Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 218 of 292
Found at i:64014420 original size:74 final size:75
Alignment explanation
Indices: 64014295--64014434 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
64014285 TTGAAAAACG
* *
64014295 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
64014360 TTTTGACAACA
65 TTTTGACAACA
* * *
64014371 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
64014435 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:64014633 original size:72 final size:71
Alignment explanation
Indices: 64014499--64014664 Score: 235
Period size: 72 Copynumber: 2.3 Consensus size: 71
64014489 TGAACAACGT
* * * * *
64014499 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACTTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
64014564 GAGTTG
66 GAGTTG
*
64014570 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
64014635 TGAGTTG
65 TGAGTTG
**
64014642 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
64014665 GGCTTAACTC
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
71 12 0.14
72 69 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:64014807 original size:71 final size:71
Alignment explanation
Indices: 64014664--64014927 Score: 356
Period size: 70 Copynumber: 3.7 Consensus size: 71
64014654 AAAAATTAAA
* * * * *
64014664 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
64014727 GCCCCG
66 GCCCCG
* *
64014733 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
64014798 GTCTTG
66 GCCCCG
* * *
64014804 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
64014867 TGCCCCG
65 TGCCCCG
*
64014874 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
64014928 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 31 0.19
70 61 0.37
71 58 0.35
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:64014885 original size:70 final size:69
Alignment explanation
Indices: 64014664--64014927 Score: 339
Period size: 71 Copynumber: 3.7 Consensus size: 69
64014654 AAAAATTAAA
* ** * * *
64014664 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
64014729 CCCG
66 CCCG
* * *
64014733 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
64014798 GTCTTG
64 GCCCCG
* *
64014804 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
64014869 CCCCG
65 CCCCG
*
64014874 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-AAAAACAAAAATTAAAA
64014928 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 33 0.20
70 56 0.34
71 60 0.36
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:64015083 original size:71 final size:70
Alignment explanation
Indices: 64014962--64015185 Score: 308
Period size: 71 Copynumber: 3.1 Consensus size: 70
64014952 GAGTCAATTT
*
64014962 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG
1 AAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTTG
64015027 AAAACA
65 AAAACA
* * ** *
64015033 ACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTA
1 AAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTG
64015096 AAACACA
65 AAA-ACA
* *
64015103 AAAATTGAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 AAAATT-AAAAATACCTCAGCGTGTCCCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTT
64015168 GAAAAACA
64 G-AAAACA
64015176 AAAATTAAAA
1 AAAATTAAAA
64015186 GGCTTAACTC
Statistics
Matches: 133, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
69 5 0.04
70 8 0.06
71 101 0.76
72 5 0.04
73 11 0.08
74 3 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (70 bp):
AAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTGA
AAACA
Found at i:64015241 original size:258 final size:257
Alignment explanation
Indices: 64014502--64015609 Score: 2047
Period size: 257 Copynumber: 4.3 Consensus size: 257
64014492 ACAACGTAAA
* * * * *
64014502 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCA-CTTCTCGCAATATGA
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATC-TCTCGCAATATGA
64014566 GTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGC
65 GTTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGC
64014631 AATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAA
128 AATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAA
*
64014696 TTTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAG
193 TTT-----A-AAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAG
64014761 TTGATT
252 TTGATT
64014767 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
64014832 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
64014897 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
64014962 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
196 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
64015024 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
64015089 TTGATTAAAACACAAAAATTGAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
66 TTGATTAAAACACAAAAATTG-AAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
64015154 TATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATT
130 TATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATT
64015219 TAAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
195 TAAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
64015282 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
64015347 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
64015412 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
64015477 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
196 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
64015539 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
64015604 TTGATT
66 TTGATT
64015610 TTCCTTGAAA
Statistics
Matches: 832, Mismatches: 9, Indels: 12
0.98 0.01 0.01
Matches are distributed among these distances:
257 386 0.46
258 257 0.31
263 127 0.15
265 61 0.07
266 1 0.00
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (257 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:64015341 original size:71 final size:70
Alignment explanation
Indices: 64015220--64015442 Score: 315
Period size: 70 Copynumber: 3.1 Consensus size: 70
64015210 GAGTCAATTT
*
64015220 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG
1 AAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTTG
64015285 AAAACA
65 AAAACA
* ** *
64015291 AAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTA
1 AAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTG
64015354 AAACACA
65 AAA-ACA
* * *
64015361 AAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG
1 AAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTG
64015426 AAAAACA
65 -AAAACA
64015433 AAAATTAAAA
1 AAAATTAAAA
64015443 GGCTTAACTC
Statistics
Matches: 133, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
69 5 0.04
70 56 0.42
71 54 0.41
72 15 0.11
73 3 0.02
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (70 bp):
AAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTGA
AAACA
Found at i:64015567 original size:515 final size:516
Alignment explanation
Indices: 64014502--64015609 Score: 2062
Period size: 515 Copynumber: 2.1 Consensus size: 516
64014492 ACAACGTAAA
* * * *
64014502 TTGAAAACAGA-AATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCA-CTTCTCGCAATATG
1 TTGAAAACA-ACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATC-TCTCGCAATATG
64014565 AGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAG
64 AGTTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAG
64014630 CAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCA
127 CAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCA
64014695 ATTTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGA
192 ATTT---A-ATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGA
64014760 GTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCA
253 GTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCA
64014825 ATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTC
318 ATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTC
64014890 TAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAG
383 TAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAG
64014955 TCAATTTAAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTT
448 TCAATTTAAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTT
64015020 GATT
513 GATT
64015024 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
64015089 TTGATTAAAACACAAAAATTGAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
66 TTGATTAAAACACAAAAATTG-AAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
64015154 TATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATT
130 TATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATT
*
64015219 T-A-AAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
195 TAATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
64015282 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
260 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
64015347 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
325 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
64015412 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
390 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
64015477 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
455 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
64015539 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
64015604 TTGATT
66 TTGATT
64015610 TTCCTTGAAA
Statistics
Matches: 578, Mismatches: 5, Indels: 13
0.97 0.01 0.02
Matches are distributed among these distances:
515 388 0.67
516 1 0.00
520 18 0.03
521 110 0.19
522 60 0.10
523 1 0.00
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (516 bp):
TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
TGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGT
TGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
TGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTA
AAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:64020665 original size:12 final size:12
Alignment explanation
Indices: 64020645--64020680 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
64020635 TGGGATATGC
*
64020645 AATGTATGAATG
1 AATGCATGAATG
64020657 AATGCATGAATG
1 AATGCATGAATG
64020669 AATGCATGAATG
1 AATGCATGAATG
64020681 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:64032087 original size:38 final size:38
Alignment explanation
Indices: 64032036--64032115 Score: 133
Period size: 38 Copynumber: 2.1 Consensus size: 38
64032026 TTATAAGCCC
* *
64032036 AAAACCCTGAATACCTAATTTGCTAACCTAAAAATCCT
1 AAAACCCTGAATACCCAATCTGCTAACCTAAAAATCCT
*
64032074 AAAACCTTGAATACCCAATCTGCTAACCTAAAAATCCT
1 AAAACCCTGAATACCCAATCTGCTAACCTAAAAATCCT
64032112 AAAA
1 AAAA
64032116 GCCCAAAGCC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.45, C:0.26, G:0.05, T:0.24
Consensus pattern (38 bp):
AAAACCCTGAATACCCAATCTGCTAACCTAAAAATCCT
Found at i:64033441 original size:6 final size:6
Alignment explanation
Indices: 64033432--64033461 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
64033422 TTTTTTATAC
64033432 TTTCAT TTTCAT TTTCAT TTT-AT TTTCAT T
1 TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT T
64033462 AAATACGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTCAT
Found at i:64033458 original size:11 final size:12
Alignment explanation
Indices: 64033432--64033461 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
64033422 TTTTTTATAC
64033432 TTTCATTTTCAT
1 TTTCATTTTCAT
64033444 TTTCATTTT-AT
1 TTTCATTTTCAT
64033455 TTTCATT
1 TTTCATT
64033462 AAATACGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.50
12 9 0.50
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTCATTTTCAT
Found at i:64035110 original size:24 final size:26
Alignment explanation
Indices: 64035068--64035115 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
64035058 ATAAAAAAAA
64035068 CCTTAGTTTTTTTCTTCTTCTTCCTT
1 CCTTAGTTTTTTTCTTCTTCTTCCTT
*
64035094 CCTTA-TTTTTTTC-TCTTTTTCC
1 CCTTAGTTTTTTTCTTCTTCTTCC
64035116 GGCAATTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 8 0.38
26 5 0.24
ACGTcount: A:0.04, C:0.27, G:0.02, T:0.67
Consensus pattern (26 bp):
CCTTAGTTTTTTTCTTCTTCTTCCTT
Found at i:64036896 original size:6 final size:6
Alignment explanation
Indices: 64036887--64036927 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
64036877 TTAGTATTAT
64036887 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATA
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATA
64036928 TATTGTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (6 bp):
ATATAC
Found at i:64042108 original size:2 final size:2
Alignment explanation
Indices: 64042101--64042143 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
64042091 TTTGAATTAT
64042101 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
64042143 T
1 T
64042144 GCATCTCTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:64055740 original size:31 final size:31
Alignment explanation
Indices: 64055705--64055765 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
64055695 TTAGTCACTG
** *
64055705 AACTATTTGAAAGTTTTCATTTAAGTCATTT
1 AACTATTCAAAAGTTTTCATTTAACTCATTT
*
64055736 AACTATTCAAAAGTTTTTATTTAACTCATT
1 AACTATTCAAAAGTTTTCATTTAACTCATT
64055766 GGGCTATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (31 bp):
AACTATTCAAAAGTTTTCATTTAACTCATTT
Found at i:64062111 original size:13 final size:12
Alignment explanation
Indices: 64062093--64062118 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64062083 GAAAAGTATT
64062093 TTAAAAAAATGG
1 TTAAAAAAATGG
64062105 TTAAAAAAATGG
1 TTAAAAAAATGG
64062117 TT
1 TT
64062119 GCTATTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (12 bp):
TTAAAAAAATGG
Found at i:64065666 original size:18 final size:18
Alignment explanation
Indices: 64065643--64065698 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
64065633 AGGACCTCTG
64065643 CATCTTCATCCTCGGAAT
1 CATCTTCATCCTCGGAAT
* * *
64065661 CATCTTCATCATCAGAAC
1 CATCTTCATCCTCGGAAT
64065679 CA-CTTCCATCCTCGGAAT
1 CATCTT-CATCCTCGGAAT
64065697 CA
1 CA
64065699 CTATCATCAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
17 3 0.10
18 28 0.90
ACGTcount: A:0.27, C:0.36, G:0.09, T:0.29
Consensus pattern (18 bp):
CATCTTCATCCTCGGAAT
Found at i:64065700 original size:18 final size:17
Alignment explanation
Indices: 64065646--64065706 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 17
64065636 ACCTCTGCAT
64065646 CTTCATCCTCGGAATCA
1 CTTCATCCTCGGAATCA
* * *
64065663 TCTTCATCATCAGAACCA
1 -CTTCATCCTCGGAATCA
64065681 CTTCCATCCTCGGAATCA
1 CTT-CATCCTCGGAATCA
64065699 CTATCATC
1 CT-TCATC
64065707 ATCATCGTCC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 3 0.09
18 31 0.89
19 1 0.03
ACGTcount: A:0.26, C:0.36, G:0.08, T:0.30
Consensus pattern (17 bp):
CTTCATCCTCGGAATCA
Found at i:64070796 original size:21 final size:21
Alignment explanation
Indices: 64070772--64070815 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
64070762 TTTTTGATCT
*
64070772 TTTTC-CTTTATTTTTTATTTC
1 TTTTCTCTCTATTTTTT-TTTC
*
64070793 TTTTCTCTCTCTTTTTTTTTC
1 TTTTCTCTCTATTTTTTTTTC
64070814 TT
1 TT
64070816 ATTAGTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTTCTCTCTATTTTTTTTTC
Found at i:64074504 original size:26 final size:26
Alignment explanation
Indices: 64074474--64074548 Score: 123
Period size: 26 Copynumber: 2.9 Consensus size: 26
64074464 CCAATTATGG
64074474 AACATTTACCTAACCCATTATCATGA
1 AACATTTACCTAACCCATTATCATGA
* *
64074500 AACATTTACCTAATCCATTATCATGG
1 AACATTTACCTAACCCATTATCATGA
*
64074526 AATATTTACCTAACCCATTATCA
1 AACATTTACCTAACCCATTATCA
64074549 ATTTGTATCA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.33
Consensus pattern (26 bp):
AACATTTACCTAACCCATTATCATGA
Found at i:64076676 original size:2 final size:2
Alignment explanation
Indices: 64076671--64076705 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
64076661 ATTATTGAAA
64076671 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
64076706 AATAAAAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:64080107 original size:131 final size:131
Alignment explanation
Indices: 64079879--64080125 Score: 296
Period size: 131 Copynumber: 1.9 Consensus size: 131
64079869 GGCGATATTC
* * * * * *
64079879 GATACTTGGTAATTCGTGGAATCGTGCCCTAACATGTTGGGTAGCAATTTCTCGTTTTCTCAAAG
1 GATACTTGGCAATTCATGGAATCGTGCCCTAACATGCTGGGTAGCAATTTCTCATTTGCTCAAAA
* * *** ** * *
64079944 TAATCGAAGGTCCCTTTTGAATTTTGCCCATGTCTTTTAAAAATCCCTTAAGCGAATGTGATATA
66 TAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTAAAAATCCATTAAGCGAATGTGATATA
64080009 T
131 T
* * * *
64080010 GATATTTGGCAATTCATGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCATTTGCTTAAAA
1 GATACTTGGCAATTCATGGAATCGTGCCCTAACATGCTGGGTAGCAATTTCTCATTTGCTCAAAA
* **
64080075 TAATCAAATATCCCTTCAAAATTTCATTCATGTCTTCTAAAAATCCATTAA
66 TAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTAAAAATCCATTAA
64080126 AACGAAGGCA
Statistics
Matches: 94, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
131 94 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (131 bp):
GATACTTGGCAATTCATGGAATCGTGCCCTAACATGCTGGGTAGCAATTTCTCATTTGCTCAAAA
TAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTAAAAATCCATTAAGCGAATGTGATATA
T
Found at i:64091089 original size:3 final size:3
Alignment explanation
Indices: 64091081--64091240 Score: 313
Period size: 3 Copynumber: 53.7 Consensus size: 3
64091071 TCTGAAATCT
64091081 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA -AA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
64091128 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
64091176 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
64091224 GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GA
64091241 TGGAGAGGCT
Statistics
Matches: 156, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
2 2 0.01
3 154 0.99
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:64092365 original size:133 final size:133
Alignment explanation
Indices: 64092126--64092401 Score: 367
Period size: 133 Copynumber: 2.1 Consensus size: 133
64092116 GCGAATCCTA
* *** *
64092126 CAGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGTCTTCCTGAAG
1 CAGATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACAAATCTAGACTTCCTGAAG
* * ** *
64092191 TTGCAGTGAAGCAGATTTAAGCTACCAACCTAGCTCCCTAAAGCTGTAGTGGAGTAGGCTGAGGA
66 TTGCAGTGAAGCAGATTGAAGCCACCAACCTAGCTCCCTAAAGCTGTAACGGAGTAGGCTGAAGA
64092256 TTG
131 TTG
* * * *
64092259 TAGATCTCGTTTCCCTGAAGTTGCAGTGGAGCGGATCGACA-ACGACAAATCTTGACTTCCTGAA
1 CAGATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATC-AAAGACGACAAATCTAGACTTCCTGAA
* * *
64092323 GTTGCAGTGAAGCAGACTTGCA-CCACCAACCTAGCTCTCTAAAGTTGTAACGGAGTAGGCTGAA
65 GTTGCAGTGAAGCAGA-TTGAAGCCACCAACCTAGCTCCCTAAAGCTGTAACGGAGTAGGCTGAA
64092387 GATTG
129 GATTG
64092392 CAGATCTCGT
1 CAGATCTCGT
64092402 CTCCAGTGGA
Statistics
Matches: 123, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
133 118 0.96
134 5 0.04
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (133 bp):
CAGATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACAAATCTAGACTTCCTGAAG
TTGCAGTGAAGCAGATTGAAGCCACCAACCTAGCTCCCTAAAGCTGTAACGGAGTAGGCTGAAGA
TTG
Found at i:64092778 original size:9 final size:9
Alignment explanation
Indices: 64092764--64092789 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
64092754 ACACAAAACA
64092764 AAACAAAAT
1 AAACAAAAT
64092773 AAACAAAAT
1 AAACAAAAT
64092782 AAACAAAA
1 AAACAAAA
64092790 AAAATAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.12, G:0.00, T:0.08
Consensus pattern (9 bp):
AAACAAAAT
Found at i:64095729 original size:131 final size:131
Alignment explanation
Indices: 64095423--64096060 Score: 459
Period size: 131 Copynumber: 4.9 Consensus size: 131
64095413 ATTAAGAATT
* ** * * * *
64095423 CTTTAAAACGAAGGCGATATTCGATACTTGGTAATTCGTGGAATCGTGCCCTAACGTGTTGGGTT
1 CTTTAAAACGAAGGCAATATTCGATGTTTGGCAATTCG-AGAATCGTGCCCTATCGTGCTGGGTT
* * ** ** ** * *
64095488 GCAATTTCTCATTTGCTCAAAGTAATCGAAGGTCCCTTTTGAATTTTGCCCATGTCTTTTAAAAA
65 GCAATTTCTCATTTGCTTAAAATAATCGAATATCCCTTCAGAATTTCACTCATGTCTTCTAAAAA
64095553 TC
130 TC
* * ** * * *
64095555 CCTT-AAGCGAAGGTGATATAT-GATATTTGGCAATGC-ATGGAATCGTGCCCTAACGTGCTGGG
1 CTTTAAAACGAAGGCAATAT-TCGATGTTTGGCAATTCGA--GAATCGTGCCCTATCGTGCTGGG
* * *
64095617 TTGCAATTTCTCATTTGCTTAAAATAATCAAATATCCCTTCAAAATTTCATTCATGTCTTCTAAA
63 TTGCAATTTCTCATTTGCTTAAAATAATCGAATATCCCTTCAGAATTTCACTCATGTCTTCTAAA
64095682 AATC
128 AATC
* * * *
64095686 CTTTAAAACGAAGGCAATATTCGGTGTTTGACAATTCGAGAATCATGCCCTATCGCGCTGGGTTG
1 CTTTAAAACGAAGGCAATATTCGATGTTTGGCAATTCGAGAATCGTGCCCTATCGTGCTGGGTTG
** * * * * * * ** *
64095751 TGATTTCTCGTTTGCTCAAAACAATAGAATATTCCTTTAGGTTTTCACTCATGT-TTGTTAAAAA
66 CAATTTCTCATTTGCTTAAAATAATCGAATATCCCTTCAGAATTTCACTCATGTCTT-CTAAAAA
64095815 -C
130 TC
* * * * * *
64095816 CTTTCAAAACAAAGG--ATGTTTGAGGTTTGGCGATTTGAGAATCGTGCCCTATCGTGCTGGGTT
1 CTTT-AAAACGAAGGCAATATTCGATGTTTGGCAATTCGAGAATCGTGCCCTATCGTGCTGGGTT
** * * ** * * * * *
64095879 GCGCTTTTTCATTTG-TTCTAAACGATCGAAGATCCCTTCGGAATTTCATTCACGTTTTCTAAAA
65 GCAATTTCTCATTTGCTT-AAAATAATCGAATATCCCTTCAGAATTTCACTCATGTCTTCTAAAA
*
64095943 ACC
129 ATC
* * * * * * * * * *
64095946 CTTT-AAACGAAAGAAATGTTCGATGTTTGACAATTTGGGGAATAGTACCCTCTCGTGCTGGATT
1 CTTTAAAACGAAGGCAATATTCGATGTTTGGCAA-TTCGAGAATCGTGCCCTATCGTGCTGGGTT
* * * *
64096010 ACAATTTCCCGTTTG-TTCAAAATAATCGAATATCTCTTCAGAATTTCACTC
65 GCAATTTCTCATTTGCTT-AAAATAATCGAATATCCCTTCAGAATTTCACTC
64096061 GTATTTCCTA
Statistics
Matches: 394, Mismatches: 98, Indels: 29
0.76 0.19 0.06
Matches are distributed among these distances:
128 8 0.02
129 82 0.21
130 28 0.07
131 248 0.63
132 27 0.07
133 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (131 bp):
CTTTAAAACGAAGGCAATATTCGATGTTTGGCAATTCGAGAATCGTGCCCTATCGTGCTGGGTTG
CAATTTCTCATTTGCTTAAAATAATCGAATATCCCTTCAGAATTTCACTCATGTCTTCTAAAAAT
C
Found at i:64097190 original size:44 final size:45
Alignment explanation
Indices: 64097100--64097210 Score: 124
Period size: 44 Copynumber: 2.5 Consensus size: 45
64097090 CGGTCTATTC
* *
64097100 CTACTGAACTTCAGGGGGATAAGAGTTATAACTTCAACTTGTTCCA
1 CTACTG-ACTTCAGGGAGATAAGAGTTATAACTTCAACTTGCTCCA
*
64097146 CTAC-GACTTCAGGGAGATAAG-GTCTATAACTTCGA-TATGCTCCA
1 CTACTGACTTCAGGGAGATAAGAGT-TATAACTTCAACT-TGCTCCA
*
64097190 CTACTG-CTT-AGAGAGATAAGA
1 CTACTGACTTCAGGGAGATAAGA
64097211 TCTGTAATCC
Statistics
Matches: 57, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
43 13 0.23
44 38 0.67
45 2 0.04
46 4 0.07
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (45 bp):
CTACTGACTTCAGGGAGATAAGAGTTATAACTTCAACTTGCTCCA
Found at i:64097327 original size:44 final size:44
Alignment explanation
Indices: 64097278--64097861 Score: 288
Period size: 44 Copynumber: 13.3 Consensus size: 44
64097268 ATCTGCTCCA
*
64097278 CTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCCTGTTACC
* * * * * * *
64097322 CTACTGCTTAGGGGGTTAAG-GCTTATCATCTTC-GATCTATTCCC
1 CTACTGCTTAGGGAGATAAGATC-TATAATCTTCAG-CCTGTTACC
* *
64097366 CTACTGCTTAGGGTGATAAGATCTATAA-ATTCAGCCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCCTGTTACC
* * * ** * ** * * *
64097409 CTACTGTTTAGGGGGTTAAGGCCCATCGTCTT-TGATCTGCT-CC
1 CTACTGCTTAGGGAGATAAGATCTATAATCTTCAG-CCTGTTACC
* *
64097452 ACTACTGCTTAGGGAGACAAGGTCTATAATCTTCAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCCTGTTACC
* * * * * * *
64097497 CTACTGCTTAGGGGGTTAAG-GCTTATCATCTTC-GATCTATTCCC
1 CTACTGCTTAGGGAGATAAGATC-TATAATCTTCAG-CCTGTTACC
* * * * *
64097541 CTACTGCTTAGGGTGGTAAGATCTGTAA-ATTCAGCTTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCCTGTTACC
* * * ** * * *
64097584 CTACTTCTTATGGG-GTTAAG-GCTCATCGTCTT-GGATCTGCT-CC
1 CTACTGCTTA-GGGAGATAAGATCT-ATAATCTTCAG-CCTGTTACC
*
64097627 ACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCCTGTTACC
* * * * * * *
64097672 CTACTACTTAGGGGGTTAAG-GCTTATCATCTTC-GATCTGCT-CC
1 CTACTGCTTAGGGAGATAAGATC-TATAATCTTCAG-CCTGTTACC
* * *
64097715 GCTACTGCTTAGGGAGACAAGATCTATAATCTTTAGCATGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCCTGTTACC
* * * * * *
64097760 CTACTGCTCATGGG-GTTAAG-GCTTATCATCTTC-GCTCTATTCCC
1 CTACTGCTTA-GGGAGATAAGATC-TATAATCTTCAGC-CTGTTACC
* * * *
64097804 CTACTACTTAGGGTGATAAGATCTGTAAAT-TTCTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTAT-AATCTTC-AGCCTGTTACC
*
64097849 CTACTGCTCAGGG
1 CTACTGCTTAGGG
64097862 GGTTAAGACT
Statistics
Matches: 389, Mismatches: 115, Indels: 71
0.68 0.20 0.12
Matches are distributed among these distances:
42 2 0.01
43 75 0.19
44 274 0.70
45 37 0.10
46 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (44 bp):
CTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCCTGTTACC
Found at i:64097333 original size:88 final size:88
Alignment explanation
Indices: 64097175--64097874 Score: 841
Period size: 88 Copynumber: 8.0 Consensus size: 88
64097165 AGGTCTATAA
* * * * ** * * *
64097175 CTTCGATATGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATCCCCAACCTGTTTCCCTATTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
* * *
64097240 ATTAGGGGGTTAAGGCTCA-CTGT
66 CTTAGGGGGTTAAGGCTTATC-AT
*
64097263 CTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
64097328 CTTAGGGGGTTAAGGCTTATCAT
66 CTTAGGGGGTTAAGGCTTATCAT
** * * * *
64097351 CTTCGATCTATTCCCCTACTGCTTAGGGTGATAAGATCTATAA-ATTCAGCCTGTTACCCTACTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
* ** *
64097415 TTTAGGGGGTTAAGGCCCATCGT
66 CTTAGGGGGTTAAGGCTTATCAT
* *
64097438 CTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGGTCTATAATCTTCAGCCTGTTACCCTACTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
64097503 CTTAGGGGGTTAAGGCTTATCAT
66 CTTAGGGGGTTAAGGCTTATCAT
** * * ** * * * *
64097526 CTTCGATCTATTCCCCTACTGCTTAGGGTGGTAAGATCTGTAA-ATTCAGCTTGTTACCCTACTT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
* * *
64097590 CTTATGGGGTTAAGGCTCATCGT
66 CTTAGGGGGTTAAGGCTTATCAT
* *
64097613 CTTGGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTA
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
64097678 CTTAGGGGGTTAAGGCTTATCAT
66 CTTAGGGGGTTAAGGCTTATCAT
* * *
64097701 CTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTATAATCTTTAGCATGTTACCCTACTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
* *
64097766 CTCATGGGGTTAAGGCTTATCAT
66 CTTAGGGGGTTAAGGCTTATCAT
* ** * * * * * *
64097789 CTTCGCTCTATTCCCCTACTACTTAGGGTGATAAGATCTGTAAAT-TTCTAACCTGTTACCCTAC
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTAT-AATCTTC-AGCCTGTTACCCTAC
* *
64097853 TGCTCAGGGGGTTAAGACTTAT
64 TGCTTAGGGGGTTAAGGCTTAT
64097875 GAATTCACCG
Statistics
Matches: 522, Mismatches: 85, Indels: 9
0.85 0.14 0.01
Matches are distributed among these distances:
87 148 0.28
88 337 0.65
89 37 0.07
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (88 bp):
CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
CTTAGGGGGTTAAGGCTTATCAT
Found at i:64097467 original size:175 final size:175
Alignment explanation
Indices: 64097190--64097874 Score: 910
Period size: 175 Copynumber: 3.9 Consensus size: 175
64097180 ATATGCTCCA
* * * * * * *
64097190 CTACTGCTTAGAGAGATAAGATCTGT-AATCCCCAACCTGTTTCCCTATTGATTAGGGGGTTAAG
1 CTACTGCTTAGGGAGATAAGATCTATAAAT--TCAGCCTGTTACCCTACTGTTTAGGGGGTTAAG
64097254 GCTCA-CTGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGT
64 GCTCATC-GTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGT
64097318 TACCCTACTGCTTAGGGGGTTAAGGCTTATCATCTTCGATCTATTCCC
128 TACCCTACTGCTTAGGGGGTTAAGGCTTATCATCTTCGATCTATTCCC
*
64097366 CTACTGCTTAGGGTGATAAGATCTATAAATTCAGCCTGTTACCCTACTGTTTAGGGGGTTAAGGC
1 CTACTGCTTAGGGAGATAAGATCTATAAATTCAGCCTGTTACCCTACTGTTTAGGGGGTTAAGGC
* *
64097431 CCATCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGGTCTATAATCTTCAGCCTGTTAC
66 TCATCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTAC
64097496 CCTACTGCTTAGGGGGTTAAGGCTTATCATCTTCGATCTATTCCC
131 CCTACTGCTTAGGGGGTTAAGGCTTATCATCTTCGATCTATTCCC
* * * * *
64097541 CTACTGCTTAGGGTGGTAAGATCTGTAAATTCAGCTTGTTACCCTACT-TCTTATGGGGTTAAGG
1 CTACTGCTTAGGGAGATAAGATCTATAAATTCAGCCTGTTACCCTACTGT-TTAGGGGGTTAAGG
*
64097605 CTCATCGTCTTGGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTA
65 CTCATCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTA
* ** *
64097670 CCCTACTACTTAGGGGGTTAAGGCTTATCATCTTCGATCTGCTCCG
130 CCCTACTGCTTAGGGGGTTAAGGCTTATCATCTTCGATCTATTCCC
* * * * * * *
64097716 CTACTGCTTAGGGAGACAAGATCTATAATCTTTAGCATGTTACCCTACTGCTCATGGGGTTAAGG
1 CTACTGCTTAGGGAGATAAGATCTATAA-ATTCAGCCTGTTACCCTACTGTTTAGGGGGTTAAGG
* * * * ** * * * * * *
64097781 CTTATCATCTTCGCTCTATTCCCCTACTACTTAGGGTGATAAGATCTGTAAAT-TTCTAACCTGT
65 CTCATCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTAT-AATCTTC-AGCCTGT
* *
64097845 TACCCTACTGCTCAGGGGGTTAAGACTTAT
128 TACCCTACTGCTTAGGGGGTTAAGGCTTAT
64097875 GAATTCACCG
Statistics
Matches: 457, Mismatches: 45, Indels: 13
0.89 0.09 0.03
Matches are distributed among these distances:
174 1 0.00
175 322 0.70
176 95 0.21
177 39 0.09
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (175 bp):
CTACTGCTTAGGGAGATAAGATCTATAAATTCAGCCTGTTACCCTACTGTTTAGGGGGTTAAGGC
TCATCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTAC
CCTACTGCTTAGGGGGTTAAGGCTTATCATCTTCGATCTATTCCC
Found at i:64097664 original size:263 final size:262
Alignment explanation
Indices: 64097175--64097868 Score: 895
Period size: 263 Copynumber: 2.6 Consensus size: 262
64097165 AGGTCTATAA
* * * * ** * * *
64097175 CTTCGATATGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATCCCCAACCTGTTTCCCTATTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
* * * * ** * * * *
64097240 ATTAGGGGGTTAAGGCTCA-CTGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTAT
66 CTTAGGGGGTTAAGGCTTATC-ATCTTCGATCTATTCCCCTACTGCTTAGGGTGATAAGATCTGT
* * * *
64097304 AATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTATCATCTTCGATCTATTCCCCTA
130 AA-ATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCATCATCTTCGATCTACTCCACTA
* * **
64097369 CTGCTTAGGGTGATAAGATCTATAAATTCAGCCTGTTACCCTACTGTTTAGGGGGTTAAGGCCCA
194 CTGCTTAGGGAGACAAGATCTATAAATTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCCCA
*
64097434 TCGT
259 TCAT
* *
64097438 CTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGGTCTATAATCTTCAGCCTGTTACCCTACTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
*
64097503 CTTAGGGGGTTAAGGCTTATCATCTTCGATCTATTCCCCTACTGCTTAGGGTGGTAAGATCTGTA
66 CTTAGGGGGTTAAGGCTTATCATCTTCGATCTATTCCCCTACTGCTTAGGGTGATAAGATCTGTA
* * * * * *
64097568 AATTCAGCTTGTTACCCTACTTCTTATGGGGTTAAGGCTCATCGTCTTGGATCTGCTCCACTACT
131 AATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCATCATCTTCGATCTACTCCACTACT
* **
64097633 GCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTAT
196 GCTTAGGGAGACAAGATCTATAA-ATTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCCCAT
64097698 CAT
260 CAT
* * *
64097701 CTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTATAATCTTTAGCATGTTACCCTACTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
* * * *
64097766 CTCATGGGGTTAAGGCTTATCATCTTCGCTCTATTCCCCTACTACTTAGGGTGATAAGATCTGTA
66 CTTAGGGGGTTAAGGCTTATCATCTTCGATCTATTCCCCTACTGCTTAGGGTGATAAGATCTGTA
* *
64097831 AATTTCTAACCTGTTACCCTACTGCTCAGGGGGTTAAG
131 AA-TTC-AGCCTGTTACCCTACTGCTTAGGGGGTTAAG
64097869 ACTTATGAAT
Statistics
Matches: 372, Mismatches: 55, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
262 75 0.20
263 267 0.72
264 4 0.01
265 26 0.07
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (262 bp):
CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTG
CTTAGGGGGTTAAGGCTTATCATCTTCGATCTATTCCCCTACTGCTTAGGGTGATAAGATCTGTA
AATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCATCATCTTCGATCTACTCCACTACT
GCTTAGGGAGACAAGATCTATAAATTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCCCATC
AT
Found at i:64105288 original size:35 final size:34
Alignment explanation
Indices: 64105242--64105311 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 34
64105232 CACTTGCCTC
64105242 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCA-CACCA
64105277 TTCCCACTCTCCCATGCTGTCTGCCACCACACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCACACCA
64105311 T
1 T
64105312 CACACACCCC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 6 0.17
35 29 0.83
ACGTcount: A:0.17, C:0.49, G:0.10, T:0.24
Consensus pattern (34 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCACACCA
Found at i:64105735 original size:14 final size:14
Alignment explanation
Indices: 64105718--64105785 Score: 50
Period size: 15 Copynumber: 4.6 Consensus size: 14
64105708 GGGAAGCAAA
64105718 AAAAAAAATCCAGC
1 AAAAAAAATCCAGC
*
64105732 -AAAAAATTCCAGCACC
1 AAAAAAAATCCAG---C
64105748 AAAAAAAATTTCCAG-
1 AAAAAAAA--TCCAGC
*
64105763 AAAAAAATTTCCAGC
1 AAAAAAA-ATCCAGC
64105778 AAAAAAAA
1 AAAAAAAA
64105786 AACCAAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 16
0.68 0.06 0.26
Matches are distributed among these distances:
13 11 0.26
14 5 0.12
15 14 0.33
16 1 0.02
17 6 0.14
19 5 0.12
ACGTcount: A:0.62, C:0.19, G:0.06, T:0.13
Consensus pattern (14 bp):
AAAAAAAATCCAGC
Found at i:64105762 original size:32 final size:32
Alignment explanation
Indices: 64105715--64105787 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
64105705 GAGGGGAAGC
*
64105715 AAAAAAAAAAATCCAGCAAAAAA-TTCCAGCA
1 AAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
* **
64105746 CCAAAAAAAATTTCCAGAAAAAAATTTCCAGCA
1 -AAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
64105779 AAAAAAAAA
1 AAAAAAAAA
64105788 CCAAAAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 27 0.77
33 8 0.23
ACGTcount: A:0.64, C:0.18, G:0.05, T:0.12
Consensus pattern (32 bp):
AAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
Found at i:64106076 original size:11 final size:11
Alignment explanation
Indices: 64106047--64106096 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
64106037 CGACCGGATT
* *
64106047 TCCCTTCCCCC
1 TCCCTTCTCTC
64106058 TCCCTTCTCTC
1 TCCCTTCTCTC
64106069 TCCCTTCTCTC
1 TCCCTTCTCTC
64106080 TTCCC-TCTCTC
1 -TCCCTTCTCTC
*
64106091 TTCCTT
1 TCCCTT
64106097 TTTTTTCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:64106685 original size:2 final size:2
Alignment explanation
Indices: 64106613--64106669 Score: 57
Period size: 2 Copynumber: 30.0 Consensus size: 2
64106603 ATCATTTCTA
* * *
64106613 AT AT GT AT AT AT AT AT AT AT AT AT -T AT GT GT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
64106653 AT AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT
64106670 GCCATTAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
1 3 0.07
2 43 0.93
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (2 bp):
AT
Found at i:64106846 original size:2 final size:2
Alignment explanation
Indices: 64106829--64106867 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
64106819 GTGTATATTT
* *
64106829 TA TA TA CA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
64106868 TTTGCACATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:64119049 original size:70 final size:70
Alignment explanation
Indices: 64118962--64119548 Score: 978
Period size: 70 Copynumber: 8.2 Consensus size: 70
64118952 CAAGTGACAG
*
64118962 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
64119027 GTTTC
66 GTTTC
64119032 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
64119097 GTTTC
66 GTTTC
*
64119102 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
64119167 GTTTC
66 GTTTC
*
64119172 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC
64119237 AATTTATGTTTC
59 AATTTATGTTTC
*
64119249 AAAATCAACT-ATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
64119313 GTTTC
66 GTTTC
*
64119318 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
64119383 GTTTC
66 GTTTC
*
64119388 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTCAATTTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG----T-AA-TTTCA
64119453 ATTTATGTTTC
60 ATTTATGTTTC
*
64119464 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
64119529 GTTTC
66 GTTTC
64119534 AAAAATCAACTCATA
1 -AAAATCAACTCATA
64119549 GGTGAGTTGA
Statistics
Matches: 490, Mismatches: 12, Indels: 29
0.92 0.02 0.05
Matches are distributed among these distances:
69 26 0.05
70 311 0.63
71 17 0.03
72 1 0.00
74 1 0.00
75 3 0.01
76 105 0.21
77 26 0.05
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTC
Found at i:64119330 original size:216 final size:218
Alignment explanation
Indices: 64118962--64119910 Score: 1261
Period size: 216 Copynumber: 4.3 Consensus size: 218
64118952 CAAGTGACAG
* *
64118962 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
*
64119020 AATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
66 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
64119085 ATTTCAATTTATGTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTT
131 ATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTT
64119149 GAGGTAATTTCAATTTATGTTTC
196 GAGGTAATTTCAATTTATGTTTC
64119172 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
64119237 AATTTATGTTTCAAAATCAACT-ATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
66 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
64119301 ATTTCAATTTATGTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTT
131 ATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTT
64119365 GAGGTAATTTCAATTTATGTTTC
196 GAGGTAATTTCAATTTATGTTTC
64119388 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAA-TTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
64119452 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
66 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
* ** * *
64119517 ATTTCAATTTATGTTTCAAAAATCAACTC--A-T-----AGGTGAGTTGAGCCTCGGGGCACGCT
131 ATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTT
*
64119574 GAGGTATTTTCAGTCTCTACTTTCCAATTTCTGTTCATC
196 GAGG-----T-A------A-TTT-CAATTTATGTT--TC
* ** * *
64119613 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTATTTTCAA
1 ---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--AAACACGTTGAGGTAATTTCAA
* *
64119678 TTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
61 -------TTTTCAATTTATGTT--TCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAA
* *
64119743 GACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
117 GACACGTTGAGGTAATTTCAATTTATG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAA
*
64119808 GCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTC
181 GCCTCAAGACACGTTGAGGTAATTTCAATTTATG-TTTC
** * *
64119847 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTT
64119911 CTGTTTTCAA
Statistics
Matches: 661, Mismatches: 27, Indels: 89
0.85 0.03 0.11
Matches are distributed among these distances:
209 25 0.04
210 49 0.07
214 2 0.00
215 35 0.05
216 243 0.37
217 37 0.06
221 1 0.00
222 3 0.00
223 13 0.02
225 2 0.00
228 37 0.06
230 31 0.05
231 9 0.01
232 31 0.05
234 2 0.00
235 9 0.01
236 5 0.01
237 1 0.00
238 14 0.02
240 66 0.10
241 16 0.02
243 2 0.00
244 2 0.00
249 26 0.04
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (218 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
ATTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTT
GAGGTAATTTCAATTTATGTTTC
Found at i:64119353 original size:146 final size:140
Alignment explanation
Indices: 64118962--64119548 Score: 978
Period size: 146 Copynumber: 4.1 Consensus size: 140
64118952 CAAGTGACAG
*
64118962 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
64119027 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
64119092 TTTATGTTTC
131 TTTATGTTTC
*
64119102 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
*
64119167 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA
64119232 TTTTCAATTTATGTTTC
125 -TTTCAATTTATGTTTC
*
64119249 AAAATCAACT-ATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
*
64119313 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
64119378 TTTATGTTTC
131 TTTATGTTTC
*
64119388 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTCAATTTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG----T-AA-TTTCA
*
64119453 ATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAA
60 ATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAA
64119518 TTTCAATTTATGTTTC
125 TTTCAATTTATGTTTC
64119534 AAAAATCAACTCATA
1 -AAAATCAACTCATA
64119549 GGTGAGTTGA
Statistics
Matches: 421, Mismatches: 11, Indels: 23
0.93 0.02 0.05
Matches are distributed among these distances:
139 26 0.06
140 158 0.38
141 1 0.00
144 1 0.00
145 3 0.01
146 192 0.46
147 40 0.10
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (140 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
TTTATGTTTC
Found at i:64119690 original size:14 final size:14
Alignment explanation
Indices: 64119671--64119699 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
64119661 CGCTGAGGTA
64119671 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
64119685 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
64119699 T
1 T
64119700 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:64119706 original size:91 final size:86
Alignment explanation
Indices: 64119548--64119774 Score: 285
Period size: 91 Copynumber: 2.6 Consensus size: 86
64119538 ATCAACTCAT
** * * * **
64119548 AGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAGTCTCTACTTTCCAATTTCTGTTCATC
1 AGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCCAATTTCTGTTCATC
64119613 AAAAAAATCAACTCATATTGCGAG
66 ---AAAATCAACTCATATTGCGAG
* *
64119637 AGGTGAGTTGAGTCTC-AGCTCACACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTTC
1 AGGTGAGTTGAGCCTCAAG---ACACGCTGAGGTATTTTCAATTTCTGTTTTCCAATTTCTGTTC
*
64119701 GTCAAAATCAACTCATATTGCGAG
63 ATCAAAATCAACTCATATTGCGAG
* *
64119725 AGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTC
1 AGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTC
64119775 AAAAATCAAC
Statistics
Matches: 121, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
86 28 0.23
88 37 0.31
89 17 0.14
91 39 0.32
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (86 bp):
AGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCCAATTTCTGTTCATC
AAAATCAACTCATATTGCGAG
Found at i:64119803 original size:72 final size:72
Alignment explanation
Indices: 64119686--64120034 Score: 470
Period size: 72 Copynumber: 4.7 Consensus size: 72
64119676 AATTTCTGTT
*
64119686 TTTCAATTTCTGTTCGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGTT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
64119750 TGAGGTAA
65 TGAGGTAA
64119758 TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
1 TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
64119823 GAGGTAA
66 GAGGTAA
* **
64119830 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
1 TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
*
64119895 GAGGTAT
66 GAGGTAA
* * *
64119902 TTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTGGAGCCTC-GGTTCACA
1 TTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACA
* *
64119966 TGCTGAGGT-A
62 CGTTGAGGTAA
*
64119976 TTCTCAATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGC
1 TT-TCAATTTCTGT-TTTC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
64120035 TTCAGATCAC
Statistics
Matches: 249, Mismatches: 17, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
71 2 0.01
72 154 0.62
73 33 0.13
74 2 0.01
75 21 0.08
76 4 0.02
80 33 0.13
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (72 bp):
TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
GAGGTAA
Found at i:64120432 original size:44 final size:45
Alignment explanation
Indices: 64120349--64120447 Score: 103
Period size: 44 Copynumber: 2.2 Consensus size: 45
64120339 TGAAGCTGTT
* *
64120349 AATCTTATAT-TTCTGAAGTCACAGTAAAGCAGATCGAAGCTACA
1 AATCTTATATCCTCTGAAGTCACAGTAAAGCAGATCGAAGCCACA
* * ** *
64120393 AATCTTATATCCT-TGAAGTTACATTAAAGTGGATTGAAGCCACA
1 AATCTTATATCCTCTGAAGTCACAGTAAAGCAGATCGAAGCCACA
* *
64120437 AAGCATATATC
1 AATCTTATATC
64120448 AGAAGATGCA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
44 44 0.98
45 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (45 bp):
AATCTTATATCCTCTGAAGTCACAGTAAAGCAGATCGAAGCCACA
Found at i:64120805 original size:35 final size:35
Alignment explanation
Indices: 64120759--64120829 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
64120749 CACTTGCCTC
* *
64120759 TTCCCACTCTCCTATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCGATGCTGTCTGCCACCAACACCA
*
64120794 TTCCCATTCTCCGATGCTGTCTGCCACCAACACCA
1 TTCCCACTCTCCGATGCTGTCTGCCACCAACACCA
64120829 T
1 T
64120830 CACACACCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.18, C:0.44, G:0.11, T:0.27
Consensus pattern (35 bp):
TTCCCACTCTCCGATGCTGTCTGCCACCAACACCA
Found at i:64121273 original size:31 final size:31
Alignment explanation
Indices: 64121231--64121306 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 31
64121221 AAAGAGGGGA
* *
64121231 AGCAAAAAAAAAAATCCAGCAAAAAA-TTCC
1 AGCAAAAAAAAAATTCCAGAAAAAAATTTCC
*
64121261 AGCACCAAAAAAAAATTTCTAGAAAAAAATTTCC
1 AGCA--AAAAAAAAA-TTCCAGAAAAAAATTTCC
64121295 AGCAAAAAAAAA
1 AGCAAAAAAAAA
64121307 CCAAAAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
30 4 0.10
32 17 0.44
33 10 0.26
34 8 0.21
ACGTcount: A:0.63, C:0.17, G:0.07, T:0.13
Consensus pattern (31 bp):
AGCAAAAAAAAAATTCCAGAAAAAAATTTCC
Found at i:64121275 original size:33 final size:33
Alignment explanation
Indices: 64121233--64121306 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
64121223 AGAGGGGAAG
*
64121233 CAAAAAAAAAAATCCAGCAAAAAA-TTCCAGCA
1 CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
** *
64121265 CCAAAAAAAAATTTCTAGAAAAAAATTTCCAGCA
1 -CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
64121299 -AAAAAAAA
1 CAAAAAAAA
64121307 CCAAAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 8 0.22
33 20 0.56
34 8 0.22
ACGTcount: A:0.64, C:0.18, G:0.05, T:0.14
Consensus pattern (33 bp):
CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
Found at i:64121286 original size:14 final size:15
Alignment explanation
Indices: 64121269--64121304 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
64121259 CCAGCACCAA
*
64121269 AAAAAAATTTCTAG-
1 AAAAAAATTTCCAGC
64121283 AAAAAAATTTCCAGC
1 AAAAAAATTTCCAGC
64121298 AAAAAAA
1 AAAAAAA
64121305 AACCAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.64, C:0.11, G:0.06, T:0.19
Consensus pattern (15 bp):
AAAAAAATTTCCAGC
Found at i:64121589 original size:11 final size:11
Alignment explanation
Indices: 64121560--64121609 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
64121550 CGACCGAATT
* *
64121560 TCCCTTCCCCC
1 TCCCTTCTCTC
64121571 TCCCTTCTCTC
1 TCCCTTCTCTC
64121582 TCCCTTCTCTC
1 TCCCTTCTCTC
64121593 TTCCC-TCTCTC
1 -TCCCTTCTCTC
*
64121604 TTCCTT
1 TCCCTT
64121610 TTTTTTCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:64122137 original size:2 final size:2
Alignment explanation
Indices: 64122125--64122258 Score: 61
Period size: 2 Copynumber: 70.0 Consensus size: 2
64122115 ATCATTTCTA
* * *
64122125 AT AT GT AT AT AT AT AT AT AT AT -T AT GT GT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* ** * * *
64122165 AT AT -T AT GT AT AT AT GCC AT -T AGT -T AT AT AT TT CT -T AT GT
1 AT AT AT AT AT AT AT AT -AT AT AT A-T AT AT AT AT AT AT AT AT AT
* * *
64122205 AT AT AT -T CT -T AA AT ACT AT -T AT AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
*
64122245 AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT
64122259 TTTAAATTCC
Statistics
Matches: 100, Mismatches: 20, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
1 9 0.09
2 88 0.88
3 3 0.03
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.51
Consensus pattern (2 bp):
AT
Found at i:64122160 original size:22 final size:23
Alignment explanation
Indices: 64122128--64122179 Score: 88
Period size: 22 Copynumber: 2.3 Consensus size: 23
64122118 ATTTCTAATA
64122128 TGTATATATATATATATATTATG
1 TGTATATATATATATATATTATG
64122151 TGTAT-TATATATATATATTATG
1 TGTATATATATATATATATTATG
*
64122173 TATATAT
1 TGTATAT
64122180 GCCATTAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (23 bp):
TGTATATATATATATATATTATG
Found at i:64127735 original size:5 final size:5
Alignment explanation
Indices: 64127725--64127757 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
64127715 GATAAGAGCA
64127725 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
64127758 TGAATAAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:64128089 original size:6 final size:6
Alignment explanation
Indices: 64128080--64128120 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
64128070 TAATAACAAT
*
64128080 ATAGTA ATAGTA GTAGTA ATAGTA ATAAAGTA ATAGTA ATA
1 ATAGTA ATAGTA ATAGTA ATAGTA AT--AGTA ATAGTA ATA
64128121 AAAATAGTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 25 0.81
8 6 0.19
ACGTcount: A:0.51, C:0.00, G:0.17, T:0.32
Consensus pattern (6 bp):
ATAGTA
Found at i:64128093 original size:26 final size:26
Alignment explanation
Indices: 64128064--64128126 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
64128054 GATAATATGT
*
64128064 TAGTAATAATAACAATATAGTAATAG
1 TAGTAATAATAACAATAAAGTAATAG
* **
64128090 TAGTAGTAATAGTAATAAAGTAATAG
1 TAGTAATAATAACAATAAAGTAATAG
* *
64128116 TAATAAAAATA
1 TAGTAATAATA
64128127 GTACTAATGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.56, C:0.02, G:0.13, T:0.30
Consensus pattern (26 bp):
TAGTAATAATAACAATAAAGTAATAG
Found at i:64128126 original size:20 final size:20
Alignment explanation
Indices: 64128088--64128126 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
64128078 ATATAGTAAT
* **
64128088 AGTAGTAGTAATAGTAATAA
1 AGTAATAGTAATAAAAATAA
64128108 AGTAATAGTAATAAAAATA
1 AGTAATAGTAATAAAAATA
64128127 GTACTAATGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.28
Consensus pattern (20 bp):
AGTAATAGTAATAAAAATAA
Found at i:64128280 original size:3 final size:3
Alignment explanation
Indices: 64128272--64128403 Score: 212
Period size: 3 Copynumber: 44.0 Consensus size: 3
64128262 TGCTAAGATG
*
64128272 ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
64128320 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
64128368 ATA ATA GTA ATA ATG ACA ATA ATA GA-A ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
64128404 GTGTTTGAAT
Statistics
Matches: 119, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
2 1 0.01
3 117 0.98
4 1 0.01
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:64131198 original size:4 final size:4
Alignment explanation
Indices: 64131167--64131240 Score: 53
Period size: 4 Copynumber: 19.0 Consensus size: 4
64131157 TACAAATTGT
* * * * * *
64131167 TTTA TTTG TTTG TTTG TTTG TTTG TTTA TTTA TCTA TTTA TTTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * *
64131214 TTTC TTTC TTTA TTT- TTTA TTTT TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
64131241 GAAAAAATCA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
3 6 0.10
4 54 0.90
ACGTcount: A:0.14, C:0.04, G:0.07, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:64131216 original size:19 final size:19
Alignment explanation
Indices: 64131192--64131235 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
64131182 GTTTGTTTGT
64131192 TTATTTATCTATTTATTTA
1 TTATTTATCTATTTATTTA
* * * *
64131211 TTATTTCTTTCTTTATTTT
1 TTATTTATCTATTTATTTA
64131230 TTATTT
1 TTATTT
64131236 TTTTAGAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (19 bp):
TTATTTATCTATTTATTTA
Found at i:64131330 original size:18 final size:18
Alignment explanation
Indices: 64131290--64131331 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
64131280 TCTTTGTTCA
*
64131290 TTTATTATTATTTTCATT
1 TTTATTATTATTTTAATT
*
64131308 ATTATT-TTATCTTTAATT
1 TTTATTATTAT-TTTAATT
64131326 TTTATT
1 TTTATT
64131332 CTTGTTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTATTATTATTTTAATT
Found at i:64131343 original size:21 final size:21
Alignment explanation
Indices: 64131306--64131345 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
64131296 ATTATTTTCA
64131306 TTATTATTTTATCTTTAATTT
1 TTATTATTTTATCTTTAATTT
*
64131327 TTATTCTTGTTAT-TTTAAT
1 TTATTATT-TTATCTTTAAT
64131346 ATTCCTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.70
Consensus pattern (21 bp):
TTATTATTTTATCTTTAATTT
Found at i:64135126 original size:18 final size:18
Alignment explanation
Indices: 64135105--64135139 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64135095 TGAATGATAC
*
64135105 TGACAGTTACTGAATAAT
1 TGACAGATACTGAATAAT
*
64135123 TGACTGATACTGAATAA
1 TGACAGATACTGAATAA
64135140 CTAACTGTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.31
Consensus pattern (18 bp):
TGACAGATACTGAATAAT
Found at i:64135146 original size:18 final size:17
Alignment explanation
Indices: 64135112--64135155 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
64135102 TACTGACAGT
* *
64135112 TACTGAATAATTGACTG
1 TACTGAATAACTAACTG
64135129 ATACTGAATAACTAACTG
1 -TACTGAATAACTAACTG
64135147 TCACTGAAT
1 T-ACTGAAT
64135156 TGAGACTACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 1 0.04
18 22 0.96
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (17 bp):
TACTGAATAACTAACTG
Found at i:64136651 original size:21 final size:21
Alignment explanation
Indices: 64136626--64136668 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
64136616 TGTGCAAGTC
64136626 TTAAGGAAATTGTTCTTAAGG
1 TTAAGGAAATTGTTCTTAAGG
64136647 TTAAGGAAATTGTTCTTAAGG
1 TTAAGGAAATTGTTCTTAAGG
64136668 T
1 T
64136669 CAAGAAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.40
Consensus pattern (21 bp):
TTAAGGAAATTGTTCTTAAGG
Found at i:64140329 original size:145 final size:145
Alignment explanation
Indices: 64140138--64140649 Score: 707
Period size: 145 Copynumber: 3.6 Consensus size: 145
64140128 GATACGAATT
* * * * *
64140138 TTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGGTACAAATTACAAATCTTATCTCCTTGAAT
1 TTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGGTACAAGTTACAAATCTTATCTCCCTGAAG
* *
64140203 TTGCAGTGGAGTAGATTGAAACGATAAGTCCTATACCTCTGAGGTTGTAGTAGGTCAGATTAAAT
66 TTGCAGTGGAGCAGATTGAAACGATAAGTCCTATACCTCTGAAGTTGTAGTAGGTCAGATTAAAT
64140268 CTACCATAGCAAGTC
131 CTACCATAGCAAGTC
64140283 TTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGGTACAAGTTACAAATCTTATCTCCCTGAAG
1 TTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGGTACAAGTTACAAATCTTATCTCCCTGAAG
* * * * *
64140348 TTGCAGTGGAGCAGGTTGAAACAATAAGTCCTATACCTCTGAAGTTATGGTAAGTCAGATTAAAT
66 TTGCAGTGGAGCAGATTGAAACGATAAGTCCTATACCTCTGAAGTTGTAGTAGGTCAGATTAAAT
*
64140413 CTACCATA--ACGTC
131 CTACCATAGCAAGTC
* * * *
64140426 TTATCTCCCTGAAGTTGCAGTGGAATATACTAAAGTTACAAGCTACAAATCTTATCTCCCTAAAG
1 TTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGGTACAAGTTACAAATCTTATCTCCCTGAAG
* * **
64140491 TTGTAGTGGAGCAGATTGAAACGATAAGTCCTATACCTCTGAAGTTGCAGTAGGTTGGATTAAAT
66 TTGCAGTGGAGCAGATTGAAACGATAAGTCCTATACCTCTGAAGTTGTAGTAGGTCAGATTAAAT
64140556 CTACCATAGCAAGTC
131 CTACCATAGCAAGTC
* * * * * *
64140571 TTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAA-G-A-TAG---CAAATCTTATCTCCTTGAAG
1 TTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGGTACAAGTTACAAATCTTATCTCCCTGAAG
* *
64140630 TTGCAGTAGAGTAGATTGAA
66 TTGCAGTGGAGCAGATTGAA
64140650 GATACGAGTC
Statistics
Matches: 326, Mismatches: 39, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
139 35 0.11
142 2 0.01
143 130 0.40
145 159 0.49
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (145 bp):
TTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGGTACAAGTTACAAATCTTATCTCCCTGAAG
TTGCAGTGGAGCAGATTGAAACGATAAGTCCTATACCTCTGAAGTTGTAGTAGGTCAGATTAAAT
CTACCATAGCAAGTC
Found at i:64140629 original size:45 final size:45
Alignment explanation
Indices: 64140052--64140688 Score: 180
Period size: 44 Copynumber: 13.6 Consensus size: 45
64140042 CACAAATCTC
* * *
64140052 ATCTCCCTAAAGTTACAGTGGAGTAGATTGAAGATA-CAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAAGTCTT
* * * * * *
64140096 GTCTCCATAAAGTTACAGTGGAGCAGATTGAAGATA-CGAA-TTTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGC-AAGTCTT
* * * *
64140140 ATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGGTACAAATTA-CAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATT----G-A-AGA-TAGCAAGTCTT
* * *
64140191 ATCTCCTTGAATTTGCAGTGGAGTAGATTGAAACGAT---AAGTCCT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTG-AA-GATAGCAAGTCTT
* * * * **
64140235 ATAC-CTCTGAGGTTGTAGTAGGTCAGATTAAATCT-ACCATAGCAAGTCTT
1 AT-CTCCCTGAAGTTGCAGT-GG--AG--TAGAT-TGAAGATAGCAAGTCTT
* * * * *
64140285 ATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGGTACAAGTTACAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAA-G-A-TAG---CAAGTCTT
* * * ** *
64140336 ATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAA-ACAATAAGTCCT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAAGTCTT
* * ** *
64140380 ATAC-CTCTGAAGTT--A-TGGTAAGTCAGATTAAATCTACCATAACGTCTT
1 AT-CTCCCTGAAGTTGCAGTGG--AGT-AGATTGAAGATAGC--AA-GTCTT
* * * * * *
64140428 ATCTCCCTGAAGTTGCAGTGGAATATACTAAAGTTACAAGCTACAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG--A-TAG---CAAGTCTT
* * * *
64140479 ATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAACGAT---AAGTCCT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTG-AA-GATAGCAAGTCTT
* * * **
64140523 ATAC-CTCTGAAGTTGCAGTAGGTTGGATTAAATCT-ACCATAGCAAGTCTT
1 AT-CTCCCTGAAGTTGC---A-G-TGGAGTAGAT-TGAAGATAGCAAGTCTT
* *
64140573 ATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGATAGCAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAAGTCTT
* * * *
64140618 ATCTCCTTGAAGTTGCAGTAGAGTAGATTGAAGATA-CGAGTCTC
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAAGTCTT
* *
64140662 ATCGCCCTGAAGTTGCAGTGGAATAGA
1 ATCTCCCTGAAGTTGCAGTGGAGTAGA
64140689 CCAAAGCTAC
Statistics
Matches: 429, Mismatches: 104, Indels: 120
0.66 0.16 0.18
Matches are distributed among these distances:
41 3 0.01
42 1 0.00
43 2 0.00
44 144 0.34
45 65 0.15
46 3 0.01
47 17 0.04
48 28 0.07
49 18 0.04
50 45 0.10
51 97 0.23
52 4 0.01
53 1 0.00
54 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (45 bp):
ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAAGTCTT
Found at i:64141917 original size:5 final size:5
Alignment explanation
Indices: 64141907--64141931 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
64141897 ATCCCGTTTA
64141907 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
64141932 GGGTCTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:64142210 original size:4 final size:4
Alignment explanation
Indices: 64142201--64142263 Score: 56
Period size: 4 Copynumber: 16.0 Consensus size: 4
64142191 TACAAATTGT
* ** * * *
64142201 TTTA TTTA TTTA TTTG TTCG TTTA TTTA TCTA TTT- CTTA ATTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
*
64142248 TTTA TTTA TTTT TTTA
1 TTTA TTTA TTTA TTTA
64142264 GAAAAAAATC
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
3 2 0.04
4 45 0.96
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:64145124 original size:24 final size:25
Alignment explanation
Indices: 64145097--64145147 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
64145087 ATTATTTAAA
64145097 ATAA-GATATTGGTAAAAT-AAATAT
1 ATAATGATATT-GTAAAATAAAATAT
* *
64145121 ATAATTATATTTTAAAATAAAATAT
1 ATAATGATATTGTAAAATAAAATAT
64145146 AT
1 AT
64145148 GTAAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 10 0.43
25 13 0.57
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (25 bp):
ATAATGATATTGTAAAATAAAATAT
Found at i:64148327 original size:25 final size:26
Alignment explanation
Indices: 64148282--64148332 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
64148272 TATCCCTTTA
*
64148282 TTTTATAATTTTATTTCAATTAGTTT
1 TTTTATAATTTTATTTAAATTAGTTT
* *
64148308 TTTTATTATTTT-TTTAAATTCGTTT
1 TTTTATAATTTTATTTAAATTAGTTT
64148333 CACATTCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.69
Consensus pattern (26 bp):
TTTTATAATTTTATTTAAATTAGTTT
Found at i:64158928 original size:18 final size:18
Alignment explanation
Indices: 64158905--64158957 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
64158895 GATAAATCCT
64158905 AATCAAGGATTTACTCCC
1 AATCAAGGATTTACTCCC
** *
64158923 AATCAAGGATTGGCCCCC
1 AATCAAGGATTTACTCCC
*
64158941 AATCAGGGATTTACTCC
1 AATCAAGGATTTACTCC
64158958 TATATTAACA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (18 bp):
AATCAAGGATTTACTCCC
Found at i:64168735 original size:43 final size:43
Alignment explanation
Indices: 64168688--64168939 Score: 121
Period size: 43 Copynumber: 5.8 Consensus size: 43
64168678 CCTCATCTCT
*
64168688 CTGAGGTAGCAAGAGAGCAGGTTGAAGAATGAATCTTATCTTC
1 CTGAGGTAGCAAGAGAGCAGATTGAAGAATGAATCTTATCTTC
* * * *
64168731 CTGAGGTAGC-AGGGAAGCAGACTGAAGATTGAAGATCTTATCTCC
1 CTGAGGTAGCAAGAG-AGCAGATTGAAGAATG-A-ATCTTATCTTC
* * ** *
64168776 CTAAGCAGTAGC-A-A-AGCAGATCGAAGAGGCGAAACTTATC-TC
1 CTGAG--GTAGCAAGAGAGCAGATTGAAGA-ATGAATCTTATCTTC
* ** * *
64168818 CATGTATCGGTA--ATG-GAGCAGATTGAAGCCCTAAACCTTATC-TC
1 C-TG-A--GGTAGCAAGAGAGCAGATTGAAG-AATGAATCTTATCTTC
* * *
64168862 TTTGAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTC
1 -CTGAGGTAGCAAGAGAGCAGATTGAAGAATGAATCTTATCTTC
* *
64168906 TTGAGGTAGCAAG-GAAGCAGACT-AAGAATTGAAT
1 CTGAGGTAGCAAGAG-AGCAGATTGAAGAA-TGAAT
64168940 ATTTTATCTC
Statistics
Matches: 156, Mismatches: 32, Indels: 42
0.68 0.14 0.18
Matches are distributed among these distances:
41 4 0.03
42 11 0.07
43 65 0.42
44 54 0.35
45 15 0.10
46 1 0.01
47 6 0.04
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (43 bp):
CTGAGGTAGCAAGAGAGCAGATTGAAGAATGAATCTTATCTTC
Found at i:64168880 original size:175 final size:175
Alignment explanation
Indices: 64168581--64169203 Score: 709
Period size: 175 Copynumber: 3.5 Consensus size: 175
64168571 GAGTATACAT
* * * *
64168581 GATTGAAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAAATGGTGAATCTTATCTTCA
1 GATTGAAGATCTTATCTCCCT-AAGCTGCAGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCA
* *
64168646 TGTATCAGCAATGGAGCAGATTTTA--CTACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGG
65 TGTATCGGCAATGGAGCAGATTTAACCCTA--AGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGG
* * *
64168709 TTGAAGAATGAATCTTATCTTCCTGAGGTAGCAGGGAAGCAGACTGAA
128 TTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAA
* * *** * *
64168757 GATTGAAGATCTTATCTCCCTAAGCAGTAGCAAAGCAGATCGAAGA-GGCGAAACTTATCTCCAT
1 GATTGAAGATCTTATCTCCCTAAGCTGCAGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCAT
* * * * *
64168821 GTATCGGTAATGGAGCAGATTGAAGCCCTAAACCTTATCTCTTTGAGGTAGCAAGAGAGCAGGTT
66 GTATCGGCAATGGAGCAGATTTAA-CCCTAAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTT
64168886 GAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACT-AA
130 GAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAA
* * * *
64168931 GAATTGAATATTTTATCTCCC-AGAGACTGCAGTGGAGTAGATCTTCGCAGACGGTGAATCTTAT
1 G-ATTGAAGATCTTATCTCCCTA-AG-CTGCAGTGGAGCAGA---TCGAAGACGGTGAATCTTAT
* * * * *
64168995 CTCTATTTATCGGCAATAGAGCAGATTTAACCAC-CAGCCTCATCTCTCTGAGATAGCAAGAGAG
60 CTCCATGTATCGGCAATGGAGCAGATTTAACC-CTAAGCCTCATCTCTCTGAGGTAGCAAGAGAG
* * * **
64169059 CAGGTTGAAGAATGAGTCTTATCTTCTTGAGATAGTAAGGAAGCAAACTGTG
124 CAGGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAA
* * * * ** *
64169111 GATTGAGGATCTTAACTCCCTGAAGTTGCAGTGGAGCAGATCGAAAATAGTGAATCTTATCTCTA
1 GATTGAAGATCTTATCTCCCT-AAGCTGCAGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCA
*
64169176 TGCATCGGCAATGGAGCAGATTTAACCC
65 TGTATCGGCAATGGAGCAGATTTAACCC
64169204 ACCAACCTCA
Statistics
Matches: 374, Mismatches: 59, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
174 39 0.10
175 110 0.29
176 75 0.20
177 3 0.01
179 107 0.29
180 39 0.10
181 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (175 bp):
GATTGAAGATCTTATCTCCCTAAGCTGCAGTGGAGCAGATCGAAGACGGTGAATCTTATCTCCAT
GTATCGGCAATGGAGCAGATTTAACCCTAAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTG
AAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAA
Found at i:64169080 original size:179 final size:175
Alignment explanation
Indices: 64168581--64169216 Score: 696
Period size: 179 Copynumber: 3.6 Consensus size: 175
64168571 GAGTATACAT
* * *
64168581 GATTGAAGATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATCGAAAATGGTGAATCTTATCT-T
1 GATTGAAGATCTTATCTCCCAGAGA-CTGCAGTGGAGCAGATCGAAGA-GGTGAATCTTATCTCT
* * * *
64168644 CATGTATCAGCAATGGAGCAGATTTTA-CTACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAG
64 -ATGTATCGGCAATGGAGCAGATTTAACCCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGCAG
* * *
64168708 GTTGAAGAATGAATCTTATCTTCCTGAGGTAGCAGGGAAGCAGACTGAA
128 GTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACT-AA
* * *** * * *
64168757 GATTGAAGATCTTATCTCCCTA-AG-CAGTAGCAAAGCAGATCGAAGAGGCGAAACTTATCTCCA
1 GATTGAAGATCTTATCTCCC-AGAGACTGCAGTGGAGCAGATCGAAGAGGTGAATCTTATCTCTA
* * * *
64168820 TGTATCGGTAATGGAGCAGATTGAAGCCCTA--AACCTTATCTCTTTGAGGTAGCAAGAGAGCAG
65 TGTATCGGCAATGGAGCAGATTTAA-CCC-ACCAACCTCATCTCTCTGAGGTAGCAAGAGAGCAG
64168883 GTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTAA
128 GTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTAA
* * * *
64168931 GAATTGAATATTTTATCTCCCAGAGACTGCAGTGGAGTAGATCTTCGCAGACGGTGAATCTTATC
1 G-ATTGAAGATCTTATCTCCCAGAGACTGCAGTGGAGCAGA---TCGAAGA-GGTGAATCTTATC
* * * *
64168996 TCTATTTATCGGCAATAGAGCAGATTTAA-CCACCAGCCTCATCTCTCTGAGATAGCAAGAGAGC
61 TCTATGTATCGGCAATGGAGCAGATTTAACCCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGC
* * * **
64169060 AGGTTGAAGAATGAGTCTTATCTTCTTGAGATAGTAAGGAAGCAAACTGTG
126 AGGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACT-AA
* * * * * *
64169111 GATTGAGGATCTTAACTCCCTGA-AGTTGCAGTGGAGCAGATCGAAAATAGTGAATCTTATCTCT
1 GATTGAAGATCTTATCTCCCAGAGA-CTGCAGTGGAGCAGATCGAAGA-GGTGAATCTTATCTCT
*
64169175 ATGCATCGGCAATGGAGCAGATTTAACCCACCAACCTCATCT
64 ATGTATCGGCAATGGAGCAGATTTAACCCACCAACCTCATCT
64169217 TCCTAAAGGT
Statistics
Matches: 380, Mismatches: 62, Indels: 35
0.80 0.13 0.07
Matches are distributed among these distances:
174 38 0.10
175 106 0.28
176 74 0.19
177 16 0.04
178 3 0.01
179 107 0.28
180 36 0.09
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (175 bp):
GATTGAAGATCTTATCTCCCAGAGACTGCAGTGGAGCAGATCGAAGAGGTGAATCTTATCTCTAT
GTATCGGCAATGGAGCAGATTTAACCCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTT
GAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTAA
Found at i:64170662 original size:25 final size:25
Alignment explanation
Indices: 64170633--64170682 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
64170623 TATCCCTTTA
*
64170633 TTTTATAATTTTATTTCAATT-GTTT
1 TTTTATAATTTT-TTTAAATTCGTTT
*
64170658 TTTTATTATTTTTTTAAATTCGTTT
1 TTTTATAATTTTTTTAAATTCGTTT
64170683 CACATTCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.70
Consensus pattern (25 bp):
TTTTATAATTTTTTTAAATTCGTTT
Found at i:64174578 original size:21 final size:21
Alignment explanation
Indices: 64174549--64174603 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
64174539 AAAGCAAGAT
* *
64174549 TTTGAGAAGAAGAGTTCTGAG
1 TTTGGGAAGAAGAGTTCTAAG
64174570 TTTGGGAAGAAGAGTTCTAAG
1 TTTGGGAAGAAGAGTTCTAAG
64174591 TTTGGGAAGAAGA
1 TTTGGGAAGAAGA
64174604 TCGAGTAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.35, C:0.04, G:0.35, T:0.27
Consensus pattern (21 bp):
TTTGGGAAGAAGAGTTCTAAG
Found at i:64180641 original size:43 final size:45
Alignment explanation
Indices: 64180572--64180656 Score: 104
Period size: 43 Copynumber: 1.9 Consensus size: 45
64180562 CCTCATCTCT
**
64180572 CTGAGGTAGCAAGAGAGCAGGTTGAAGAATG-A-ATCTTATCTTC
1 CTGAGGTAGCAAGAGAGCAGACTGAAGAATGAAGATCTTATCTTC
* *
64180615 CTGAGGTAGC-AGGGAAGCAGACTGAAGATTGAAGATCTTATC
1 CTGAGGTAGCAAGAG-AGCAGACTGAAGAATGAAGATCTTATC
64180657 GCCCTGAGCA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 3 0.09
43 23 0.66
44 1 0.03
45 8 0.23
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (45 bp):
CTGAGGTAGCAAGAGAGCAGACTGAAGAATGAAGATCTTATCTTC
Found at i:64180770 original size:176 final size:174
Alignment explanation
Indices: 64180465--64181088 Score: 702
Period size: 176 Copynumber: 3.5 Consensus size: 174
64180455 GAGTATACAT
* *
64180465 GATTGAAGATCTTATCTCCCTGA--AGTTGCAGTGGAGCAGATCGAAAATGGTGAATCTTATCTC
1 GATTGAAGATCTTATCTCCCTGAGCAGTAGCA---GAGCAGATCGAAAATAGTGAATCTTATCTC
* * *
64180528 CATGTATCAGCAATGGAGCAGATTTTACTACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGG
63 CATGTATCGGCAATGGAGCAGATTTAAC-CCCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGG
* * *
64180593 TTGAAGAATGAATCTTATCTTCCTGAGGTAGCAGGGAAGCAGACTGAA
127 TTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAA
* * * * * *
64180641 GATTGAAGATCTTATCGCCCTGAGCAGTAGCAAAACAGATCGAAAGA-GGCGAATCTTATCTCTA
1 GATTGAAGATCTTATCTCCCTGAGCAGTAGCAGAGCAGATCGAAA-ATAGTGAATCTTATCTCCA
* * * * *
64180705 TATATCGGTAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTTTGAGGTAGCAAGAGTGCAGGT
65 TGTATCGGCAATGGAGCAGATTTAA-CCCC-AGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGT
64180770 TGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACT-AA
128 TGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAA
* * * * ** * * * * *
64180816 GAATTGAAGATTTTATCTCCCAGAGACTGCAGTGGAGTAGATCTTCGCAGACAGTGAATCTTTTC
1 G-ATTGAAGATCTTATCTCCCTGAG-CAGTAGCAGAGCAGA---TCGAAAATAGTGAATCTTATC
* *
64180881 TCCATGTATCGGCAATAGAGCAGATTTTACCACCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCA
61 TCCATGTATCGGCAATGGAGCAGATTTAACC-CCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCA
* * **
64180946 GGTTGAAGAATGAGTCTTATCTTCTTGAGATAGCAAGGAAGCAAACTGTG
125 GGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAA
* *
64180996 GATTGAGGATCTTATCTCCCTGA--AGTTGCAGTGGAGCAGATCGAAAATAGTGAATCTTATCTC
1 GATTGAAGATCTTATCTCCCTGAGCAGTAGCA---GAGCAGATCGAAAATAGTGAATCTTATCTC
* *
64181059 TATGTATCGTCAATGGAGCAGATTTAACCC
63 CATGTATCGGCAATGGAGCAGATTTAACCC
64181089 ACCAACCTCA
Statistics
Matches: 371, Mismatches: 61, Indels: 33
0.80 0.13 0.07
Matches are distributed among these distances:
175 53 0.14
176 162 0.44
177 8 0.02
178 6 0.02
179 101 0.27
180 41 0.11
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (174 bp):
GATTGAAGATCTTATCTCCCTGAGCAGTAGCAGAGCAGATCGAAAATAGTGAATCTTATCTCCAT
GTATCGGCAATGGAGCAGATTTAACCCCAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTGA
AGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAA
Found at i:64182562 original size:25 final size:27
Alignment explanation
Indices: 64182517--64182567 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
64182507 TATCCCTTTA
*
64182517 TTTTATAATTTTATTTCAATT-GTTTT
1 TTTTATAATTTTATTTAAATTCGTTTT
*
64182543 TTTTATTATTTT-TTTAAATTCGTTT
1 TTTTATAATTTTATTTAAATTCGTTT
64182568 CACATTCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.71
Consensus pattern (27 bp):
TTTTATAATTTTATTTAAATTCGTTTT
Found at i:64194806 original size:48 final size:48
Alignment explanation
Indices: 64194747--64194968 Score: 216
Period size: 48 Copynumber: 4.6 Consensus size: 48
64194737 TATGTGTGCT
*
64194747 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATACGAGAGCC
* * **
64194795 AGTGTATGACCATGTCTGGGACGTGGCATCGG-CAATATAACGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGAT-ACGAGAGCC
* ** * * * * *
64194843 AGTGTAAGACCATGTTTGAAACATGGCATC-GACATTGAGACGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATACGAGAGCC
* * * * * *
64194891 AGTGTAAGACCATGTCTTGGATATGGCATCGGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATACGAGAGCC
*
64194939 AGTGTAAGACCATGGT-TGGAACATGGCATC
1 AGTGTAAGACCAT-GTCTGGGACATGGCATC
64194969 AGCAATTCAC
Statistics
Matches: 138, Mismatches: 31, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
47 5 0.04
48 128 0.93
49 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATACGAGAGCC
Found at i:64200936 original size:22 final size:21
Alignment explanation
Indices: 64200887--64200936 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
64200877 TTGACTGAAG
64200887 TAAAATTTAGTATCATATAAA
1 TAAAATTTAGTATCATATAAA
64200908 TAGAAATTTAAGTATCAATATAAA
1 TA-AAATTT-AGTATC-ATATAAA
64200932 -AAAAT
1 TAAAAT
64200937 ATATATAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 2 0.08
22 10 0.38
23 7 0.27
24 7 0.27
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (21 bp):
TAAAATTTAGTATCATATAAA
Found at i:64201532 original size:14 final size:14
Alignment explanation
Indices: 64201513--64201539 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64201503 TTGTTTGCAT
64201513 GTAAAATATTTTCG
1 GTAAAATATTTTCG
64201527 GTAAAATATTTTC
1 GTAAAATATTTTC
64201540 ATTGTTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.44
Consensus pattern (14 bp):
GTAAAATATTTTCG
Found at i:64202944 original size:12 final size:12
Alignment explanation
Indices: 64202927--64202984 Score: 61
Period size: 12 Copynumber: 5.1 Consensus size: 12
64202917 TCAGTTTAGT
64202927 TTTAATATTTAA
1 TTTAATATTTAA
64202939 TTTAATATTTAA
1 TTTAATATTTAA
64202951 TTT--T-TTTAA
1 TTTAATATTTAA
*
64202960 TTTGATATTTAA
1 TTTAATATTTAA
*
64202972 GTTTGAT-TTTAA
1 -TTTAATATTTAA
64202984 T
1 T
64202985 GTTTATTTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
9 8 0.19
10 1 0.02
11 2 0.05
12 25 0.60
13 6 0.14
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (12 bp):
TTTAATATTTAA
Found at i:64205805 original size:17 final size:16
Alignment explanation
Indices: 64205768--64205801 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
64205758 GAGAATAATC
64205768 AATTTTTATATAAATT
1 AATTTTTATATAAATT
* *
64205784 AATTTTTTTGTAAATT
1 AATTTTTATATAAATT
64205800 AA
1 AA
64205802 ATTTATTTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
AATTTTTATATAAATT
Found at i:64207269 original size:23 final size:23
Alignment explanation
Indices: 64207221--64207269 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
64207211 TCCATTTCTT
*
64207221 TTATATATATTATAAAATTTTTA
1 TTATATATATTATAAAATTTTCA
* *
64207244 TTATAT-TATATATACACTTTTCA
1 TTATATATAT-TATAAAATTTTCA
64207267 TTA
1 TTA
64207270 GTCGGAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 3 0.14
23 19 0.86
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (23 bp):
TTATATATATTATAAAATTTTCA
Found at i:64208535 original size:11 final size:11
Alignment explanation
Indices: 64208519--64208548 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
64208509 AAAGAACACA
64208519 AAAGCAGAAAC
1 AAAGCAGAAAC
64208530 AAAGCAGAAAC
1 AAAGCAGAAAC
64208541 AAAGCAGA
1 AAAGCAGA
64208549 GAAATGGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.63, C:0.17, G:0.20, T:0.00
Consensus pattern (11 bp):
AAAGCAGAAAC
Found at i:64209616 original size:18 final size:16
Alignment explanation
Indices: 64209578--64209622 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 16
64209568 TAAGTCTTCG
64209578 TTTATTTAATTATTTAA
1 TTTATTT-ATTATTTAA
64209595 -TTATTTATTATTATACA
1 TTTATTTATTATT-TA-A
64209612 TTTATTTATTA
1 TTTATTTATTA
64209623 CTTTTTCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 6 0.24
16 8 0.32
17 1 0.04
18 10 0.40
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTATTTATTATTTAA
Found at i:64216203 original size:20 final size:20
Alignment explanation
Indices: 64216178--64216217 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
64216168 ATGATACTCT
*
64216178 GCATTCATGTAAATATCAGA
1 GCATTCATATAAATATCAGA
64216198 GCATTCATATAAATATCAGA
1 GCATTCATATAAATATCAGA
64216218 CATATACATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (20 bp):
GCATTCATATAAATATCAGA
Found at i:64217194 original size:131 final size:131
Alignment explanation
Indices: 64216710--64217191 Score: 712
Period size: 131 Copynumber: 3.7 Consensus size: 131
64216700 CTGAGAATTG
* *
64216710 ACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCGTGTCTCCCTGAAGT
1 ACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTGTCTCCCTGAAGT
** * *
64216775 TGCAGTGGAACAGATTAAAGATGGCGAATATTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGT
66 TGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGT
64216840 C
131 C
* * * *
64216841 ACCATCCTATCTCCCTAAGCAGTAATGAAGTAGACTGAAGATTACAGATCTTGTCTCCCTAAAGT
1 ACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTGTCTCCCTGAAGT
* *
64216906 TGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAATAGTGGAGCAGATTTAAGC
66 TGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGT
64216971 C
131 C
* * * *
64216972 ACCATCTTATCTCTCTAACCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTATCTCCCTGAAGT
1 ACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTGTCTCCCTGAAGT
* * * * *
64217037 TACAGTGGAACAGATCGAAGACGGTGAATCTTATCTTCCTAACCAGTAGTGAAGCAGATTTAAGT
66 TGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGT
64217102 C
131 C
* * * *
64217103 ACCATCTTATCTCCCTAAGTAGTAGTGGAGTAGGCTGAAGATTGCAGATCTCGTCTCCCTGAAGT
1 ACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTGTCTCCCTGAAGT
* * *
64217168 TGCAGTGGAAAAAATCGAATACGG
66 TGCAGTGGAACAGATCGAAGACGG
64217192 TGAGCCTTAA
Statistics
Matches: 314, Mismatches: 37, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
131 314 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (131 bp):
ACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTGTCTCCCTGAAGT
TGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGT
C
Found at i:64217290 original size:88 final size:88
Alignment explanation
Indices: 64217181--64217364 Score: 269
Period size: 88 Copynumber: 2.1 Consensus size: 88
64217171 AGTGGAAAAA
* * * * *
64217181 ATCGAATACGGTGAGCCTTAACCCCCTAAGCAATAGGGTAATAGGCTGAAAATTACATATCTTAT
1 ATCGAAGACGATGAGCCTTAACCCCCTAAGCAATAGGGTAACAGGCTAAAAATTACAGATCTTAT
*
64217246 CTCCCTAAGCAGTAGTGGAGCAG
66 CTCCCTAAGAAGTAGTGGAGCAG
* * **
64217269 ATCGAAGACGATGAGCCTTAACCCTCTAAGCAGTAGGGTAACAGGCTAAAAATTGTAGATCTTAT
1 ATCGAAGACGATGAGCCTTAACCCCCTAAGCAATAGGGTAACAGGCTAAAAATTACAGATCTTAT
64217334 CTCCCTAAGAAGTAGTGGAGCAG
66 CTCCCTAAGAAGTAGTGGAGCAG
*
64217357 ATCAAAGA
1 ATCGAAGA
64217365 TAACAAATCT
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 85 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (88 bp):
ATCGAAGACGATGAGCCTTAACCCCCTAAGCAATAGGGTAACAGGCTAAAAATTACAGATCTTAT
CTCCCTAAGAAGTAGTGGAGCAG
Found at i:64217386 original size:88 final size:87
Alignment explanation
Indices: 64217196--64217392 Score: 223
Period size: 88 Copynumber: 2.2 Consensus size: 87
64217186 ATACGGTGAG
* * * *
64217196 CCTTAACCCCCTAAGCAATAGGGTAATAGGCTGAAAATTACATATCTTATCTCCCTAAGCAGTAG
1 CCTTAA-CCCCTAAGCAATAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGAAGTAG
* * ** *
64217261 TGGAGCAGATCGAAGACGATGAG
65 TGGAGCAGATCAAAGACAACAAA
* **
64217284 CCTTAACCCTCTAAGCAGTAGGGTAACAGGCTAAAAATTGTAGATCTTATCTCCCTAAGAAGTAG
1 CCTTAACCC-CTAAGCAATAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGAAGTAG
*
64217349 TGGAGCAGATCAAAGATAACAAA
65 TGGAGCAGATCAAAGACAACAAA
* **
64217372 TCTTGTCTCCCTAAGCAATAG
1 CCTTAAC-CCCTAAGCAATAG
64217393 TGGAGCAGAT
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
87 3 0.03
88 85 0.94
89 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (87 bp):
CCTTAACCCCTAAGCAATAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGAAGTAGT
GGAGCAGATCAAAGACAACAAA
Found at i:64217596 original size:44 final size:44
Alignment explanation
Indices: 64217469--64218069 Score: 209
Period size: 44 Copynumber: 13.5 Consensus size: 44
64217459 CGTATTTCCT
* * * * * *
64217469 TGAAGTTCCAATGGAGTAGATCGAGGCTACAAATCTCT-TCTCCC
1 TGAAGTTGCAGTGGAGCAGATCGAAGCTACTAACCT-TATCTCCC
* * * * * * **
64217513 TGAAATCGCATTGGAGCAGAAT-AAAGATACCAATTTTATCTCCC
1 TGAAGTTGCAGTGGAGCAG-ATCGAAGCTACTAACCTTATCTCCC
*
64217557 TGAAGTTGCAGTGGAGCAGATCGAAGCCACTAACCTTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATCGAAGCTACTAACCTTATCTCCC
* * * * ** *
64217601 TGAAGTCGCAGTAGAACATG-TTGAATTTAC-AAGTCTTATCTCCC
1 TGAAGTTGCAGTGGAGCA-GATCGAAGCTACTAA-CCTTATCTCCC
* ** * * * *
64217645 TGAAGTTGTAGTGGAGCAGA-CTGAAAATAGCGAATCATATCTCTC
1 TGAAGTTGCAGTGGAGCAGATC-GAAGCTA-CTAACCTTATCTCCC
* * * * * * * *
64217690 TAAAGTTACAGTAGAGTAGAGT-AAAGCTA-TAAATCATATTTCCC
1 TGAAGTTGCAGTGGAGCAGA-TCGAAGCTACT-AACCTTATCTCCC
* * * *
64217734 TGAAGTTGCAGTGGAGCGGATCGAAGATAGCAAACCTTATCTCTC
1 TGAAGTTGCAGTGGAGCAGATCGAAGCTA-CTAACCTTATCTCCC
* * ** **
64217779 TAAAATTGCAGTAAAGCAGAGTTAAAGCTA-TAAACCTTAT-TCCCC
1 TGAAGTTGCAGTGGAGCAGA-TCGAAGCTACT-AACCTTATCT-CCC
* * * * ** *
64217824 TGAAGTTGCAGTGGGGCAGGTTGAAGTTACATGTCC-TATCTCCT
1 TGAAGTTGCAGTGGAGCAGATCGAAGCTAC-TAACCTTATCTCCC
* * * ** *
64217868 TGAAGTTGCAGTAGAGCGGATCGAAGATGGTGAATCTTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATCGAAGCTACT-AACCTTATCTCCC
* * * * * *
64217913 TGAAGTTGTAGTGGAGTAGATTGAAGCCACAAACCTTATCTCTC
1 TGAAGTTGCAGTGGAGCAGATCGAAGCTACTAACCTTATCTCCC
* * * ** * *
64217957 TGAAGTTGTATTGGGGCA-AGTTAAAGTTAC-AAGTCTTATCTCCC
1 TGAAGTTGCAGTGGAGCAGA-TCGAAGCTACTAA-CCTTATCTCCC
* * * ** * ** *
64218001 TGAAGTTGTAGTAGAGCAGATTGAAGAAAGTAGATTTTATCTCCT
1 TGAAGTTGCAGTGGAGCAGATCGAAGCTACTA-ACCTTATCTCCC
* *
64218046 TGAAGTTGCAATAGAGCAGATCGA
1 TGAAGTTGCAGTGGAGCAGATCGA
64218070 GTTATAATTT
Statistics
Matches: 405, Mismatches: 124, Indels: 55
0.69 0.21 0.09
Matches are distributed among these distances:
43 11 0.03
44 241 0.60
45 143 0.35
46 10 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (44 bp):
TGAAGTTGCAGTGGAGCAGATCGAAGCTACTAACCTTATCTCCC
Found at i:64217740 original size:89 final size:90
Alignment explanation
Indices: 64217641--64217842 Score: 255
Period size: 89 Copynumber: 2.3 Consensus size: 90
64217631 AAGTCTTATC
* * * * *
64217641 TCCCTGAAGTTGTAGTGGAGCAGA-CTGAAAATAGCGAATCATATCTCTCTAAAGTTACAGTAGA
1 TCCCTGAAGTTGCAGTGGAGCAGATC-GAAAATAGCAAACCATATCTCTCTAAAATTACAGTAAA
* *
64217705 GTAGAG-TAAAGCTATAAATCATATT
65 GCAGAGTTAAAGCTATAAACCATATT
* * * *
64217730 TCCCTGAAGTTGCAGTGGAGCGGATCGAAGATAGCAAACCTTATCTCTCTAAAATTGCAGTAAAG
1 TCCCTGAAGTTGCAGTGGAGCAGATCGAAAATAGCAAACCATATCTCTCTAAAATTACAGTAAAG
*
64217795 CAGAGTTAAAGCTATAAACCTTATT
66 CAGAGTTAAAGCTATAAACCATATT
* *
64217820 CCCCTGAAGTTGCAGTGGGGCAG
1 TCCCTGAAGTTGCAGTGGAGCAG
64217843 GTTGAAGTTA
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
89 58 0.60
90 38 0.40
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (90 bp):
TCCCTGAAGTTGCAGTGGAGCAGATCGAAAATAGCAAACCATATCTCTCTAAAATTACAGTAAAG
CAGAGTTAAAGCTATAAACCATATT
Found at i:64217833 original size:45 final size:45
Alignment explanation
Indices: 64217692--64217835 Score: 114
Period size: 45 Copynumber: 3.2 Consensus size: 45
64217682 TATCTCTCTA
* * * * *
64217692 AAGTTACAGTAGAGTAGAG-TAAAGCTATAAATCATATTTCCCTG
1 AAGTTGCAGTAGAGCAGAGTTAAAGCTATAAACCTTATTCCCCTG
* * ** * * * *
64217736 AAGTTGCAGTGGAGCGGA-TCGAAGATAGCAAACCTTA-TCTCTCTA
1 AAGTTGCAGTAGAGCAGAGTTAAAGCTA-TAAACCTTATTC-CCCTG
* *
64217781 AAATTGCAGTAAAGCAGAGTTAAAGCTATAAACCTTATTCCCCTG
1 AAGTTGCAGTAGAGCAGAGTTAAAGCTATAAACCTTATTCCCCTG
64217826 AAGTTGCAGT
1 AAGTTGCAGT
64217836 GGGGCAGGTT
Statistics
Matches: 71, Mismatches: 24, Indels: 9
0.68 0.23 0.09
Matches are distributed among these distances:
44 20 0.28
45 43 0.61
46 8 0.11
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (45 bp):
AAGTTGCAGTAGAGCAGAGTTAAAGCTATAAACCTTATTCCCCTG
Found at i:64217997 original size:133 final size:133
Alignment explanation
Indices: 64217730--64218065 Score: 352
Period size: 133 Copynumber: 2.5 Consensus size: 133
64217720 AAATCATATT
* * * * * *
64217730 TCCCTGAAGTTGCAGTGGAGCGGATCGAAGATAGCAAACCTTATCTCTCTAAAATTGCAGTAAAG
1 TCCCTGAAGTTGCAGTAGAGCGGATCGAAGATAG-TAATCTTATCTCCCTGAAGTTGCAGTAAAG
* * * * *
64217795 CAGAGTTAAAGCTATAAACCTTATTCCCCTGAAGTTGCAGTGGGGCAGGTTGAAGTTACATGTCC
65 CAGAGTTAAAGCCACAAACCTTATTCCCCTGAAGTTGCAGTGGGGCAAGTTAAAGTTACAAGTCC
64217860 TATC
130 TATC
* * * **
64217864 TCCTTGAAGTTGCAGTAGAGCGGATCGAAGATGGTGAATCTTATCTCCCTGAAGTTGTAGTGGAG
1 TCCCTGAAGTTGCAGTAGAGCGGATCGAAGATAGT-AATCTTATCTCCCTGAAGTTGCAGTAAAG
* * * * *
64217929 TAGA-TTGAAGCCACAAACCTTA-TCTCTCTGAAGTTGTATTGGGGCAAGTTAAAGTTACAAGTC
65 CAGAGTTAAAGCCACAAACCTTATTC-CCCTGAAGTTGCAGTGGGGCAAGTTAAAGTTACAAGTC
*
64217992 TTATC
129 CTATC
* * * * * * * *
64217997 TCCCTGAAGTTGTAGTAGAGCAGATTGAAGAAAGTAGATTTTATCTCCTTGAAGTTGCAATAGAG
1 TCCCTGAAGTTGCAGTAGAGCGGATCGAAGATAGTA-ATCTTATCTCCCTGAAGTTGCAGTAAAG
64218062 CAGA
65 CAGA
64218066 TCGAGTTATA
Statistics
Matches: 165, Mismatches: 34, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
132 3 0.02
133 106 0.64
134 56 0.34
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (133 bp):
TCCCTGAAGTTGCAGTAGAGCGGATCGAAGATAGTAATCTTATCTCCCTGAAGTTGCAGTAAAGC
AGAGTTAAAGCCACAAACCTTATTCCCCTGAAGTTGCAGTGGGGCAAGTTAAAGTTACAAGTCCT
ATC
Found at i:64220184 original size:14 final size:15
Alignment explanation
Indices: 64220165--64220193 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
64220155 ACATCATGTA
64220165 TATTTATTT-TTATT
1 TATTTATTTATTATT
64220179 TATTTATTTATTATT
1 TATTTATTTATTATT
64220194 CTATACACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TATTTATTTATTATT
Found at i:64221678 original size:53 final size:53
Alignment explanation
Indices: 64221581--64221732 Score: 259
Period size: 53 Copynumber: 2.8 Consensus size: 53
64221571 AGCATCAAAT
* *
64221581 GATTTCCTTGCATTCAACAAACTTATAAAGATTGTAGCTCAAATTTATAAATAA
1 GATTTCTTTGCATTCAACAAACTT-TAGAGATTGTAGCTCAAATTTATAAATAA
* *
64221635 GGTTTCTTTGCATTCAACAAACTTCAGAGATTGTAGCTCAAATTTATAAATAA
1 GATTTCTTTGCATTCAACAAACTTTAGAGATTGTAGCTCAAATTTATAAATAA
64221688 GATTTCTTTGCATTCAACAAACTTTAGAGATTGTAGCTCAAATTT
1 GATTTCTTTGCATTCAACAAACTTTAGAGATTGTAGCTCAAATTT
64221733 CTAACATTCC
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 70 0.76
54 22 0.24
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (53 bp):
GATTTCTTTGCATTCAACAAACTTTAGAGATTGTAGCTCAAATTTATAAATAA
Found at i:64223567 original size:14 final size:14
Alignment explanation
Indices: 64223548--64223575 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
64223538 ATCCAAGAAT
64223548 GCATTAATACATAA
1 GCATTAATACATAA
64223562 GCATTAATACATAA
1 GCATTAATACATAA
64223576 ACATCAATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
GCATTAATACATAA
Found at i:64225028 original size:43 final size:42
Alignment explanation
Indices: 64224904--64225059 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 42
64224894 ATGCCATATC
* * * * *
64224904 CCAGATATGGTCTTACATGTTATCACAT-ATGGATGCCGATAGC
1 CCAGACATGGTCTTACACGTAATCACATAAT-GATGCCAAT-GT
* * *
64224947 CCAG-CTATGGTCTTACACGAAATCAAATAACGATGCCAATGT
1 CCAGAC-ATGGTCTTACACGTAATCACATAATGATGCCAATGT
64224989 CCTAGACATGGTCTTACACGTAATCACATAATGATGCCAATGT
1 CC-AGACATGGTCTTACACGTAATCACATAATGATGCCAATGT
* * * *
64225032 CCAGACATGCTCTAACACATAAACACAT
1 CCAGACATGGTCTTACACGTAATCACAT
64225060 CTCGTTAATC
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
42 25 0.27
43 67 0.71
44 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (42 bp):
CCAGACATGGTCTTACACGTAATCACATAATGATGCCAATGT
Found at i:64225059 original size:42 final size:43
Alignment explanation
Indices: 64224973--64225059 Score: 122
Period size: 42 Copynumber: 2.0 Consensus size: 43
64224963 ACGAAATCAA
* * * *
64224973 ATAACGATGCCAATGTCCTAGACATGGTCTTACACGTAATCAC
1 ATAACGATGCCAATGTCCTAGACATGCTCTAACACATAAACAC
*
64225016 ATAATGATGCCAATGTCC-AGACATGCTCTAACACATAAACAC
1 ATAACGATGCCAATGTCCTAGACATGCTCTAACACATAAACAC
64225058 AT
1 AT
64225060 CTCGTTAATC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 22 0.56
43 17 0.44
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (43 bp):
ATAACGATGCCAATGTCCTAGACATGCTCTAACACATAAACAC
Found at i:64229920 original size:10 final size:10
Alignment explanation
Indices: 64229907--64229931 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
64229897 CTAAGGGTGG
64229907 AAAATGGCTT
1 AAAATGGCTT
64229917 AAAATGGCTT
1 AAAATGGCTT
64229927 AAAAT
1 AAAAT
64229932 AGCCTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.28
Consensus pattern (10 bp):
AAAATGGCTT
Found at i:64232176 original size:41 final size:41
Alignment explanation
Indices: 64232114--64232193 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
64232104 GATTATGTGA
* *
64232114 TCCGGGTGCTGGTGTTGTATGTCTTACCAATGGTTGAGTAT
1 TCCGAGTGCTGGTGTTGTATGTCTTACCAATAGTTGAGTAT
64232155 TCCGAGTGCTGGTGTTGTATGTCTTACCAATAGTTGAGT
1 TCCGAGTGCTGGTGTTGTATGTCTTACCAATAGTTGAGT
64232194 GAATAGGCCC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.16, C:0.15, G:0.30, T:0.39
Consensus pattern (41 bp):
TCCGAGTGCTGGTGTTGTATGTCTTACCAATAGTTGAGTAT
Found at i:64238571 original size:11 final size:11
Alignment explanation
Indices: 64238555--64238585 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
64238545 AGTGGGAATA
64238555 ATTATTTTATG
1 ATTATTTTATG
64238566 ATTATTTTATG
1 ATTATTTTATG
64238577 ATTATTTTA
1 ATTATTTTA
64238586 ATGTTTATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (11 bp):
ATTATTTTATG
Found at i:64242273 original size:20 final size:20
Alignment explanation
Indices: 64242224--64242274 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
64242214 TAACCAACTA
64242224 TTTTAAGAAAAACCATTAAT
1 TTTTAAGAAAAACCATTAAT
* * *
64242244 ATTTACGAAAAACC-TTAGT
1 TTTTAAGAAAAACCATTAAT
64242263 TTTTAGAGAAAA
1 TTTTA-AGAAAA
64242275 CTCGTGTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (20 bp):
TTTTAAGAAAAACCATTAAT
Found at i:64247455 original size:22 final size:22
Alignment explanation
Indices: 64247409--64247456 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
64247399 TTCAAAGGGA
*
64247409 AAAAATGTAAATAATAAAATTG
1 AAAAATGTAAATAATAAAATAG
64247431 AAAAATGCTAAA-AATAATAA-AG
1 AAAAATG-TAAATAATAA-AATAG
64247453 AAAA
1 AAAA
64247457 CTTAAAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 17 0.74
23 6 0.26
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.21
Consensus pattern (22 bp):
AAAAATGTAAATAATAAAATAG
Found at i:64250876 original size:54 final size:54
Alignment explanation
Indices: 64250766--64250877 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 54
64250756 AGGAAGCGTC
* * * *
64250766 CTGGTGGCTATGCTACAATTATTTGATCTGGTGGCTCTGCCACATATTTCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * * * *
64250820 CTGGTGGCTCTGCCACGATTATCTGTATTTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
64250874 CTGG
1 CTGG
64250878 CAGTCATGTT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
54 31 0.65
55 17 0.35
ACGTcount: A:0.16, C:0.21, G:0.22, T:0.40
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:64258694 original size:27 final size:26
Alignment explanation
Indices: 64258593--64258699 Score: 110
Period size: 27 Copynumber: 3.9 Consensus size: 26
64258583 AGGAAGCGTC
*
64258593 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTG-CAC-ATTATCTGTAT
*
64258620 CTGGTGGCTCTGCTACATATTTCTGT-T
1 CTGGTGGCTCTGC-ACAT-TATCTGTAT
64258647 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTG-CAC-ATTATCTGTAT
*
64258675 CTGGTGACTCTGTCACATTATCTGT
1 CTGGTGGCTCTG-CACATTATCTGT
64258700 TTTGGCAGCC
Statistics
Matches: 69, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
26 3 0.04
27 48 0.70
28 18 0.26
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCACATTATCTGTAT
Found at i:64258699 original size:54 final size:54
Alignment explanation
Indices: 64258593--64258700 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 54
64258583 AGGAAGCGTC
* *
64258593 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCTACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCTACATATATCTGTT
* *
64258647 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTG-TCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCT-ACATATATCTGTT
64258701 TTGGCAGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
54 31 0.65
55 17 0.35
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCTACATATATCTGTT
Found at i:64264905 original size:55 final size:53
Alignment explanation
Indices: 64264780--64264968 Score: 209
Period size: 55 Copynumber: 3.5 Consensus size: 53
64264770 AACTTACCAT
* * * *
64264780 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCATAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * *
64264833 TACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
** * * * *
64264888 TGCCATGTATTGACATGGTCTTACATGATTTCCTTGCATTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
64264942 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
64264969 ATATCCTTAT
Statistics
Matches: 113, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.02
53 33 0.29
54 34 0.30
55 42 0.37
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:64273615 original size:27 final size:27
Alignment explanation
Indices: 64273577--64273670 Score: 73
Period size: 27 Copynumber: 3.4 Consensus size: 27
64273567 ACCTTCAATT
64273577 TTTCTCGATCTAAATACGAGTTCTTTC
1 TTTCTCGATCTAAATACGAGTTCTTTC
* * ** *****
64273604 TTTCTTGATCTATATGTATTAAAAAATT-
1 TTTCTCGATCTA-A-ATACGAGTTCTTTC
64273632 TTTCTCGATCTAAATACGAGTTCTTTC
1 TTTCTCGATCTAAATACGAGTTCTTTC
*
64273659 TTTCTTGATCTA
1 TTTCTCGATCTA
64273671 TATGTATTCA
Statistics
Matches: 45, Mismatches: 19, Indels: 6
0.64 0.27 0.09
Matches are distributed among these distances:
26 5 0.11
27 23 0.51
28 12 0.27
29 5 0.11
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.48
Consensus pattern (27 bp):
TTTCTCGATCTAAATACGAGTTCTTTC
Found at i:64273657 original size:55 final size:55
Alignment explanation
Indices: 64273573--64273683 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
64273563 GATAACCTTC
64273573 AATTTTTCTCGATCTAAATACGAGTTCTTTCTTTCTTGATCTATATGTATTAAAA
1 AATTTTTCTCGATCTAAATACGAGTTCTTTCTTTCTTGATCTATATGTATTAAAA
*
64273628 AATTTTTCTCGATCTAAATACGAGTTCTTTCTTTCTTGATCTATATGTATTCAAA
1 AATTTTTCTCGATCTAAATACGAGTTCTTTCTTTCTTGATCTATATGTATTAAAA
64273683 A
1 A
64273684 TTTACTCGTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.47
Consensus pattern (55 bp):
AATTTTTCTCGATCTAAATACGAGTTCTTTCTTTCTTGATCTATATGTATTAAAA
Found at i:64278977 original size:40 final size:40
Alignment explanation
Indices: 64278933--64279196 Score: 344
Period size: 40 Copynumber: 6.7 Consensus size: 40
64278923 GCTACTCGTT
* *
64278933 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
64278973 CAAATGCCTTCGGAACTTAACCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
64279013 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
64279052 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
64279091 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATTAGTAACTCGCA
* * * *
64279131 CAAATGCCTTC-GGATCTTAGTCTGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
64279172 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64279197 CATCATTCGA
Statistics
Matches: 203, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
38 2 0.01
39 75 0.37
40 114 0.56
41 12 0.06
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:64279116 original size:118 final size:122
Alignment explanation
Indices: 64278933--64279196 Score: 371
Period size: 118 Copynumber: 2.2 Consensus size: 122
64278923 GCTACTCGTT
* *
64278933 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCG
*
64278997 GAATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGTAAC-TCGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCGGATA-TAGTAACTTAGCA
* **
64279052 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCG
* * * * *
64279115 GATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCTGGATATAGTCACTTAGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCGGATATAGTAACTTAGCA
64279172 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64279197 CATCATTCGA
Statistics
Matches: 129, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
118 70 0.54
119 39 0.30
120 20 0.16
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (122 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCG
GAATTAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCGGATATAGTAACTTAGCA
Found at i:64287182 original size:39 final size:39
Alignment explanation
Indices: 64287100--64287353 Score: 289
Period size: 40 Copynumber: 6.7 Consensus size: 39
64287090 GCTACTCGTT
* *
64287100 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
64287140 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
64287179 CAAATGCCTT-GGG-CTTAGCCC-GATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* *
64287215 CAAATGCCTTCGGG-CTTAGCCCGGA--A-TTA-TCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
*
64287249 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-TTAGTAACTCGCA
* * *
64287289 CAAATGCCTTC-GGATCTTAG-TCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
64287329 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64287354 CATCATTCGA
Statistics
Matches: 188, Mismatches: 13, Indels: 26
0.83 0.06 0.11
Matches are distributed among these distances:
33 2 0.01
34 15 0.08
35 12 0.06
36 26 0.14
37 18 0.10
38 7 0.04
39 45 0.24
40 63 0.34
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:64287295 original size:74 final size:76
Alignment explanation
Indices: 64287093--64287301 Score: 252
Period size: 74 Copynumber: 2.8 Consensus size: 76
64287083 GGATATAGCT
* *
64287093 ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACT
1 ACTCGTACAAATGCCTTC-GGACTTAG-CCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACT
64287157 TAACCCGGATTAGTA
63 TAACCCGGA-TAGTA
* * * *
64287172 ACTCGCACAAATGCCTT-GGGCTTAGCCCGA-TTAGTAACTCGCACAAATGCCTTCGGG-CTTAG
1 ACTCGTACAAATGCCTTCGGACTTAGCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
*
64287234 CCCGGA-A-TT
66 CCCGGATAGTA
64287243 A-TCGTACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 ACTCGTACAAATGCCTTCGGA-CTTAG-CCGGATTTAGTAACTCGCACAAATGCCTTCGG
64287302 ATCTTAGTCG
Statistics
Matches: 115, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
70 14 0.12
71 4 0.03
72 6 0.05
73 4 0.03
74 36 0.31
75 26 0.23
76 4 0.03
77 6 0.05
79 15 0.13
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (76 bp):
ACTCGTACAAATGCCTTCGGACTTAGCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
CCCGGATAGTA
Found at i:64289718 original size:18 final size:17
Alignment explanation
Indices: 64289692--64289725 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
64289682 CATAGTGGAG
64289692 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
64289710 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
64289726 AGTCCAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:64300375 original size:13 final size:13
Alignment explanation
Indices: 64300357--64300383 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
64300347 GAAGTAATCG
64300357 CACATGGGCGTGT
1 CACATGGGCGTGT
64300370 CACATGGGCGTGT
1 CACATGGGCGTGT
64300383 C
1 C
64300384 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (13 bp):
CACATGGGCGTGT
Found at i:64302607 original size:61 final size:61
Alignment explanation
Indices: 64302494--64302615 Score: 183
Period size: 61 Copynumber: 2.0 Consensus size: 61
64302484 AAATCGACAC
* * * *
64302494 AGCCTGGACTTCCTTACACGGGTAGACCACACACCCGTGTAGTTTTACTAGACTCTAACAT
1 AGCCTAGACTTCCTTACACGGGTAGACCACACACCCGTGTACTTTCAATAGACTCTAACAT
*
64302555 AGCCTAGACTTCCTTACACGGGTAGACCACACGCCCGTGT-CTATTCAATAGACTCTAACAT
1 AGCCTAGACTTCCTTACACGGGTAGACCACACACCCGTGTACT-TTCAATAGACTCTAACAT
64302616 GGTTTGAAGC
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
60 1 0.02
61 54 0.98
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.25
Consensus pattern (61 bp):
AGCCTAGACTTCCTTACACGGGTAGACCACACACCCGTGTACTTTCAATAGACTCTAACAT
Found at i:64320870 original size:14 final size:13
Alignment explanation
Indices: 64320850--64320881 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
64320840 AATATTTGAC
64320850 TTGTTCTTAATTA
1 TTGTTCTTAATTA
64320863 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
64320877 TTGTT
1 TTGTT
64320882 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:64326601 original size:19 final size:20
Alignment explanation
Indices: 64326569--64326606 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
64326559 TGTTTAAAAT
*
64326569 TTTTTTATTATTATGTTATA
1 TTTTTAATTATTATGTTATA
*
64326589 TTTTTAATT-TTATTTTAT
1 TTTTTAATTATTATGTTAT
64326607 TTGAAGACTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTTTAATTATTATGTTATA
Done.