Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr09 85040211 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 85040211 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Warning! 160 characters in sequence are not A, C, G, or T File 219 of 292 Found at i:64329723 original size:27 final size:26 Alignment explanation
Indices: 64329670--64329760 Score: 128 Period size: 27 Copynumber: 3.4 Consensus size: 26 64329660 ATTACCAAAG * * 64329670 TACCCTCGATTTATAAATTACTATTT 1 TACCCTCGATTTACAAATTACTGTTT * 64329696 TACCCTTGATTTACAGAATTACTGTTT 1 TACCCTCGATTTACA-AATTACTGTTT * 64329723 TACCCTCGATTTACAAAATTACCGTTT 1 TACCCTCGATTTAC-AAATTACTGTTT 64329750 TACCCTCGATT 1 TACCCTCGATT 64329761 GTGAAATTAC Statistics Matches: 58, Mismatches: 5, Indels: 3 0.88 0.08 0.05 Matches are distributed among these distances: 26 13 0.22 27 44 0.76 28 1 0.02 ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42 Consensus pattern (26 bp): TACCCTCGATTTACAAATTACTGTTT Found at i:64329780 original size:53 final size:52 Alignment explanation
Indices: 64329645--64329780 Score: 132 Period size: 53 Copynumber: 2.6 Consensus size: 52 64329635 TACAGAAATG * * * 64329645 CCCTCGACTTGTAAAATTAC-CAAAGTACCCTCGATTTATAAATTACTATTTTA 1 CCCTCGA-TTGTAAAATTACTGAAA-TACCCTCGATTTAAAAATTACCATTTTA * *** * 64329698 CCCTTGATT-TACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTA 1 CCCTCGATTGTA-A-AATTACTGAAATACCCTCGATTTA-AAAATTACCATTTTA * 64329752 CCCTCGATTGTGAAATTACTGAAATACCC 1 CCCTCGATTGTAAAATTACTGAAATACCC 64329781 ATATAGGGTA Statistics Matches: 65, Mismatches: 13, Indels: 10 0.74 0.15 0.11 Matches are distributed among these distances: 51 2 0.03 52 3 0.05 53 38 0.58 54 21 0.32 55 1 0.02 ACGTcount: A:0.31, C:0.24, G:0.10, T:0.36 Consensus pattern (52 bp): CCCTCGATTGTAAAATTACTGAAATACCCTCGATTTAAAAATTACCATTTTA Found at i:64329822 original size:27 final size:27 Alignment explanation
Indices: 64329792--64329890 Score: 119 Period size: 27 Copynumber: 3.7 Consensus size: 27 64329782 TATAGGGTAG 64329792 AATTACCAAAATACCCCTAGTTTGTAA 1 AATTACCAAAATACCCCTAGTTTGTAA * * * 64329819 AATTACCAAAATACCACTGGTTTGTGA 1 AATTACCAAAATACCCCTAGTTTGTAA ** * 64329846 AATTACCGGAATA-CCCTCAATTTGTAA 1 AATTACCAAAATACCCCT-AGTTTGTAA * 64329873 AATTACCAAAATGCCCCT 1 AATTACCAAAATACCCCT 64329891 GATTTACAAA Statistics Matches: 58, Mismatches: 12, Indels: 3 0.79 0.16 0.04 Matches are distributed among these distances: 26 3 0.05 27 51 0.88 28 4 0.07 ACGTcount: A:0.38, C:0.23, G:0.10, T:0.28 Consensus pattern (27 bp): AATTACCAAAATACCCCTAGTTTGTAA Found at i:64329966 original size:27 final size:27 Alignment explanation
Indices: 64329893--64329978 Score: 95 Period size: 27 Copynumber: 3.1 Consensus size: 27 64329883 ATGCCCCTGA * 64329893 TTTACAAAATT-TTAGAAATACCCTTGAC 1 TTTACAAAATTATT-GAAATACCCTTG-G * * 64329921 TTT-CTAAAAATTATAGAAATACCATTGG 1 TTTAC--AAAATTATTGAAATACCCTTGG 64329949 TTTACAAAATTATTGAAATACCCTTGG 1 TTTACAAAATTATTGAAATACCCTTGG 64329976 TTT 1 TTT 64329979 GTAGATTTAC Statistics Matches: 49, Mismatches: 5, Indels: 9 0.78 0.08 0.14 Matches are distributed among these distances: 27 24 0.49 28 6 0.12 29 18 0.37 30 1 0.02 ACGTcount: A:0.38, C:0.14, G:0.09, T:0.38 Consensus pattern (27 bp): TTTACAAAATTATTGAAATACCCTTGG Found at i:64330946 original size:25 final size:25 Alignment explanation
Indices: 64330907--64331025 Score: 186 Period size: 25 Copynumber: 4.8 Consensus size: 25 64330897 GGAAGTGCTA * * * 64330907 AAAGGGCTCTACCCCAGTTTA-CCG 1 AAAGGGCTTTGCCCCAGTTTATCAG 64330931 AAAAGGGCTTTGCCCCAGTTTATCAG 1 -AAAGGGCTTTGCCCCAGTTTATCAG 64330957 AAAGGGCTTTGCCCCAGTTTATCAG 1 AAAGGGCTTTGCCCCAGTTTATCAG 64330982 AAAGGGCTTTGCCCCAGTTTATCAG 1 AAAGGGCTTTGCCCCAGTTTATCAG * 64331007 AAAGGGTTTTGCCCCAGTT 1 AAAGGGCTTTGCCCCAGTT 64331026 ATTAAAAGAG Statistics Matches: 89, Mismatches: 4, Indels: 2 0.94 0.04 0.02 Matches are distributed among these distances: 25 87 0.98 26 2 0.02 ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27 Consensus pattern (25 bp): AAAGGGCTTTGCCCCAGTTTATCAG Found at i:64331049 original size:50 final size:50 Alignment explanation
Indices: 64330907--64331050 Score: 141 Period size: 50 Copynumber: 2.9 Consensus size: 50 64330897 GGAAGTGCTA * * * * ** 64330907 AAAGGGCTCTACCCCAGTTTA-CCGAAAAGGGCTTTGCCCCAGTTTATCAG 1 AAAGGGCTTTGCCCCAGTTTATCAG-AAAGGACTAGGCCCCAGTTTATCAG * ** 64330957 AAAGGGCTTTGCCCCAGTTTATCAGAAAGGGCTTTGCCCCAGTTTATCAG 1 AAAGGGCTTTGCCCCAGTTTATCAGAAAGGACTAGGCCCCAGTTTATCAG * * 64331007 AAAGGGTTTTGCCCCAG-TTATTA-AAAGAGACTAGGCCTCCAGTT 1 AAAGGGCTTTGCCCCAGTTTATCAGAAAG-GACTAGGCC-CCAGTT 64331051 ATATGATAAA Statistics Matches: 83, Mismatches: 8, Indels: 6 0.86 0.08 0.06 Matches are distributed among these distances: 48 4 0.05 49 11 0.13 50 66 0.80 51 2 0.02 ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26 Consensus pattern (50 bp): AAAGGGCTTTGCCCCAGTTTATCAGAAAGGACTAGGCCCCAGTTTATCAG Found at i:64331049 original size:75 final size:75 Alignment explanation
Indices: 64330907--64331050 Score: 168 Period size: 75 Copynumber: 1.9 Consensus size: 75 64330897 GGAAGTGCTA * * ** 64330907 AAAGGGCTCTACCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCAGAAAGGGCTTTGCCCC 1 AAAGGGCTCTACCCCAGTTTACAGAAAAGGGCTTTGCCCCAGTTTATCAGAAAGGACTAGGCCCC 64330972 AGTTTATCAG 66 AGTTTATCAG * * * * 64330982 AAAGGGCTTTGCCCCAGTTTATCAG-AAAGGGTTTTGCCCCAG-TTATTA-AAAGAGACTAGGCC 1 AAAGGGCTCTACCCCAGTTTA-CAGAAAAGGGCTTTGCCCCAGTTTATCAGAAAG-GACTAGGCC 64331044 TCCAGTT 64 -CCAGTT 64331051 ATATGATAAA Statistics Matches: 58, Mismatches: 8, Indels: 6 0.81 0.11 0.08 Matches are distributed among these distances: 73 4 0.07 74 11 0.19 75 41 0.71 76 2 0.03 ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26 Consensus pattern (75 bp): AAAGGGCTCTACCCCAGTTTACAGAAAAGGGCTTTGCCCCAGTTTATCAGAAAGGACTAGGCCCC AGTTTATCAG Found at i:64331232 original size:42 final size:42 Alignment explanation
Indices: 64331173--64331266 Score: 179 Period size: 42 Copynumber: 2.2 Consensus size: 42 64331163 TAGTCTCCCC * 64331173 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG 1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG 64331215 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG 1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG 64331257 AAATGGGCTT 1 AAATGGGCTT 64331267 AAGGGCTATA Statistics Matches: 51, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 42 51 1.00 ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34 Consensus pattern (42 bp): AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG Found at i:64331323 original size:31 final size:31 Alignment explanation
Indices: 64331288--64331371 Score: 143 Period size: 31 Copynumber: 2.7 Consensus size: 31 64331278 CGTTTATAGT 64331288 AAAGGCTTCGGCCCAGTGATATGATTTATGA 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA * * 64331319 AAAGGCTTCGGCCCTGTGATATGATTTATGG 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA 64331350 AAAGGCTTCGGCCCAGT-ATATG 1 AAAGGCTTCGGCCCAGTGATATG 64331372 TCAAGACTAA Statistics Matches: 50, Mismatches: 3, Indels: 1 0.93 0.06 0.02 Matches are distributed among these distances: 30 5 0.10 31 45 0.90 ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTGATATGATTTATGA Found at i:64337847 original size:16 final size:16 Alignment explanation
Indices: 64337810--64337848 Score: 51 Period size: 16 Copynumber: 2.4 Consensus size: 16 64337800 TGTCGAGAAA * 64337810 CCATTAATATCGCAGG 1 CCATTAATATCGCAAG * 64337826 CCATTAATATTGCAAG 1 CCATTAATATCGCAAG * 64337842 CTATTAA 1 CCATTAA 64337849 AATTTTAGGG Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 16 20 1.00 ACGTcount: A:0.36, C:0.21, G:0.13, T:0.31 Consensus pattern (16 bp): CCATTAATATCGCAAG Found at i:64338761 original size:12 final size:12 Alignment explanation
Indices: 64338744--64338769 Score: 52 Period size: 12 Copynumber: 2.2 Consensus size: 12 64338734 AAAACAGATC 64338744 TTTAGCGGCGTT 1 TTTAGCGGCGTT 64338756 TTTAGCGGCGTT 1 TTTAGCGGCGTT 64338768 TT 1 TT 64338770 CTCAAAAAAC Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 14 1.00 ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46 Consensus pattern (12 bp): TTTAGCGGCGTT Found at i:64338898 original size:41 final size:41 Alignment explanation
Indices: 64338793--64339208 Score: 588 Period size: 41 Copynumber: 10.1 Consensus size: 41 64338783 AAAAAAATTG * * * 64338793 TAAAACAT-AGAGCAATAGCAGCGTTTTTGGTAAAACGCCGC 1 TAAAA-ATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC * * * 64338834 TAAAAA-CAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGC 1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC * 64338874 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCAC 1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC 64338915 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC 1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC * * 64338956 TAAAAATAAGATCATTAGCGGTGCTTTTGGTAAAACGCCGC 1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC * * 64338997 TAAAAAT-CGAAGCATTAGCGGCACTTTTGGTAAAACGCCGC 1 TAAAAATAAG-AGCATTAGCGGCGCTTTTGGTAAAACGCCGC * * * 64339038 TAAAAA-ATCGAAGCAATAGCGGCGCTTTTGGTAAAACGCAGC 1 TAAAAATA-AG-AGCATTAGCGGCGCTTTTGGTAAAACGCCGC * 64339080 TAAAAATAAGATCATTAGCGGCGCTTTTGGTAAAACGCCGC 1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC * * * * 64339121 TAAAAATCAGGGCAATAGCGGCGGTTTTGGTAAAACGCCGC 1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC * 64339162 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCTGC 1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC 64339203 TAAAAA 1 TAAAAA 64339209 GTTTAGGGTT Statistics Matches: 340, Mismatches: 29, Indels: 12 0.89 0.08 0.03 Matches are distributed among these distances: 40 40 0.12 41 261 0.77 42 38 0.11 43 1 0.00 ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22 Consensus pattern (41 bp): TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC Found at i:64339087 original size:165 final size:165 Alignment explanation
Indices: 64338793--64339208 Score: 610 Period size: 165 Copynumber: 2.5 Consensus size: 165 64338783 AAAAAAATTG * * * * 64338793 TAAAACAT-AGAGCAATAGCAGCGTTTTTGGTAAAACGCCGCTAAAAA-CAGAGCAATAGCAGCG 1 TAAAA-ATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCAGAGCATTAGCGGCG * 64338856 CTTTTGGTAAAACGCCGCT-AAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCACTAAAA 65 CTTTTGGTAAAACGCCGCTAAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCACTAAAA 64338920 ATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC 130 ATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC * * * * 64338956 TAAAAATAAGATCATTAGCGGTGCTTTTGGTAAAACGCCGCTAAAAATC-GAAGCATTAGCGGCA 1 TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCAG-AGCATTAGCGGCG * 64339020 CTTTTGGTAAAACGCCGCTAAAAAAT-CGAAGCAATAGCGGCGCTTTTGGTAAAACG-CAGCTAA 65 CTTTTGGTAAAACGCCGCTAAAAAATAAG-AGCAATAGCGGCGCTTTTGGTAAAACGCCA-CTAA * 64339083 AAATAAGATCATTAGCGGCGCTTTTGGTAAAACGCCGC 128 AAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC * * * * 64339121 TAAAAATCAGGGCAATAGCGGCGGTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGC 1 TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCAGAGCATTAGCGGCGC * 64339186 TTTTGGTAAAACGCTGCTAAAAA 66 TTTTGGTAAAACGCCGCTAAAAA 64339209 GTTTAGGGTT Statistics Matches: 226, Mismatches: 20, Indels: 12 0.88 0.08 0.05 Matches are distributed among these distances: 162 2 0.01 163 40 0.18 164 33 0.15 165 150 0.66 166 1 0.00 ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22 Consensus pattern (165 bp): TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCAGAGCATTAGCGGCGC TTTTGGTAAAACGCCGCTAAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCACTAAAAA TAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC Found at i:64339306 original size:21 final size:22 Alignment explanation
Indices: 64339282--64339325 Score: 72 Period size: 21 Copynumber: 2.0 Consensus size: 22 64339272 GGTTTATGTA * 64339282 TTATGGTTTAAGGGTT-GGGGT 1 TTATGATTTAAGGGTTAGGGGT 64339303 TTATGATTTAAGGGTTAGGGGT 1 TTATGATTTAAGGGTTAGGGGT 64339325 T 1 T 64339326 AGGGTTAGGG Statistics Matches: 21, Mismatches: 1, Indels: 1 0.91 0.04 0.04 Matches are distributed among these distances: 21 15 0.71 22 6 0.29 ACGTcount: A:0.18, C:0.00, G:0.39, T:0.43 Consensus pattern (22 bp): TTATGATTTAAGGGTTAGGGGT Found at i:64339324 original size:7 final size:7 Alignment explanation
Indices: 64339314--64339353 Score: 73 Period size: 7 Copynumber: 5.9 Consensus size: 7 64339304 TATGATTTAA 64339314 GGGTTAG 1 GGGTTAG 64339321 GGGTTA- 1 GGGTTAG 64339327 GGGTTAG 1 GGGTTAG 64339334 GGGTTAG 1 GGGTTAG 64339341 GGGTTAG 1 GGGTTAG 64339348 GGGTTA 1 GGGTTA 64339354 ATACTTAGGG Statistics Matches: 32, Mismatches: 0, Indels: 2 0.94 0.00 0.06 Matches are distributed among these distances: 6 6 0.19 7 26 0.81 ACGTcount: A:0.15, C:0.00, G:0.55, T:0.30 Consensus pattern (7 bp): GGGTTAG Found at i:64339331 original size:13 final size:13 Alignment explanation
Indices: 64339313--64339353 Score: 73 Period size: 13 Copynumber: 3.1 Consensus size: 13 64339303 TTATGATTTA 64339313 AGGGTTAGGGGTT 1 AGGGTTAGGGGTT 64339326 AGGGTTAGGGGTT 1 AGGGTTAGGGGTT 64339339 AGGGGTTAGGGGTT 1 A-GGGTTAGGGGTT 64339353 A 1 A 64339354 ATACTTAGGG Statistics Matches: 27, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 13 14 0.52 14 13 0.48 ACGTcount: A:0.17, C:0.00, G:0.54, T:0.29 Consensus pattern (13 bp): AGGGTTAGGGGTT Found at i:64339601 original size:21 final size:21 Alignment explanation
Indices: 64339575--64339618 Score: 70 Period size: 21 Copynumber: 2.1 Consensus size: 21 64339565 TTATGGTTAG * * 64339575 GGGATATAGTTTAGGGTTTAA 1 GGGATATACTTTAGGGATTAA 64339596 GGGATATACTTTAGGGATTAA 1 GGGATATACTTTAGGGATTAA 64339617 GG 1 GG 64339619 TTATAGGGAT Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 21 21 1.00 ACGTcount: A:0.30, C:0.02, G:0.34, T:0.34 Consensus pattern (21 bp): GGGATATACTTTAGGGATTAA Found at i:64343183 original size:183 final size:183 Alignment explanation
Indices: 64342875--64343243 Score: 693 Period size: 183 Copynumber: 2.0 Consensus size: 183 64342865 GATATAGTTC * * 64342875 CATGTGTCTATATTAGTGAATTAATGTTGTATATGTTTCAGTTACTGCTTCCTGCTCCTCCTGCA 1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGATTCCTGCTCCTCCTGCA 64342940 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA 66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA 64343005 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA 131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA * * 64343058 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA 1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGATTCCTGCTCCTCCTGCA 64343123 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA 66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA * 64343188 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA 131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA 64343241 CAT 1 CAT 64343244 CTGTTTTAGG Statistics Matches: 181, Mismatches: 5, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 183 181 1.00 ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42 Consensus pattern (183 bp): CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGATTCCTGCTCCTCCTGCA ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA Found at i:64343464 original size:15 final size:15 Alignment explanation
Indices: 64343444--64343472 Score: 58 Period size: 15 Copynumber: 1.9 Consensus size: 15 64343434 GGAGTAGACC 64343444 AGGTACGTTTTATTG 1 AGGTACGTTTTATTG 64343459 AGGTACGTTTTATT 1 AGGTACGTTTTATT 64343473 TCAAAATTCT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 14 1.00 ACGTcount: A:0.21, C:0.07, G:0.24, T:0.48 Consensus pattern (15 bp): AGGTACGTTTTATTG Found at i:64344225 original size:275 final size:274 Alignment explanation
Indices: 64343734--64344286 Score: 1061 Period size: 275 Copynumber: 2.0 Consensus size: 274 64343724 CCAACCTTAT 64343734 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT 1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT * 64343799 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA 66 GCAAGATATAATGAATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA 64343864 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA 131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA * 64343929 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATGA 196 AAAATTAAACTACGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA 64343994 TGTTTGATTTTAATA 260 TGTTTGATTTTAATA 64344009 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT 1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT * 64344074 GCAAGATATAATGAATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTTAA 66 GCAAGATATAATGAATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA * 64344139 AAAGACTTGAAAATAGTTCTATTGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA 131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA 64344204 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT 196 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT 64344269 GTTTGATTTTAATA 261 GTTTGATTTTAATA 64344283 TTTA 1 TTTA 64344287 CGATTCTTTT Statistics Matches: 274, Mismatches: 4, Indels: 1 0.98 0.01 0.00 Matches are distributed among these distances: 274 64 0.23 275 210 0.77 ACGTcount: A:0.36, C:0.13, G:0.12, T:0.40 Consensus pattern (274 bp): TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT GCAAGATATAATGAATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT GTTTGATTTTAATA Found at i:64344302 original size:72 final size:70 Alignment explanation
Indices: 64344214--64344376 Score: 274 Period size: 71 Copynumber: 2.3 Consensus size: 70 64344204 AAAATTAAAC 64344214 TACGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTT 1 TACGATTCTTTTTTTATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTGATTT 64344278 TAATATT 65 TAATA-T 64344285 TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTGATTTT 1 TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTGATTTT ** 64344350 TTTAT 66 AATAT 64344355 TACGATTCTTTTTTTTATATTA 1 TACGATTC-TTTTTTTATATTA 64344377 ATATGTACTT Statistics Matches: 88, Mismatches: 2, Indels: 4 0.94 0.02 0.04 Matches are distributed among these distances: 70 9 0.10 71 50 0.57 72 29 0.33 ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61 Consensus pattern (70 bp): TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTGATTTT AATAT Found at i:64344522 original size:15 final size:15 Alignment explanation
Indices: 64344504--64344533 Score: 60 Period size: 15 Copynumber: 2.0 Consensus size: 15 64344494 ATAATTTTTA 64344504 TAAATATTATTTAAT 1 TAAATATTATTTAAT 64344519 TAAATATTATTTAAT 1 TAAATATTATTTAAT 64344534 CCCGCTACTT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 15 1.00 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (15 bp): TAAATATTATTTAAT Found at i:64344678 original size:9 final size:9 Alignment explanation
Indices: 64344638--64344931 Score: 114 Period size: 9 Copynumber: 31.6 Consensus size: 9 64344628 TATTTGATAT * 64344638 CATAATTTA 1 CATAACTTA * 64344647 TATAACTTA 1 CATAACTTA * * 64344656 CAAAACATA 1 CATAACTTA 64344665 CATAACTTA 1 CATAACTTA * 64344674 TATAACTTA 1 CATAACTTA * * 64344683 GATAA-ATA 1 CATAACTTA * 64344691 TATAACTTA 1 CATAACTTA 64344700 CATAACTTA 1 CATAACTTA 64344709 CATAATACTTA 1 CAT-A-ACTTA * * 64344720 AATATATTTTATA 1 CATA-A--CT-TA * 64344733 TCATAATTTA 1 -CATAACTTA 64344743 CATAACTTA 1 CATAACTTA 64344752 CATAACTTA 1 CATAACTTA * 64344761 TATAACTTA 1 CATAACTTA * * 64344770 GATAA-ATA 1 CATAACTTA * * 64344778 TATAATTTA 1 CATAACTTA * 64344787 CATAA-ATA 1 CATAACTTA * * * 64344795 TATATCATA 1 CATAACTTA 64344804 TCATAACTTA 1 -CATAACTTA 64344814 CATAACTTA 1 CATAACTTA 64344823 CATAATACTTA 1 CAT-A-ACTTA * * 64344834 AATATATTTTATA 1 CATA-A--CT-TA * 64344847 TCATAATTTA 1 -CATAACTTA 64344857 CATAACTTA 1 CATAACTTA 64344866 CATAACTT- 1 CATAACTTA * 64344874 TATAACTTA 1 CATAACTTA * * 64344883 GATAA-ATA 1 CATAACTTA * * 64344891 TATAATTTA 1 CATAACTTA * 64344900 CATAA-ATA 1 CATAACTTA * * * 64344908 TATATCATA 1 CATAACTTA 64344917 TCATAACTTA 1 -CATAACTTA 64344927 CATAA 1 CATAA 64344932 TACTTAAATT Statistics Matches: 220, Mismatches: 45, Indels: 40 0.72 0.15 0.13 Matches are distributed among these distances: 8 35 0.16 9 129 0.59 10 24 0.11 11 18 0.08 12 2 0.01 13 6 0.03 14 6 0.03 ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39 Consensus pattern (9 bp): CATAACTTA Found at i:64344694 original size:17 final size:17 Alignment explanation
Indices: 64344672--64344911 Score: 108 Period size: 17 Copynumber: 13.4 Consensus size: 17 64344662 ATACATAACT * 64344672 TATATAACTTAGATAAA 1 TATATAACTTACATAAA * 64344689 TATATAACTTACATAACT 1 TATATAACTTACATAA-A * * 64344707 TACATAA--TACTTAAA 1 TATATAACTTACATAAA ** * 64344722 TATAT-TTTATATCATAATT 1 TATATAACT-TA-CATAA-A * * 64344741 TACATAACTTACATAACT 1 TATATAACTTACATAA-A * 64344759 TATATAACTTAGATAAA 1 TATATAACTTACATAAA * 64344776 TATATAATTTACATAAA 1 TATATAACTTACATAAA * * * 64344793 TATATATCATATCATAACT 1 TATATAACTTA-CATAA-A * 64344812 TACATAACTTACATAATA 1 TATATAACTTACATAA-A ** * 64344830 CTTAAATATATTTTATATCATAATT 1 --T--ATATA-ACT-TA-CATAA-A * * 64344855 TACATAACTTACATAAC 1 TATATAACTTACATAAA * * 64344872 TTTATAACTTAGATAAA 1 TATATAACTTACATAAA * 64344889 TATATAATTTACATAAA 1 TATATAACTTACATAAA 64344906 TATATA 1 TATATA 64344912 TCATATCATA Statistics Matches: 165, Mismatches: 42, Indels: 32 0.69 0.18 0.13 Matches are distributed among these distances: 15 4 0.02 16 6 0.04 17 73 0.44 18 45 0.27 19 16 0.10 20 3 0.02 21 4 0.02 22 4 0.02 23 2 0.01 24 2 0.01 25 6 0.04 ACGTcount: A:0.47, C:0.11, G:0.01, T:0.40 Consensus pattern (17 bp): TATATAACTTACATAAA Found at i:64344809 original size:96 final size:96 Alignment explanation
Indices: 64344611--64344818 Score: 231 Period size: 96 Copynumber: 2.1 Consensus size: 96 64344601 ATAAAAAACT * * 64344611 TACATAATACATAAATATATTTGATATCATAATTTATATAACTTACAAAACATACATAACTTATA 1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACATACATAACTTAGA * * * * 64344676 TAACTTAGATAAATATATAACTTACATAACT 66 TAACATAGATAAATACATAACATACATAACA * * * * * 64344707 TACATAATACTTAAATATATTTTATATCATAATTTACATAACTTACATAACTTATATAACTTAGA 1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACATACATAACTTAGA * * * * 64344772 TAA-ATATATAATTTACATAA-ATATATATCA 66 TAACATAGATAA-ATACATAACATACATAACA 64344802 TATCATAACTTACATAA 1 TA-CATAA--TACATAA 64344819 CTTACATAAT Statistics Matches: 92, Mismatches: 16, Indels: 6 0.81 0.14 0.05 Matches are distributed among these distances: 95 14 0.15 96 72 0.78 98 6 0.07 ACGTcount: A:0.48, C:0.12, G:0.01, T:0.38 Consensus pattern (96 bp): TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACATACATAACTTAGA TAACATAGATAAATACATAACATACATAACA Found at i:64344820 original size:114 final size:113 Alignment explanation
Indices: 64344688--64344931 Score: 472 Period size: 114 Copynumber: 2.2 Consensus size: 113 64344678 ACTTAGATAA 64344688 ATAT-ATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTA 1 ATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTA 64344752 CATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATC 66 CATAACTT-TATAACTTAGATAAATATATAATTTACATAAATATATATC 64344801 ATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTA 1 ATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTA 64344866 CATAACTTTATAACTTAGATAAATATATAATTTACATAAATATATATC 66 CATAACTTTATAACTTAGATAAATATATAATTTACATAAATATATATC 64344914 ATATCATAACTTACATAA 1 ATATCATAACTTACATAA 64344932 TACTTAAATT Statistics Matches: 130, Mismatches: 0, Indels: 2 0.98 0.00 0.02 Matches are distributed among these distances: 113 62 0.48 114 68 0.52 ACGTcount: A:0.47, C:0.12, G:0.01, T:0.40 Consensus pattern (113 bp): ATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTA CATAACTTTATAACTTAGATAAATATATAATTTACATAAATATATATC Found at i:64344839 original size:43 final size:43 Alignment explanation
Indices: 64344789--64344870 Score: 137 Period size: 43 Copynumber: 1.9 Consensus size: 43 64344779 ATAATTTACA 64344789 TAAATATATATCATATCATAACTTACATAACTTACATAATACT 1 TAAATATATATCATATCATAACTTACATAACTTACATAATACT * * * 64344832 TAAATATATTTTATATCATAATTTACATAACTTACATAA 1 TAAATATATATCATATCATAACTTACATAACTTACATAA 64344871 CTTTATAACT Statistics Matches: 36, Mismatches: 3, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 43 36 1.00 ACGTcount: A:0.46, C:0.13, G:0.00, T:0.40 Consensus pattern (43 bp): TAAATATATATCATATCATAACTTACATAACTTACATAATACT Found at i:64350561 original size:15 final size:16 Alignment explanation
Indices: 64350536--64350566 Score: 55 Period size: 15 Copynumber: 2.0 Consensus size: 16 64350526 GCAACAACTT 64350536 AGAGCGGAGGCAGCAG 1 AGAGCGGAGGCAGCAG 64350552 AGAG-GGAGGCAGCAG 1 AGAGCGGAGGCAGCAG 64350567 CTGCAGCGAG Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 15 11 0.73 16 4 0.27 ACGTcount: A:0.32, C:0.16, G:0.52, T:0.00 Consensus pattern (16 bp): AGAGCGGAGGCAGCAG Found at i:64350890 original size:30 final size:31 Alignment explanation
Indices: 64350845--64350910 Score: 80 Period size: 30 Copynumber: 2.2 Consensus size: 31 64350835 TGGTTGTATT * 64350845 TTTTATGTTAAATTTGCTGT-TTTGGCTGCA 1 TTTTATATTAAATTTGCTGTATTTGGCTGCA * * * * 64350875 TTTTATATTATATTTGTTGTATTTGGTTGGA 1 TTTTATATTAAATTTGCTGTATTTGGCTGCA 64350906 TTTTA 1 TTTTA 64350911 ATGCAGGAAG Statistics Matches: 30, Mismatches: 5, Indels: 1 0.83 0.14 0.03 Matches are distributed among these distances: 30 17 0.57 31 13 0.43 ACGTcount: A:0.18, C:0.05, G:0.18, T:0.59 Consensus pattern (31 bp): TTTTATATTAAATTTGCTGTATTTGGCTGCA Found at i:64351010 original size:43 final size:43 Alignment explanation
Indices: 64350989--64351119 Score: 217 Period size: 43 Copynumber: 3.0 Consensus size: 43 64350979 AAAAAGCGCT * 64350989 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCCCAAACGCC 1 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC 64351032 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC 1 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC * * 64351075 GCTAAAAGCCTTGACCTTTAGCGGCGTTTTTTCCCAATAAACGCC 1 GCTAAAAGCCTTGACCTTTAGCGGCG-CTTTTCCC-ACAAACGCC 64351120 ACAAATTTTT Statistics Matches: 83, Mismatches: 3, Indels: 2 0.94 0.03 0.02 Matches are distributed among these distances: 43 68 0.82 44 7 0.08 45 8 0.10 ACGTcount: A:0.23, C:0.34, G:0.18, T:0.25 Consensus pattern (43 bp): GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC Found at i:64356075 original size:258 final size:258 Alignment explanation
Indices: 64355612--64356100 Score: 888 Period size: 258 Copynumber: 1.9 Consensus size: 258 64355602 ATCATTTACA * * 64355612 AGCCAACTCAAATGGCTAAATCTATTACTAACATATACGAAAATGACCATAACTCCTACACATGC 1 AGCCAACTCAAATGGCTAAATCCATTACTAACATATACCAAAATGACCATAACTCCTACACATGC 64355677 CATATAACAAAATACATAAGTTCAAAAGTACCAAAGTGATAGCTTCATAGTGTGATGAGGTCTCC 66 CATATAACAAAATACATAAGTTCAAAAGTACCAAAGTGATAGCTTCATAGTGTGATGAGGTCTCC ** * 64355742 GACGACTCCCAATCTAAGCTAGCTTTGATATTCACTGTAAAACACAAAAAAGTAAACAGAGTAAG 131 GACGACTCCCAATCTAAGCTAGCTTCAATATTAACTGTAAAACACAAAAAAGTAAACAGAGTAAG * 64355807 CTATAAAGCTTAGTAAGCTCGTATAGTTAATAAGTCATTTTGGTATATGTTAGTAATGGATTT 196 CTACAAAGCTTAGTAAGCTCGTATAGTTAATAAGTCATTTTGGTATATGTTAGTAATGGATTT * 64355870 AGCCAACTCAAATGGCTAAATCCATTACTAACATATACCAAAATGACCATAACTCCTATACATGC 1 AGCCAACTCAAATGGCTAAATCCATTACTAACATATACCAAAATGACCATAACTCCTACACATGC 64355935 CATATAACAAAATACATAAGTTCAAAAGTACCAAAGTGATAGCTTCATAGTGTGATGAGGTCTCC 66 CATATAACAAAATACATAAGTTCAAAAGTACCAAAGTGATAGCTTCATAGTGTGATGAGGTCTCC * * * 64356000 GACGACTTCCAATCTGAGCTAGCTTCAATATTAACTGTAAAACACAAAAAAGTAAATAGAGTAAG 131 GACGACTCCCAATCTAAGCTAGCTTCAATATTAACTGTAAAACACAAAAAAGTAAACAGAGTAAG 64356065 CTACAAAGCTTAGTAAGCTCGTATAGTTAATAAGTC 196 CTACAAAGCTTAGTAAGCTCGTATAGTTAATAAGTC 64356101 TTACCATTCA Statistics Matches: 221, Mismatches: 10, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 258 221 1.00 ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27 Consensus pattern (258 bp): AGCCAACTCAAATGGCTAAATCCATTACTAACATATACCAAAATGACCATAACTCCTACACATGC CATATAACAAAATACATAAGTTCAAAAGTACCAAAGTGATAGCTTCATAGTGTGATGAGGTCTCC GACGACTCCCAATCTAAGCTAGCTTCAATATTAACTGTAAAACACAAAAAAGTAAACAGAGTAAG CTACAAAGCTTAGTAAGCTCGTATAGTTAATAAGTCATTTTGGTATATGTTAGTAATGGATTT Found at i:64357984 original size:15 final size:15 Alignment explanation
Indices: 64357964--64357993 Score: 60 Period size: 15 Copynumber: 2.0 Consensus size: 15 64357954 CAAACTCTTG 64357964 TGATCAGTAAAAATA 1 TGATCAGTAAAAATA 64357979 TGATCAGTAAAAATA 1 TGATCAGTAAAAATA 64357994 CTTCAAAGCG Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 15 1.00 ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27 Consensus pattern (15 bp): TGATCAGTAAAAATA Found at i:64358955 original size:2 final size:2 Alignment explanation
Indices: 64358948--64358984 Score: 74 Period size: 2 Copynumber: 18.5 Consensus size: 2 64358938 TAAAACATGC 64358948 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 64358985 TAGTTATAAA Statistics Matches: 35, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 35 1.00 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (2 bp): TA Found at i:64365593 original size:11 final size:11 Alignment explanation
Indices: 64365577--64365601 Score: 50 Period size: 11 Copynumber: 2.3 Consensus size: 11 64365567 AATAATTATC 64365577 TTATTTTATTT 1 TTATTTTATTT 64365588 TTATTTTATTT 1 TTATTTTATTT 64365599 TTA 1 TTA 64365602 AGATTCATTT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80 Consensus pattern (11 bp): TTATTTTATTT Found at i:64365612 original size:17 final size:17 Alignment explanation
Indices: 64365592--64365633 Score: 75 Period size: 17 Copynumber: 2.5 Consensus size: 17 64365582 TTATTTTTAT 64365592 TTTATTTTTAAGATTCA 1 TTTATTTTTAAGATTCA 64365609 TTTATTTTTAAGATTCA 1 TTTATTTTTAAGATTCA * 64365626 TTTGTTTT 1 TTTATTTT 64365634 CCTTTTAAAA Statistics Matches: 24, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 17 24 1.00 ACGTcount: A:0.24, C:0.05, G:0.07, T:0.64 Consensus pattern (17 bp): TTTATTTTTAAGATTCA Found at i:64369266 original size:18 final size:17 Alignment explanation
Indices: 64369243--64369278 Score: 54 Period size: 18 Copynumber: 2.1 Consensus size: 17 64369233 ATAATGTTAT * 64369243 ATATAATATAAATATAAA 1 ATATAAAATAAAT-TAAA 64369261 ATATAAAATAAATTAAA 1 ATATAAAATAAATTAAA 64369278 A 1 A 64369279 GTTATGCATG Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 17 5 0.29 18 12 0.71 ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31 Consensus pattern (17 bp): ATATAAAATAAATTAAA Found at i:64370260 original size:41 final size:43 Alignment explanation
Indices: 64370156--64370296 Score: 137 Period size: 41 Copynumber: 3.3 Consensus size: 43 64370146 TATGTGTTCT ** * * 64370156 CGTGTAAGACCACGTCTGGGA-TGTTGGCATCGGTATATGTGGTTA 1 CGTGTAAGACCATATCTGGGACAG-TGGCATC-G-ATATGTGATTA * * * 64370201 CGTGTAAGACCATGTCTGGGACA-TCGGCATTG-TATTTGATT- 1 CGTGTAAGACCATATCTGGGACAGT-GGCATCGATATGTGATTA * 64370242 CGTGTAAGACCCTATCTGGGACAGTGGCATCGATATGTGATTA 1 CGTGTAAGACCATATCTGGGACAGTGGCATCGATATGTGATTA * 64370285 CATGTAAGACCA 1 CGTGTAAGACCA 64370297 CGTTCGGGAC Statistics Matches: 80, Mismatches: 11, Indels: 12 0.78 0.11 0.12 Matches are distributed among these distances: 41 27 0.34 42 16 0.20 43 10 0.12 44 2 0.03 45 25 0.31 ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30 Consensus pattern (43 bp): CGTGTAAGACCATATCTGGGACAGTGGCATCGATATGTGATTA Found at i:64370314 original size:84 final size:86 Alignment explanation
Indices: 64370155--64370318 Score: 203 Period size: 84 Copynumber: 1.9 Consensus size: 86 64370145 ATATGTGTTC * * * * * 64370155 TCGTGTAAGACCACGTCTGGGATGTTGGCATCGGTATATGTGGTTACGTGTAAGACCATGTCTGG 1 TCGTGTAAGACCACATCTGGGAAGTTGGCATCGGTATATGTGATTACATGTAAGACCACGTCTGG 64370220 GACATCGGCATTGTATTTGAT 66 GACATCGGCATTGTATTTGAT 64370241 TCGTGTAAGACC-CTATCTGGGACAG-TGGCATC-G-ATATGTGATTACATGTAAGACCACGT-T 1 TCGTGTAAGACCAC-ATCTGGGA-AGTTGGCATCGGTATATGTGATTACATGTAAGACCACGTCT * * 64370301 CGGGACGTTGGCATTGTA 64 -GGGACATCGGCATTGTA 64370319 CGATATATGT Statistics Matches: 68, Mismatches: 7, Indels: 8 0.82 0.08 0.10 Matches are distributed among these distances: 83 1 0.01 84 38 0.56 85 2 0.03 86 26 0.38 87 1 0.01 ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30 Consensus pattern (86 bp): TCGTGTAAGACCACATCTGGGAAGTTGGCATCGGTATATGTGATTACATGTAAGACCACGTCTGG GACATCGGCATTGTATTTGAT Found at i:64371269 original size:36 final size:36 Alignment explanation
Indices: 64371181--64371294 Score: 183 Period size: 36 Copynumber: 3.1 Consensus size: 36 64371171 CCTTTAGCTC * * * 64371181 GAATAGTCCCCACACGTAGTTATCGGGTCTTACCCG 1 GAATAATCTCCACACGTAGTCATCGGGTCTTACCCG * 64371217 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG 1 GA-ATAATCTCCACACGTAGTCATCGGGTCTTACCCG 64371254 GAATAATCTCCACACGTAGTCATCGGGTCTTACCCG 1 GAATAATCTCCACACGTAGTCATCGGGTCTTACCCG 64371290 GAATA 1 GAATA 64371295 TATTTCCAAG Statistics Matches: 72, Mismatches: 5, Indels: 2 0.91 0.06 0.03 Matches are distributed among these distances: 36 40 0.56 37 32 0.44 ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24 Consensus pattern (36 bp): GAATAATCTCCACACGTAGTCATCGGGTCTTACCCG Found at i:64371490 original size:48 final size:48 Alignment explanation
Indices: 64371432--64371570 Score: 260 Period size: 48 Copynumber: 2.9 Consensus size: 48 64371422 ATATACACAC * 64371432 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT 64371480 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * 64371528 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA 64371571 CATATATATT Statistics Matches: 89, Mismatches: 2, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 48 89 1.00 ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34 Consensus pattern (48 bp): ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT Found at i:64373227 original size:44 final size:44 Alignment explanation
Indices: 64373178--64373265 Score: 176 Period size: 44 Copynumber: 2.0 Consensus size: 44 64373168 AACCTTCAAG 64373178 AAAGAAGAAAAAATATATGTACTAAGAGCTTCAAACTACTTGGC 1 AAAGAAGAAAAAATATATGTACTAAGAGCTTCAAACTACTTGGC 64373222 AAAGAAGAAAAAATATATGTACTAAGAGCTTCAAACTACTTGGC 1 AAAGAAGAAAAAATATATGTACTAAGAGCTTCAAACTACTTGGC 64373266 CGAATATCAA Statistics Matches: 44, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 44 44 1.00 ACGTcount: A:0.48, C:0.14, G:0.16, T:0.23 Consensus pattern (44 bp): AAAGAAGAAAAAATATATGTACTAAGAGCTTCAAACTACTTGGC Found at i:64374774 original size:2 final size:2 Alignment explanation
Indices: 64374767--64374800 Score: 68 Period size: 2 Copynumber: 17.0 Consensus size: 2 64374757 CGGCATTTGC 64374767 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 64374801 GTTGTGGTGC Statistics Matches: 32, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 32 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:64382000 original size:19 final size:19 Alignment explanation
Indices: 64381976--64382054 Score: 126 Period size: 19 Copynumber: 4.2 Consensus size: 19 64381966 AATCTTTAAG 64381976 GATATGCAATCTTAGATAT 1 GATATGCAATCTTAGATAT 64381995 GATATGCAATCTTAGATAT 1 GATATGCAATCTTAGATAT 64382014 GATA--CAATCTTAGATAT 1 GATATGCAATCTTAGATAT 64382031 GATATGCAATCTTAAAGATAT 1 GATATGCAATCTT--AGATAT 64382052 GAT 1 GAT 64382055 CTTGTAATCT Statistics Matches: 56, Mismatches: 0, Indels: 6 0.90 0.00 0.10 Matches are distributed among these distances: 17 17 0.30 19 30 0.54 21 9 0.16 ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35 Consensus pattern (19 bp): GATATGCAATCTTAGATAT Found at i:64382006 original size:36 final size:35 Alignment explanation
Indices: 64381966--64382053 Score: 117 Period size: 36 Copynumber: 2.4 Consensus size: 35 64381956 ATGGAAATAT 64381966 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC 1 AATC-TTAA-GATATGACAATCTTAGATATGATATGC 64382002 AATCTT-AGATATGATACAATCTTAGATATGATATGC 1 AATCTTAAGATATG--ACAATCTTAGATATGATATGC 64382038 AATCTTAAAGATATGA 1 AATCTT-AAGATATGA 64382054 TCTTGTAATC Statistics Matches: 47, Mismatches: 0, Indels: 10 0.82 0.00 0.18 Matches are distributed among these distances: 33 6 0.13 34 1 0.02 35 2 0.04 36 31 0.66 38 7 0.15 ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35 Consensus pattern (35 bp): AATCTTAAGATATGACAATCTTAGATATGATATGC Found at i:64387166 original size:14 final size:13 Alignment explanation
Indices: 64387143--64387187 Score: 63 Period size: 13 Copynumber: 3.4 Consensus size: 13 64387133 AAAGGGGGAT * 64387143 AAAAAGAAAAGAG 1 AAAAAGAAAAAAG * 64387156 AAAGAGAAAAAAAG 1 AAAAAG-AAAAAAG 64387170 AAAAAGAAAAAAG 1 AAAAAGAAAAAAG 64387183 AAAAA 1 AAAAA 64387188 ATGGAGAGGC Statistics Matches: 28, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 13 17 0.61 14 11 0.39 ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00 Consensus pattern (13 bp): AAAAAGAAAAAAG Found at i:64387167 original size:21 final size:21 Alignment explanation
Indices: 64387143--64387188 Score: 67 Period size: 21 Copynumber: 2.2 Consensus size: 21 64387133 AAAGGGGGAT * 64387143 AAAAAG-AAAAGAGAAAGAGAA 1 AAAAAGAAAAAGA-AAAAAGAA 64387164 AAAAAGAAAAAGAAAAAAGAA 1 AAAAAGAAAAAGAAAAAAGAA 64387185 AAAA 1 AAAA 64387189 TGGAGAGGCC Statistics Matches: 23, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 21 17 0.74 22 6 0.26 ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00 Consensus pattern (21 bp): AAAAAGAAAAAGAAAAAAGAA Found at i:64387173 original size:7 final size:7 Alignment explanation
Indices: 64387143--64387188 Score: 51 Period size: 7 Copynumber: 6.7 Consensus size: 7 64387133 AAAGGGGGAT 64387143 AAAAAGA 1 AAAAAGA * 64387150 AAAGAG- 1 AAAAAGA * 64387156 AAAGAGA 1 AAAAAGA 64387163 AAAAA-A 1 AAAAAGA 64387169 GAAAAAGA 1 -AAAAAGA 64387177 AAAAAGA 1 AAAAAGA 64387184 AAAAA 1 AAAAA 64387189 TGGAGAGGCC Statistics Matches: 34, Mismatches: 2, Indels: 6 0.81 0.05 0.14 Matches are distributed among these distances: 6 7 0.21 7 26 0.76 8 1 0.03 ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00 Consensus pattern (7 bp): AAAAAGA Found at i:64388254 original size:44 final size:44 Alignment explanation
Indices: 64388191--64388822 Score: 394 Period size: 44 Copynumber: 14.4 Consensus size: 44 64388181 GATCTAAGAT * * * * 64388191 GATTTGGCATCTCTTTATTGGCAGAGAGTAGATTGAAGACAACA 1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA * * * 64388235 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATGACT 1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA * * * * * 64388279 GATTTGGCATCTCTGTATTCAGCGGAGAGCAGATTGAAGACATAGCT 1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATAACA * * ** * * * 64388326 GATTTGGC-TTTCATGTGTTTAC-GTTGAAGCAAATCTAAGAT---- 1 GATTTGGCATCTC-TGTATTGGCAG-AG-AGCAGATCGAAGATAACA * * 64388367 GATTTGGCATCTCTGTATTGGCAGAGAGAAGATTGAAGATAACA 1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA * * * * 64388411 GAATTGGCATCTCTGTATTGGCAGAAAGCAGATCAAAGATGACA 1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA * * 64388455 GATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGCTA 1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATAAC-A * * ** * 64388503 -ATTTGGCTTCCACGTGT-TT-AAATTGA-AGCA-AGTCTAAGAT---- 1 GATTTGGCAT-CTC-TGTATTGGCA--GAGAGCAGA-TCGAAGATAACA * * 64388543 GATTTGGCATCTTTGTATTGGCAGAGAGCAGATCGAAGATAGCA 1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA * ** * * 64388587 GATTTGGCATCTCTGTATTGGCAGAGAGTAGATAAAATATGACA 1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA * * * * 64388631 GATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAAACATAGCT 1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCG--AAGATAACA * * * ** * 64388678 GATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAGAT---- 1 GATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATAACA 64388719 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-A 1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-ACA * * * * 64388763 GATTTGGCGTCTCTGTATTGTCAGAGAGCA-AGTTGAAGATAGCA 1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGA-TCGAAGATAACA * 64388807 GATTTGGCATCCCTGT 1 GATTTGGCATCTCTGT 64388823 GTTTACAAGG Statistics Matches: 454, Mismatches: 89, Indels: 90 0.72 0.14 0.14 Matches are distributed among these distances: 39 11 0.02 40 39 0.09 41 35 0.08 42 4 0.01 43 1 0.00 44 218 0.48 45 53 0.12 46 7 0.02 47 66 0.15 48 14 0.03 49 6 0.01 ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29 Consensus pattern (44 bp): GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA Found at i:64388468 original size:176 final size:176 Alignment explanation
Indices: 64388174--64388822 Score: 962 Period size: 176 Copynumber: 3.7 Consensus size: 176 64388164 GTATTTATAC * * * * * 64388174 TGAAGCAGATCTAAGATGATTTGGCATCTCTTTATTGGCAGAGAGTAGATTGAAGACAACAGATT 1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT * * * * 64388239 TGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATGACTGATTTGGCATCTCTGTATTCAGCGG 66 TGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGG * * * 64388304 AGAGCAGATTGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGT 131 AGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGT * * * 64388350 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGAAGATTGAAGATAACAGAAT 1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT * 64388415 TGGCATCTCTGTATTGGCAGAAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGG 66 TGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGG * ** 64388480 AGAGCAGATCGAAGACATAGCTAATTTGGCTTCCACGTGTTTAAAT 131 AGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGT * * * 64388526 TGAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATT 1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT * * * 64388591 TGGCATCTCTGTATTGGCAGAGAGTAGATAAAATATGACAGATTTGGCATCTCTGTATTCGGCGG 66 TGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGG * 64388656 AGAGCAGATCGAAAACATAGCTGATTTGGCTTCCACGTGTTTACGT 131 AGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGT * 64388702 TGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-AGAT 1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-ACAGAT * * ** * 64388766 TTGGCGTCTCTGTATTGTCAGAGAGCA-AGTTGAAGAT-AGCAGATTTGGCATCCCTGT 65 TTGGCATCTCTGTATTGGCAGAGAGCAGA-TCAAAGATGA-CAGATTTGGCATCTCTGT 64388823 GTTTACAAGG Statistics Matches: 431, Mismatches: 39, Indels: 6 0.91 0.08 0.01 Matches are distributed among these distances: 175 2 0.00 176 429 1.00 ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29 Consensus pattern (176 bp): TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT TGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGG AGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGT Found at i:64388845 original size:44 final size:44 Alignment explanation
Indices: 64388795--64388947 Score: 116 Period size: 46 Copynumber: 3.4 Consensus size: 44 64388785 AGAGAGCAAG 64388795 TTGAAGATAGCAGATTTGGCATCCCTGTGTTTACAAGGAACAGA 1 TTGAAGATAGCAGATTTGGCATCCCTGTGTTTACAAGGAACAGA * * * * * * * 64388839 TCGAAGACATAGTAGATCTGACATTCCTGTGCTTGC-AGCGAAGCAGA 1 TTGAAG--ATAGCAGATTTGGCATCCCTGTGTTTACAAG-GAA-CAGA ** * * 64388886 TTGAAGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAACA-A 1 TTGAAGATAGCAG-ATTTGGCATCCCTGTGTTTACAAGGAACAGA * 64388928 GTTGAAGATAGTAGATTTGG 1 -TTGAAGATAGCAGATTTGG 64388948 TATCTCCATA Statistics Matches: 80, Mismatches: 20, Indels: 18 0.68 0.17 0.15 Matches are distributed among these distances: 42 2 0.03 43 12 0.15 44 24 0.30 45 7 0.09 46 26 0.32 47 9 0.11 ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28 Consensus pattern (44 bp): TTGAAGATAGCAGATTTGGCATCCCTGTGTTTACAAGGAACAGA Found at i:64389098 original size:45 final size:45 Alignment explanation
Indices: 64389017--64389213 Score: 200 Period size: 45 Copynumber: 4.4 Consensus size: 45 64389007 TACATCGAAG * * * * 64389017 CAGATCCAAGATGACAGATTTGACATCTTTGTATTAGACGGGGAA 1 CAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAA * * * * * 64389062 CATATCGGAGATAACATATTTGGCATCTCTGCATTAGAC-GGGAG 1 CAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAA * * * * * 64389106 CAGATTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGACGGGGAG 1 CAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAA * * * 64389150 CAGATCGAAGATAACAGATTTGGCGTCTCTATATTAGATGGGGAA 1 CAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAA * * * 64389195 CAAATCAAAGATAGCAGAT 1 CAGATCGAAGATAACAGAT 64389214 ATCGCCTTCC Statistics Matches: 125, Mismatches: 25, Indels: 4 0.81 0.16 0.03 Matches are distributed among these distances: 43 23 0.18 44 27 0.22 45 75 0.60 ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25 Consensus pattern (45 bp): CAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAA Found at i:64389579 original size:19 final size:19 Alignment explanation
Indices: 64389555--64389623 Score: 124 Period size: 19 Copynumber: 3.7 Consensus size: 19 64389545 AATCTTTAAG 64389555 GATATGCAATCTTAGATAT 1 GATATGCAATCTTAGATAT 64389574 GATATGCAATCTTAGATAT 1 GATATGCAATCTTAGATAT 64389593 GATA--CAATCTTAGATAT 1 GATATGCAATCTTAGATAT 64389610 GATATGCAATCTTA 1 GATATGCAATCTTA 64389624 AATTCTTGAA Statistics Matches: 48, Mismatches: 0, Indels: 4 0.92 0.00 0.08 Matches are distributed among these distances: 17 17 0.35 19 31 0.65 ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36 Consensus pattern (19 bp): GATATGCAATCTTAGATAT Found at i:64389585 original size:36 final size:35 Alignment explanation
Indices: 64389545--64389622 Score: 106 Period size: 36 Copynumber: 2.2 Consensus size: 35 64389535 ATGGAAATAT 64389545 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC 1 AATCTTT-A-GATATGACAATCTTAGATATGATATGC 64389581 AATC-TTAGATATGATACAATCTTAGATATGATATGC 1 AATCTTTAGATATG--ACAATCTTAGATATGATATGC 64389617 AATCTT 1 AATCTT 64389623 AAATTCTTGA Statistics Matches: 38, Mismatches: 0, Indels: 7 0.84 0.00 0.16 Matches are distributed among these distances: 33 6 0.16 34 1 0.03 35 2 0.05 36 28 0.74 37 1 0.03 ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37 Consensus pattern (35 bp): AATCTTTAGATATGACAATCTTAGATATGATATGC Found at i:64396086 original size:7 final size:7 Alignment explanation
Indices: 64396074--64396102 Score: 58 Period size: 7 Copynumber: 4.1 Consensus size: 7 64396064 TTTGGATTCT 64396074 TTTAAAA 1 TTTAAAA 64396081 TTTAAAA 1 TTTAAAA 64396088 TTTAAAA 1 TTTAAAA 64396095 TTTAAAA 1 TTTAAAA 64396102 T 1 T 64396103 GTAATCCTAT Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 22 1.00 ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45 Consensus pattern (7 bp): TTTAAAA Found at i:64399732 original size:3 final size:3 Alignment explanation
Indices: 64399724--64399765 Score: 84 Period size: 3 Copynumber: 14.0 Consensus size: 3 64399714 CTATTACATG 64399724 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT 64399766 GGCAAAAAAT Statistics Matches: 39, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 39 1.00 ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33 Consensus pattern (3 bp): AAT Found at i:64402339 original size:50 final size:52 Alignment explanation
Indices: 64402281--64402396 Score: 157 Period size: 50 Copynumber: 2.3 Consensus size: 52 64402271 TTAATAAAGT * 64402281 CATGCATTATGTAACTCTCATGTTAGCT-AAGTTTGCATCA-TAAATTACA-A 1 CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTA-AGA * * * 64402331 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTTCATCATTAAATTAAGT 1 CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTAAGA * 64402383 CATGCATTAAGTAA 1 CATGCATTATGTAA 64402397 TTCATTTGTT Statistics Matches: 58, Mismatches: 5, Indels: 4 0.87 0.07 0.06 Matches are distributed among these distances: 50 26 0.45 51 12 0.21 52 20 0.34 ACGTcount: A:0.34, C:0.16, G:0.12, T:0.37 Consensus pattern (52 bp): CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTAAGA Found at i:64402407 original size:52 final size:49 Alignment explanation
Indices: 64402268--64402401 Score: 137 Period size: 50 Copynumber: 2.7 Consensus size: 49 64402258 ATGTGTTCTG * * 64402268 CATTTAATAAAGTCATGCATTATGTAACTCTCATGTTAGCTAAGTTTGCAT 1 CATTAAATTAAGTCATGCATTATGTAA-T-TCATGTTAGCTAAGTTTGCAT * * * * 64402319 CA-TAAATTACA-ACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTTCAT 1 CATTAAATTA-AGTCATGCATTATGTAA-T-TCATGTTAGCT-AAGTTTGCAT * 64402370 CATTAAATTAAGTCATGCATTAAGTAATTCAT 1 CATTAAATTAAGTCATGCATTATGTAATTCAT 64402402 TTGTTATTTT Statistics Matches: 70, Mismatches: 9, Indels: 9 0.80 0.10 0.10 Matches are distributed among these distances: 50 34 0.49 51 16 0.23 52 20 0.29 ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38 Consensus pattern (49 bp): CATTAAATTAAGTCATGCATTATGTAATTCATGTTAGCTAAGTTTGCAT Found at i:64408114 original size:13 final size:13 Alignment explanation
Indices: 64408066--64408121 Score: 53 Period size: 13 Copynumber: 4.2 Consensus size: 13 64408056 CAAATAAACC 64408066 AAAATTGTATTACT 1 AAAATT-TATTACT ** 64408080 AAAATCCATCT-CT 1 AAAATTTAT-TACT 64408093 AAAATTTTATTACT 1 AAAA-TTTATTACT 64408107 AAAATTTATTA-T 1 AAAATTTATTACT 64408119 AAA 1 AAA 64408122 CATTAAAGAA Statistics Matches: 35, Mismatches: 4, Indels: 8 0.74 0.09 0.17 Matches are distributed among these distances: 12 4 0.11 13 16 0.46 14 15 0.43 ACGTcount: A:0.46, C:0.11, G:0.02, T:0.41 Consensus pattern (13 bp): AAAATTTATTACT Found at i:64409891 original size:20 final size:20 Alignment explanation
Indices: 64409866--64409918 Score: 63 Period size: 20 Copynumber: 2.7 Consensus size: 20 64409856 ATTTTTAATA * 64409866 TATTTTTAATAATTTATATT 1 TATTTTTAAGAATTTATATT ** * 64409886 TATTTTTAAGCTTTTTTATT 1 TATTTTTAAGAATTTATATT 64409906 TATTTTT-AGAATT 1 TATTTTTAAGAATT 64409919 ATTGTTAAGA Statistics Matches: 27, Mismatches: 6, Indels: 1 0.79 0.18 0.03 Matches are distributed among these distances: 19 4 0.15 20 23 0.85 ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66 Consensus pattern (20 bp): TATTTTTAAGAATTTATATT Found at i:64419066 original size:43 final size:42 Alignment explanation
Indices: 64418944--64419097 Score: 195 Period size: 42 Copynumber: 3.7 Consensus size: 42 64418934 CTAAGTTTAT * * * * 64418944 GTGTAAGACCATATCT-GGATATGGAATCAGTATGATACTTC 1 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTC 64418985 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTC 1 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTC * * * * 64419027 GTGTAAGACCATAGT-TGGGCTATTGGCATCCATATGAGATTAC 1 GTGTAAGACCATA-TCTAGGATA-TGGCATCAATATGAGATTTC * 64419070 ATGTAAGACCATATCTAGGATATGGCAT 1 GTGTAAGACCATATCTAGGATATGGCAT 64419098 TGGTATGGTA Statistics Matches: 98, Mismatches: 11, Indels: 7 0.84 0.09 0.06 Matches are distributed among these distances: 41 16 0.16 42 46 0.47 43 36 0.37 ACGTcount: A:0.32, C:0.15, G:0.23, T:0.31 Consensus pattern (42 bp): GTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTC Found at i:64422083 original size:27 final size:27 Alignment explanation
Indices: 64422016--64422085 Score: 97 Period size: 27 Copynumber: 2.6 Consensus size: 27 64422006 ATGGAGGAAG * * * 64422016 TACT-ATACTGGTGACTATGTCACATT 1 TACTGATACTGGTGGCTATGCCACAAT * 64422042 TACTGTTACTGGTGGCTATGCCACAAT 1 TACTGATACTGGTGGCTATGCCACAAT 64422069 TACTGATACTGGTGGCT 1 TACTGATACTGGTGGCT 64422086 TTACCACATT Statistics Matches: 38, Mismatches: 5, Indels: 1 0.86 0.11 0.02 Matches are distributed among these distances: 26 4 0.11 27 34 0.89 ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36 Consensus pattern (27 bp): TACTGATACTGGTGGCTATGCCACAAT Found at i:64422107 original size:27 final size:27 Alignment explanation
Indices: 64422021--64422107 Score: 93 Period size: 27 Copynumber: 3.2 Consensus size: 27 64422011 GGAAGTACTA * ** 64422021 TACTGGTGACTATGTCACATTTACTGT 1 TACTGGTGGCTATACCACATTTACTGT * * * 64422048 TACTGGTGGCTATGCCACAATTACTGA 1 TACTGGTGGCTATACCACATTTACTGT * * 64422075 TACTGGTGGCTTTACCACATTTATTGT 1 TACTGGTGGCTATACCACATTTACTGT * 64422102 TCCTGG 1 TACTGG 64422108 CAGCTACGCT Statistics Matches: 50, Mismatches: 10, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 27 50 1.00 ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38 Consensus pattern (27 bp): TACTGGTGGCTATACCACATTTACTGT Found at i:64424058 original size:8 final size:8 Alignment explanation
Indices: 64424047--64424086 Score: 55 Period size: 8 Copynumber: 5.0 Consensus size: 8 64424037 TTTAAGAAAT 64424047 TAATATAA 1 TAATATAA * 64424055 TAATATAT 1 TAATATAA 64424063 TAATATAA 1 TAATATAA 64424071 T-ATAATAA 1 TAAT-ATAA 64424079 TAATATAA 1 TAATATAA 64424087 AACAAACAAA Statistics Matches: 28, Mismatches: 2, Indels: 4 0.82 0.06 0.12 Matches are distributed among these distances: 7 2 0.07 8 24 0.86 9 2 0.07 ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40 Consensus pattern (8 bp): TAATATAA Found at i:64425026 original size:44 final size:43 Alignment explanation
Indices: 64424978--64425124 Score: 116 Period size: 44 Copynumber: 3.2 Consensus size: 43 64424968 CCTTGGGTCA * 64424978 ATGAGGCACTAATAGTGTCGTACTGTTACTTCGACTGCGTGTCG 1 ATGAGGCACTAATAGTGTCGTACTGTTACTT-GACTTCGTGTCG ** * * * * 64425022 ATGAGGCACTTCGT-GTGTTGTACTGTTTCTATTACTTCGATTTAATCTG 1 ATGAGGCAC-TAATAGTGTCGTACTGTTACT-TGACTTCG---T-GTC-G * * * 64425071 ATAAGGCACTAATAGAGTCGTACTGTTACTTTGACTTTGTGTCG 1 ATGAGGCACTAATAGTGTCGTACTGTTAC-TTGACTTCGTGTCG 64425115 ATGAGGCACT 1 ATGAGGCACT 64425125 TCGTGTGTTG Statistics Matches: 77, Mismatches: 17, Indels: 18 0.69 0.15 0.16 Matches are distributed among these distances: 44 38 0.49 45 5 0.06 46 1 0.01 47 1 0.01 48 4 0.05 49 27 0.35 50 1 0.01 ACGTcount: A:0.22, C:0.18, G:0.24, T:0.37 Consensus pattern (43 bp): ATGAGGCACTAATAGTGTCGTACTGTTACTTGACTTCGTGTCG Found at i:64425138 original size:44 final size:44 Alignment explanation
Indices: 64424992--64425141 Score: 115 Period size: 44 Copynumber: 3.3 Consensus size: 44 64424982 GGCACTAATA * ** 64424992 GTGTCGTACTGTTACTTCGACTGCGTGTCGATGAGGCACTTCGT 1 GTGTCGTACTGTTACTTTGACTTTGTGTCGATGAGGCACTTCGT * * * * * ** 64425036 GTGTTGTACTGTTTCTATT-ACTTCGATTTAATCTGATAAGGCAC-TAAT 1 GTGTCGTACTGTTACT-TTGACTT---TGT-GTC-GATGAGGCACTTCGT * 64425084 AGAGTCGTACTGTTACTTTGACTTTGTGTCGATGAGGCACTTCGT 1 -GTGTCGTACTGTTACTTTGACTTTGTGTCGATGAGGCACTTCGT * 64425129 GTGTTGTACTGTT 1 GTGTCGTACTGTT 64425142 TTTGTTACTT Statistics Matches: 77, Mismatches: 20, Indels: 18 0.67 0.17 0.16 Matches are distributed among these distances: 44 37 0.48 45 5 0.06 46 2 0.03 47 1 0.01 48 6 0.08 49 26 0.34 ACGTcount: A:0.18, C:0.17, G:0.25, T:0.40 Consensus pattern (44 bp): GTGTCGTACTGTTACTTTGACTTTGTGTCGATGAGGCACTTCGT Found at i:64425140 original size:93 final size:93 Alignment explanation
Indices: 64424981--64425174 Score: 293 Period size: 93 Copynumber: 2.1 Consensus size: 93 64424971 TGGGTCAATG * 64424981 AGGCACTAATAGTGTCGTACTGTTACTTCGACTGCGTGTCGATGAGGCACTTCGTGTGTTGTACT 1 AGGCACTAATAGAGTCGTACTGTTACTTCGACTGCGTGTCGATGAGGCACTTCGTGTGTTGTACT 64425046 GTTTCTATTACTTC-GATTTAAT-CTGATA 66 GTTTCTATTACTTCAG-TTTAATCCT-ATA * ** 64425074 AGGCACTAATAGAGTCGTACTGTTACTTTGACTTTGTGTCGATGAGGCACTTCGTGTGTTGTACT 1 AGGCACTAATAGAGTCGTACTGTTACTTCGACTGCGTGTCGATGAGGCACTTCGTGTGTTGTACT * * 64425139 GTTTTTGTTACTTCAGTTTAATCCTATA 66 GTTTCTATTACTTCAGTTTAATCCTATA * 64425167 AGGTACTA 1 AGGCACTA 64425175 GGTACCATAC Statistics Matches: 92, Mismatches: 7, Indels: 4 0.89 0.07 0.04 Matches are distributed among these distances: 93 89 0.97 94 3 0.03 ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40 Consensus pattern (93 bp): AGGCACTAATAGAGTCGTACTGTTACTTCGACTGCGTGTCGATGAGGCACTTCGTGTGTTGTACT GTTTCTATTACTTCAGTTTAATCCTATA Found at i:64428695 original size:14 final size:14 Alignment explanation
Indices: 64428676--64428706 Score: 53 Period size: 14 Copynumber: 2.2 Consensus size: 14 64428666 TGCTACTATT 64428676 TTACTATTATGTTG 1 TTACTATTATGTTG * 64428690 TTACTATTTTGTTG 1 TTACTATTATGTTG 64428704 TTA 1 TTA 64428707 TTGTTTGGAT Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 14 16 1.00 ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61 Consensus pattern (14 bp): TTACTATTATGTTG Found at i:64428940 original size:12 final size:12 Alignment explanation
Indices: 64428910--64428943 Score: 54 Period size: 11 Copynumber: 3.0 Consensus size: 12 64428900 TATATATTTT 64428910 AAAATT-ATATA 1 AAAATTAATATA 64428921 AAAA-TAATATA 1 AAAATTAATATA 64428932 AAAATTAATATA 1 AAAATTAATATA 64428944 GGCAGGCCAG Statistics Matches: 21, Mismatches: 0, Indels: 3 0.88 0.00 0.12 Matches are distributed among these distances: 10 1 0.05 11 13 0.62 12 7 0.33 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32 Consensus pattern (12 bp): AAAATTAATATA Found at i:64432302 original size:47 final size:46 Alignment explanation
Indices: 64432110--64432332 Score: 138 Period size: 47 Copynumber: 4.8 Consensus size: 46 64432100 CACATTATGA * * * * 64432110 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATTGGCATTGAGACGA- 1 GAGCCAGAGTAAGACCATGTCTGGGACATGGCA-TCGC-TTGAGA-TAT * * * * * * 64432158 GTGCTAGTGGAAGA-CATGTCTGGGACAT-GCTTCGGCCTTGAGATGT 1 GAGCCAGAGTAAGACCATGTCTGGGACATGGCATC-G-CTTGAGATAT * * * * * 64432204 AAGCTA-ATGTAAGA-CATGTCTGGGACAT-GCATCGGTT-ACAAAAT 1 GAGCCAGA-GTAAGACCATGTCTGGGACATGGCATCGCTTGA-GATAT 64432248 GATAGCCAGAGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT 1 G--AGCCAGAGTAAGACCATGTCTGGGACATGGCATCG-CTTGAGATAT * * 64432297 GAGCCA-ATGTAAGACTATGTTTGGGACATGGCATCG 1 GAGCCAGA-GTAAGACCATGTCTGGGACATGGCATCG 64432333 GCATCCTACC Statistics Matches: 138, Mismatches: 24, Indels: 27 0.73 0.13 0.14 Matches are distributed among these distances: 43 1 0.01 44 4 0.03 45 2 0.01 46 47 0.34 47 60 0.43 48 17 0.12 49 6 0.04 50 1 0.01 ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25 Consensus pattern (46 bp): GAGCCAGAGTAAGACCATGTCTGGGACATGGCATCGCTTGAGATAT Found at i:64432322 original size:140 final size:140 Alignment explanation
Indices: 64432065--64432326 Score: 339 Period size: 140 Copynumber: 1.9 Consensus size: 140 64432055 CACTTGTGTG * ** * 64432065 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGT 1 AGCTAATGTAAGACATGTCTGGGACATGCATCAGCCACAAAATGAGAGCCAGAGTAAGACCATGT * * * * * * 64432130 CTGGGATATGGCATTGGCATTGAGACGAGTGCTAGTGGAAGACATGTCTGGGACATGCTTCGGCC 66 CTGGGACATGGCATCGACATTGAGACGAGAGCCAATGGAAGACATGTCTGGGACATGCTTCGGCC 64432195 TTGAGATGTA 131 TTGAGATGTA * ** * 64432205 AGCTAATGTAAGACATGTCTGGGACATGCATCGGTTACAAAATGATAGCCAGAGTAAGACCATGT 1 AGCTAATGTAAGACATGTCTGGGACATGCATCAGCCACAAAATGAGAGCCAGAGTAAGACCATGT * * * 64432270 CTGGGACATGGCATCGAC-TTGAGA-TATGAGCCAATGTAAGACTATGTTTGGGACATG 66 CTGGGACATGGCATCGACATTGAGACGA-GAGCCAATGGAAGAC-ATGTCTGGGACATG 64432327 GCATCGGCAT Statistics Matches: 103, Mismatches: 17, Indels: 4 0.83 0.14 0.03 Matches are distributed among these distances: 138 1 0.01 139 17 0.17 140 85 0.83 ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25 Consensus pattern (140 bp): AGCTAATGTAAGACATGTCTGGGACATGCATCAGCCACAAAATGAGAGCCAGAGTAAGACCATGT CTGGGACATGGCATCGACATTGAGACGAGAGCCAATGGAAGACATGTCTGGGACATGCTTCGGCC TTGAGATGTA Found at i:64435303 original size:21 final size:21 Alignment explanation
Indices: 64435262--64435305 Score: 63 Period size: 21 Copynumber: 2.1 Consensus size: 21 64435252 TTAAGAAATT * 64435262 AATATAATAATATATTAATAA 1 AATATAATAATATAATAATAA 64435283 AATATAATAATAATAAT-ATAA 1 AATATAATAAT-ATAATAATAA 64435304 AA 1 AA 64435306 CAAATAAAGG Statistics Matches: 21, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 21 17 0.81 22 4 0.19 ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34 Consensus pattern (21 bp): AATATAATAATATAATAATAA Found at i:64437411 original size:21 final size:21 Alignment explanation
Indices: 64437387--64437440 Score: 56 Period size: 21 Copynumber: 2.6 Consensus size: 21 64437377 CGGGATGACA 64437387 ACACGGGCGTGTC-ATAAAGAC 1 ACACGGGCGTGTCTATAAA-AC * * * * 64437408 ACACAGGCATGTCTCTAAACC 1 ACACGGGCGTGTCTATAAAAC 64437429 ACACGGGCGTGT 1 ACACGGGCGTGT 64437441 GGTGTTGTTC Statistics Matches: 26, Mismatches: 6, Indels: 2 0.76 0.18 0.06 Matches are distributed among these distances: 21 22 0.85 22 4 0.15 ACGTcount: A:0.30, C:0.28, G:0.26, T:0.17 Consensus pattern (21 bp): ACACGGGCGTGTCTATAAAAC Found at i:64438830 original size:3 final size:3 Alignment explanation
Indices: 64438818--64439103 Score: 182 Period size: 3 Copynumber: 94.7 Consensus size: 3 64438808 GTTATTTTGC * * * 64438818 TAT T-T TAT TAT TAA AAT TAAT TAAT TAAT TAT TAC TAT TAT TAT TAT 1 TAT TAT TAT TAT TAT TAT T-AT T-AT T-AT TAT TAT TAT TAT TAT TAT * * * 64438865 T-T TCAC TAT TAT TAT TAT TAT TAA TA- TAT TCT TAT TAAT GTAT TAT 1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT * * * * 64438911 TAT TTT CTAC T-T TAT TAT TAT TAT T-G TAT TAT TAC TAT TAT TAT 1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT * * * * * 64438955 CAT CA- TAT TAT TA- AACT AAT TAAT T-T TA- TAT TGT TAT TAT TA- 1 TAT TAT TAT TAT TAT TA-T TAT T-AT TAT TAT TAT TAT TAT TAT TAT * * * ** 64438997 CAT TAAA TAT T-T TCT T-T TCG TATT TACT TGCAT TAT TAT TAT TAT 1 TAT T-AT TAT TAT TAT TAT TAT TA-T TA-T T--AT TAT TAT TAT TAT 64439042 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT 1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT 64439090 TAT TAT TAT TAT TA 1 TAT TAT TAT TAT TA 64439104 CCCTTTTACT Statistics Matches: 227, Mismatches: 33, Indels: 46 0.74 0.11 0.15 Matches are distributed among these distances: 2 19 0.08 3 176 0.78 4 28 0.12 5 3 0.01 6 1 0.00 ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60 Consensus pattern (3 bp): TAT Found at i:64438899 original size:14 final size:14 Alignment explanation
Indices: 64438822--64438914 Score: 59 Period size: 14 Copynumber: 6.6 Consensus size: 14 64438812 TTTTGCTATT 64438822 TTATTATTAA-A-A 1 TTATTATTAATATA 64438834 TTAATTAATTAAT-TA 1 TT-ATT-ATTAATATA * * 64438849 TTACTATTATTATTA 1 TTATTATTAATA-TA * * 64438864 TT-TTCACTATTATTA 1 TTATT-ATTAATA-TA 64438879 TTATTATTAATATA 1 TTATTATTAATATA * * 64438893 TTCTTATTAATGTA 1 TTATTATTAATATA 64438907 TTATTATT 1 TTATTATT 64438915 TTCTACTTTA Statistics Matches: 64, Mismatches: 9, Indels: 14 0.74 0.10 0.16 Matches are distributed among these distances: 12 2 0.03 13 8 0.12 14 29 0.45 15 23 0.36 16 2 0.03 ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58 Consensus pattern (14 bp): TTATTATTAATATA Found at i:64439137 original size:17 final size:17 Alignment explanation
Indices: 64439107--64439139 Score: 50 Period size: 17 Copynumber: 1.9 Consensus size: 17 64439097 ATTATTACCC 64439107 TTTTACTTTTTATTTTG 1 TTTTACTTTTTATTTTG 64439124 TTTTA-TTTTATATTTT 1 TTTTACTTTT-TATTTT 64439140 TCTCTTATTT Statistics Matches: 15, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 16 4 0.27 17 11 0.73 ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79 Consensus pattern (17 bp): TTTTACTTTTTATTTTG Found at i:64441188 original size:15 final size:15 Alignment explanation
Indices: 64441168--64441219 Score: 52 Period size: 15 Copynumber: 3.3 Consensus size: 15 64441158 ATGACACTTA * 64441168 ATGAATAAGAATATC 1 ATGAATAACAATATC * 64441183 ATGAATAACAATGTC 1 ATGAATAACAATATC 64441198 ATGCAATGACACAAT-TC 1 ATG-AAT-A-ACAATATC 64441215 ATGAA 1 ATGAA 64441220 AATAGTTAAG Statistics Matches: 32, Mismatches: 2, Indels: 5 0.82 0.05 0.13 Matches are distributed among these distances: 15 16 0.50 16 5 0.16 17 6 0.19 18 5 0.16 ACGTcount: A:0.48, C:0.13, G:0.13, T:0.25 Consensus pattern (15 bp): ATGAATAACAATATC Found at i:64442260 original size:26 final size:26 Alignment explanation
Indices: 64442224--64442333 Score: 175 Period size: 26 Copynumber: 4.2 Consensus size: 26 64442214 TGATACAAAT 64442224 TGATAATAGGTTAGGTAAATGTTCCA 1 TGATAATAGGTTAGGTAAATGTTCCA 64442250 TGATAATAGGTTAGGTAAATGTTCCA 1 TGATAATAGGTTAGGTAAATGTTCCA * * * 64442276 TGATAATGGGTTAGGTAAATATTTCA 1 TGATAATAGGTTAGGTAAATGTTCCA * * 64442302 TGATAATGGGTTAGGTAAATGTTTCA 1 TGATAATAGGTTAGGTAAATGTTCCA 64442328 TGATAA 1 TGATAA 64442334 GAATTTCATA Statistics Matches: 80, Mismatches: 4, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 26 80 1.00 ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36 Consensus pattern (26 bp): TGATAATAGGTTAGGTAAATGTTCCA Found at i:64449927 original size:62 final size:62 Alignment explanation
Indices: 64449796--64449915 Score: 183 Period size: 60 Copynumber: 2.0 Consensus size: 62 64449786 ATGAGGTTGG * * 64449796 GAATATTTTCTCATTCGGCCCTTGTTCTTTTTTCGCGTGTTATATTTTAGTCATTTATTTGA 1 GAATATTTTCTCATTCGGCCCTCGTTCTTTTTTCGCGTGTTATATTTTAGTCATCTATTTGA * 64449858 GAATATTTTC-CTATTCGGCCC-CGTTCTTTTTT-GCGTGTTATATTTTAGTCCTCTATTT 1 GAATATTTTCTC-ATTCGGCCCTCGTTCTTTTTTCGCGTGTTATATTTTAGTCATCTATTT 64449916 ACTTATTTAT Statistics Matches: 54, Mismatches: 3, Indels: 4 0.89 0.05 0.07 Matches are distributed among these distances: 60 24 0.44 61 11 0.20 62 19 0.35 ACGTcount: A:0.15, C:0.18, G:0.14, T:0.53 Consensus pattern (62 bp): GAATATTTTCTCATTCGGCCCTCGTTCTTTTTTCGCGTGTTATATTTTAGTCATCTATTTGA Found at i:64452012 original size:46 final size:46 Alignment explanation
Indices: 64451960--64452135 Score: 169 Period size: 46 Copynumber: 3.8 Consensus size: 46 64451950 TATTTGGGCA * * 64451960 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCAAATG 1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG * ** * * * * * 64452006 TCCGAGCTGGTTGAGTTGAGTCTAAGTTC-GTGA--GACGTAACTAGGCA 1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG * 64452053 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG 1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG * * * 64452099 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG 1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG 64452136 GCGGGTTACA Statistics Matches: 101, Mismatches: 22, Indels: 14 0.74 0.16 0.10 Matches are distributed among these distances: 43 5 0.05 45 3 0.03 46 60 0.59 47 26 0.26 48 3 0.03 50 4 0.04 ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29 Consensus pattern (46 bp): TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG Found at i:64452115 original size:93 final size:93 Alignment explanation
Indices: 64451956--64452128 Score: 292 Period size: 93 Copynumber: 1.9 Consensus size: 93 64451946 AGGATATTTG * * * 64451956 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAGCTGGTTGAG 1 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG 64452021 TTGAGTCTAAGTTCGTGAGACGTAACTA 66 TTGAGTCTAAGTTCGTGAGACGTAACTA * * 64452049 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG 1 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG * 64452114 TTGAGTCTGAGTTCG 66 TTGAGTCTAAGTTCG 64452129 CTTATGGGCG Statistics Matches: 74, Mismatches: 6, Indels: 0 0.93 0.08 0.00 Matches are distributed among these distances: 93 74 1.00 ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28 Consensus pattern (93 bp): GGCATCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG TTGAGTCTAAGTTCGTGAGACGTAACTA Found at i:64458066 original size:35 final size:34 Alignment explanation
Indices: 64458000--64458070 Score: 115 Period size: 35 Copynumber: 2.1 Consensus size: 34 64457990 GGAAGGTCTG ** 64458000 AATGAGGAAATCAAGCTGTTGATTGGGATTCTCTA 1 AATGAGGAAATCAAGCTGTTGATTGAAATTCT-TA 64458035 AATGAGGAAATCAAGCTGTTGATTGAAATTCTTA 1 AATGAGGAAATCAAGCTGTTGATTGAAATTCTTA 64458069 AA 1 AA 64458071 ATACGGGAGT Statistics Matches: 34, Mismatches: 2, Indels: 1 0.92 0.05 0.03 Matches are distributed among these distances: 34 4 0.12 35 30 0.88 ACGTcount: A:0.37, C:0.10, G:0.23, T:0.31 Consensus pattern (34 bp): AATGAGGAAATCAAGCTGTTGATTGAAATTCTTA Found at i:64467412 original size:10 final size:10 Alignment explanation
Indices: 64467384--64467442 Score: 77 Period size: 10 Copynumber: 6.0 Consensus size: 10 64467374 TGAAATTCTA 64467384 AAAGATAAAT 1 AAAGATAAAT * 64467394 AAA-ATAATT 1 AAAGATAAAT * 64467403 AAAGATAATT 1 AAAGATAAAT 64467413 AAAGATAAAT 1 AAAGATAAAT 64467423 AAAGATAAAT 1 AAAGATAAAT 64467433 GAAA-ATAAAT 1 -AAAGATAAAT 64467443 CCTAAAATTA Statistics Matches: 45, Mismatches: 2, Indels: 4 0.88 0.04 0.08 Matches are distributed among these distances: 9 8 0.18 10 34 0.76 11 3 0.07 ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24 Consensus pattern (10 bp): AAAGATAAAT Found at i:64468232 original size:94 final size:96 Alignment explanation
Indices: 64468096--64468275 Score: 292 Period size: 94 Copynumber: 1.9 Consensus size: 96 64468086 ATTTAATTTA * * * * 64468096 TTTATTTTTACTTAGGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACC-CA 1 TTTATTTTTACCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA * 64468160 CCCCGGTTACTTAGCCCAACATGCTCTAATT 66 CCCCGGTTACTCAGCCCAACATGCTCTAATT * 64468191 TTTATTTTT-CCTAAGAACATATCGAATCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA 1 TTTATTTTTACCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA 64468255 CCCCGGTTACTCAGCCCAACA 66 CCCCGGTTACTCAGCCCAACA 64468276 CTTTCTTAGA Statistics Matches: 78, Mismatches: 6, Indels: 2 0.91 0.07 0.02 Matches are distributed among these distances: 94 47 0.60 95 31 0.40 ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27 Consensus pattern (96 bp): TTTATTTTTACCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA CCCCGGTTACTCAGCCCAACATGCTCTAATT Found at i:64469072 original size:10 final size:9 Alignment explanation
Indices: 64469062--64469128 Score: 54 Period size: 10 Copynumber: 7.7 Consensus size: 9 64469052 ATCTGAAAAT 64469062 AATAAATAA 1 AATAAATAA * 64469071 TA-AAAT-A 1 AATAAATAA 64469078 -ATAAGATAA 1 AATAA-ATAA 64469087 AATAAATAA 1 AATAAATAA * 64469096 AA-ATA-AA 1 AATAAATAA 64469103 AATAAAATAA 1 AAT-AAATAA 64469113 AATAAAATAA 1 AAT-AAATAA 64469123 AATAAA 1 AATAAA 64469129 AATTGGGTTG Statistics Matches: 48, Mismatches: 3, Indels: 14 0.74 0.05 0.22 Matches are distributed among these distances: 6 1 0.02 7 7 0.15 8 8 0.17 9 13 0.27 10 19 0.40 ACGTcount: A:0.78, C:0.00, G:0.01, T:0.21 Consensus pattern (9 bp): AATAAATAA Found at i:64469091 original size:21 final size:20 Alignment explanation
Indices: 64469065--64469122 Score: 64 Period size: 21 Copynumber: 2.7 Consensus size: 20 64469055 TGAAAATAAT 64469065 AAATAATAAAATAATAAGATA 1 AAATAATAAAATAATAA-ATA 64469086 AAATAAATAAAAATAA-AAATA 1 AAAT-AAT-AAAATAATAAATA 64469107 AAATAAAATAAAATAA 1 AAAT--AATAAAATAA 64469123 AATAAAAATT Statistics Matches: 34, Mismatches: 0, Indels: 6 0.85 0.00 0.15 Matches are distributed among these distances: 21 18 0.53 22 9 0.26 23 7 0.21 ACGTcount: A:0.78, C:0.00, G:0.02, T:0.21 Consensus pattern (20 bp): AAATAATAAAATAATAAATA Found at i:64469129 original size:5 final size:5 Alignment explanation
Indices: 64469069--64469129 Score: 74 Period size: 5 Copynumber: 12.4 Consensus size: 5 64469059 AATAATAAAT * 64469069 AATAA AAT-- AATAA GATAA AAT-A AATAAA AATAAA AATAA AATAA AATAA 1 AATAA AATAA AATAA AATAA AATAA AAT-AA AAT-AA AATAA AATAA AATAA 64469118 AATAA AATAA AA 1 AATAA AATAA AA 64469130 ATTGGGTTGC Statistics Matches: 50, Mismatches: 2, Indels: 8 0.83 0.03 0.13 Matches are distributed among these distances: 3 3 0.06 4 4 0.08 5 33 0.66 6 10 0.20 ACGTcount: A:0.79, C:0.00, G:0.02, T:0.20 Consensus pattern (5 bp): AATAA Found at i:64469131 original size:26 final size:26 Alignment explanation
Indices: 64469058--64469129 Score: 53 Period size: 26 Copynumber: 2.8 Consensus size: 26 64469048 TAATATCTGA * * 64469058 AAATAATAAATAATAAA-ATAATAAGAT 1 AAATAA-AAATAA-AAATAAAATAAAAT * 64469085 AAA-ATAAATAAAAATAAAAATAAAAT 1 AAATAAAAATAAAAAT-AAAATAAAAT 64469111 AAA-ATAAAAT-AAAATAAAA 1 AAATA-AAAATAAAAATAAAA 64469130 ATTGGGTTGC Statistics Matches: 38, Mismatches: 4, Indels: 8 0.76 0.08 0.16 Matches are distributed among these distances: 24 3 0.08 25 10 0.26 26 18 0.47 27 7 0.18 ACGTcount: A:0.78, C:0.00, G:0.01, T:0.21 Consensus pattern (26 bp): AAATAAAAATAAAAATAAAATAAAAT Found at i:64471332 original size:38 final size:38 Alignment explanation
Indices: 64471281--64471358 Score: 147 Period size: 38 Copynumber: 2.1 Consensus size: 38 64471271 GGAAAGCACG * 64471281 TAGTTCAATTTGATCCTCAGTTACCCCTTGAGGTTTCA 1 TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA 64471319 TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA 1 TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA 64471357 TA 1 TA 64471359 CTAAGGCAAA Statistics Matches: 39, Mismatches: 1, Indels: 0 0.98 0.03 0.00 Matches are distributed among these distances: 38 39 1.00 ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38 Consensus pattern (38 bp): TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA Found at i:64471948 original size:12 final size:12 Alignment explanation
Indices: 64471927--64471960 Score: 59 Period size: 12 Copynumber: 2.8 Consensus size: 12 64471917 TGTAAAATAG * 64471927 TAATATTAAAAA 1 TAATAGTAAAAA 64471939 TAATAGTAAAAA 1 TAATAGTAAAAA 64471951 TAATAGTAAA 1 TAATAGTAAA 64471961 GGGGAAGTAG Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 12 21 1.00 ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29 Consensus pattern (12 bp): TAATAGTAAAAA Found at i:64472891 original size:10 final size:10 Alignment explanation
Indices: 64472872--64472931 Score: 79 Period size: 10 Copynumber: 6.0 Consensus size: 10 64472862 TGAAATTCTA 64472872 AAAGATAAAT 1 AAAGATAAAT 64472882 ACAA-ATAAAT 1 A-AAGATAAAT * 64472892 AAAGATAATT 1 AAAGATAAAT 64472902 AAAGATAAAT 1 AAAGATAAAT 64472912 AAAGATAAAT 1 AAAGATAAAT 64472922 GAAA-ATAAAT 1 -AAAGATAAAT 64472932 CCTAAAATTT Statistics Matches: 45, Mismatches: 2, Indels: 6 0.85 0.04 0.11 Matches are distributed among these distances: 9 2 0.04 10 38 0.84 11 5 0.11 ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22 Consensus pattern (10 bp): AAAGATAAAT Found at i:64481263 original size:17 final size:17 Alignment explanation
Indices: 64481241--64481273 Score: 66 Period size: 17 Copynumber: 1.9 Consensus size: 17 64481231 ATAAATATTT 64481241 ATAATGAAGATCAAACA 1 ATAATGAAGATCAAACA 64481258 ATAATGAAGATCAAAC 1 ATAATGAAGATCAAAC 64481274 CTAGACAAAC Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 17 16 1.00 ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18 Consensus pattern (17 bp): ATAATGAAGATCAAACA Found at i:64486179 original size:79 final size:80 Alignment explanation
Indices: 64486078--64486262 Score: 218 Period size: 79 Copynumber: 2.3 Consensus size: 80 64486068 ACGACTCGCT ** * 64486078 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC 1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGACCTT-ACCC * * 64486141 GGGTTTAGTAACTT-GCA 63 GGATATAGTAACTTAGCA * ** 64486158 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTTGTCCGG 1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGA-CCTTACCCGG * 64486222 ATATAGTCACTTAGCA 65 ATATAGTAACTTAGCA 64486238 CAAA-GCCTTCGGGACTTAGCCCGGA 1 CAAATGCCTTCGGGACTTAGCCCGGA 64486263 CATCATTCGA Statistics Matches: 91, Mismatches: 9, Indels: 10 0.83 0.08 0.09 Matches are distributed among these distances: 78 3 0.03 79 51 0.56 80 37 0.41 ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25 Consensus pattern (80 bp): CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGACCTTACCCGGA TATAGTAACTTAGCA Found at i:64486262 original size:40 final size:39 Alignment explanation
Indices: 64486071--64486262 Score: 156 Period size: 40 Copynumber: 4.8 Consensus size: 39 64486061 GGATATAACG * ** * * 64486071 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG 1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA * * * * 64486111 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA 1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA * * * 64486151 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA 1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA * * * 64486190 ACTCGCACGAATGCCTTC-GGATCCTT-GTCCGGATATAGTC 1 ACTCGCAC-AAAGCCTTCGGGA--CTTAGCCCGGATATAGTA * 64486230 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA 1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA 64486263 CATCATTCGA Statistics Matches: 121, Mismatches: 22, Indels: 18 0.75 0.14 0.11 Matches are distributed among these distances: 38 2 0.02 39 33 0.27 40 73 0.60 41 13 0.11 ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25 Consensus pattern (39 bp): ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA Found at i:64489680 original size:14 final size:14 Alignment explanation
Indices: 64489661--64489689 Score: 58 Period size: 14 Copynumber: 2.1 Consensus size: 14 64489651 ACAGATGGAT 64489661 TCGTATAATTCTTA 1 TCGTATAATTCTTA 64489675 TCGTATAATTCTTA 1 TCGTATAATTCTTA 64489689 T 1 T 64489690 ATATATTGTA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 15 1.00 ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52 Consensus pattern (14 bp): TCGTATAATTCTTA Found at i:64491718 original size:591 final size:591 Alignment explanation
Indices: 64490597--64491779 Score: 2339 Period size: 591 Copynumber: 2.0 Consensus size: 591 64490587 CACCCATGAG 64490597 TAAATATTTCGTAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGG 1 TAAATATTTCGTAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGG 64490662 AGCATAAACTGAAACATTCAGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCGCATAAAAAC 66 AGCATAAACTGAAACATTCAGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCGCATAAAAAC 64490727 ATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTACTATAGCCATTTCTATACATTC 131 ATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTACTATAGCCATTTCTATACATTC 64490792 AATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTT 196 AATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTT 64490857 CGTTGAGATTGTTCGTTTGGAAATTTCCTGAAAAGCTAATCATAGGTTCTTCTCTCCATCGGAAC 261 CGTTGAGATTGTTCGTTTGGAAATTTCCTGAAAAGCTAATCATAGGTTCTTCTCTCCATCGGAAC 64490922 AATAAGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGACGAAATATAACCAAGGTATATCTTT 326 AATAAGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGACGAAATATAACCAAGGTATATCTTT 64490987 TTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGA 391 TTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGA 64491052 AAATAAAACTTCCATCAAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGA 456 AAATAAAACTTCCATCAAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGA 64491117 ATGAAGTTTTCATTCTATACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAAT 521 ATGAAGTTTTCATTCTATACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAAT 64491182 CCCAAT 586 CCCAAT 64491188 TAAATATTTCGTAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGG 1 TAAATATTTCGTAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGG 64491253 AGCATAAACTGAAACATTCAGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCGCATAAAAAC 66 AGCATAAACTGAAACATTCAGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCGCATAAAAAC 64491318 ATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTACTATAGCCATTTCTATACATTC 131 ATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTACTATAGCCATTTCTATACATTC 64491383 AATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTT 196 AATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTT 64491448 CGTTGAGATTGTTCGTTTGGAAATTTCCTGAAAAGCTAATCATAGGTTCTTCTCTCCATCGGAAC 261 CGTTGAGATTGTTCGTTTGGAAATTTCCTGAAAAGCTAATCATAGGTTCTTCTCTCCATCGGAAC * 64491513 AATAGGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGACGAAATATAACCAAGGTATATCTTT 326 AATAAGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGACGAAATATAACCAAGGTATATCTTT * * 64491578 TTTATTAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGA 391 TTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGA 64491643 AAATAAAACTTCCATCAAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGA 456 AAATAAAACTTCCATCAAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGA 64491708 ATGAAGTTTTCATTCTATACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAAT 521 ATGAAGTTTTCATTCTATACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAAT 64491773 CCCAAT 586 CCCAAT 64491779 T 1 T 64491780 GTTTAGAACT Statistics Matches: 589, Mismatches: 3, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 591 589 1.00 ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29 Consensus pattern (591 bp): TAAATATTTCGTAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGG AGCATAAACTGAAACATTCAGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCGCATAAAAAC ATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTACTATAGCCATTTCTATACATTC AATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTT CGTTGAGATTGTTCGTTTGGAAATTTCCTGAAAAGCTAATCATAGGTTCTTCTCTCCATCGGAAC AATAAGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGACGAAATATAACCAAGGTATATCTTT TTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGA AAATAAAACTTCCATCAAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGA ATGAAGTTTTCATTCTATACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAAT CCCAAT Found at i:64493188 original size:26 final size:25 Alignment explanation
Indices: 64493145--64493201 Score: 71 Period size: 25 Copynumber: 2.3 Consensus size: 25 64493135 CCACTCTTTC * * 64493145 GAGCT-ATGAACAGTAAGCTCCTCTT 1 GAGCTGATGAACAATAAGCT-CTATT * 64493170 GAGCTGATGGACAATAAGCTCTATT 1 GAGCTGATGAACAATAAGCTCTATT 64493195 GAGCTGA 1 GAGCTGA 64493202 AACGGTAAGC Statistics Matches: 28, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 25 16 0.57 26 12 0.43 ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26 Consensus pattern (25 bp): GAGCTGATGAACAATAAGCTCTATT Found at i:64493232 original size:23 final size:23 Alignment explanation
Indices: 64493184--64493296 Score: 86 Period size: 23 Copynumber: 4.7 Consensus size: 23 64493174 TGATGGACAA * ** 64493184 TAAGCTCTATTGAGCTGA-AACGG 1 TAAGCTCTA-CGAGCTGAGAATAG * * 64493207 TAAGCTCTGACAAGCTGA-ATTAG 1 TAAGCTCT-ACGAGCTGAGAATAG 64493230 TAAGCTCATACGAGCTGAGAATAG 1 TAAGCTC-TACGAGCTGAGAATAG * * 64493254 TAAGCTCTCACGAGCTGATATATGGG 1 TAAGCTCT-ACGAGCTGAGA-AT-AG 64493280 TAAGCTCATACGAGCTG 1 TAAGCTC-TACGAGCTG 64493297 TGGTGAGTCC Statistics Matches: 74, Mismatches: 9, Indels: 11 0.79 0.10 0.12 Matches are distributed among these distances: 23 32 0.43 24 23 0.31 25 2 0.03 26 16 0.22 27 1 0.01 ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25 Consensus pattern (23 bp): TAAGCTCTACGAGCTGAGAATAG Found at i:64493282 original size:26 final size:24 Alignment explanation
Indices: 64493206--64493296 Score: 91 Period size: 24 Copynumber: 3.8 Consensus size: 24 64493196 AGCTGAAACG * 64493206 GTAAGCTC-TGACAAGCTGAAT-TA 1 GTAAGCTCAT-ACGAGCTGAATATA 64493229 GTAAGCTCATACGAGCTGAGA-ATA 1 GTAAGCTCATACGAGCTGA-ATATA * 64493253 GTAAGCTC-TCACGAGCTGATATATGG 1 GTAAGCTCAT-ACGAGCTGA-ATAT-A 64493279 GTAAGCTCATACGAGCTG 1 GTAAGCTCATACGAGCTG 64493297 TGGTGAGTCC Statistics Matches: 58, Mismatches: 3, Indels: 11 0.81 0.04 0.15 Matches are distributed among these distances: 23 17 0.29 24 22 0.38 25 2 0.03 26 16 0.28 27 1 0.02 ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24 Consensus pattern (24 bp): GTAAGCTCATACGAGCTGAATATA Found at i:64495869 original size:34 final size:34 Alignment explanation
Indices: 64495843--64495918 Score: 100 Period size: 34 Copynumber: 2.2 Consensus size: 34 64495833 ATAACAGTCT 64495843 AGTAACAGT-TAGGGCCTTAGCCCAATACAGTATC 1 AGTAACAGTGTA-GGCCTTAGCCCAATACAGTATC * * * * 64495877 AGTAGCAGTGTAGGCTTTAGCCCATTACAGTAAC 1 AGTAACAGTGTAGGCCTTAGCCCAATACAGTATC 64495911 AGTAACAG 1 AGTAACAG 64495919 AAATGCAATC Statistics Matches: 36, Mismatches: 5, Indels: 2 0.84 0.12 0.05 Matches are distributed among these distances: 34 34 0.94 35 2 0.06 ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24 Consensus pattern (34 bp): AGTAACAGTGTAGGCCTTAGCCCAATACAGTATC Found at i:64496369 original size:18 final size:18 Alignment explanation
Indices: 64496341--64496375 Score: 54 Period size: 18 Copynumber: 1.9 Consensus size: 18 64496331 AAAGTTCATA 64496341 ACACGGCCCATGTAGGCCC 1 ACACGGCCCATGT-GGCCC 64496360 ACAC-GCCCATGTGGCC 1 ACACGGCCCATGTGGCC 64496376 TACAAAGCCC Statistics Matches: 16, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 17 4 0.25 18 8 0.50 19 4 0.25 ACGTcount: A:0.20, C:0.43, G:0.26, T:0.11 Consensus pattern (18 bp): ACACGGCCCATGTGGCCC Found at i:64504347 original size:43 final size:43 Alignment explanation
Indices: 64504263--64504348 Score: 106 Period size: 43 Copynumber: 2.0 Consensus size: 43 64504253 TATGTGATTC * * 64504263 CGATATGTGTTTACGAGTAAGACCCTGTCTGGGACAGTGGCAT 1 CGATATGTGGTTACGAGTAAGACCCTGTCTAGGACAGTGGCAT 64504306 CGATATGTGGTTAC-ATGTAAGACCAC-GTCTAGGAC-GTTGGCAT 1 CGATATGTGGTTACGA-GTAAGACC-CTGTCTAGGACAG-TGGCAT 64504349 TGTACCATTT Statistics Matches: 38, Mismatches: 2, Indels: 6 0.83 0.04 0.13 Matches are distributed among these distances: 42 2 0.05 43 35 0.92 44 1 0.03 ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28 Consensus pattern (43 bp): CGATATGTGGTTACGAGTAAGACCCTGTCTAGGACAGTGGCAT Found at i:64511346 original size:6 final size:6 Alignment explanation
Indices: 64511325--64511373 Score: 71 Period size: 6 Copynumber: 8.0 Consensus size: 6 64511315 AAATTTGTTT * * 64511325 ATAAAA ACATAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAG ATAAAA 1 ATAAAA ATA-AAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA 64511374 TGAAATTAAA Statistics Matches: 38, Mismatches: 4, Indels: 2 0.86 0.09 0.05 Matches are distributed among these distances: 6 33 0.87 7 5 0.13 ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16 Consensus pattern (6 bp): ATAAAA Found at i:64521191 original size:18 final size:18 Alignment explanation
Indices: 64521142--64521181 Score: 80 Period size: 18 Copynumber: 2.2 Consensus size: 18 64521132 ATCAGGCAAG 64521142 TTTCACATACATGTATTT 1 TTTCACATACATGTATTT 64521160 TTTCACATACATGTATTT 1 TTTCACATACATGTATTT 64521178 TTTC 1 TTTC 64521182 CATGTCATGT Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 18 22 1.00 ACGTcount: A:0.25, C:0.17, G:0.05, T:0.53 Consensus pattern (18 bp): TTTCACATACATGTATTT Found at i:64533369 original size:41 final size:41 Alignment explanation
Indices: 64533312--64533394 Score: 139 Period size: 41 Copynumber: 2.0 Consensus size: 41 64533302 GAGTAAGGCA * 64533312 AGTTGTCGAATAAGACCATAGCCGGGCTGTGGCAATCGAAT 1 AGTTGTCGAATAAGACCAAAGCCGGGCTGTGGCAATCGAAT * * 64533353 AGTTGTCGAATAAGACCAAAGTCGGGTTGTGGCAATCGAAT 1 AGTTGTCGAATAAGACCAAAGCCGGGCTGTGGCAATCGAAT 64533394 A 1 A 64533395 ATAAGGCCAT Statistics Matches: 39, Mismatches: 3, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 41 39 1.00 ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23 Consensus pattern (41 bp): AGTTGTCGAATAAGACCAAAGCCGGGCTGTGGCAATCGAAT Found at i:64534147 original size:24 final size:23 Alignment explanation
Indices: 64534120--64534164 Score: 56 Period size: 23 Copynumber: 1.9 Consensus size: 23 64534110 TAAAGTAAGA 64534120 TAAATTGAT-TGGTATTTGAGTAGG 1 TAAA-TGATATGG-ATTTGAGTAGG * 64534144 TAAATGGTATGGATTTGAGTA 1 TAAATGATATGGATTTGAGTA 64534165 ATGAAATTTA Statistics Matches: 19, Mismatches: 1, Indels: 3 0.83 0.04 0.13 Matches are distributed among these distances: 23 12 0.63 24 7 0.37 ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40 Consensus pattern (23 bp): TAAATGATATGGATTTGAGTAGG Found at i:64535881 original size:47 final size:45 Alignment explanation
Indices: 64535677--64535992 Score: 271 Period size: 49 Copynumber: 6.7 Consensus size: 45 64535667 ATATGTTGCT * * * * 64535677 GATGCCATGTCCCGGACATGGTCTTACACTGGCTATCATCATCGAGGCT 1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATC-T-TAGGCC * * * * 64535726 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTATACGTGCT 1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCT-TA-G-GCC * * * * 64535776 AATGCATGTCCCAGACATGTCTTACACTAGCAC-AACTCTTA-GCC 1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCA-TCTTAGGCC * 64535820 GATGCATGTCCCAGACACGTCTTACACTGGCTCTCATCGTTGAGGCC 1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATC-TT-AGGCC * * * 64535867 GATGCATGTGCCAGACATGTCTTACACTGG-TGCTCATTCTCTACGTC 1 GATGCATGTCCCAGACATGTCTTACACTGGCT-CTCA-TCT-TAGGCC * * 64535914 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATT-GTAGCC 1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTTAG--GCC 64535962 GATGCATGTCCCAGACATGTCTTACACTGGC 1 GATGCATGTCCCAGACATGTCTTACACTGGC 64535993 ACACAGGTAA Statistics Matches: 225, Mismatches: 27, Indels: 33 0.79 0.09 0.12 Matches are distributed among these distances: 44 33 0.15 45 3 0.01 46 15 0.07 47 60 0.27 48 42 0.19 49 65 0.29 50 7 0.03 ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28 Consensus pattern (45 bp): GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTTAGGCC Found at i:64535966 original size:95 final size:94 Alignment explanation
Indices: 64535726--64535991 Score: 294 Period size: 95 Copynumber: 2.8 Consensus size: 94 64535716 CATCGAGGCT * * * * ** 64535726 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTATACGT-GCTAATGCATGTCCCAG 1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC--ATAT-TGTAGCCGATGCATGTCCCAG 64535790 ACATGTCTTACACT--AGCACAACTCTTAGCC 63 ACATGTCTTACACTGGAGCACAACTCTTAGCC * * * 64535820 GATG-CATGTCCCAGACA-CGTCTTACACTGGCTCTCATCGTTG-AGGCCGATGCATGTGCCAGA 1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATTGTA-GCCGATGCATGTCCCAGA * * * * 64535882 CATGTCTTACACTGGTGCTC-ATTCTCTACGTC 64 CATGTCTTACACTGGAGCACAACTCT-TA-GCC * 64535914 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATTGTAGCCGATGCATGTCCCAGACA 1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTGTAGCCGATGCATGTCCCAGACA 64535979 TGTCTTACACTGG 66 TGTCTTACACTGG 64535992 CACACAGGTA Statistics Matches: 145, Mismatches: 17, Indels: 19 0.80 0.09 0.10 Matches are distributed among these distances: 90 2 0.01 91 29 0.20 92 19 0.13 93 18 0.12 94 10 0.07 95 48 0.33 96 19 0.13 ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29 Consensus pattern (94 bp): GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTGTAGCCGATGCATGTCCCAGACA TGTCTTACACTGGAGCACAACTCTTAGCC Found at i:64542909 original size:2 final size:2 Alignment explanation
Indices: 64542904--64542928 Score: 50 Period size: 2 Copynumber: 12.5 Consensus size: 2 64542894 CCATATAAAC 64542904 AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT A 64542929 CACATGATTC Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 23 1.00 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (2 bp): AT Found at i:64545019 original size:44 final size:44 Alignment explanation
Indices: 64544898--64545121 Score: 263 Period size: 44 Copynumber: 5.1 Consensus size: 44 64544888 AACGGGTTGT * * * 64544898 TACAAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGC 1 TACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGC * * * 64544942 TACAAATCTTA-CTCCCTGAAGTTGTAGAT-GAGCAAATTAAAGC 1 TACAAATCTTATCTCCCTGAAGTTGCA-ATGGAGCAGATTGAAGC * * 64544985 TACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTAAAGC 1 TACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGC * * * * 64545029 TACAAATCTCATCTCCTTGAAGCTGCAATGGAGCATATTGAAGC 1 TACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGC ** * * * * 64545073 TATGAACCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC 1 TACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGC 64545117 TACAA 1 TACAA 64545122 TTTCTATACC Statistics Matches: 152, Mismatches: 25, Indels: 6 0.83 0.14 0.03 Matches are distributed among these distances: 43 37 0.24 44 115 0.76 ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27 Consensus pattern (44 bp): TACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGC Found at i:64548113 original size:20 final size:20 Alignment explanation
Indices: 64548066--64548113 Score: 78 Period size: 20 Copynumber: 2.4 Consensus size: 20 64548056 AGATAGGGGC * 64548066 ACATGCCCGTGTGGCCTGGG 1 ACATGCCCGTGTGGCCTGGA * 64548086 ACACGCCCGTGTGGCCTGGA 1 ACATGCCCGTGTGGCCTGGA 64548106 ACATGCCC 1 ACATGCCC 64548114 ATGGGCAGAT Statistics Matches: 25, Mismatches: 3, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 20 25 1.00 ACGTcount: A:0.15, C:0.35, G:0.33, T:0.17 Consensus pattern (20 bp): ACATGCCCGTGTGGCCTGGA Found at i:64548613 original size:13 final size:13 Alignment explanation
Indices: 64548595--64548631 Score: 56 Period size: 13 Copynumber: 2.8 Consensus size: 13 64548585 AGATAATTAG 64548595 CAAATCATACATA 1 CAAATCATACATA 64548608 CAAATCATACATA 1 CAAATCATACATA * 64548621 TAAATTCATAC 1 CAAA-TCATAC 64548632 CAAACTGTCA Statistics Matches: 22, Mismatches: 1, Indels: 1 0.92 0.04 0.04 Matches are distributed among these distances: 13 16 0.73 14 6 0.27 ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27 Consensus pattern (13 bp): CAAATCATACATA Found at i:64548787 original size:48 final size:48 Alignment explanation
Indices: 64548728--64548883 Score: 179 Period size: 48 Copynumber: 3.1 Consensus size: 48 64548718 TTCATCTCTC * 64548728 AACCACGTATAATTATTCAATTCACATTTCAAATATAAACACTTCATA 1 AACCACATATAATTATTCAATTCACATTTCAAATATAAACACTTCATA * * * 64548776 AACCACATATAATTATTCAATTCATATTTCAAATATGAAC-CTTTGATTCATCTCTC 1 AACCACATATAATTATTCAATTCACATTTCAAATATAAACAC-----TTCA----TA * 64548832 AACCACATATAATTATTCACTTCACATTTCAAATATAAACACTTCATA 1 AACCACATATAATTATTCAATTCACATTTCAAATATAAACACTTCATA 64548880 AACC 1 AACC 64548884 TTTGGTTCAT Statistics Matches: 90, Mismatches: 8, Indels: 20 0.76 0.07 0.17 Matches are distributed among these distances: 47 1 0.01 48 42 0.47 52 8 0.09 56 38 0.42 57 1 0.01 ACGTcount: A:0.41, C:0.22, G:0.02, T:0.35 Consensus pattern (48 bp): AACCACATATAATTATTCAATTCACATTTCAAATATAAACACTTCATA Found at i:64550132 original size:19 final size:18 Alignment explanation
Indices: 64550099--64550146 Score: 53 Period size: 19 Copynumber: 2.6 Consensus size: 18 64550089 ATTTTCCCTT * * 64550099 TTTCTTTTTCTTTTCTTC- 1 TTTCTTTCTCTTTTC-ACG 64550117 TTTCTTTCTCTCTTTCACG 1 TTTCTTTCTCT-TTTCACG 64550136 TTTCTTTCTCT 1 TTTCTTTCTCT 64550147 GTAACTTTCT Statistics Matches: 26, Mismatches: 2, Indels: 3 0.84 0.06 0.10 Matches are distributed among these distances: 18 11 0.42 19 15 0.58 ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69 Consensus pattern (18 bp): TTTCTTTCTCTTTTCACG Found at i:64550350 original size:3 final size:3 Alignment explanation
Indices: 64550329--64550387 Score: 95 Period size: 3 Copynumber: 20.0 Consensus size: 3 64550319 TTATCTCCAT 64550329 TAA TAGA TAA -AA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA 1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA 64550373 TAA TAA TAA TAA TAA 1 TAA TAA TAA TAA TAA 64550388 ATAAATAAAT Statistics Matches: 53, Mismatches: 0, Indels: 6 0.90 0.00 0.10 Matches are distributed among these distances: 2 4 0.08 3 46 0.87 4 3 0.06 ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32 Consensus pattern (3 bp): TAA Found at i:64550429 original size:4 final size:4 Alignment explanation
Indices: 64550383--64550410 Score: 56 Period size: 4 Copynumber: 7.0 Consensus size: 4 64550373 TAATAATAAT 64550383 AATA AATA AATA AATA AATA AATA AATA 1 AATA AATA AATA AATA AATA AATA AATA 64550411 TCTTTAACTT Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 24 1.00 ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25 Consensus pattern (4 bp): AATA Found at i:64551560 original size:19 final size:19 Alignment explanation
Indices: 64551538--64551580 Score: 59 Period size: 19 Copynumber: 2.3 Consensus size: 19 64551528 TTTTTTTTTA * 64551538 TTTTTTTTAACTTTTGTCT 1 TTTTTTTTAAATTTTGTCT * * 64551557 TTTTCTTTAAATTTTTTCT 1 TTTTTTTTAAATTTTGTCT 64551576 TTTTT 1 TTTTT 64551581 AAGTTTTATA Statistics Matches: 20, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 19 20 1.00 ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77 Consensus pattern (19 bp): TTTTTTTTAAATTTTGTCT Found at i:64551618 original size:13 final size:13 Alignment explanation
Indices: 64551602--64551644 Score: 50 Period size: 13 Copynumber: 3.2 Consensus size: 13 64551592 TTTTTCTTAT * 64551602 TTTATTTTGTTTA 1 TTTATTTTATTTA 64551615 TTTATTTTATTTA 1 TTTATTTTATTTA * * 64551628 TTTTTTGTTATTAA 1 TTTATT-TTATTTA 64551642 TTT 1 TTT 64551645 TAAAAAATTT Statistics Matches: 26, Mismatches: 3, Indels: 1 0.87 0.10 0.03 Matches are distributed among these distances: 13 17 0.65 14 9 0.35 ACGTcount: A:0.19, C:0.00, G:0.05, T:0.77 Consensus pattern (13 bp): TTTATTTTATTTA Found at i:64551639 original size:10 final size:9 Alignment explanation
Indices: 64551598--64551631 Score: 52 Period size: 9 Copynumber: 3.8 Consensus size: 9 64551588 ATATTTTTTC 64551598 TTATTTTAT 1 TTATTTTAT 64551607 TT-TGTTTAT 1 TTAT-TTTAT 64551616 TTATTTTAT 1 TTATTTTAT 64551625 TTATTTT 1 TTATTTT 64551632 TTGTTATTAA Statistics Matches: 23, Mismatches: 0, Indels: 4 0.85 0.00 0.15 Matches are distributed among these distances: 8 1 0.04 9 21 0.91 10 1 0.04 ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79 Consensus pattern (9 bp): TTATTTTAT Found at i:64551706 original size:23 final size:23 Alignment explanation
Indices: 64551648--64551714 Score: 68 Period size: 22 Copynumber: 3.0 Consensus size: 23 64551638 TTAATTTTAA * * 64551648 AAAATTTGAAATGTATA--TTTG 1 AAAATTTTAAATATATATTTTTG * 64551669 AAATATTTTATAATATATATTTTTT 1 AAA-ATTTTA-AATATATATTTTTG 64551694 AAAATTTTAAATAT-TATTTTT 1 AAAATTTTAAATATATATTTTT 64551715 AAATTATTTT Statistics Matches: 39, Mismatches: 3, Indels: 7 0.80 0.06 0.14 Matches are distributed among these distances: 21 3 0.08 22 12 0.31 23 12 0.31 24 6 0.15 25 6 0.15 ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54 Consensus pattern (23 bp): AAAATTTTAAATATATATTTTTG Found at i:64551707 original size:33 final size:32 Alignment explanation
Indices: 64551664--64551817 Score: 139 Period size: 36 Copynumber: 4.5 Consensus size: 32 64551654 TGAAATGTAT * 64551664 ATTTGAAATAT-TTTATAATATATATTTTTTAAA 1 ATTTTAAATATATTTATAA-AT-TATTTTTTAAA * 64551697 ATTTTAAATATTATTTTTAAATTATTTTTTAAA 1 ATTTTAAATA-TATTTATAAATTATTTTTTAAA * * 64551730 ATTTTAAATATATATTTTTGAAATTATTTCTTATAA 1 ATTTT-AA-ATATATTTAT-AAATTATTTTTTA-AA * * 64551766 ATTTTAAAAATATATTTTTGAAATTAATTTTTATAA 1 ATTTT--AAATATATTTAT-AAATTATTTTTTA-AA 64551802 ATTTTAAATAATATTT 1 ATTTTAAAT-ATATTT 64551818 TTTAAATATT Statistics Matches: 108, Mismatches: 5, Indels: 14 0.85 0.04 0.11 Matches are distributed among these distances: 33 25 0.23 34 16 0.15 35 27 0.25 36 37 0.34 37 3 0.03 ACGTcount: A:0.42, C:0.01, G:0.02, T:0.56 Consensus pattern (32 bp): ATTTTAAATATATTTATAAATTATTTTTTAAA Done.