTTTTATTA-TATAAAAATATCT 1 TTTTTTATAACT-TAGTCATAT-A 63026952 TTTTTTATAACTTAGTCATATA 1 TTTTTTATAACTTAGTCATATA 63026974 TTTTTTAT 1 TTTTTTAT 63026982 TATATTATAT Statistics Matches: 40, Mismatches: 10, Indels: 6 0.71 0.18 0.11 Matches are distributed among these distances: 21 1 0.03 22 23 0.57 23 15 0.38 24 1 0.03 ACGTcount: A:0.32, C:0.07, G:0.03, T:0.59 Consensus pattern (22 bp): TTTTTTATAACTTAGTCATATA Found at i:63026961 original size:45 final size:45 Alignment explanation
Indices: 63026899--63026986 Score: 176 Period size: 45 Copynumber: 2.0 Consensus size: 45 63026889 AATATATATT 63026899 AAATATCTTTTTTTATAACTTAGTCATATATTTTTTATTATATAA 1 AAATATCTTTTTTTATAACTTAGTCATATATTTTTTATTATATAA 63026944 AAATATCTTTTTTTATAACTTAGTCATATATTTTTTATTATAT 1 AAATATCTTTTTTTATAACTTAGTCATATATTTTTTATTATAT 63026987 TATATGTTAT Statistics Matches: 43, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 45 43 1.00 ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57 Consensus pattern (45 bp): AAATATCTTTTTTTATAACTTAGTCATATATTTTTTATTATATAA Found at i:63035318 original size:15 final size:15 Alignment explanation
Indices: 63035298--63035330 Score: 57 Period size: 15 Copynumber: 2.2 Consensus size: 15 63035288 TTTCTCCTCA * 63035298 GCTGGCTTTTTCTCG 1 GCTGGCTTCTTCTCG 63035313 GCTGGCTTCTTCTCG 1 GCTGGCTTCTTCTCG 63035328 GCT 1 GCT 63035331 TTGGGTGCCA Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 15 17 1.00 ACGTcount: A:0.00, C:0.30, G:0.27, T:0.42 Consensus pattern (15 bp): GCTGGCTTCTTCTCG Found at i:63037675 original size:154 final size:154 Alignment explanation
Indices: 63037395--63037705 Score: 559 Period size: 154 Copynumber: 2.0 Consensus size: 154 63037385 AAAAATGCAT * * 63037395 AAAAACTTTGTTGAGTTGGGAATCGATTTCTGGATGTTGAAACTTTGCTTGATCTATCGAGGATC 1 AAAAACTTTGTTGAGTTGGGAATCGATTTCTAGATGTTGAAACTCTGCTTGATCTATCGAGGATC * * 63037460 TACTGTACCTATGCACGAAGAAAACAAATTCTACGCTGAGTAATGAAGCTCGGAGGTATTTCTAT 66 TACTGTACCTATGCACGAAGAAAACAAATTCTACGCTGAGCAATGAAGCTCAGAGGTATTTCTAT 63037525 AATTTAAGCAATAAAATGCAAGTA 131 AATTTAAGCAATAAAATGCAAGTA 63037549 AAAAACTTTGTTGAGTTGGGAATCGATTTCTAGATGTTGAAACTCTGCTTGATCTATCGAGGATC 1 AAAAACTTTGTTGAGTTGGGAATCGATTTCTAGATGTTGAAACTCTGCTTGATCTATCGAGGATC * * * 63037614 TATTGTACCTATGCATGAAGAAAACAAATTGTACGCTGAGCAATGAAGCTCAGAGGTATTTCTAT 66 TACTGTACCTATGCACGAAGAAAACAAATTCTACGCTGAGCAATGAAGCTCAGAGGTATTTCTAT 63037679 AATTTAAGCAATAAAATGCAAGTA 131 AATTTAAGCAATAAAATGCAAGTA 63037703 AAA 1 AAA 63037706 TCAATTTAAA Statistics Matches: 150, Mismatches: 7, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 154 150 1.00 ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31 Consensus pattern (154 bp): AAAAACTTTGTTGAGTTGGGAATCGATTTCTAGATGTTGAAACTCTGCTTGATCTATCGAGGATC TACTGTACCTATGCACGAAGAAAACAAATTCTACGCTGAGCAATGAAGCTCAGAGGTATTTCTAT AATTTAAGCAATAAAATGCAAGTA Found at i:63039779 original size:67 final size:66 Alignment explanation
Indices: 63039650--63039925 Score: 268 Period size: 67 Copynumber: 4.1 Consensus size: 66 63039640 GCTGTCACAT * * * * * * * * 63039650 CTGTAACCCCATGTTTAGTGTCCTAGGGGACTCTATTTGATGCCATAG-CTGAGATATAGTCTTA 1 CTGTAA-CCCATGTTTAATGTCCTAGCGGACCCTATTGGATGTCATAGTC-AAGCTATGGTCTTA 63039714 CAC 64 CAC * * * * 63039717 ATGTGACCCTATGTTTAATGTCCCAGCGGGCCCTATTGGATGTCATAGTCAAGCTATGGTCTTAC 1 CTGTAACCC-ATGTTTAATGTCCTAGCGGACCCTATTGGATGTCATAGTCAAGCTATGGTCTTAC 63039782 AC 65 AC * * * * * * * 63039784 TTGTAACTACATGTTTAACGTCATAGCGAACCTTATTGGATGTCATAGCCAAGCTATGGTCTTAC 1 CTGTAAC-CCATGTTTAATGTCCTAGCGGACCCTATTGGATGTCATAGTCAAGCTATGGTCTTAC 63039849 AC 65 AC * * * * * * 63039851 CTATAACCCATGTTTAATGTTCTAGAGGACCGTATTGGATG-CAATAGTCGAGCTATAGTCTTAC 1 CTGTAACCCATGTTTAATGTCCTAGCGGACCCTATTGGATGTC-ATAGTCAAGCTATGGTCTTAC 63039915 AC 65 AC 63039917 CTGTAACCC 1 CTGTAACCC 63039926 CATTATAGCC Statistics Matches: 170, Mismatches: 35, Indels: 9 0.79 0.16 0.04 Matches are distributed among these distances: 65 1 0.01 66 58 0.34 67 109 0.64 68 2 0.01 ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32 Consensus pattern (66 bp): CTGTAACCCATGTTTAATGTCCTAGCGGACCCTATTGGATGTCATAGTCAAGCTATGGTCTTACA C Found at i:63040200 original size:16 final size:16 Alignment explanation
Indices: 63040179--63040219 Score: 73 Period size: 16 Copynumber: 2.6 Consensus size: 16 63040169 TGTAGGCTTC 63040179 TGGCGAATTAATGTTT 1 TGGCGAATTAATGTTT 63040195 TGGCGAATTAATGTTT 1 TGGCGAATTAATGTTT * 63040211 TGGCAAATT 1 TGGCGAATT 63040220 CAGTATTCAC Statistics Matches: 24, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 16 24 1.00 ACGTcount: A:0.27, C:0.07, G:0.24, T:0.41 Consensus pattern (16 bp): TGGCGAATTAATGTTT Found at i:63040559 original size:25 final size:25 Alignment explanation
Indices: 63040523--63040571 Score: 89 Period size: 25 Copynumber: 2.0 Consensus size: 25 63040513 AGAGCAAGTA * 63040523 TTTGTGGTGTATTTTGTATGTTGCC 1 TTTGTGGCGTATTTTGTATGTTGCC 63040548 TTTGTGGCGTATTTTGTATGTTGC 1 TTTGTGGCGTATTTTGTATGTTGC 63040572 TTTTATGGTG Statistics Matches: 23, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 25 23 1.00 ACGTcount: A:0.08, C:0.08, G:0.29, T:0.55 Consensus pattern (25 bp): TTTGTGGCGTATTTTGTATGTTGCC Found at i:63043537 original size:44 final size:44 Alignment explanation
Indices: 63043487--63043578 Score: 134 Period size: 44 Copynumber: 2.1 Consensus size: 44 63043477 CCAAAGTAAC * 63043487 AGTAACAGTACGACACACAAT-GTGCCTTATCGACTCGAA-GTCGA 1 AGTAACAGTACGACAC-CAATAGTGCCTCATCGACTC-AAGGTCGA * 63043531 AGTAACAGTACGACACCTATAGTGCCTCATCGACTCAAGGTCGA 1 AGTAACAGTACGACACCAATAGTGCCTCATCGACTCAAGGTCGA 63043575 AGTA 1 AGTA 63043579 TCCCTGAACA Statistics Matches: 44, Mismatches: 2, Indels: 4 0.88 0.04 0.08 Matches are distributed among these distances: 43 5 0.11 44 39 0.89 ACGTcount: A:0.34, C:0.25, G:0.21, T:0.21 Consensus pattern (44 bp): AGTAACAGTACGACACCAATAGTGCCTCATCGACTCAAGGTCGA Found at i:63044488 original size:18 final size:19 Alignment explanation
Indices: 63044460--63044495 Score: 56 Period size: 18 Copynumber: 1.9 Consensus size: 19 63044450 TACTTTTTTT * 63044460 TTTCTTTTATTT-CTTTAG 1 TTTCTTATATTTACTTTAG 63044478 TTTCTTATATTTACTTTA 1 TTTCTTATATTTACTTTA 63044496 TTTTATTTAC Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 18 11 0.69 19 5 0.31 ACGTcount: A:0.17, C:0.11, G:0.03, T:0.69 Consensus pattern (19 bp): TTTCTTATATTTACTTTAG Found at i:63044502 original size:14 final size:13 Alignment explanation
Indices: 63044448--63044507 Score: 52 Period size: 14 Copynumber: 4.5 Consensus size: 13 63044438 TTTTGTTTCT 63044448 TTTACTTTTTTT- 1 TTTACTTTTTTTA * 63044460 TTT-CTTTTATTTC 1 TTTACTTTT-TTTA * * 63044473 TTTAGTTTCTTATA 1 TTTACTTT-TTTTA 63044487 TTTACTTTATTTTA 1 TTTACTTT-TTTTA 63044501 TTTACTT 1 TTTACTT 63044508 CATTGTTTTA Statistics Matches: 38, Mismatches: 6, Indels: 6 0.76 0.12 0.12 Matches are distributed among these distances: 11 5 0.13 12 6 0.16 13 3 0.08 14 23 0.61 15 1 0.03 ACGTcount: A:0.15, C:0.10, G:0.02, T:0.73 Consensus pattern (13 bp): TTTACTTTTTTTA Found at i:63046714 original size:4 final size:4 Alignment explanation
Indices: 63046705--63047057 Score: 323 Period size: 4 Copynumber: 88.2 Consensus size: 4 63046695 CATCTGACTG * * 63046705 CATA CATA CATA CGTA CATA CATA CATA CGTA CATA CATA CAT- -ATA 1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA * * * * ** 63046751 CATA CATA CGTA CATA CCTA CATA TATA CGTA CATA TGTA CATA CATA 1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA * * * * * 63046799 CGTA CATA CATA CGTA CATA TATA TATA CATA CGTA CATA CATA CATA 1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA * * * ** * 63046847 CGTA CATA CGTA CATA CATA TATA TGTA CATA CATA CATA CGTA CATA 1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA * ** * * * 63046895 CGTA CATA TGTA CGTA GATA CATA CATA CATA CATA TATA CATA CATA 1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA * * * ** 63046943 CGTA CGTA CATA CATA CATA CATA CATA CGTA CATA CATA TGTA CATA 1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA * * * * * * ** 63046991 CATA CATA GATA CATA CGTA TATA CGTA CATA CGTA TATA TGTTA CATA 1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA -CATA CATA * 63047040 CATA CGTTA CATA CATA C 1 CATA C-ATA CATA CATA C 63047058 GTTACGTATA Statistics Matches: 276, Mismatches: 69, Indels: 8 0.78 0.20 0.02 Matches are distributed among these distances: 2 2 0.01 4 269 0.97 5 5 0.02 ACGTcount: A:0.42, C:0.21, G:0.07, T:0.29 Consensus pattern (4 bp): CATA Found at i:63055681 original size:33 final size:34 Alignment explanation
Indices: 63055622--63055686 Score: 80 Period size: 33 Copynumber: 1.9 Consensus size: 34 63055612 TAAGAGTTAG * ** 63055622 AAATAGATATTATGTAAAAATTTG-AAATAAATA 1 AAATAGAAATTATGTAAAAAAATGAAAATAAATA 63055655 AAATAGAAATT-TGTAAAAAAAATGAAAATAAA 1 AAATAGAAATTATGT-AAAAAAATGAAAATAAA 63055687 ATGAATAAAT Statistics Matches: 27, Mismatches: 3, Indels: 3 0.82 0.09 0.09 Matches are distributed among these distances: 32 3 0.11 33 17 0.63 34 7 0.26 ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28 Consensus pattern (34 bp): AAATAGAAATTATGTAAAAAAATGAAAATAAATA Found at i:63055726 original size:3 final size:3 Alignment explanation
Indices: 63055718--63055765 Score: 96 Period size: 3 Copynumber: 16.0 Consensus size: 3 63055708 GGGAAAAGAT 63055718 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA 1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA 63055766 TAAATTGATT Statistics Matches: 45, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 45 1.00 ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33 Consensus pattern (3 bp): ATA Found at i:63055830 original size:20 final size:20 Alignment explanation
Indices: 63055793--63055830 Score: 51 Period size: 20 Copynumber: 1.9 Consensus size: 20 63055783 TAATAGGATA * 63055793 GTAATAATAGTAATAATACG 1 GTAATAATAGTAAAAATACG 63055813 GTAATAA-AGTAGAAAATA 1 GTAATAATAGTA-AAAATA 63055831 ATAATGGAAT Statistics Matches: 16, Mismatches: 1, Indels: 2 0.84 0.05 0.11 Matches are distributed among these distances: 19 4 0.25 20 12 0.75 ACGTcount: A:0.55, C:0.03, G:0.16, T:0.26 Consensus pattern (20 bp): GTAATAATAGTAAAAATACG Found at i:63055998 original size:20 final size:20 Alignment explanation
Indices: 63055897--63056000 Score: 66 Period size: 20 Copynumber: 5.0 Consensus size: 20 63055887 GTTAATAATG * 63055897 ATAATAAAATAAAAGAAAATA 1 ATAATAAAATAATA-AAAATA * * * * 63055918 ACACTATATTAATAAAAATA 1 ATAATAAAATAATAAAAATA * * 63055938 ATAATAATAGGTTAATAATAATA 1 ATAATAA-A--ATAATAAAAATA * * * 63055961 GTAATAAAA-AGGTGAAAATA 1 ATAATAAAATA-ATAAAAATA 63055981 ATAATAAAATAATAAAAATA 1 ATAATAAAATAATAAAAATA 63056001 CTATTACGTT Statistics Matches: 61, Mismatches: 17, Indels: 11 0.69 0.19 0.12 Matches are distributed among these distances: 19 1 0.02 20 31 0.51 21 11 0.18 22 1 0.02 23 17 0.28 ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26 Consensus pattern (20 bp): ATAATAAAATAATAAAAATA Found at i:63056034 original size:3 final size:3 Alignment explanation
Indices: 63056028--63056060 Score: 66 Period size: 3 Copynumber: 11.0 Consensus size: 3 63056018 CTACTACTAC 63056028 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA 1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA 63056061 CCCTCTCCCC Statistics Matches: 30, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 30 1.00 ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33 Consensus pattern (3 bp): TAA Found at i:63057287 original size:15 final size:15 Alignment explanation
Indices: 63057267--63057308 Score: 57 Period size: 15 Copynumber: 2.8 Consensus size: 15 63057257 TGGCACCCAA * 63057267 AGCCGAGAAGAAGCT 1 AGCCGAGAAGAAGCC * 63057282 AGCCGAGAAAAAGCC 1 AGCCGAGAAGAAGCC * 63057297 AGCCGAGGAGAA 1 AGCCGAGAAGAA 63057309 AAAAGCCGAG Statistics Matches: 23, Mismatches: 4, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 15 23 1.00 ACGTcount: A:0.43, C:0.21, G:0.33, T:0.02 Consensus pattern (15 bp): AGCCGAGAAGAAGCC Found at i:63058359 original size:15 final size:15 Alignment explanation
Indices: 63058341--63058388 Score: 51 Period size: 15 Copynumber: 3.1 Consensus size: 15 63058331 AGTAATTTAA 63058341 TTTTTTTCTTTTATT 1 TTTTTTTCTTTTATT ** * 63058356 TTTTTAACTTTTCTT 1 TTTTTTTCTTTTATT * 63058371 TTTTTTTCCCTTTATT 1 TTTTTTT-CTTTTATT 63058387 TT 1 TT 63058389 CCATTATCTT Statistics Matches: 25, Mismatches: 7, Indels: 1 0.76 0.21 0.03 Matches are distributed among these distances: 15 17 0.68 16 8 0.32 ACGTcount: A:0.08, C:0.12, G:0.00, T:0.79 Consensus pattern (15 bp): TTTTTTTCTTTTATT Found at i:63058597 original size:21 final size:22 Alignment explanation
Indices: 63058573--63058616 Score: 63 Period size: 21 Copynumber: 2.0 Consensus size: 22 63058563 AAACTACGTT * 63058573 AAAAGAAATGAAGAAG-AGAAG 1 AAAACAAATGAAGAAGCAGAAG * 63058594 AAAACAAATGGAGAAGCAGAAG 1 AAAACAAATGAAGAAGCAGAAG 63058616 A 1 A 63058617 CAATGAAAAA Statistics Matches: 20, Mismatches: 2, Indels: 1 0.87 0.09 0.04 Matches are distributed among these distances: 21 14 0.70 22 6 0.30 ACGTcount: A:0.64, C:0.05, G:0.27, T:0.05 Consensus pattern (22 bp): AAAACAAATGAAGAAGCAGAAG Found at i:63058857 original size:29 final size:29 Alignment explanation
Indices: 63058806--63058879 Score: 69 Period size: 29 Copynumber: 2.5 Consensus size: 29 63058796 ACAGCACGAT * * * * 63058806 AACATAAGTGACTAAAACGTAACATT-TCA 1 AACATAAATAACTAAAACATAAC-TTGACA * 63058835 AACATAAATAACTAAAATATAACTTGAGACA 1 AACATAAATAACTAAAACATAACTT--GACA 63058866 AACATAAATAACTA 1 AACATAAATAACTA 63058880 TTTTAATAAT Statistics Matches: 37, Mismatches: 5, Indels: 4 0.80 0.11 0.09 Matches are distributed among these distances: 28 2 0.05 29 19 0.51 31 16 0.43 ACGTcount: A:0.55, C:0.15, G:0.07, T:0.23 Consensus pattern (29 bp): AACATAAATAACTAAAACATAACTTGACA Found at i:63061414 original size:18 final size:18 Alignment explanation
Indices: 63061387--63061421 Score: 52 Period size: 18 Copynumber: 1.9 Consensus size: 18 63061377 ATACCGGTTT * 63061387 TCGGCATTTCGGCTTTTC 1 TCGGCATTTCGACTTTTC * 63061405 TCGGCTTTTCGACTTTT 1 TCGGCATTTCGACTTTT 63061422 GCCGATCCAG Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 18 15 1.00 ACGTcount: A:0.06, C:0.26, G:0.20, T:0.49 Consensus pattern (18 bp): TCGGCATTTCGACTTTTC Found at i:63062626 original size:21 final size:21 Alignment explanation
Indices: 63062602--63062641 Score: 71 Period size: 21 Copynumber: 1.9 Consensus size: 21 63062592 TGAAATGCCC 63062602 ATCATGAAACATTTACCTATT 1 ATCATGAAACATTTACCTATT * 63062623 ATCATGGAACATTTACCTA 1 ATCATGAAACATTTACCTA 63062642 ACCCATTATC Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 21 18 1.00 ACGTcount: A:0.38, C:0.20, G:0.07, T:0.35 Consensus pattern (21 bp): ATCATGAAACATTTACCTATT Found at i:63065607 original size:23 final size:22 Alignment explanation
Indices: 63065581--63065649 Score: 61 Period size: 23 Copynumber: 3.1 Consensus size: 22 63065571 TGTTCATATT * 63065581 TTATTTTTAATCTTGTTTCTAAA 1 TTATTTTTAATCATG-TTCTAAA * * 63065604 TTATTTGT-AT-ATGTTCATAAT 1 TTATTTTTAATCATGTTC-TAAA * 63065625 TTATTTTTAATCCTGCTTCTAAA 1 TTATTTTTAATCATG-TTCTAAA 63065648 TT 1 TT 63065650 TATCTATTCA Statistics Matches: 36, Mismatches: 6, Indels: 8 0.72 0.12 0.16 Matches are distributed among these distances: 20 3 0.08 21 12 0.33 22 4 0.11 23 14 0.39 24 3 0.08 ACGTcount: A:0.26, C:0.10, G:0.06, T:0.58 Consensus pattern (22 bp): TTATTTTTAATCATGTTCTAAA Found at i:63065671 original size:39 final size:39 Alignment explanation
Indices: 63065560--63065728 Score: 180 Period size: 39 Copynumber: 4.2 Consensus size: 39 63065550 AATTTTGAGC * * 63065560 CTAAATTT-TACTGTTCATATTTTATTTTTAATCTTGTTT 1 CTAAATTTAT-CTATTCATATTTTATTTTTAATCCTGTTT * * * * 63065599 CTAAATTATTTGTATATGTTCATAATTTATTTTTAATCCTGCTT 1 CT-AA--A-TT-TATCTATTCATATTTTATTTTTAATCCTGTTT * 63065643 CTAAATTTATCTATTCATATTTTATTTTTAATCCTATTT 1 CTAAATTTATCTATTCATATTTTATTTTTAATCCTGTTT * 63065682 CTAAATTTATCTAGTT-ATATTTTATTTTTAATCCTGGTT 1 CTAAATTTATCTA-TTCATATTTTATTTTTAATCCTGTTT * 63065721 CAAAATTT 1 CTAAATTT 63065729 GTAATTTAAA Statistics Matches: 111, Mismatches: 12, Indels: 14 0.81 0.09 0.10 Matches are distributed among these distances: 39 70 0.63 40 6 0.05 41 1 0.01 42 1 0.01 43 4 0.04 44 28 0.25 45 1 0.01 ACGTcount: A:0.27, C:0.11, G:0.05, T:0.57 Consensus pattern (39 bp): CTAAATTTATCTATTCATATTTTATTTTTAATCCTGTTT Found at i:63065728 original size:78 final size:82 Alignment explanation
Indices: 63065573--63065728 Score: 212 Period size: 78 Copynumber: 1.9 Consensus size: 82 63065563 AATTTTACTG * * * 63065573 TTCATATTTTATTTTTAATCTTGTTTCTAAATTATTTGTATATGTTCATAATTTATTTTTAATCC 1 TTCATATTTTATTTTTAATCCTATTTCTAAA-TATTTATATATGTTCATAATTTATTTTTAATCC * 63065638 TGCTTCTAAATTTATCTA 65 TGCTTCAAAATTTATCTA * * 63065656 TTCATATTTTATTTTTAATCCTATTTCT-AA-ATTTATCTA-GTT-ATATTTTATTTTTAATCCT 1 TTCATATTTTATTTTTAATCCTATTTCTAAATATTTATATATGTTCATAATTTATTTTTAATCCT * 63065717 GGTTCAAAATTT 66 GCTTCAAAATTT 63065729 GTAATTTAAA Statistics Matches: 66, Mismatches: 7, Indels: 5 0.85 0.09 0.06 Matches are distributed among these distances: 78 28 0.42 79 3 0.05 80 7 0.11 82 2 0.03 83 26 0.39 ACGTcount: A:0.27, C:0.11, G:0.04, T:0.58 Consensus pattern (82 bp): TTCATATTTTATTTTTAATCCTATTTCTAAATATTTATATATGTTCATAATTTATTTTTAATCCT GCTTCAAAATTTATCTA Found at i:63066480 original size:26 final size:25 Alignment explanation
Indices: 63066435--63066543 Score: 137 Period size: 26 Copynumber: 4.2 Consensus size: 25 63066425 GATACAAATA 63066435 GATAATGGGTTAGGTAAATATTCAAT 1 GATAATGGGTTAGGTAAATATTC-AT * * * 63066461 GACAATAGATTAGGTAAATATTCCAT 1 GATAATGGGTTAGGTAAATATT-CAT * 63066487 GATAATGGGTTAGGTAAATGTTTCAT 1 GATAATGGGTTAGGTAAAT-ATTCAT * 63066513 GATAATGGGTTAGGTAAATGTTTCAT 1 GATAATGGGTTAGGTAAAT-ATTCAT 63066539 GATAA 1 GATAA 63066544 GAATTTCATG Statistics Matches: 74, Mismatches: 7, Indels: 4 0.87 0.08 0.05 Matches are distributed among these distances: 26 71 0.96 27 3 0.04 ACGTcount: A:0.37, C:0.06, G:0.23, T:0.35 Consensus pattern (25 bp): GATAATGGGTTAGGTAAATATTCAT Found at i:63068057 original size:26 final size:26 Alignment explanation
Indices: 63068028--63068080 Score: 72 Period size: 26 Copynumber: 2.0 Consensus size: 26 63068018 TTTACAATTT 63068028 TACCCCTAGGAGATAAATT-ACCGAAA 1 TACCCCTAGG-GATAAATTGACCGAAA * * 63068054 TACCCCTAGGGTTAAATTGACCTAAA 1 TACCCCTAGGGATAAATTGACCGAAA 63068080 T 1 T 63068081 GCATGTTTGA Statistics Matches: 24, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 25 7 0.29 26 17 0.71 ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25 Consensus pattern (26 bp): TACCCCTAGGGATAAATTGACCGAAA Found at i:63082181 original size:26 final size:25 Alignment explanation
Indices: 63082163--63082216 Score: 90 Period size: 26 Copynumber: 2.1 Consensus size: 25 63082153 ATATAATTGT 63082163 TATTTTTATATGTAAAATATTTCAAA 1 TATTTTTATATGTAAAATATTT-AAA 63082189 TATTTTTATATGTAAAATATTTTAAA 1 TATTTTTATATGTAAAATA-TTTAAA 63082215 TA 1 TA 63082217 CACATACAAA Statistics Matches: 27, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 26 24 0.89 27 3 0.11 ACGTcount: A:0.43, C:0.02, G:0.04, T:0.52 Consensus pattern (25 bp): TATTTTTATATGTAAAATATTTAAA Found at i:63083441 original size:30 final size:30 Alignment explanation
Indices: 63083405--63083467 Score: 81 Period size: 30 Copynumber: 2.1 Consensus size: 30 63083395 CACTCTATTA * * * 63083405 TTTTTTTAGTGCATTATTATCTAATATATG 1 TTTTTTTAGTACATTATCATCTAATACATG ** 63083435 TTTTTTTTTTACATTATCATCTAATACATG 1 TTTTTTTAGTACATTATCATCTAATACATG 63083465 TTT 1 TTT 63083468 AACCACCATT Statistics Matches: 28, Mismatches: 5, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 30 28 1.00 ACGTcount: A:0.25, C:0.10, G:0.06, T:0.59 Consensus pattern (30 bp): TTTTTTTAGTACATTATCATCTAATACATG Found at i:63106865 original size:18 final size:18 Alignment explanation
Indices: 63106844--63106885 Score: 50 Period size: 18 Copynumber: 2.3 Consensus size: 18 63106834 TTAAATGAAA * 63106844 AAAATGTGATTTT-TTAAT 1 AAAAT-TGATTTTATAAAT * 63106862 AAAATTTATTTTATAAAT 1 AAAATTGATTTTATAAAT 63106880 AAAATT 1 AAAATT 63106886 TGAAATTGAT Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 17 6 0.29 18 15 0.71 ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48 Consensus pattern (18 bp): AAAATTGATTTTATAAAT Found at i:63107215 original size:23 final size:23 Alignment explanation
Indices: 63107179--63107222 Score: 63 Period size: 23 Copynumber: 1.9 Consensus size: 23 63107169 AGTTCATTCG 63107179 ATTTATTTGAAATTGAAAATTTA 1 ATTTATTTGAAATTGAAAATTTA * 63107202 ATTTGATTTG-AATTTAAAATT 1 ATTT-ATTTGAAATTGAAAATT 63107223 CAAAAAAAAA Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 23 14 0.74 24 5 0.26 ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50 Consensus pattern (23 bp): ATTTATTTGAAATTGAAAATTTA Found at i:63116437 original size:19 final size:19 Alignment explanation
Indices: 63116399--63116437 Score: 53 Period size: 19 Copynumber: 2.1 Consensus size: 19 63116389 CTACTAATTT * 63116399 TATGGTGCGAAAGAATATA 1 TATGGTGCGAAAGAAAATA 63116418 TATGGTGC-AAAGATAAATA 1 TATGGTGCGAAAGA-AAATA 63116437 T 1 T 63116438 TAGAGTGAAA Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 18 5 0.28 19 13 0.72 ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28 Consensus pattern (19 bp): TATGGTGCGAAAGAAAATA Found at i:63119452 original size:19 final size:19 Alignment explanation
Indices: 63119428--63119468 Score: 73 Period size: 19 Copynumber: 2.2 Consensus size: 19 63119418 AAAGCTAAGA 63119428 AAACCTAATTAAATGCCTC 1 AAACCTAATTAAATGCCTC * 63119447 AAACCTAATTAAATGTCTC 1 AAACCTAATTAAATGCCTC 63119466 AAA 1 AAA 63119469 AGTTTTCAAA Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 19 21 1.00 ACGTcount: A:0.46, C:0.22, G:0.05, T:0.27 Consensus pattern (19 bp): AAACCTAATTAAATGCCTC Found at i:63121076 original size:20 final size:21 Alignment explanation
Indices: 63121050--63121095 Score: 85 Period size: 20 Copynumber: 2.2 Consensus size: 21 63121040 AGCCGGGATC 63121050 ACTAACTAATACTAATCTAAT 1 ACTAACTAATACTAATCTAAT 63121071 -CTAACTAATACTAATCTAAT 1 ACTAACTAATACTAATCTAAT 63121091 ACTAA 1 ACTAA 63121096 TATAATAGAA Statistics Matches: 24, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 20 20 0.83 21 4 0.17 ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33 Consensus pattern (21 bp): ACTAACTAATACTAATCTAAT Found at i:63121089 original size:11 final size:11 Alignment explanation
Indices: 63121050--63121102 Score: 76 Period size: 11 Copynumber: 5.1 Consensus size: 11 63121040 AGCCGGGATC 63121050 ACTAA-CTAAT 1 ACTAATCTAAT 63121060 ACTAATCTAAT 1 ACTAATCTAAT 63121071 -CTAA-CTAAT 1 ACTAATCTAAT 63121080 ACTAATCTAAT 1 ACTAATCTAAT * 63121091 ACTAATATAAT 1 ACTAATCTAAT 63121102 A 1 A 63121103 GAAAAATTAT Statistics Matches: 39, Mismatches: 1, Indels: 5 0.87 0.02 0.11 Matches are distributed among these distances: 9 5 0.13 10 13 0.33 11 21 0.54 ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34 Consensus pattern (11 bp): ACTAATCTAAT Found at i:63121102 original size:5 final size:6 Alignment explanation
Indices: 63121054--63121102 Score: 56 Period size: 5 Copynumber: 9.2 Consensus size: 6 63121044 GGGATCACTA 63121054 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -CTAAT ACTAAT 1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT 63121097 A-TAAT A 1 ACTAAT A 63121103 GAAAAATTAT Statistics Matches: 39, Mismatches: 0, Indels: 9 0.81 0.00 0.19 Matches are distributed among these distances: 4 3 0.08 5 18 0.46 6 18 0.46 ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35 Consensus pattern (6 bp): ACTAAT Found at i:63121115 original size:14 final size:15 Alignment explanation
Indices: 63121096--63121126 Score: 55 Period size: 14 Copynumber: 2.1 Consensus size: 15 63121086 CTAATACTAA 63121096 TATAATAGAAAA-AT 1 TATAATAGAAAATAT 63121110 TATAATAGAAAATAT 1 TATAATAGAAAATAT 63121125 TA 1 TA 63121127 ATATAATAGA Statistics Matches: 16, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 14 12 0.75 15 4 0.25 ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32 Consensus pattern (15 bp): TATAATAGAAAATAT Found at i:63121133 original size:18 final size:17 Alignment explanation
Indices: 63121088--63121138 Score: 63 Period size: 18 Copynumber: 3.1 Consensus size: 17 63121078 ATACTAATCT 63121088 AATACTAATATAATAGAA 1 AATA-TAATATAATAGAA 63121106 AA-AT--TATAATAGAA 1 AATATAATATAATAGAA 63121120 AATATTAATATAATAGAA 1 AATA-TAATATAATAGAA 63121138 A 1 A 63121139 GAAAATAACT Statistics Matches: 29, Mismatches: 0, Indels: 8 0.78 0.00 0.22 Matches are distributed among these distances: 14 12 0.41 15 1 0.03 16 2 0.07 17 1 0.03 18 13 0.45 ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29 Consensus pattern (17 bp): AATATAATATAATAGAA Found at i:63138575 original size:23 final size:25 Alignment explanation
Indices: 63138532--63138586 Score: 71 Period size: 24 Copynumber: 2.3 Consensus size: 25 63138522 AACTTATAAA 63138532 TTAAAACAAAAAAAAATTAAAAT-C 1 TTAAAACAAAAAAAAATTAAAATAC * 63138556 TTAAAA-ATAAAATAAA-TAAAATAC 1 TTAAAACA-AAAAAAAATTAAAATAC 63138580 TTAAAAC 1 TTAAAAC 63138587 TTATTTAACT Statistics Matches: 27, Mismatches: 1, Indels: 5 0.82 0.03 0.15 Matches are distributed among these distances: 23 7 0.26 24 20 0.74 ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24 Consensus pattern (25 bp): TTAAAACAAAAAAAAATTAAAATAC Found at i:63144070 original size:5 final size:5 Alignment explanation
Indices: 63144060--63144085 Score: 52 Period size: 5 Copynumber: 5.2 Consensus size: 5 63144050 TAATTTTATA 63144060 AAAAG AAAAG AAAAG AAAAG AAAAG A 1 AAAAG AAAAG AAAAG AAAAG AAAAG A 63144086 TATTAAGTTA Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 21 1.00 ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00 Consensus pattern (5 bp): AAAAG Found at i:63144207 original size:30 final size:30 Alignment explanation
Indices: 63144171--63144232 Score: 124 Period size: 30 Copynumber: 2.1 Consensus size: 30 63144161 CATCGATTTC 63144171 ACCATTTTTGGAAGCTCACTTAGGACTCAA 1 ACCATTTTTGGAAGCTCACTTAGGACTCAA 63144201 ACCATTTTTGGAAGCTCACTTAGGACTCAA 1 ACCATTTTTGGAAGCTCACTTAGGACTCAA 63144231 AC 1 AC 63144233 ATTCACTCAT Statistics Matches: 32, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 30 32 1.00 ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29 Consensus pattern (30 bp): ACCATTTTTGGAAGCTCACTTAGGACTCAA Found at i:63148648 original size:24 final size:22 Alignment explanation
Indices: 63148604--63148648 Score: 54 Period size: 22 Copynumber: 2.0 Consensus size: 22 63148594 AATTTAGCCC * * 63148604 TATATATTTATTTTTATTATTA 1 TATATATATATTTTCATTATTA 63148626 TATATATATATATTTCATATATT 1 TATATATATAT-TTTCAT-TATT 63148649 GTAATTTGTT Statistics Matches: 19, Mismatches: 2, Indels: 2 0.83 0.09 0.09 Matches are distributed among these distances: 22 10 0.53 23 5 0.26 24 4 0.21 ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62 Consensus pattern (22 bp): TATATATATATTTTCATTATTA Found at i:63148709 original size:25 final size:23 Alignment explanation
Indices: 63148678--63148728 Score: 70 Period size: 23 Copynumber: 2.3 Consensus size: 23 63148668 CTTACTTTTA 63148678 TATTATATAT-TGTAAAATTATTT 1 TATTATATATAT-TAAAATTATTT * 63148701 TATTATATATATTAATATTA-TT 1 TATTATATATATTAAAATTATTT 63148723 TATTAT 1 TATTAT 63148729 CTATTATTTT Statistics Matches: 26, Mismatches: 1, Indels: 3 0.87 0.03 0.10 Matches are distributed among these distances: 22 8 0.31 23 17 0.65 24 1 0.04 ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59 Consensus pattern (23 bp): TATTATATATATTAAAATTATTT Found at i:63148879 original size:29 final size:29 Alignment explanation
Indices: 63148842--63148913 Score: 76 Period size: 29 Copynumber: 2.4 Consensus size: 29 63148832 TTTTTACATA * 63148842 TATACTTTCATTATTT-TATATTATCTATAT 1 TATA-TTTCATTATTTCTATA-TATCTAAAT * 63148872 TATATTTC-TTATTTCCTATATATTTAAAT 1 TATATTTCATTATTT-CTATATATCTAAAT * 63148901 TATATTTTATTAT 1 TATATTTCATTAT 63148914 ATAACATTTA Statistics Matches: 36, Mismatches: 3, Indels: 6 0.80 0.07 0.13 Matches are distributed among these distances: 28 6 0.17 29 18 0.50 30 12 0.33 ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61 Consensus pattern (29 bp): TATATTTCATTATTTCTATATATCTAAAT Found at i:63148969 original size:30 final size:31 Alignment explanation
Indices: 63148900--63148978 Score: 81 Period size: 31 Copynumber: 2.5 Consensus size: 31 63148890 TATATTTAAA ** * 63148900 TTATATTTTATTATATAACATTTATTATATTT 1 TTAT-TTTTATTATATATTACTTATTATATTT * 63148932 TTATTTTTATTCTATATTACTTATTA-ATTT 1 TTATTTTTATTATATATTACTTATTATATTT * 63148962 TCT-TTTTTTTTATATAT 1 T-TATTTTTATTATATAT 63148979 GTTATGTATA Statistics Matches: 40, Mismatches: 6, Indels: 4 0.80 0.12 0.08 Matches are distributed among these distances: 30 17 0.43 31 19 0.47 32 4 0.10 ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67 Consensus pattern (31 bp): TTATTTTTATTATATATTACTTATTATATTT Found at i:63149023 original size:12 final size:12 Alignment explanation
Indices: 63149008--63149032 Score: 50 Period size: 12 Copynumber: 2.1 Consensus size: 12 63148998 TTATTTATGT 63149008 TTATATTATTCA 1 TTATATTATTCA 63149020 TTATATTATTCA 1 TTATATTATTCA 63149032 T 1 T 63149033 AATTTTAAAA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60 Consensus pattern (12 bp): TTATATTATTCA Found at i:63158396 original size:16 final size:15 Alignment explanation
Indices: 63158339--63158403 Score: 69 Period size: 16 Copynumber: 4.0 Consensus size: 15 63158329 CCAATCTTTC 63158339 TTTTTATTTTTATTTA 1 TTTTTATTTTT-TTTA 63158355 TTTTT-TTCTTTTATTA 1 TTTTTATT-TTTT-TTA 63158371 TTTATTATTTTCTTTTA 1 TTT-TTATTTT-TTTTA 63158388 TTTTTATTTTATTTTA 1 TTTTTATTTT-TTTTA 63158404 GTTAAATATT Statistics Matches: 43, Mismatches: 1, Indels: 10 0.80 0.02 0.19 Matches are distributed among these distances: 15 3 0.07 16 26 0.60 17 10 0.23 18 4 0.09 ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80 Consensus pattern (15 bp): TTTTTATTTTTTTTA Found at i:63158396 original size:23 final size:23 Alignment explanation
Indices: 63158335--63158396 Score: 85 Period size: 20 Copynumber: 2.8 Consensus size: 23 63158325 CAACCCAATC * 63158335 TTTCTTTTTATTTTTATTTATTTT 1 TTTC-TTTTATTTTTATTTATTAT 63158359 TTTCTTTTA---TTATTTATTAT 1 TTTCTTTTATTTTTATTTATTAT 63158379 TTTCTTTTATTTTTATTT 1 TTTCTTTTATTTTTATTT 63158397 TATTTTAGTT Statistics Matches: 34, Mismatches: 1, Indels: 7 0.81 0.02 0.17 Matches are distributed among these distances: 20 19 0.56 23 11 0.32 24 4 0.12 ACGTcount: A:0.15, C:0.05, G:0.00, T:0.81 Consensus pattern (23 bp): TTTCTTTTATTTTTATTTATTAT Found at i:63158595 original size:43 final size:42 Alignment explanation
Indices: 63158512--63158602 Score: 112 Period size: 42 Copynumber: 2.1 Consensus size: 42 63158502 TCCATGCTGT * * * * 63158512 CAAACAGTTCTATTCCAGCCCAGAATGCCATATCTCTGCAGC 1 CAAACAGTCCTATTCCAGCCCAGAATCCCAAAACTCTGCAGC * 63158554 CAAACAGTCCTATTCCAGCCTTAGAATCCCCAAAAC-CTGCAGC 1 CAAACAGTCCTATTCCAGCC-CAGAAT-CCCAAAACTCTGCAGC 63158597 CAAACA 1 CAAACA 63158603 CCCCTTTTCA Statistics Matches: 42, Mismatches: 5, Indels: 3 0.84 0.10 0.06 Matches are distributed among these distances: 42 19 0.45 43 18 0.43 44 5 0.12 ACGTcount: A:0.33, C:0.35, G:0.12, T:0.20 Consensus pattern (42 bp): CAAACAGTCCTATTCCAGCCCAGAATCCCAAAACTCTGCAGC Found at i:63159571 original size:118 final size:118 Alignment explanation
Indices: 63159363--63159593 Score: 390 Period size: 118 Copynumber: 2.0 Consensus size: 118 63159353 TGTTTTCCAT * * 63159363 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT 1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT 63159428 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA 66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA ** 63159481 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT 1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT **** 63159546 CTACTTCGCGTCAAAAGGTTGTGTGACGTGTTGGGTAAAACTCCGCTA 66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTA 63159594 ACCGGAAATA Statistics Matches: 105, Mismatches: 8, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 118 105 1.00 ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29 Consensus pattern (118 bp): GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA Found at i:63159747 original size:12 final size:12 Alignment explanation
Indices: 63159719--63159762 Score: 54 Period size: 12 Copynumber: 3.6 Consensus size: 12 63159709 AATAAAATTT 63159719 AAAAAAAATCAAA- 1 AAAAAAAA--AAAG 63159732 AAAAAAAAAAAG 1 AAAAAAAAAAAG * 63159744 AAAAAAAAGAAG 1 AAAAAAAAAAAG 63159756 AAAAAAA 1 AAAAAAA 63159763 TAAGTACTAA Statistics Matches: 29, Mismatches: 1, Indels: 3 0.88 0.03 0.09 Matches are distributed among these distances: 11 3 0.10 12 18 0.62 13 8 0.28 ACGTcount: A:0.89, C:0.02, G:0.07, T:0.02 Consensus pattern (12 bp): AAAAAAAAAAAG Found at i:63163247 original size:18 final size:20 Alignment explanation
Indices: 63163224--63163263 Score: 57 Period size: 20 Copynumber: 2.1 Consensus size: 20 63163214 CTTTCCTCAA * 63163224 AAGAAAT-AGAA-TTTTATT 1 AAGAAATAAGAAGTTTGATT 63163242 AAGAAATAAGAAGTTTGATT 1 AAGAAATAAGAAGTTTGATT 63163262 AA 1 AA 63163264 CTAAAAATGG Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 18 7 0.37 19 4 0.21 20 8 0.42 ACGTcount: A:0.53, C:0.00, G:0.15, T:0.33 Consensus pattern (20 bp): AAGAAATAAGAAGTTTGATT Found at i:63165185 original size:15 final size:14 Alignment explanation
Indices: 63165147--63165186 Score: 55 Period size: 13 Copynumber: 2.9 Consensus size: 14 63165137 TTGTTAAATG 63165147 ATGATATTTTATTT 1 ATGATATTTTATTT * 63165161 GTGA-ATTTTATTT 1 ATGATATTTTATTT 63165174 ATGAGTATTTTAT 1 ATGA-TATTTTAT 63165187 ATAATCAATT Statistics Matches: 22, Mismatches: 2, Indels: 3 0.81 0.07 0.11 Matches are distributed among these distances: 13 12 0.55 14 3 0.14 15 7 0.32 ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60 Consensus pattern (14 bp): ATGATATTTTATTT Found at i:63166529 original size:25 final size:25 Alignment explanation
Indices: 63166488--63166537 Score: 66 Period size: 25 Copynumber: 2.0 Consensus size: 25 63166478 TAATAATAAA * * 63166488 TAAATATATTAATTTATTTTTATAT 1 TAAATAAATTAATTTATTTATATAT 63166513 TAAATAAATATAA-TTATTTATATAT 1 TAAATAAAT-TAATTTATTTATATAT 63166538 GTAATATATA Statistics Matches: 22, Mismatches: 2, Indels: 2 0.85 0.08 0.08 Matches are distributed among these distances: 25 19 0.86 26 3 0.14 ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54 Consensus pattern (25 bp): TAAATAAATTAATTTATTTATATAT Found at i:63166548 original size:29 final size:30 Alignment explanation
Indices: 63166480--63166554 Score: 91 Period size: 29 Copynumber: 2.6 Consensus size: 30 63166470 TTTTAATTTA * * 63166480 ATAATAAATAAATAT-ATTAATTTATTTTT 1 ATAATAAATAAATATAATTAATTTATATAT * 63166509 ATATTAAATAAATATAATT-ATTTATATAT 1 ATAATAAATAAATATAATTAATTTATATAT * * 63166538 GTAATATATAAATATAA 1 ATAATAAATAAATATAA 63166555 AATGATATTA Statistics Matches: 39, Mismatches: 6, Indels: 2 0.83 0.13 0.04 Matches are distributed among these distances: 29 36 0.92 30 3 0.08 ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47 Consensus pattern (30 bp): ATAATAAATAAATATAATTAATTTATATAT Found at i:63171121 original size:47 final size:47 Alignment explanation
Indices: 63171052--63171145 Score: 161 Period size: 47 Copynumber: 2.0 Consensus size: 47 63171042 AAGTCAACAG * * 63171052 AATGTATGAATTATTTAATAAAATGAGTAGGAGCTGTGGCATGTCCA 1 AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA * 63171099 AATGTATGAAGTATTTAATAAAATGCGTAGGAGATGTGGCATGTCCA 1 AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA 63171146 TCAAACTTCC Statistics Matches: 44, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 47 44 1.00 ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31 Consensus pattern (47 bp): AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA Found at i:63175209 original size:17 final size:17 Alignment explanation
Indices: 63175189--63175261 Score: 53 Period size: 17 Copynumber: 4.4 Consensus size: 17 63175179 AAATTTTTTG * 63175189 AAAATTTAAAAAATTAA 1 AAAATATAAAAAATTAA * 63175206 AAAATATATAAAATTAA 1 AAAATATAAAAAATTAA *** 63175223 ATTTTA-AAAAAATTAA 1 AAAATATAAAAAATTAA * * 63175239 GAAGTAT--AAAATTATA 1 AAAATATAAAAAATTA-A 63175255 AAAATAT 1 AAAATAT 63175262 TGAACCACCG Statistics Matches: 42, Mismatches: 12, Indels: 5 0.71 0.20 0.08 Matches are distributed among these distances: 15 7 0.17 16 17 0.40 17 18 0.43 ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32 Consensus pattern (17 bp): AAAATATAAAAAATTAA Found at i:63175711 original size:11 final size:11 Alignment explanation
Indices: 63175697--63175737 Score: 55 Period size: 11 Copynumber: 3.7 Consensus size: 11 63175687 TGTTTTCTCT 63175697 CTATTTTGCTA 1 CTATTTTGCTA * 63175708 CTATTTTACTA 1 CTATTTTGCTA * * 63175719 TTATGTTGCTA 1 CTATTTTGCTA 63175730 CTATTTTG 1 CTATTTTG 63175738 TTATTATTAT Statistics Matches: 24, Mismatches: 6, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 11 24 1.00 ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56 Consensus pattern (11 bp): CTATTTTGCTA Found at i:63175834 original size:32 final size:30 Alignment explanation
Indices: 63175774--63175838 Score: 87 Period size: 32 Copynumber: 2.1 Consensus size: 30 63175764 ACTTATTTTA 63175774 TTGTTAATTTTGTTATTATTTTAAAGGCAT 1 TTGTTAATTTTGTTATTATTTTAAAGGCAT * 63175804 TTGTTAATTTT-TTATTTTTATTTTAGAGGCAT 1 TTGTTAATTTTGTTA---TTATTTTAAAGGCAT 63175836 TTG 1 TTG 63175839 CTTATTAAGT Statistics Matches: 31, Mismatches: 1, Indels: 4 0.86 0.03 0.11 Matches are distributed among these distances: 29 3 0.10 30 11 0.35 32 17 0.55 ACGTcount: A:0.23, C:0.03, G:0.14, T:0.60 Consensus pattern (30 bp): TTGTTAATTTTGTTATTATTTTAAAGGCAT Found at i:63178422 original size:31 final size:31 Alignment explanation
Indices: 63178364--63178422 Score: 75 Period size: 31 Copynumber: 1.9 Consensus size: 31 63178354 TAAAATAATG * 63178364 ATATGTACAAAAAAAATATATATATATATAC 1 ATATGTACAAAAAAAATACATATATATATAC * * 63178395 ATATGTACATAAAATATACACTA-ATATA 1 ATATGTACAAAAAAAATACA-TATATATA 63178423 ATAATAGTTA Statistics Matches: 24, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 31 22 0.92 32 2 0.08 ACGTcount: A:0.56, C:0.08, G:0.03, T:0.32 Consensus pattern (31 bp): ATATGTACAAAAAAAATACATATATATATAC Found at i:63178547 original size:33 final size:33 Alignment explanation
Indices: 63178485--63178547 Score: 83 Period size: 33 Copynumber: 1.9 Consensus size: 33 63178475 ACACAATATG * * * 63178485 GTATTTAAAATATATATATATGTATATATAATA 1 GTATTTAAAATATATACATAAGTAAATATAATA 63178518 GTATTTAAGAATATATACATAAG-AAATATA 1 GTATTTAA-AATATATACATAAGTAAATATA 63178548 TAACTAATGG Statistics Matches: 26, Mismatches: 3, Indels: 2 0.84 0.10 0.06 Matches are distributed among these distances: 33 14 0.54 34 12 0.46 ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40 Consensus pattern (33 bp): GTATTTAAAATATATACATAAGTAAATATAATA Found at i:63179124 original size:15 final size:15 Alignment explanation
Indices: 63179106--63179140 Score: 61 Period size: 15 Copynumber: 2.3 Consensus size: 15 63179096 TTCTTCTTTT * 63179106 TTTTTTTGGGTTAGG 1 TTTTTTTGGGGTAGG 63179121 TTTTTTTGGGGTAGG 1 TTTTTTTGGGGTAGG 63179136 TTTTT 1 TTTTT 63179141 CTTTTTCTTT Statistics Matches: 19, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 15 19 1.00 ACGTcount: A:0.06, C:0.00, G:0.31, T:0.63 Consensus pattern (15 bp): TTTTTTTGGGGTAGG Found at i:63179124 original size:16 final size:16 Alignment explanation
Indices: 63179105--63179189 Score: 58 Period size: 15 Copynumber: 5.7 Consensus size: 16 63179095 TTTCTTCTTT 63179105 TTTTTTTTGGGTTAGG 1 TTTTTTTTGGGTTAGG * 63179121 -TTTTTTTGGGGTAGG 1 TTTTTTTTGGGTTAGG * 63179136 TTTTTCTTT---TT--C 1 TTTTT-TTTGGGTTAGG ** * * 63179148 TTTTTTTT-TCTTTGT 1 TTTTTTTTGGGTTAGG 63179163 TTTTTTTTGGGTTAGG 1 TTTTTTTTGGGTTAGG 63179179 TTTTTTTTGGG 1 TTTTTTTTGGG 63179190 GGCTTAATGG Statistics Matches: 54, Mismatches: 8, Indels: 14 0.71 0.11 0.18 Matches are distributed among these distances: 11 3 0.06 12 5 0.09 13 2 0.04 14 1 0.02 15 22 0.41 16 18 0.33 17 3 0.06 ACGTcount: A:0.04, C:0.04, G:0.24, T:0.69 Consensus pattern (16 bp): TTTTTTTTGGGTTAGG Found at i:63180019 original size:30 final size:30 Alignment explanation
Indices: 63179983--63180044 Score: 99 Period size: 30 Copynumber: 2.1 Consensus size: 30 63179973 TTTTGAAAAA 63179983 CAGAAATT-AAAAGACTCAACTCAACTCTCG 1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG * 63180013 CAGAAATTAAAAAGCTCAACTCACCTCTCG 1 CAGAAATTAAAAAGCTCAACTCAACTCTCG 63180043 CA 1 CA 63180045 ATATGAGTTG Statistics Matches: 30, Mismatches: 1, Indels: 2 0.91 0.03 0.06 Matches are distributed among these distances: 30 25 0.83 31 5 0.17 ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19 Consensus pattern (30 bp): CAGAAATTAAAAAGCTCAACTCAACTCTCG Found at i:63180125 original size:77 final size:78 Alignment explanation
Indices: 63180026--63180842 Score: 354 Period size: 72 Copynumber: 10.5 Consensus size: 78 63180016 AAATTAAAAA 63180026 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAAAAAAATTG-AAAATAGCTCAG 1 GCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTGAAAAAAAAAATTGAAAAATAGCTCAG * 63180090 CACGTGAGC-CAAG 65 CACATGAGCTCAAG * * * 63180103 GCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTTG-AAAACAGAATCTGAAAAACAGATTTT 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAAAAAAT-TG--AAA-A-A---T ** ** * * * 63180165 GAAAATACCTCGACATGTGACCCGAG 58 --AGCT-CAGC-ACATGAG-CTCAAG * * * * 63180191 GCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAACATAAATTGAAAAAATACCTCA 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA-AAAAATTG-AAAAATAGCTCA **** * * 63180256 GTGTGTGATCTGAA- 64 GCACATGAGCTCAAG * * 63180270 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG-AAAATAGCTCAG 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-AAAAAAATTGAAAAATAGCTCAG * 63180334 CGCATGAGC-CAAG 65 CACATGAGCTCAAG ** * * ** 63180347 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAA 1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAA-AAAAAAATTGAAAAA--TAGC * * * * * 63180412 T-TGAAAATGCCTCGGCGTGTGACCTGAG 61 TCAGCACATG----AGC---T---C-AAG * * * * * * * 63180440 GCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTG-AAATTACCTCAG- 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAAAAAATTGAAAAATAGCTCAGC * ** * 63180503 -CGTGTCCT-GAG 66 ACATGAGCTCAAG * * 63180514 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG-AAAATACCTCA- 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA-AAAAATTGAAAAATAGCTCAG * * * 63180577 -ACGTG-TCTCGAG 65 CACATGAGCTCAAG * * 63180589 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAAAATTG-AAAATATCTCAG- 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAAAAAATTGAAAAATAGCTCAGC * ** 63180651 -CATG-TCTTGAG 66 ACATGAGCTCAAG ** * * * * * 63180662 GC-CAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTG-AAATTACCTCAG- 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAAAAAATTGAAAAATAGCTCAGC * * ** 63180722 -CGTG-TCTTGAG 66 ACATGAGCTCAAG ** * * * * * 63180733 GCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAATAGAAATTG-AAATTACCTCA-- 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAAAAAATTGAAAAATAGCTCAGC * * ** 63180793 ACGTG-TCTTGAG 66 ACATGAGCTCAAG ** 63180805 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTTT 1 GCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTT 63180843 TTTGAAAGAC Statistics Matches: 609, Mismatches: 83, Indels: 98 0.77 0.11 0.12 Matches are distributed among these distances: 71 37 0.06 72 121 0.20 73 36 0.06 74 64 0.11 75 59 0.10 76 3 0.00 77 76 0.12 78 1 0.00 79 69 0.11 80 7 0.01 81 6 0.01 82 5 0.01 83 2 0.00 84 2 0.00 85 5 0.01 86 7 0.01 87 3 0.00 88 33 0.05 89 4 0.01 90 19 0.03 91 16 0.03 92 4 0.01 93 30 0.05 ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30 Consensus pattern (78 bp): GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAAAAAATTGAAAAATAGCTCAGC ACATGAGCTCAAG Found at i:63180279 original size:79 final size:76 Alignment explanation
Indices: 63180188--63180873 Score: 643 Period size: 72 Copynumber: 8.9 Consensus size: 76 63180178 CATGTGACCC * * * 63180188 GAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAACATAAATTGAAAAAATACC 1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG--AAAATACC * * 63180253 TCAGTGTGTGATCT 64 TCAGCGTGT-CTCT * * * 63180267 GAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTC 1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC * 63180332 AGCGCATGAGC-C- 66 AGCG--TG-TCTCT * ** 63180344 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAA-ACG 1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAAACAGAAATTGAAAATAC- * * * * * 63180408 GAAATTGAAAATGCCTCGGCGTGT 63 ----CT---CA-GCGT-GTC-TCT * * * * * * 63180432 GACCTGAGGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATTGAAATT 1 GA--GGC---TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAT 63180496 ACCTCAGCGTGTC-CT 61 ACCTCAGCGTGTCTCT 63180511 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC 1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC * 63180576 AACGTGTCTC- 66 AGCGTGTCTCT * 63180586 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACA-AAATTGAAAATATCTC 1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC * 63180649 AGCATGTCT-T 66 AGCGTGTCTCT ** * * 63180659 GAGGC-CAACTCATTTCTCGCAATATGAGTTGA--ATTTTG-AAAACAGAAATTGAAATTACCTC 1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC 63180720 AGCGTGTCT-T 66 AGCGTGTCTCT ** * * * 63180730 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTG-AAAATAGAAATTGAAATTACCTC 1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC * 63180792 AACGTGTCT-T 66 AGCGTGTCTCT ** * 63180802 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTTTTTTGAAAGACAGAAATTGAAAATA 1 GAGGCTCAACTCACCTCTCGCAATATGAGTTG-A---TTTTTTTGAAAAACAGAAATTGAAAATA 63180867 CCTCAGC 62 CCTCAGC 63180874 ATGTGGACCG Statistics Matches: 517, Mismatches: 54, Indels: 72 0.80 0.08 0.11 Matches are distributed among these distances: 70 6 0.01 71 33 0.06 72 121 0.23 73 28 0.05 74 48 0.09 75 61 0.12 76 1 0.00 77 44 0.09 78 7 0.01 79 102 0.20 81 2 0.00 82 3 0.01 83 2 0.00 85 3 0.01 86 3 0.01 87 2 0.00 88 1 0.00 90 14 0.03 91 10 0.02 93 26 0.05 ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30 Consensus pattern (76 bp): GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTC AGCGTGTCTCT Found at i:63180369 original size:244 final size:243 Alignment explanation
Indices: 63179816--63180642 Score: 998 Period size: 249 Copynumber: 3.4 Consensus size: 243 63179806 ACAGACATTA 63179816 AAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT 1 AAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT ** * * ** * 63179881 TGATTTTTTG-AAACTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGACTGGAGGTT 66 TGATTTTTTGAAAACAGAA-TTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCT * * 63179945 CAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATT-AAAAGACTCAACTCAA 130 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA-AAT-ACCTC-A * * * * 63180007 CTCTCGCAGAAAT-TAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG 192 GTGT-G-TG--ATCT--GAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG * * * * 63180065 AAAAAAAAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGT 1 AAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT 63180130 TGA-TTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCT 66 TGATTTTTTGAAAACAGAAT-TGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCT * * * 63180194 CAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAACATAAATTGAAAAAATACCTCAGTG 130 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAAATACCTCAGTG 63180259 TGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG 195 TGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG * 63180308 AAAGACAGAAATTGAAAATAGCTCAGCGCATGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG 1 AAA-ACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG * * ** * * * * 63180373 TTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATGCCTCGGCGTGTGACCTG 65 TTGA---TTTTTTGAAA-ACAG-AATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCG * * * * 63180438 AGGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATTG--AAATTACCT 125 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAAATACCT * * * 63180500 CAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG 190 CAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG * * * * 63180552 AAAAACAGAAATTGAAAATACCTCA--ACGTG-TCTCGAGGCTCAACTCACCTCTCGCAATATGA 1 -AAAACAGAAATTGAAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA * 63180614 GTTGATTTTTTGAAAAACAAAATTGAAAA 64 GTTGATTTTTTG-AAAACAGAATTGAAAA 63180643 TATCTCAGCA Statistics Matches: 512, Mismatches: 50, Indels: 43 0.85 0.08 0.07 Matches are distributed among these distances: 238 9 0.02 239 9 0.02 240 3 0.01 241 1 0.00 242 36 0.07 243 12 0.02 244 153 0.30 245 5 0.01 246 16 0.03 247 1 0.00 248 28 0.05 249 208 0.41 250 7 0.01 251 20 0.04 252 4 0.01 ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28 Consensus pattern (243 bp): AAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT TGATTTTTTGAAAACAGAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTC AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAAATACCTCAGTGT GTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG Found at i:63180946 original size:49 final size:50 Alignment explanation
Indices: 63180851--63180947 Score: 135 Period size: 49 Copynumber: 1.9 Consensus size: 50 63180841 TTTTTGAAAG 63180851 ACAGAAATTGAAAATACCTCAGCATGTGGACCGAGGCTCAACTCATTTTGA 1 ACAGAAATTGAAAATACCTCA-CATGTGGACCGAGGCTCAACTCATTTTGA * * * 63180902 ACAGAAATTGAAATTACCTCA-ATGT-GTCTTGAGGCTCAACTCATTT 1 ACAGAAATTGAAAATACCTCACATGTGGAC-CGAGGCTCAACTCATTT 63180948 CTCGCAATAT Statistics Matches: 42, Mismatches: 3, Indels: 4 0.86 0.06 0.08 Matches are distributed among these distances: 48 2 0.05 49 20 0.48 51 20 0.48 ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28 Consensus pattern (50 bp): ACAGAAATTGAAAATACCTCACATGTGGACCGAGGCTCAACTCATTTTGA Found at i:63180988 original size:72 final size:72 Alignment explanation
Indices: 63180901--63181125 Score: 292 Period size: 72 Copynumber: 3.0 Consensus size: 72 63180891 ACTCATTTTG 63180901 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA 1 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA 63180966 TTTTGAA 66 TTTTGAA * 63180973 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA 1 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA 63181038 TTTTTTTTTGAA 66 -----TTTTGAA * * * ** * 63181050 AGACAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGC 1 A-ACAGAAATTGAAATTACCTCA--ATGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGT 63181114 TG-ATTTTGAA 62 TGAATTTTGAA 63181124 AA 1 AA 63181126 AGTAGAAATT Statistics Matches: 136, Mismatches: 8, Indels: 17 0.84 0.05 0.11 Matches are distributed among these distances: 72 64 0.47 73 1 0.01 74 8 0.06 77 8 0.06 78 20 0.15 79 1 0.01 80 33 0.24 81 1 0.01 ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31 Consensus pattern (72 bp): AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA TTTTGAA Found at i:63181045 original size:202 final size:201 Alignment explanation
Indices: 63180699--63181096 Score: 751 Period size: 202 Copynumber: 2.0 Consensus size: 201 63180689 GAATTTTGAA * 63180699 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA 1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA * 63180764 TTTTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG 66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG * 63180829 AGTTGAATTTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGGACCGAGGCTCAACT 131 AGTTGAA-TTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACT 63180894 CATTTTG 195 CATTTTG * 63180901 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA 1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA 63180966 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG 66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG 63181031 AGTTGAATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTC 131 AGTTGAATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTC 63181096 A 196 A 63181097 CCTCTCGCAA Statistics Matches: 192, Mismatches: 4, Indels: 1 0.97 0.02 0.01 Matches are distributed among these distances: 201 58 0.30 202 134 0.70 ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31 Consensus pattern (201 bp): AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG AGTTGAATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTC ATTTTG Found at i:63181189 original size:54 final size:54 Alignment explanation
Indices: 63181089--63181194 Score: 144 Period size: 54 Copynumber: 1.9 Consensus size: 54 63181079 GAACCGAGGC * 63181089 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT 1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT * * 63181143 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAATAACGT-AAATTGAAAA 1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA 63181195 CAGAAATTGA Statistics Matches: 46, Mismatches: 3, Indels: 5 0.85 0.06 0.09 Matches are distributed among these distances: 54 33 0.72 55 9 0.20 56 4 0.09 ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28 Consensus pattern (54 bp): TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT Found at i:63181319 original size:72 final size:71 Alignment explanation
Indices: 63181185--63181350 Score: 244 Period size: 72 Copynumber: 2.3 Consensus size: 71 63181175 TGAATAACGT * * * * 63181185 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT 1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT 63181250 GAGTTG 66 GAGTTG * 63181256 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA 1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA 63181321 TGAGTTG 65 TGAGTTG ** 63181328 ATTTTGAAAAACAAAAATT-AAAA 1 AAATT-AAAAACAAAAATTGAAAA 63181351 GGCTTAACTC Statistics Matches: 86, Mismatches: 7, Indels: 4 0.89 0.07 0.04 Matches are distributed among these distances: 71 12 0.14 72 70 0.81 73 4 0.05 ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22 Consensus pattern (71 bp): AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT GAGTTG Found at i:63181507 original size:71 final size:71 Alignment explanation
Indices: 63181350--63181612 Score: 347 Period size: 70 Copynumber: 3.7 Consensus size: 71 63181340 AAAAATTAAA * * * * * 63181350 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATA-CTCAGCGT 1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT 63181412 GCCCCG 66 GCCCCG * * 63181418 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT 1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT * ** 63181483 GTCTTG 66 GCCCCG * * * 63181489 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG 1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG 63181552 TGCCCCG 65 TGCCCCG * 63181559 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA 1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA 63181613 GGCTTAACTC Statistics Matches: 166, Mismatches: 22, Indels: 10 0.84 0.11 0.05 Matches are distributed among these distances: 68 26 0.16 69 10 0.06 70 73 0.44 71 40 0.24 72 14 0.08 73 3 0.02 ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25 Consensus pattern (71 bp): AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT GCCCCG Found at i:63181581 original size:141 final size:140 Alignment explanation
Indices: 63181350--63181612 Score: 411 Period size: 141 Copynumber: 1.9 Consensus size: 140 63181340 AAAAATTAAA * * * 63181350 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACTCAGCGTGCC 1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTAAAAACAAAAACTAAAAATACTCAGCGTGCC * * 63181415 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAAATACCTCA 66 CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAATACCTCA 63181479 ACGTGTCTTG 131 ACGTGTCTTG * ** * * 63181489 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG 1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTAAAA-ACAAAAACTAAAAATA-CTCAGCGTG 63181554 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA 64 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA 63181613 GGCTTAACTC Statistics Matches: 111, Mismatches: 10, Indels: 3 0.90 0.08 0.02 Matches are distributed among these distances: 139 33 0.30 140 13 0.12 141 49 0.44 142 16 0.14 ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25 Consensus pattern (140 bp): AGGCTCAACTCACCTCTCGCAATATGAGTCAATTAAAAACAAAAACTAAAAATACTCAGCGTGCC CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAATACCTCA ACGTGTCTTG Found at i:63186828 original size:12 final size:12 Alignment explanation
Indices: 63186808--63186843 Score: 63 Period size: 12 Copynumber: 3.0 Consensus size: 12 63186798 TGGGATATGC * 63186808 AATGTATGAATG 1 AATGCATGAATG 63186820 AATGCATGAATG 1 AATGCATGAATG 63186832 AATGCATGAATG 1 AATGCATGAATG 63186844 TCAAATGAAT Statistics Matches: 23, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 12 23 1.00 ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28 Consensus pattern (12 bp): AATGCATGAATG Found at i:63188596 original size:37 final size:38 Alignment explanation
Indices: 63188496--63188597 Score: 95 Period size: 37 Copynumber: 2.6 Consensus size: 38 63188486 ATATATTTGG 63188496 TAATAATAATA--TAAAATAATAA-TATGTACATAAAAA 1 TAATAATAATATCTAAAATAA-AAGTATGTACATAAAAA * * 63188532 TACATATATATATATGCATATAATAAAAGTATGTA-ATAATAA 1 TA-ATA-ATA-ATAT-C-TAAAATAAAAGTATGTACATAAAAA * 63188574 TAATAATAATATCTACAATAAAAG 1 TAATAATAATATCTAAAATAAAAG 63188598 AAAATATTAG Statistics Matches: 55, Mismatches: 3, Indels: 15 0.75 0.04 0.21 Matches are distributed among these distances: 36 2 0.04 37 13 0.24 38 4 0.07 39 7 0.13 40 3 0.05 41 3 0.05 42 10 0.18 43 13 0.24 ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32 Consensus pattern (38 bp): TAATAATAATATCTAAAATAAAAGTATGTACATAAAAA Found at i:63188673 original size:20 final size:20 Alignment explanation
Indices: 63188641--63188678 Score: 51 Period size: 20 Copynumber: 1.9 Consensus size: 20 63188631 ACAATAATAT * 63188641 AAAATAATGATATGTACAAA 1 AAAATAATGATATATACAAA 63188661 AAAATATAT-ATATATACA 1 AAAATA-ATGATATATACA 63188679 TATGTACATA Statistics Matches: 16, Mismatches: 1, Indels: 2 0.84 0.05 0.11 Matches are distributed among these distances: 20 14 0.88 21 2 0.12 ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29 Consensus pattern (20 bp): AAAATAATGATATATACAAA Found at i:63188830 original size:33 final size:33 Alignment explanation
Indices: 63188768--63188830 Score: 83 Period size: 33 Copynumber: 1.9 Consensus size: 33 63188758 ACACAATATG * * * 63188768 GTATTTAAAATATATATATATGTATATATAATA 1 GTATTTAAAATATATACATAAGTAAATATAATA 63188801 GTATTTAAGAATATATACATAAG-AAATATA 1 GTATTTAA-AATATATACATAAGTAAATATA 63188831 TAACTAATGG Statistics Matches: 26, Mismatches: 3, Indels: 2 0.84 0.10 0.06 Matches are distributed among these distances: 33 14 0.54 34 12 0.46 ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40 Consensus pattern (33 bp): GTATTTAAAATATATACATAAGTAAATATAATA Found at i:63189074 original size:10 final size:10 Alignment explanation
Indices: 63189041--63189076 Score: 54 Period size: 10 Copynumber: 3.5 Consensus size: 10 63189031 ATATATAAAG 63189041 AAAGAAAAAA 1 AAAGAAAAAA * 63189051 AAACACAAAAA 1 AAAGA-AAAAA 63189062 AAAGAAAAAA 1 AAAGAAAAAA 63189072 AAAGA 1 AAAGA 63189077 TTCGAAAGAA Statistics Matches: 23, Mismatches: 2, Indels: 2 0.85 0.07 0.07 Matches are distributed among these distances: 10 14 0.61 11 9 0.39 ACGTcount: A:0.86, C:0.06, G:0.08, T:0.00 Consensus pattern (10 bp): AAAGAAAAAA Found at i:63189396 original size:15 final size:15 Alignment explanation
Indices: 63189378--63189412 Score: 61 Period size: 15 Copynumber: 2.3 Consensus size: 15 63189368 TTCTTCTTTT * 63189378 TTTTTTTGGGTTAGG 1 TTTTTTTGGGGTAGG 63189393 TTTTTTTGGGGTAGG 1 TTTTTTTGGGGTAGG 63189408 TTTTT 1 TTTTT 63189413 CTTTTTCTTT Statistics Matches: 19, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 15 19 1.00 ACGTcount: A:0.06, C:0.00, G:0.31, T:0.63 Consensus pattern (15 bp): TTTTTTTGGGGTAGG Found at i:63189426 original size:15 final size:14 Alignment explanation
Indices: 63189408--63189440 Score: 57 Period size: 15 Copynumber: 2.3 Consensus size: 14 63189398 TTGGGGTAGG 63189408 TTTTTCTTTTTCTTT 1 TTTTTCTTTTT-TTT 63189423 TTTTTCTTTTTTTT 1 TTTTTCTTTTTTTT 63189437 TTTT 1 TTTT 63189441 GGGTTAGGTT Statistics Matches: 18, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 14 7 0.39 15 11 0.61 ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91 Consensus pattern (14 bp): TTTTTCTTTTTTTT Found at i:63190751 original size:22 final size:21 Alignment explanation
Indices: 63190693--63190756 Score: 65 Period size: 22 Copynumber: 2.9 Consensus size: 21 63190683 ACGACGAAAT 63190693 TTAATTATAATTTTTTATAAAA 1 TTAATTATAATTTTTTAT-AAA * * * 63190715 TAAAATATAAGTTTTTTATATA 1 TTAATTATAA-TTTTTTATAAA 63190737 TTAATTTATAATTTTATTAT 1 TTAA-TTATAATTTT-TTAT 63190757 TTTTGAAGGA Statistics Matches: 34, Mismatches: 5, Indels: 5 0.77 0.11 0.11 Matches are distributed among these distances: 22 17 0.50 23 17 0.50 ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56 Consensus pattern (21 bp): TTAATTATAATTTTTTATAAA Found at i:63190837 original size:15 final size:15 Alignment explanation
Indices: 63190817--63190848 Score: 55 Period size: 15 Copynumber: 2.1 Consensus size: 15 63190807 TAATTTTATT 63190817 ATATATTAATCTATA 1 ATATATTAATCTATA * 63190832 ATATATTAATTTATA 1 ATATATTAATCTATA 63190847 AT 1 AT 63190849 TTTTTTATTT Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50 Consensus pattern (15 bp): ATATATTAATCTATA Found at i:63194358 original size:2 final size:2 Alignment explanation
Indices: 63194351--63194407 Score: 114 Period size: 2 Copynumber: 28.5 Consensus size: 2 63194341 ATTGAAAAAG 63194351 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 63194393 AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT A 63194408 CCTTAGAATA Statistics Matches: 55, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 55 1.00 ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49 Consensus pattern (2 bp): AT Found at i:63197704 original size:16 final size:16 Alignment explanation
Indices: 63197683--63197713 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 63197673 GGACAGTTTC 63197683 AAATAAATAAAATATA 1 AAATAAATAAAATATA * 63197699 AAATAAATAACATAT 1 AAATAAATAAAATAT 63197714 GTAAAAGTTT Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 16 14 1.00 ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26 Consensus pattern (16 bp): AAATAAATAAAATATA Found at i:63197729 original size:26 final size:28 Alignment explanation
Indices: 63197697--63197799 Score: 99 Period size: 27 Copynumber: 3.8 Consensus size: 28 63197687 AAATAAAATA * * 63197697 TAAAATAAATAACATATG-TAAAA-GTT 1 TAAAATAAATAATATATGAAAAAAGGTT * 63197723 TGAAATAAATAATATATGAAAAAAAGGTT 1 TAAAATAAATAATATATG-AAAAAAGGTT ** 63197752 TAAAATAAATAATATAT-AAAAATA-AAT 1 TAAAATAAATAATATATGAAAAA-AGGTT * 63197779 TAAAATAGATAATATAT-AAAA 1 TAAAATAAATAATATATGAAAA 63197800 TAATTTAAAA Statistics Matches: 66, Mismatches: 7, Indels: 7 0.82 0.09 0.09 Matches are distributed among these distances: 26 16 0.24 27 26 0.39 28 5 0.08 29 19 0.29 ACGTcount: A:0.63, C:0.01, G:0.07, T:0.29 Consensus pattern (28 bp): TAAAATAAATAATATATGAAAAAAGGTT Found at i:63197757 original size:29 final size:27 Alignment explanation
Indices: 63197697--63198027 Score: 181 Period size: 26 Copynumber: 12.3 Consensus size: 27 63197687 AAATAAAATA * ** 63197697 TAAAATAAATAACATAT-GTAAAAGTT 1 TAAAATAAATAATATATAAAAAAAGTT * 63197723 TGAAATAAATAATATATGAAAAAAAGGTT 1 TAAAATAAATAATATAT-AAAAAAA-GTT * 63197752 TAAAATAAATAATATATAAAAATAA-AT 1 TAAAATAAATAATATATAAAAA-AAGTT * * 63197779 TAAAATAGATAATATATAAAATAA-TT 1 TAAAATAAATAATATATAAAAAAAGTT 63197805 T--AA-AAATAATATATAACAAAACAGTT 1 TAAAATAAATAATATATAA-AAAA-AGTT * **** 63197831 TCAAAT--ATACA-ATAT-AAATTTTTT 1 TAAAATAAATA-ATATATAAAAAAAGTT * * * 63197855 TAAAATAAGTAACATAT-AAAACAGTT 1 TAAAATAAATAATATATAAAAAAAGTT * 63197881 TAAACTAAATAATATATAAAATAGATAAAAGTT 1 TAAAATAAATAATATAT---A-A-A-AAAAGTT * 63197914 TGAAATAAATAATATAT-AAAAAAGTT 1 TAAAATAAATAATATATAAAAAAAGTT ** * 63197940 TAAAATGTATAATATATAAAAAAA-CT 1 TAAAATAAATAATATATAAAAAAAGTT * ** * 63197966 AAAAATAGTTAATATATAAAATAA--T 1 TAAAATAAATAATATATAAAAAAAGTT * * 63197991 TCAAA-AAATAAAATATAATAAAACAGTT 1 TAAAATAAATAATATATAA-AAAA-AGTT * 63198019 TAAAGTAAA 1 TAAAATAAA 63198028 AAGTCAAAGA Statistics Matches: 234, Mismatches: 44, Indels: 51 0.71 0.13 0.16 Matches are distributed among these distances: 23 12 0.05 24 22 0.09 25 11 0.05 26 90 0.38 27 35 0.15 28 17 0.07 29 24 0.10 31 1 0.00 32 1 0.00 33 21 0.09 ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31 Consensus pattern (27 bp): TAAAATAAATAATATATAAAAAAAGTT Found at i:63197817 original size:23 final size:24 Alignment explanation
Indices: 63197758--63197820 Score: 83 Period size: 23 Copynumber: 2.5 Consensus size: 24 63197748 GGTTTAAAAT 63197758 AAATAATATATAAAAATAAATTAAA 1 AAATAATATAT-AAAATAAATTAAA * 63197783 ATAGATAATATATAAAAT-AATTTAA 1 A-A-ATAATATATAAAATAAATTAAA 63197808 AAATAATATATAA 1 AAATAATATATAA 63197821 CAAAACAGTT Statistics Matches: 35, Mismatches: 1, Indels: 6 0.83 0.02 0.14 Matches are distributed among these distances: 23 11 0.31 24 1 0.03 25 8 0.23 26 6 0.17 27 9 0.26 ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32 Consensus pattern (24 bp): AAATAATATATAAAATAAATTAAA Found at i:63197969 original size:59 final size:59 Alignment explanation
Indices: 63197857--63197969 Score: 147 Period size: 59 Copynumber: 1.9 Consensus size: 59 63197847 AATTTTTTTA * * * * 63197857 AAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAGATAAAAGTTTG 1 AAATAAATAACATATAAAAAAGTTTAAAATAAATAATATATAAAATAAATAAAAGTTTG * ** 63197916 AAATAAATAATATATAAAAAAGTTTAAAATGTATAATATATAAAA-AAACTAAAA 1 AAATAAATAACATATAAAAAAGTTTAAAATAAATAATATATAAAATAAA-TAAAA 63197970 ATAGTTAATA Statistics Matches: 46, Mismatches: 7, Indels: 2 0.84 0.13 0.04 Matches are distributed among these distances: 58 2 0.04 59 44 0.96 ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28 Consensus pattern (59 bp): AAATAAATAACATATAAAAAAGTTTAAAATAAATAATATATAAAATAAATAAAAGTTTG Found at i:63199303 original size:14 final size:15 Alignment explanation
Indices: 63199275--63199308 Score: 52 Period size: 14 Copynumber: 2.3 Consensus size: 15 63199265 TAGACTATTC 63199275 ATTTTTTGGACTTTT 1 ATTTTTTGGACTTTT * 63199290 ATTTTTTGG-GTTTT 1 ATTTTTTGGACTTTT 63199304 ATTTT 1 ATTTT 63199309 ATAAACTGGG Statistics Matches: 18, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 14 9 0.50 15 9 0.50 ACGTcount: A:0.12, C:0.03, G:0.15, T:0.71 Consensus pattern (15 bp): ATTTTTTGGACTTTT Found at i:63199617 original size:50 final size:51 Alignment explanation
Indices: 63199540--63199635 Score: 135 Period size: 50 Copynumber: 1.9 Consensus size: 51 63199530 GAGATTAGAA * 63199540 TTGTAGCTTCAATCTTCTTTACTGCAACTTCAG-GAAGATAAGATTTGTGGT 1 TTGTAGCTTCAATCTTCTCTACTGCAACTTCAGAG-AGATAAGATTTGTGGT * 63199591 TTGTAGCTT-AAT-TTACTCTACTGCAACTTCAGAGAGATAATATTT 1 TTGTAGCTTCAATCTT-CTCTACTGCAACTTCAGAGAGATAAGATTT 63199636 TTTATCTTCA Statistics Matches: 41, Mismatches: 2, Indels: 5 0.85 0.04 0.10 Matches are distributed among these distances: 49 2 0.05 50 29 0.71 51 10 0.24 ACGTcount: A:0.28, C:0.16, G:0.17, T:0.40 Consensus pattern (51 bp): TTGTAGCTTCAATCTTCTCTACTGCAACTTCAGAGAGATAAGATTTGTGGT Found at i:63199717 original size:44 final size:45 Alignment explanation
Indices: 63199502--63199721 Score: 124 Period size: 44 Copynumber: 4.8 Consensus size: 45 63199492 GGAATTAGTG * * ** * * * * 63199502 CTTCAATCCACTCCACTAAAACTTCAGAGAGATTAGAATTGT-AG 1 CTTCAATCTACTCTACTGCAACTTCAGAGAGATAAGACTAGTGAT * * * * * 63199546 CTTCAATCTTCTTTACTGCAACTTCAG-GAAGATAAGATTTGTGGT 1 CTTCAATCTACTCTACTGCAACTTCAGAG-AGATAAGACTAGTGAT * * * * ** * 63199591 TTGTAGCTTAATTTACTCTACTGCAACTTCAGAGAGATAATATTTTTTAT 1 CT-T--C--AATCTACTCTACTGCAACTTCAGAGAGATAAGACTAGTGAT * * * 63199641 CTTCAATCTACTCCT-CTGCAACTTTAGGGAGATAAGACTAGTGGT 1 CTTCAATCTACT-CTACTGCAACTTCAGAGAGATAAGACTAGTGAT * * 63199686 -TTCTATCTACTCTACTGTAACTTCAGAGAGATAAGA 1 CTTCAATCTACTCTACTGCAACTTCAGAGAGATAAGA 63199722 TTCGCCATAA Statistics Matches: 134, Mismatches: 32, Indels: 20 0.72 0.17 0.11 Matches are distributed among these distances: 43 3 0.02 44 61 0.46 45 30 0.22 46 3 0.02 47 1 0.01 48 1 0.01 49 1 0.01 50 33 0.25 51 1 0.01 ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35 Consensus pattern (45 bp): CTTCAATCTACTCTACTGCAACTTCAGAGAGATAAGACTAGTGAT Found at i:63199873 original size:96 final size:92 Alignment explanation
Indices: 63199749--63200142 Score: 220 Period size: 96 Copynumber: 4.2 Consensus size: 92 63199739 GATCCGACCT * * * * 63199749 ACTGCAACTTTAGAGG-TATAAGATTTGTGACTTATAGTCATAATCTATTCCACTGCAACTTTAG 1 ACTGCAACTTCA-AGGAGATAAGATTTGTGACTT-T--TC-TAATCTACTCCACTGCAACTTCAG 63199813 GGAAAAAAGATTTGCTATCTTCAACCTGCTCC 61 GGAAAAAAGATTTGCTATCTTCAACCTGCTCC * 63199845 ACTGCAACTTCAAGGAGATAAGGTTTGTGTA-TTTT-T-ATCCTACTCCACTGCAACTTCAGGGA 1 ACTGCAACTTCAAGGAGATAAGATTTGTG-ACTTTTCTAAT-CTACTCCACTGCAACTTCAGGGA * * ** * * 63199907 GATAAGGA-TTG-TGGCTTCGATCTGCTCC 64 -AAAAAGATTTGCTATCTTCAACCTGCTCC * * * * * * * * * * 63199935 AATGTAATTTCAGGGAGA-AGAGGTTTGT-AGC--TTC-GATCTACTCCGCTGGAACCTCAAGGA 1 ACTGCAACTTCAAGGAGATA-AGATTTGTGA-CTTTTCTAATCTACTCCACTGCAACTTCAGGGA * * * * 63199995 GATAAGAATTGGTAAT-TTCAACCTGCTCC 64 AAAAAGATTTGCT-ATCTTCAACCTGCTCC * * * ** * 63200024 ACTGCAACTTCAAGGAGATGAGATTTGT-AATTTGTAGCCTTAATTTGTTCCACTGCAACTTTAG 1 ACTGCAACTTCAAGGAGATAAGATTTGTGACTTT-T---C-TAATCTACTCCACTGCAACTTCAG * * ** 63200088 GGAAATAAGATTCGCTATCTTCAGTCTGCTCC 61 GGAAAAAAGATTTGCTATCTTCAACCTGCTCC * * 63200120 ACTGCAACTTTAGGGAGATAAGA 1 ACTGCAACTTCAAGGAGATAAGA 63200143 CTTGCTTTTT Statistics Matches: 224, Mismatches: 52, Indels: 44 0.70 0.16 0.14 Matches are distributed among these distances: 87 3 0.01 88 25 0.11 89 37 0.17 90 38 0.17 91 26 0.12 92 5 0.02 93 1 0.00 94 1 0.00 95 6 0.03 96 81 0.36 97 1 0.00 ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31 Consensus pattern (92 bp): ACTGCAACTTCAAGGAGATAAGATTTGTGACTTTTCTAATCTACTCCACTGCAACTTCAGGGAAA AAAGATTTGCTATCTTCAACCTGCTCC Found at i:63200051 original size:89 final size:90 Alignment explanation
Indices: 63199831--63200052 Score: 225 Period size: 89 Copynumber: 2.5 Consensus size: 90 63199821 GATTTGCTAT * * ** 63199831 CTTCAACCTGCTCCACTGCAACTTCAAGGAGATAAGGTTTGT-GTATTTTTATCCTACTCCACTG 1 CTTCAACCTGCTCCACTGCAACTTCAAGGAGATGAGGTTTGTAG-ACTTCGATCCTACTCCACTG * * * ** 63199895 CAACTTCAGGGAGATAAGGATTGTGG 65 CAACCTCAAGGAGATAAGAATTGTAA * * * * * * * * * 63199921 CTTCGATCTGCTCCAATGTAATTTCAGGGAGAAGAGGTTTGTAG-CTTCGAT-CTACTCCGCTGG 1 CTTCAACCTGCTCCACTGCAACTTCAAGGAGATGAGGTTTGTAGACTTCGATCCTACTCCACTGC 63199984 AACCTCAAGGAGATAAGAATTGGTAA 66 AACCTCAAGGAGATAAGAATT-GTAA * * 63200010 TTTCAACCTGCTCCACTGCAACTTCAAGGAGATGAGATTTGTA 1 CTTCAACCTGCTCCACTGCAACTTCAAGGAGATGAGGTTTGTA 63200053 ATTTGTAGCC Statistics Matches: 103, Mismatches: 27, Indels: 5 0.76 0.20 0.04 Matches are distributed among these distances: 88 28 0.27 89 40 0.39 90 34 0.33 91 1 0.01 ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30 Consensus pattern (90 bp): CTTCAACCTGCTCCACTGCAACTTCAAGGAGATGAGGTTTGTAGACTTCGATCCTACTCCACTGC AACCTCAAGGAGATAAGAATTGTAA Found at i:63200141 original size:45 final size:45 Alignment explanation
Indices: 63199797--63200191 Score: 171 Period size: 45 Copynumber: 8.7 Consensus size: 45 63199787 CATAATCTAT * * * * 63199797 TCCACTGCAACTTTAGGGAAAAAAGATTTGCTATCTTCAACCTGC 1 TCCACTGCAACTTTAGGGAGATAAGATTCGCTATCTTCAATCTGC * * * * * ** * 63199842 TCCACTGCAACTTCAAGGAGATAAGGTTTGTGTAT-TTTTATCCTAC 1 TCCACTGCAACTTTAGGGAGATAAGATTCG-CTATCTTCAAT-CTGC * ** * 63199888 TCCACTGCAACTTCAGGGAGATAAGGATT-G-TGGCTTCGATCTGC 1 TCCACTGCAACTTTAGGGAGATAA-GATTCGCTATCTTCAATCTGC * * * * * * * 63199932 TCCAATGTAA-TTTCAGGGAGA-AGAGGTTTG-TAGCTTCGATCTAC 1 TCCACTGCAACTTT-AGGGAGATA-AGATTCGCTATCTTCAATCTGC * * * * * * * 63199976 TCCGCTGGAACCTCAAGGAGATAAGAATT-GGTAAT-TTCAACCTGC 1 TCCACTGCAACTTTAGGGAGATAAG-ATTCGCT-ATCTTCAATCTGC * * * * * * * 63200021 TCCACTGCAACTTCAAGGAGATGAGATTTG-TAATTTGTAGCCTTAATTTGT 1 TCCACTGCAACTTTAGGGAGATAAGATTCGCT-ATCT-T---C--AATCTGC * * 63200072 TCCACTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTGC 1 TCCACTGCAACTTTAGGGAGATAAGATTCGCTATCTTCAATCTGC * * * 63200117 TCCACTGCAACTTTAGGGAGATAAGACTT-GCTTTTTTCAATCTGT 1 TCCACTGCAACTTTAGGGAGATAAGA-TTCGCTATCTTCAATCTGC * * * * 63200162 TTCACTGCAAGTTCAAGGAGATAAGATTCG 1 TCCACTGCAACTTTAGGGAGATAAGATTCG 63200192 TCATAATAAC Statistics Matches: 268, Mismatches: 59, Indels: 46 0.72 0.16 0.12 Matches are distributed among these distances: 43 6 0.02 44 58 0.22 45 131 0.49 46 34 0.13 47 4 0.01 49 1 0.00 50 1 0.00 51 32 0.12 52 1 0.00 ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32 Consensus pattern (45 bp): TCCACTGCAACTTTAGGGAGATAAGATTCGCTATCTTCAATCTGC Found at i:63204043 original size:5 final size:5 Alignment explanation
Indices: 63204033--63204080 Score: 50 Period size: 4 Copynumber: 10.0 Consensus size: 5 63204023 TGGCCTCTCC 63204033 CTTTT CTTTT CTTTTT CTTTT C-TTT C-TTT C-TTT CTTTCT CTTTT -TTTT 1 CTTTT CTTTT C-TTTT CTTTT CTTTT CTTTT CTTTT CTTT-T CTTTT CTTTT 63204081 TAAGTGAAGT Statistics Matches: 40, Mismatches: 0, Indels: 7 0.85 0.00 0.15 Matches are distributed among these distances: 4 16 0.40 5 14 0.35 6 10 0.25 ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79 Consensus pattern (5 bp): CTTTT Found at i:63204054 original size:16 final size:16 Alignment explanation
Indices: 63204033--63204081 Score: 57 Period size: 16 Copynumber: 3.0 Consensus size: 16 63204023 TGGCCTCTCC 63204033 CTTTTCTTTTCTTTTT 1 CTTTTCTTTTCTTTTT 63204049 CTTTTC-TTTCTTTCTTT 1 CTTTTCTTTTC-TT-TTT 63204066 CTTTCTCTTTT-TTTTT 1 CTTT-TCTTTTCTTTTT 63204082 AAGTGAAGTA Statistics Matches: 29, Mismatches: 0, Indels: 8 0.78 0.00 0.22 Matches are distributed among these distances: 15 4 0.14 16 11 0.38 17 9 0.31 18 2 0.07 19 3 0.10 ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80 Consensus pattern (16 bp): CTTTTCTTTTCTTTTT Found at i:63210786 original size:22 final size:24 Alignment explanation
Indices: 63210755--63210821 Score: 59 Period size: 22 Copynumber: 2.8 Consensus size: 24 63210745 ACTTATAATA * 63210755 AATAATAATAAAACAGTTTCAAAT 1 AATAACAATAAAACAGTTTCAAAT * * 63210779 -AT-ACAATATAAA-AATTTTAAAT 1 AATAACAATA-AAACAGTTTCAAAT 63210801 AAATAACATATAAAACAGTTT 1 -AATAACA-ATAAAACAGTTT 63210822 AAACTAAATA Statistics Matches: 33, Mismatches: 4, Indels: 10 0.70 0.09 0.21 Matches are distributed among these distances: 22 13 0.39 23 5 0.15 24 2 0.06 25 6 0.18 26 7 0.21 ACGTcount: A:0.58, C:0.07, G:0.03, T:0.31 Consensus pattern (24 bp): AATAACAATAAAACAGTTTCAAAT Found at i:63210829 original size:26 final size:25 Alignment explanation
Indices: 63210724--63211555 Score: 147 Period size: 26 Copynumber: 33.7 Consensus size: 25 63210714 GGACAATTTC * ** 63210724 AAATAAATAATATATAAAAAAACTT 1 AAATAAATAATATATAAAACAGTTT 63210749 ATAATAAATAATA-ATAAAACAGTTT 1 A-AATAAATAATATATAAAACAGTTT * 63210774 CAAAT--ATACA-ATATAAAA-ATTTT 1 -AAATAAATA-ATATATAAAACAGTTT * 63210797 AAATAAATAACATATAAAACAGTTT 1 AAATAAATAATATATAAAACAGTTT 63210822 AAACTAAATAATATATAAAA-A---T 1 AAA-TAAATAATATATAAAACAGTTT * * ** * 63210844 -AAT-AA-CATATGTAAAA-GTTTG 1 AAATAAATAATATATAAAACAGTTT * 63210865 AAATAAATAATATATGAAAAAAAGGTTT 1 AAATAAATAATATAT--AAAACA-GTTT * * * * 63210893 AAAATACATAATATATAAAAAAAACTTA 1 -AAATAAATAATATAT--AAAACAGTTT * 63210921 AAATAGATAATATATAAATA-A-TTT 1 AAATAAATAATATATAAA-ACAGTTT * * 63210945 AAAAATAAT-ATATAATAAAACAATTT 1 AAATA-AATAATAT-ATAAAACAGTTT * ***** 63210971 CAAAT--ATAAAATATAATTTTTTTT 1 -AAATAAATAATATATAAAACAGTTT * * 63210995 AAAATAAGTAACATATAAAACAGTTT 1 -AAATAAATAATATATAAAACAGTTT 63211021 AAACTAAATAATATAT-AAA-A---T 1 AAA-TAAATAATATATAAAACAGTTT * * ** * 63211042 AAAT-AA-CATATGTAAAA-GTTTG 1 AAATAAATAATATATAAAACAGTTT * * 63211064 ACATAATA-ATATATGA-AAAAAAGGTTT 1 AAATAA-ATA-ATAT-ATAAAACA-GTTT * * * 63211091 AAAATAAATAATATATAAAAAAAACTTA 1 -AAATAAATAATATAT--AAAACAGTTT * * * 63211119 AAATAGATAATATATAAAATAATTT 1 AAATAAATAATATATAAAACAGTTT * 63211144 AAAAATAAT-ATATAATAAAACAGTTT 1 AAATA-AATAATAT-ATAAAACAGTTT * * **** 63211170 CAAATATACAATATAT---TTTTTTT 1 -AAATAAATAATATATAAAACAGTTT * 63211193 AAAAAAAATAAGTAACATATAAAACAGTTT 1 -AAATAAATAA-T---ATATAAAACAGTTT * 63211223 AAACTAGATAATATAT-AAA-A---T 1 AAA-TAAATAATATATAAAACAGTTT * * 63211244 AGATAAAT--TATGT-AAA-AGTTT 1 AAATAAATAATATATAAAACAGTTT * 63211265 GAAATAAATAATATATAAAAAAGTTT 1 -AAATAAATAATATATAAAACAGTTT * * * 63211291 AAAATAAATAATATATAAAAAAACTTA 1 -AAATAAATAATATAT-AAAACAGTTT * * * 63211318 AAATAGATAATATATAAAATAATTT 1 AAATAAATAATATATAAAACAGTTT * * 63211343 -AA-AAATCATATATAACAAAACTGTTT 1 AAATAAAT-A-ATAT-ATAAAACAGTTT * * ** 63211369 CAAATATACAA-A-AT-AAA-TTTTT 1 -AAATAAATAATATATAAAACAGTTT * * 63211391 AAAAATAAGTAACATATAAAACAGTTT 1 --AAATAAATAATATATAAAACAGTTT 63211418 AAACTAAATAATATAT-AAA-A---T 1 AAA-TAAATAATATATAAAACAGTTT * * * ** * 63211439 AGAT-AA-CATATGTAAAA-GTTTG 1 AAATAAATAATATATAAAACAGTTT * 63211461 AAATAAATAATATATAAAAAAAGTTT 1 AAATAAATAATATAT-AAAACAGTTT * * * 63211487 AAAATAAATAATATATAAAAAAAACTTA 1 -AAATAAATAATATAT--AAAACAGTTT * * * * 63211515 AAATAGATCATATATAAAATAATTT 1 AAATAAATAATATATAAAACAGTTT 63211540 AAA-AAATAATATATAA 1 AAATAAATAATATATAA 63211556 TAAAATAGTT Statistics Matches: 592, Mismatches: 127, Indels: 177 0.66 0.14 0.20 Matches are distributed among these distances: 18 27 0.05 19 12 0.02 20 7 0.01 21 13 0.02 22 25 0.04 23 37 0.06 24 77 0.13 25 104 0.18 26 135 0.23 27 90 0.15 28 24 0.04 29 33 0.06 30 8 0.01 ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31 Consensus pattern (25 bp): AAATAAATAATATATAAAACAGTTT Found at i:63210849 original size:42 final size:44 Alignment explanation
Indices: 63210797--63210885 Score: 123 Period size: 42 Copynumber: 2.1 Consensus size: 44 63210787 TAAAAATTTT 63210797 AAATAAATAACATAT-AAAACAGTTT-AAACTAAATAATATAT-AA 1 AAATAAATAACATATGAAAA-AGTTTGAAA-TAAATAATATATGAA * 63210840 AAAT-AATAACATATGTAAAAGTTTGAAATAAATAATATATGAA 1 AAATAAATAACATATGAAAAAGTTTGAAATAAATAATATATGAA 63210883 AAA 1 AAA 63210886 AAGGTTTAAA Statistics Matches: 42, Mismatches: 1, Indels: 6 0.86 0.02 0.12 Matches are distributed among these distances: 42 27 0.64 43 15 0.36 ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28 Consensus pattern (44 bp): AAATAAATAACATATGAAAAAGTTTGAAATAAATAATATATGAA Found at i:63210892 original size:29 final size:28 Alignment explanation
Indices: 63210856--63211185 Score: 108 Period size: 29 Copynumber: 11.9 Consensus size: 28 63210846 TAACATATGT * 63210856 AAAAGTTTGAAATAAATAATATATGAAAA 1 AAAAGTTTAAAATAAATAATATAT-AAAA * * 63210885 AAAGGTTTAAAATACATAATATATAAAA 1 AAAAGTTTAAAATAAATAATATATAAAA * * 63210913 AAAA-CTTAAAATAGATAATATAT--AA 1 AAAAGTTTAAAATAAATAATATATAAAA * 63210938 ATAA-TTT--AA-AAATAATATATAATAA 1 AAAAGTTTAAAATAAATAATATATAA-AA * * * 63210963 AACAA-TTTCAAATATAAAATATAATTTTTTTTAAA 1 AA-AAGTTT-AAA-AT--AA-ATAA--TATATAAAA * * * * 63210998 ATAAG--TAACATATAA-AACAGTTTAAACTA 1 AAAAGTTTAAAATA-AATAATA-TATAAA--A * ** 63211027 AATAA-TATATAAAATAAATAACATAT--GT 1 AA-AAGT-T-TAAAATAAATAATATATAAAA * * 63211055 AAAAGTTTGACAT-AATAATATATGAAAA 1 AAAAGTTTAAAATAAATAATATAT-AAAA * 63211083 AAAGGTTTAAAATAAATAATATATAAAA 1 AAAAGTTTAAAATAAATAATATATAAAA * * 63211111 AAAA-CTTAAAATAGATAATATAT-AAA 1 AAAAGTTTAAAATAAATAATATATAAAA * 63211137 ATAA-TTT--AA-AAATAATATATAATAA 1 AAAAGTTTAAAATAAATAATATATAA-AA * * * * 63211162 AACAGTTTCAAATATACAATATAT 1 AAAAGTTTAAAATAAATAATATAT 63211186 TTTTTTTAAA Statistics Matches: 224, Mismatches: 41, Indels: 72 0.66 0.12 0.21 Matches are distributed among these distances: 22 10 0.04 23 12 0.05 24 3 0.01 25 23 0.10 26 20 0.09 27 42 0.19 28 31 0.14 29 45 0.20 30 4 0.02 31 2 0.01 32 6 0.03 33 13 0.06 34 6 0.03 35 3 0.01 36 4 0.02 ACGTcount: A:0.60, C:0.04, G:0.05, T:0.32 Consensus pattern (28 bp): AAAAGTTTAAAATAAATAATATATAAAA Found at i:63210906 original size:27 final size:26 Alignment explanation
Indices: 63210865--63210938 Score: 85 Period size: 27 Copynumber: 2.7 Consensus size: 26 63210855 TAAAAGTTTG ** 63210865 AAATAAATAATATATGAAAAAAAGGTTTA 1 AAAT-AATAATATAT-AAAAAAA-ACTTA 63210894 AAATACATAATATATAAAAAAAACTTA 1 AAATA-ATAATATATAAAAAAAACTTA 63210921 AAATAGATAATATATAAA 1 AAATA-ATAATATATAAA 63210939 TAATTTAAAA Statistics Matches: 41, Mismatches: 3, Indels: 4 0.85 0.06 0.08 Matches are distributed among these distances: 27 20 0.49 28 8 0.20 29 13 0.32 ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27 Consensus pattern (26 bp): AAATAATAATATATAAAAAAAACTTA Found at i:63210933 original size:25 final size:24 Alignment explanation
Indices: 63210900--63210986 Score: 63 Period size: 25 Copynumber: 3.5 Consensus size: 24 63210890 TTTAAAATAC 63210900 ATAAT-ATATAAAAAAAACTTAAA 1 ATAATAATATAAAAAAAACTTAAA * * * 63210923 ATAGATAATATATAAATAATTTAAAA 1 ATA-ATAATATAAAAAAAACTT-AAA * 63210949 ATAAT-ATATAATAAAACAATTTCAAA 1 ATAATAATATAA-AAAA-AACTT-AAA 63210975 TATAA-AATATAA 1 -ATAATAATATAA 63210987 TTTTTTTTAA Statistics Matches: 51, Mismatches: 6, Indels: 10 0.76 0.09 0.15 Matches are distributed among these distances: 23 3 0.06 24 7 0.14 25 17 0.33 26 14 0.27 27 10 0.20 ACGTcount: A:0.64, C:0.03, G:0.01, T:0.31 Consensus pattern (24 bp): ATAATAATATAAAAAAAACTTAAA Found at i:63211114 original size:199 final size:197 Alignment explanation
Indices: 63210724--63211566 Score: 1274 Period size: 199 Copynumber: 4.3 Consensus size: 197 63210714 GGACAATTTC * * * * * 63210724 AAATAAATAATATATAAAAAAACTT-ATAATAA-ATAATAATAAAACAGTTTCAAATATACAATA 1 AAATAGATAATATATAAAATAATTTAAAAATAATAT-ATAATAAAACAGTTTCAAATATAAAATA ** * 63210787 TAAAAATTTT-AAATAAATAACATATAAAACAGTTTAAACTAAATAATATATAAAA-ATAATAAC 65 TAAATTTTTTAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATA-AATAAC * 63210850 ATATGTAAAAGTTTGAAATAAATAATATATGAAAAAAAGGTTTAAAATACATAATATATAAAAAA 129 ATATGTAAAAGTTTGAAATAAATAATATAT-AAAAAAA-GTTTAAAATAAATAATATATAAAAAA 63210915 AACTTA 192 AACTTA * 63210921 AAATAGATAATATAT-AAATAATTTAAAAATAATATATAATAAAACAATTTCAAATATAAAATAT 1 AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATAAAATAT * 63210985 AATTTTTTTTAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAAATAACA 66 AA-ATTTTTTAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAAATAACA * 63211050 TATGTAAAAGTTTGACAT-AATAATATATGAAAAAAAGGTTTAAAATAAATAATATATAAAAAAA 130 TATGTAAAAGTTTGAAATAAATAATATAT-AAAAAAA-GTTTAAAATAAATAATATATAAAAAAA 63211114 ACTTA 193 ACTTA * 63211119 AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATACAATAT 1 AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATAAAATAT ** * * 63211184 ATTTTTTTTAAAAAAAATAAGTAACATATAAAACAGTTTAAACTAGATAATATATAAAATAGATA 66 AAATTTTTT----AAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAAATA 63211249 A-ATTATGTAAAAGTTTGAAATAAATAATATAT-AAAAAAGTTTAAAATAAATAATATAT-AAAA 127 ACA-TATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGTTTAAAATAAATAATATATAAAAA 63211311 AAACTTA 191 AAACTTA * * * 63211318 AAATAGATAATATATAAAATAATTTAAAAATCATATATAACAAAACTGTTTCAAATATACAAA-A 1 AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATA-AAATA * * 63211382 TAAATTTTTAAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAGATAACA 65 TAAATTTTTTAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAAATAACA 63211447 TATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGTTTAAAATAAATAATATATAAAAAAAAC 130 TATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGTTTAAAATAAATAATATATAAAAAAAAC 63211512 TTA 195 TTA * * 63211515 AAATAGATCATATATAAAATAATTTAAAAAATAATATATAATAAAATAGTTT 1 AAATAGATAATATATAAAATAATTT-AAAAATAATATATAATAAAACAGTTT 63211567 AAAGTAAAAA Statistics Matches: 598, Mismatches: 31, Indels: 33 0.90 0.05 0.05 Matches are distributed among these distances: 195 81 0.14 196 34 0.06 197 84 0.14 198 100 0.17 199 191 0.32 200 23 0.04 201 7 0.01 202 68 0.11 203 10 0.02 ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31 Consensus pattern (197 bp): AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATAAAATAT AAATTTTTTAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAAATAACAT ATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGTTTAAAATAAATAATATATAAAAAAAACT TA Found at i:63211122 original size:23 final size:24 Alignment explanation
Indices: 63211096--63211163 Score: 75 Period size: 25 Copynumber: 2.8 Consensus size: 24 63211086 GGTTTAAAAT 63211096 AAATAATATATAAAAAAAACTT-A 1 AAATAATATATAAAAAAAACTTAA * * 63211119 AAATAGATAATATATAAAATAATTTAA 1 AAATA-AT-ATATA-AAAAAAACTTAA * 63211146 AAATAATATATAATAAAA 1 AAATAATATATAAAAAAA 63211164 CAGTTTCAAA Statistics Matches: 37, Mismatches: 4, Indels: 7 0.77 0.08 0.15 Matches are distributed among these distances: 23 5 0.14 24 6 0.16 25 10 0.27 26 10 0.27 27 6 0.16 ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29 Consensus pattern (24 bp): AAATAATATATAAAAAAAACTTAA Found at i:63211148 original size:27 final size:26 Alignment explanation
Indices: 63211066--63211163 Score: 103 Period size: 27 Copynumber: 3.7 Consensus size: 26 63211056 AAAGTTTGAC * 63211066 ATAATAATATATGAAAAAAAGGTTTAAA 1 ATAATAATATAT-AAAAAAA-ATTTAAA * 63211094 ATAAATAATATATAAAAAAAACTTAAA 1 AT-AATAATATATAAAAAAAATTTAAA * 63211121 ATAGATAATATAT-AAAATAATTT-AA 1 ATA-ATAATATATAAAAAAAATTTAAA * 63211146 A-AATAATATATAATAAAA 1 ATAATAATATATAAAAAAA 63211164 CAGTTTCAAA Statistics Matches: 61, Mismatches: 6, Indels: 10 0.79 0.08 0.13 Matches are distributed among these distances: 23 9 0.15 24 5 0.08 25 3 0.05 26 9 0.15 27 16 0.26 28 9 0.15 29 10 0.16 ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30 Consensus pattern (26 bp): ATAATAATATATAAAAAAAATTTAAA Done.