Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 219 of 292
Found at i:64329723 original size:27 final size:26
Alignment explanation
Indices: 64329670--64329760 Score: 128
Period size: 27 Copynumber: 3.4 Consensus size: 26
64329660 ATTACCAAAG
* *
64329670 TACCCTCGATTTATAAATTACTATTT
1 TACCCTCGATTTACAAATTACTGTTT
*
64329696 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACA-AATTACTGTTT
*
64329723 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTAC-AAATTACTGTTT
64329750 TACCCTCGATT
1 TACCCTCGATT
64329761 GTGAAATTAC
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
26 13 0.22
27 44 0.76
28 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (26 bp):
TACCCTCGATTTACAAATTACTGTTT
Found at i:64329780 original size:53 final size:52
Alignment explanation
Indices: 64329645--64329780 Score: 132
Period size: 53 Copynumber: 2.6 Consensus size: 52
64329635 TACAGAAATG
* * *
64329645 CCCTCGACTTGTAAAATTAC-CAAAGTACCCTCGATTTATAAATTACTATTTTA
1 CCCTCGA-TTGTAAAATTACTGAAA-TACCCTCGATTTAAAAATTACCATTTTA
* *** *
64329698 CCCTTGATT-TACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTGTA-A-AATTACTGAAATACCCTCGATTTA-AAAATTACCATTTTA
*
64329752 CCCTCGATTGTGAAATTACTGAAATACCC
1 CCCTCGATTGTAAAATTACTGAAATACCC
64329781 ATATAGGGTA
Statistics
Matches: 65, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
51 2 0.03
52 3 0.05
53 38 0.58
54 21 0.32
55 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.36
Consensus pattern (52 bp):
CCCTCGATTGTAAAATTACTGAAATACCCTCGATTTAAAAATTACCATTTTA
Found at i:64329822 original size:27 final size:27
Alignment explanation
Indices: 64329792--64329890 Score: 119
Period size: 27 Copynumber: 3.7 Consensus size: 27
64329782 TATAGGGTAG
64329792 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
64329819 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
** *
64329846 AATTACCGGAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
*
64329873 AATTACCAAAATGCCCCT
1 AATTACCAAAATACCCCT
64329891 GATTTACAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
26 3 0.05
27 51 0.88
28 4 0.07
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:64329966 original size:27 final size:27
Alignment explanation
Indices: 64329893--64329978 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
64329883 ATGCCCCTGA
*
64329893 TTTACAAAATT-TTAGAAATACCCTTGAC
1 TTTACAAAATTATT-GAAATACCCTTG-G
* *
64329921 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTATTGAAATACCCTTGG
64329949 TTTACAAAATTATTGAAATACCCTTGG
1 TTTACAAAATTATTGAAATACCCTTGG
64329976 TTT
1 TTT
64329979 GTAGATTTAC
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
27 24 0.49
28 6 0.12
29 18 0.37
30 1 0.02
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.38
Consensus pattern (27 bp):
TTTACAAAATTATTGAAATACCCTTGG
Found at i:64330946 original size:25 final size:25
Alignment explanation
Indices: 64330907--64331025 Score: 186
Period size: 25 Copynumber: 4.8 Consensus size: 25
64330897 GGAAGTGCTA
* * *
64330907 AAAGGGCTCTACCCCAGTTTA-CCG
1 AAAGGGCTTTGCCCCAGTTTATCAG
64330931 AAAAGGGCTTTGCCCCAGTTTATCAG
1 -AAAGGGCTTTGCCCCAGTTTATCAG
64330957 AAAGGGCTTTGCCCCAGTTTATCAG
1 AAAGGGCTTTGCCCCAGTTTATCAG
64330982 AAAGGGCTTTGCCCCAGTTTATCAG
1 AAAGGGCTTTGCCCCAGTTTATCAG
*
64331007 AAAGGGTTTTGCCCCAGTT
1 AAAGGGCTTTGCCCCAGTT
64331026 ATTAAAAGAG
Statistics
Matches: 89, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 87 0.98
26 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTTATCAG
Found at i:64331049 original size:50 final size:50
Alignment explanation
Indices: 64330907--64331050 Score: 141
Period size: 50 Copynumber: 2.9 Consensus size: 50
64330897 GGAAGTGCTA
* * * * **
64330907 AAAGGGCTCTACCCCAGTTTA-CCGAAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAGGGCTTTGCCCCAGTTTATCAG-AAAGGACTAGGCCCCAGTTTATCAG
* **
64330957 AAAGGGCTTTGCCCCAGTTTATCAGAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAGGGCTTTGCCCCAGTTTATCAGAAAGGACTAGGCCCCAGTTTATCAG
* *
64331007 AAAGGGTTTTGCCCCAG-TTATTA-AAAGAGACTAGGCCTCCAGTT
1 AAAGGGCTTTGCCCCAGTTTATCAGAAAG-GACTAGGCC-CCAGTT
64331051 ATATGATAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
48 4 0.05
49 11 0.13
50 66 0.80
51 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (50 bp):
AAAGGGCTTTGCCCCAGTTTATCAGAAAGGACTAGGCCCCAGTTTATCAG
Found at i:64331049 original size:75 final size:75
Alignment explanation
Indices: 64330907--64331050 Score: 168
Period size: 75 Copynumber: 1.9 Consensus size: 75
64330897 GGAAGTGCTA
* * **
64330907 AAAGGGCTCTACCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCAGAAAGGGCTTTGCCCC
1 AAAGGGCTCTACCCCAGTTTACAGAAAAGGGCTTTGCCCCAGTTTATCAGAAAGGACTAGGCCCC
64330972 AGTTTATCAG
66 AGTTTATCAG
* * * *
64330982 AAAGGGCTTTGCCCCAGTTTATCAG-AAAGGGTTTTGCCCCAG-TTATTA-AAAGAGACTAGGCC
1 AAAGGGCTCTACCCCAGTTTA-CAGAAAAGGGCTTTGCCCCAGTTTATCAGAAAG-GACTAGGCC
64331044 TCCAGTT
64 -CCAGTT
64331051 ATATGATAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
73 4 0.07
74 11 0.19
75 41 0.71
76 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (75 bp):
AAAGGGCTCTACCCCAGTTTACAGAAAAGGGCTTTGCCCCAGTTTATCAGAAAGGACTAGGCCCC
AGTTTATCAG
Found at i:64331232 original size:42 final size:42
Alignment explanation
Indices: 64331173--64331266 Score: 179
Period size: 42 Copynumber: 2.2 Consensus size: 42
64331163 TAGTCTCCCC
*
64331173 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
64331215 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
64331257 AAATGGGCTT
1 AAATGGGCTT
64331267 AAGGGCTATA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:64331323 original size:31 final size:31
Alignment explanation
Indices: 64331288--64331371 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
64331278 CGTTTATAGT
64331288 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
64331319 AAAGGCTTCGGCCCTGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
64331350 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
64331372 TCAAGACTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:64337847 original size:16 final size:16
Alignment explanation
Indices: 64337810--64337848 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
64337800 TGTCGAGAAA
*
64337810 CCATTAATATCGCAGG
1 CCATTAATATCGCAAG
*
64337826 CCATTAATATTGCAAG
1 CCATTAATATCGCAAG
*
64337842 CTATTAA
1 CCATTAA
64337849 AATTTTAGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.31
Consensus pattern (16 bp):
CCATTAATATCGCAAG
Found at i:64338761 original size:12 final size:12
Alignment explanation
Indices: 64338744--64338769 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64338734 AAAACAGATC
64338744 TTTAGCGGCGTT
1 TTTAGCGGCGTT
64338756 TTTAGCGGCGTT
1 TTTAGCGGCGTT
64338768 TT
1 TT
64338770 CTCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:64338898 original size:41 final size:41
Alignment explanation
Indices: 64338793--64339208 Score: 588
Period size: 41 Copynumber: 10.1 Consensus size: 41
64338783 AAAAAAATTG
* * *
64338793 TAAAACAT-AGAGCAATAGCAGCGTTTTTGGTAAAACGCCGC
1 TAAAA-ATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* * *
64338834 TAAAAA-CAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGC
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
64338874 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCAC
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
64338915 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* *
64338956 TAAAAATAAGATCATTAGCGGTGCTTTTGGTAAAACGCCGC
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* *
64338997 TAAAAAT-CGAAGCATTAGCGGCACTTTTGGTAAAACGCCGC
1 TAAAAATAAG-AGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* * *
64339038 TAAAAA-ATCGAAGCAATAGCGGCGCTTTTGGTAAAACGCAGC
1 TAAAAATA-AG-AGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
64339080 TAAAAATAAGATCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* * * *
64339121 TAAAAATCAGGGCAATAGCGGCGGTTTTGGTAAAACGCCGC
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
64339162 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCTGC
1 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
64339203 TAAAAA
1 TAAAAA
64339209 GTTTAGGGTT
Statistics
Matches: 340, Mismatches: 29, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
40 40 0.12
41 261 0.77
42 38 0.11
43 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (41 bp):
TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:64339087 original size:165 final size:165
Alignment explanation
Indices: 64338793--64339208 Score: 610
Period size: 165 Copynumber: 2.5 Consensus size: 165
64338783 AAAAAAATTG
* * * *
64338793 TAAAACAT-AGAGCAATAGCAGCGTTTTTGGTAAAACGCCGCTAAAAA-CAGAGCAATAGCAGCG
1 TAAAA-ATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCAGAGCATTAGCGGCG
*
64338856 CTTTTGGTAAAACGCCGCT-AAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCACTAAAA
65 CTTTTGGTAAAACGCCGCTAAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCACTAAAA
64338920 ATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
130 ATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* * * *
64338956 TAAAAATAAGATCATTAGCGGTGCTTTTGGTAAAACGCCGCTAAAAATC-GAAGCATTAGCGGCA
1 TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCAG-AGCATTAGCGGCG
*
64339020 CTTTTGGTAAAACGCCGCTAAAAAAT-CGAAGCAATAGCGGCGCTTTTGGTAAAACG-CAGCTAA
65 CTTTTGGTAAAACGCCGCTAAAAAATAAG-AGCAATAGCGGCGCTTTTGGTAAAACGCCA-CTAA
*
64339083 AAATAAGATCATTAGCGGCGCTTTTGGTAAAACGCCGC
128 AAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* * * *
64339121 TAAAAATCAGGGCAATAGCGGCGGTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGC
1 TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCAGAGCATTAGCGGCGC
*
64339186 TTTTGGTAAAACGCTGCTAAAAA
66 TTTTGGTAAAACGCCGCTAAAAA
64339209 GTTTAGGGTT
Statistics
Matches: 226, Mismatches: 20, Indels: 12
0.88 0.08 0.05
Matches are distributed among these distances:
162 2 0.01
163 40 0.18
164 33 0.15
165 150 0.66
166 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (165 bp):
TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCAGAGCATTAGCGGCGC
TTTTGGTAAAACGCCGCTAAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCACTAAAAA
TAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:64339306 original size:21 final size:22
Alignment explanation
Indices: 64339282--64339325 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
64339272 GGTTTATGTA
*
64339282 TTATGGTTTAAGGGTT-GGGGT
1 TTATGATTTAAGGGTTAGGGGT
64339303 TTATGATTTAAGGGTTAGGGGT
1 TTATGATTTAAGGGTTAGGGGT
64339325 T
1 T
64339326 AGGGTTAGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.18, C:0.00, G:0.39, T:0.43
Consensus pattern (22 bp):
TTATGATTTAAGGGTTAGGGGT
Found at i:64339324 original size:7 final size:7
Alignment explanation
Indices: 64339314--64339353 Score: 73
Period size: 7 Copynumber: 5.9 Consensus size: 7
64339304 TATGATTTAA
64339314 GGGTTAG
1 GGGTTAG
64339321 GGGTTA-
1 GGGTTAG
64339327 GGGTTAG
1 GGGTTAG
64339334 GGGTTAG
1 GGGTTAG
64339341 GGGTTAG
1 GGGTTAG
64339348 GGGTTA
1 GGGTTA
64339354 ATACTTAGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.15, C:0.00, G:0.55, T:0.30
Consensus pattern (7 bp):
GGGTTAG
Found at i:64339331 original size:13 final size:13
Alignment explanation
Indices: 64339313--64339353 Score: 73
Period size: 13 Copynumber: 3.1 Consensus size: 13
64339303 TTATGATTTA
64339313 AGGGTTAGGGGTT
1 AGGGTTAGGGGTT
64339326 AGGGTTAGGGGTT
1 AGGGTTAGGGGTT
64339339 AGGGGTTAGGGGTT
1 A-GGGTTAGGGGTT
64339353 A
1 A
64339354 ATACTTAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 14 0.52
14 13 0.48
ACGTcount: A:0.17, C:0.00, G:0.54, T:0.29
Consensus pattern (13 bp):
AGGGTTAGGGGTT
Found at i:64339601 original size:21 final size:21
Alignment explanation
Indices: 64339575--64339618 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
64339565 TTATGGTTAG
* *
64339575 GGGATATAGTTTAGGGTTTAA
1 GGGATATACTTTAGGGATTAA
64339596 GGGATATACTTTAGGGATTAA
1 GGGATATACTTTAGGGATTAA
64339617 GG
1 GG
64339619 TTATAGGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.02, G:0.34, T:0.34
Consensus pattern (21 bp):
GGGATATACTTTAGGGATTAA
Found at i:64343183 original size:183 final size:183
Alignment explanation
Indices: 64342875--64343243 Score: 693
Period size: 183 Copynumber: 2.0 Consensus size: 183
64342865 GATATAGTTC
* *
64342875 CATGTGTCTATATTAGTGAATTAATGTTGTATATGTTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGATTCCTGCTCCTCCTGCA
64342940 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
64343005 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
* *
64343058 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGATTCCTGCTCCTCCTGCA
64343123 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
64343188 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
64343241 CAT
1 CAT
64343244 CTGTTTTAGG
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 181 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (183 bp):
CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGATTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:64343464 original size:15 final size:15
Alignment explanation
Indices: 64343444--64343472 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64343434 GGAGTAGACC
64343444 AGGTACGTTTTATTG
1 AGGTACGTTTTATTG
64343459 AGGTACGTTTTATT
1 AGGTACGTTTTATT
64343473 TCAAAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.24, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTG
Found at i:64344225 original size:275 final size:274
Alignment explanation
Indices: 64343734--64344286 Score: 1061
Period size: 275 Copynumber: 2.0 Consensus size: 274
64343724 CCAACCTTAT
64343734 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
64343799 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGAATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
64343864 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
*
64343929 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATGA
196 AAAATTAAACTACGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
64343994 TGTTTGATTTTAATA
260 TGTTTGATTTTAATA
64344009 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
64344074 GCAAGATATAATGAATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTTAA
66 GCAAGATATAATGAATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
64344139 AAAGACTTGAAAATAGTTCTATTGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
64344204 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
196 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
64344269 GTTTGATTTTAATA
261 GTTTGATTTTAATA
64344283 TTTA
1 TTTA
64344287 CGATTCTTTT
Statistics
Matches: 274, Mismatches: 4, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
274 64 0.23
275 210 0.77
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.40
Consensus pattern (274 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGAATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
GTTTGATTTTAATA
Found at i:64344302 original size:72 final size:70
Alignment explanation
Indices: 64344214--64344376 Score: 274
Period size: 71 Copynumber: 2.3 Consensus size: 70
64344204 AAAATTAAAC
64344214 TACGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTT
1 TACGATTCTTTTTTTATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTGATTT
64344278 TAATATT
65 TAATA-T
64344285 TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTGATTTT
1 TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTGATTTT
**
64344350 TTTAT
66 AATAT
64344355 TACGATTCTTTTTTTTATATTA
1 TACGATTC-TTTTTTTATATTA
64344377 ATATGTACTT
Statistics
Matches: 88, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
70 9 0.10
71 50 0.57
72 29 0.33
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (70 bp):
TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTGATTTT
AATAT
Found at i:64344522 original size:15 final size:15
Alignment explanation
Indices: 64344504--64344533 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
64344494 ATAATTTTTA
64344504 TAAATATTATTTAAT
1 TAAATATTATTTAAT
64344519 TAAATATTATTTAAT
1 TAAATATTATTTAAT
64344534 CCCGCTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TAAATATTATTTAAT
Found at i:64344678 original size:9 final size:9
Alignment explanation
Indices: 64344638--64344931 Score: 114
Period size: 9 Copynumber: 31.6 Consensus size: 9
64344628 TATTTGATAT
*
64344638 CATAATTTA
1 CATAACTTA
*
64344647 TATAACTTA
1 CATAACTTA
* *
64344656 CAAAACATA
1 CATAACTTA
64344665 CATAACTTA
1 CATAACTTA
*
64344674 TATAACTTA
1 CATAACTTA
* *
64344683 GATAA-ATA
1 CATAACTTA
*
64344691 TATAACTTA
1 CATAACTTA
64344700 CATAACTTA
1 CATAACTTA
64344709 CATAATACTTA
1 CAT-A-ACTTA
* *
64344720 AATATATTTTATA
1 CATA-A--CT-TA
*
64344733 TCATAATTTA
1 -CATAACTTA
64344743 CATAACTTA
1 CATAACTTA
64344752 CATAACTTA
1 CATAACTTA
*
64344761 TATAACTTA
1 CATAACTTA
* *
64344770 GATAA-ATA
1 CATAACTTA
* *
64344778 TATAATTTA
1 CATAACTTA
*
64344787 CATAA-ATA
1 CATAACTTA
* * *
64344795 TATATCATA
1 CATAACTTA
64344804 TCATAACTTA
1 -CATAACTTA
64344814 CATAACTTA
1 CATAACTTA
64344823 CATAATACTTA
1 CAT-A-ACTTA
* *
64344834 AATATATTTTATA
1 CATA-A--CT-TA
*
64344847 TCATAATTTA
1 -CATAACTTA
64344857 CATAACTTA
1 CATAACTTA
64344866 CATAACTT-
1 CATAACTTA
*
64344874 TATAACTTA
1 CATAACTTA
* *
64344883 GATAA-ATA
1 CATAACTTA
* *
64344891 TATAATTTA
1 CATAACTTA
*
64344900 CATAA-ATA
1 CATAACTTA
* * *
64344908 TATATCATA
1 CATAACTTA
64344917 TCATAACTTA
1 -CATAACTTA
64344927 CATAA
1 CATAA
64344932 TACTTAAATT
Statistics
Matches: 220, Mismatches: 45, Indels: 40
0.72 0.15 0.13
Matches are distributed among these distances:
8 35 0.16
9 129 0.59
10 24 0.11
11 18 0.08
12 2 0.01
13 6 0.03
14 6 0.03
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39
Consensus pattern (9 bp):
CATAACTTA
Found at i:64344694 original size:17 final size:17
Alignment explanation
Indices: 64344672--64344911 Score: 108
Period size: 17 Copynumber: 13.4 Consensus size: 17
64344662 ATACATAACT
*
64344672 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
64344689 TATATAACTTACATAACT
1 TATATAACTTACATAA-A
* *
64344707 TACATAA--TACTTAAA
1 TATATAACTTACATAAA
** *
64344722 TATAT-TTTATATCATAATT
1 TATATAACT-TA-CATAA-A
* *
64344741 TACATAACTTACATAACT
1 TATATAACTTACATAA-A
*
64344759 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
64344776 TATATAATTTACATAAA
1 TATATAACTTACATAAA
* * *
64344793 TATATATCATATCATAACT
1 TATATAACTTA-CATAA-A
*
64344812 TACATAACTTACATAATA
1 TATATAACTTACATAA-A
** *
64344830 CTTAAATATATTTTATATCATAATT
1 --T--ATATA-ACT-TA-CATAA-A
* *
64344855 TACATAACTTACATAAC
1 TATATAACTTACATAAA
* *
64344872 TTTATAACTTAGATAAA
1 TATATAACTTACATAAA
*
64344889 TATATAATTTACATAAA
1 TATATAACTTACATAAA
64344906 TATATA
1 TATATA
64344912 TCATATCATA
Statistics
Matches: 165, Mismatches: 42, Indels: 32
0.69 0.18 0.13
Matches are distributed among these distances:
15 4 0.02
16 6 0.04
17 73 0.44
18 45 0.27
19 16 0.10
20 3 0.02
21 4 0.02
22 4 0.02
23 2 0.01
24 2 0.01
25 6 0.04
ACGTcount: A:0.47, C:0.11, G:0.01, T:0.40
Consensus pattern (17 bp):
TATATAACTTACATAAA
Found at i:64344809 original size:96 final size:96
Alignment explanation
Indices: 64344611--64344818 Score: 231
Period size: 96 Copynumber: 2.1 Consensus size: 96
64344601 ATAAAAAACT
* *
64344611 TACATAATACATAAATATATTTGATATCATAATTTATATAACTTACAAAACATACATAACTTATA
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACATACATAACTTAGA
* * * *
64344676 TAACTTAGATAAATATATAACTTACATAACT
66 TAACATAGATAAATACATAACATACATAACA
* * * * *
64344707 TACATAATACTTAAATATATTTTATATCATAATTTACATAACTTACATAACTTATATAACTTAGA
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACATACATAACTTAGA
* * * *
64344772 TAA-ATATATAATTTACATAA-ATATATATCA
66 TAACATAGATAA-ATACATAACATACATAACA
64344802 TATCATAACTTACATAA
1 TA-CATAA--TACATAA
64344819 CTTACATAAT
Statistics
Matches: 92, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
95 14 0.15
96 72 0.78
98 6 0.07
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.38
Consensus pattern (96 bp):
TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACATACATAACTTAGA
TAACATAGATAAATACATAACATACATAACA
Found at i:64344820 original size:114 final size:113
Alignment explanation
Indices: 64344688--64344931 Score: 472
Period size: 114 Copynumber: 2.2 Consensus size: 113
64344678 ACTTAGATAA
64344688 ATAT-ATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTA
1 ATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTA
64344752 CATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATC
66 CATAACTT-TATAACTTAGATAAATATATAATTTACATAAATATATATC
64344801 ATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTA
1 ATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTA
64344866 CATAACTTTATAACTTAGATAAATATATAATTTACATAAATATATATC
66 CATAACTTTATAACTTAGATAAATATATAATTTACATAAATATATATC
64344914 ATATCATAACTTACATAA
1 ATATCATAACTTACATAA
64344932 TACTTAAATT
Statistics
Matches: 130, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
113 62 0.48
114 68 0.52
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.40
Consensus pattern (113 bp):
ATATCATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTA
CATAACTTTATAACTTAGATAAATATATAATTTACATAAATATATATC
Found at i:64344839 original size:43 final size:43
Alignment explanation
Indices: 64344789--64344870 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
64344779 ATAATTTACA
64344789 TAAATATATATCATATCATAACTTACATAACTTACATAATACT
1 TAAATATATATCATATCATAACTTACATAACTTACATAATACT
* * *
64344832 TAAATATATTTTATATCATAATTTACATAACTTACATAA
1 TAAATATATATCATATCATAACTTACATAACTTACATAA
64344871 CTTTATAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.40
Consensus pattern (43 bp):
TAAATATATATCATATCATAACTTACATAACTTACATAATACT
Found at i:64350561 original size:15 final size:16
Alignment explanation
Indices: 64350536--64350566 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
64350526 GCAACAACTT
64350536 AGAGCGGAGGCAGCAG
1 AGAGCGGAGGCAGCAG
64350552 AGAG-GGAGGCAGCAG
1 AGAGCGGAGGCAGCAG
64350567 CTGCAGCGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.32, C:0.16, G:0.52, T:0.00
Consensus pattern (16 bp):
AGAGCGGAGGCAGCAG
Found at i:64350890 original size:30 final size:31
Alignment explanation
Indices: 64350845--64350910 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 31
64350835 TGGTTGTATT
*
64350845 TTTTATGTTAAATTTGCTGT-TTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
64350875 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
64350906 TTTTA
1 TTTTA
64350911 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.18, C:0.05, G:0.18, T:0.59
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:64351010 original size:43 final size:43
Alignment explanation
Indices: 64350989--64351119 Score: 217
Period size: 43 Copynumber: 3.0 Consensus size: 43
64350979 AAAAAGCGCT
*
64350989 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCCCAAACGCC
1 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC
64351032 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC
1 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC
* *
64351075 GCTAAAAGCCTTGACCTTTAGCGGCGTTTTTTCCCAATAAACGCC
1 GCTAAAAGCCTTGACCTTTAGCGGCG-CTTTTCCC-ACAAACGCC
64351120 ACAAATTTTT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
43 68 0.82
44 7 0.08
45 8 0.10
ACGTcount: A:0.23, C:0.34, G:0.18, T:0.25
Consensus pattern (43 bp):
GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC
Found at i:64356075 original size:258 final size:258
Alignment explanation
Indices: 64355612--64356100 Score: 888
Period size: 258 Copynumber: 1.9 Consensus size: 258
64355602 ATCATTTACA
* *
64355612 AGCCAACTCAAATGGCTAAATCTATTACTAACATATACGAAAATGACCATAACTCCTACACATGC
1 AGCCAACTCAAATGGCTAAATCCATTACTAACATATACCAAAATGACCATAACTCCTACACATGC
64355677 CATATAACAAAATACATAAGTTCAAAAGTACCAAAGTGATAGCTTCATAGTGTGATGAGGTCTCC
66 CATATAACAAAATACATAAGTTCAAAAGTACCAAAGTGATAGCTTCATAGTGTGATGAGGTCTCC
** *
64355742 GACGACTCCCAATCTAAGCTAGCTTTGATATTCACTGTAAAACACAAAAAAGTAAACAGAGTAAG
131 GACGACTCCCAATCTAAGCTAGCTTCAATATTAACTGTAAAACACAAAAAAGTAAACAGAGTAAG
*
64355807 CTATAAAGCTTAGTAAGCTCGTATAGTTAATAAGTCATTTTGGTATATGTTAGTAATGGATTT
196 CTACAAAGCTTAGTAAGCTCGTATAGTTAATAAGTCATTTTGGTATATGTTAGTAATGGATTT
*
64355870 AGCCAACTCAAATGGCTAAATCCATTACTAACATATACCAAAATGACCATAACTCCTATACATGC
1 AGCCAACTCAAATGGCTAAATCCATTACTAACATATACCAAAATGACCATAACTCCTACACATGC
64355935 CATATAACAAAATACATAAGTTCAAAAGTACCAAAGTGATAGCTTCATAGTGTGATGAGGTCTCC
66 CATATAACAAAATACATAAGTTCAAAAGTACCAAAGTGATAGCTTCATAGTGTGATGAGGTCTCC
* * *
64356000 GACGACTTCCAATCTGAGCTAGCTTCAATATTAACTGTAAAACACAAAAAAGTAAATAGAGTAAG
131 GACGACTCCCAATCTAAGCTAGCTTCAATATTAACTGTAAAACACAAAAAAGTAAACAGAGTAAG
64356065 CTACAAAGCTTAGTAAGCTCGTATAGTTAATAAGTC
196 CTACAAAGCTTAGTAAGCTCGTATAGTTAATAAGTC
64356101 TTACCATTCA
Statistics
Matches: 221, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
258 221 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27
Consensus pattern (258 bp):
AGCCAACTCAAATGGCTAAATCCATTACTAACATATACCAAAATGACCATAACTCCTACACATGC
CATATAACAAAATACATAAGTTCAAAAGTACCAAAGTGATAGCTTCATAGTGTGATGAGGTCTCC
GACGACTCCCAATCTAAGCTAGCTTCAATATTAACTGTAAAACACAAAAAAGTAAACAGAGTAAG
CTACAAAGCTTAGTAAGCTCGTATAGTTAATAAGTCATTTTGGTATATGTTAGTAATGGATTT
Found at i:64357984 original size:15 final size:15
Alignment explanation
Indices: 64357964--64357993 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
64357954 CAAACTCTTG
64357964 TGATCAGTAAAAATA
1 TGATCAGTAAAAATA
64357979 TGATCAGTAAAAATA
1 TGATCAGTAAAAATA
64357994 CTTCAAAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (15 bp):
TGATCAGTAAAAATA
Found at i:64358955 original size:2 final size:2
Alignment explanation
Indices: 64358948--64358984 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
64358938 TAAAACATGC
64358948 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
64358985 TAGTTATAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:64365593 original size:11 final size:11
Alignment explanation
Indices: 64365577--64365601 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
64365567 AATAATTATC
64365577 TTATTTTATTT
1 TTATTTTATTT
64365588 TTATTTTATTT
1 TTATTTTATTT
64365599 TTA
1 TTA
64365602 AGATTCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (11 bp):
TTATTTTATTT
Found at i:64365612 original size:17 final size:17
Alignment explanation
Indices: 64365592--64365633 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
64365582 TTATTTTTAT
64365592 TTTATTTTTAAGATTCA
1 TTTATTTTTAAGATTCA
64365609 TTTATTTTTAAGATTCA
1 TTTATTTTTAAGATTCA
*
64365626 TTTGTTTT
1 TTTATTTT
64365634 CCTTTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.24, C:0.05, G:0.07, T:0.64
Consensus pattern (17 bp):
TTTATTTTTAAGATTCA
Found at i:64369266 original size:18 final size:17
Alignment explanation
Indices: 64369243--64369278 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
64369233 ATAATGTTAT
*
64369243 ATATAATATAAATATAAA
1 ATATAAAATAAAT-TAAA
64369261 ATATAAAATAAATTAAA
1 ATATAAAATAAATTAAA
64369278 A
1 A
64369279 GTTATGCATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
ATATAAAATAAATTAAA
Found at i:64370260 original size:41 final size:43
Alignment explanation
Indices: 64370156--64370296 Score: 137
Period size: 41 Copynumber: 3.3 Consensus size: 43
64370146 TATGTGTTCT
** * *
64370156 CGTGTAAGACCACGTCTGGGA-TGTTGGCATCGGTATATGTGGTTA
1 CGTGTAAGACCATATCTGGGACAG-TGGCATC-G-ATATGTGATTA
* * *
64370201 CGTGTAAGACCATGTCTGGGACA-TCGGCATTG-TATTTGATT-
1 CGTGTAAGACCATATCTGGGACAGT-GGCATCGATATGTGATTA
*
64370242 CGTGTAAGACCCTATCTGGGACAGTGGCATCGATATGTGATTA
1 CGTGTAAGACCATATCTGGGACAGTGGCATCGATATGTGATTA
*
64370285 CATGTAAGACCA
1 CGTGTAAGACCA
64370297 CGTTCGGGAC
Statistics
Matches: 80, Mismatches: 11, Indels: 12
0.78 0.11 0.12
Matches are distributed among these distances:
41 27 0.34
42 16 0.20
43 10 0.12
44 2 0.03
45 25 0.31
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCATATCTGGGACAGTGGCATCGATATGTGATTA
Found at i:64370314 original size:84 final size:86
Alignment explanation
Indices: 64370155--64370318 Score: 203
Period size: 84 Copynumber: 1.9 Consensus size: 86
64370145 ATATGTGTTC
* * * * *
64370155 TCGTGTAAGACCACGTCTGGGATGTTGGCATCGGTATATGTGGTTACGTGTAAGACCATGTCTGG
1 TCGTGTAAGACCACATCTGGGAAGTTGGCATCGGTATATGTGATTACATGTAAGACCACGTCTGG
64370220 GACATCGGCATTGTATTTGAT
66 GACATCGGCATTGTATTTGAT
64370241 TCGTGTAAGACC-CTATCTGGGACAG-TGGCATC-G-ATATGTGATTACATGTAAGACCACGT-T
1 TCGTGTAAGACCAC-ATCTGGGA-AGTTGGCATCGGTATATGTGATTACATGTAAGACCACGTCT
* *
64370301 CGGGACGTTGGCATTGTA
64 -GGGACATCGGCATTGTA
64370319 CGATATATGT
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
83 1 0.01
84 38 0.56
85 2 0.03
86 26 0.38
87 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (86 bp):
TCGTGTAAGACCACATCTGGGAAGTTGGCATCGGTATATGTGATTACATGTAAGACCACGTCTGG
GACATCGGCATTGTATTTGAT
Found at i:64371269 original size:36 final size:36
Alignment explanation
Indices: 64371181--64371294 Score: 183
Period size: 36 Copynumber: 3.1 Consensus size: 36
64371171 CCTTTAGCTC
* * *
64371181 GAATAGTCCCCACACGTAGTTATCGGGTCTTACCCG
1 GAATAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
64371217 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GA-ATAATCTCCACACGTAGTCATCGGGTCTTACCCG
64371254 GAATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GAATAATCTCCACACGTAGTCATCGGGTCTTACCCG
64371290 GAATA
1 GAATA
64371295 TATTTCCAAG
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
36 40 0.56
37 32 0.44
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (36 bp):
GAATAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:64371490 original size:48 final size:48
Alignment explanation
Indices: 64371432--64371570 Score: 260
Period size: 48 Copynumber: 2.9 Consensus size: 48
64371422 ATATACACAC
*
64371432 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64371480 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
64371528 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
64371571 CATATATATT
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:64373227 original size:44 final size:44
Alignment explanation
Indices: 64373178--64373265 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
64373168 AACCTTCAAG
64373178 AAAGAAGAAAAAATATATGTACTAAGAGCTTCAAACTACTTGGC
1 AAAGAAGAAAAAATATATGTACTAAGAGCTTCAAACTACTTGGC
64373222 AAAGAAGAAAAAATATATGTACTAAGAGCTTCAAACTACTTGGC
1 AAAGAAGAAAAAATATATGTACTAAGAGCTTCAAACTACTTGGC
64373266 CGAATATCAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.48, C:0.14, G:0.16, T:0.23
Consensus pattern (44 bp):
AAAGAAGAAAAAATATATGTACTAAGAGCTTCAAACTACTTGGC
Found at i:64374774 original size:2 final size:2
Alignment explanation
Indices: 64374767--64374800 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
64374757 CGGCATTTGC
64374767 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64374801 GTTGTGGTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64382000 original size:19 final size:19
Alignment explanation
Indices: 64381976--64382054 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
64381966 AATCTTTAAG
64381976 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
64381995 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
64382014 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
64382031 GATATGCAATCTTAAAGATAT
1 GATATGCAATCTT--AGATAT
64382052 GAT
1 GAT
64382055 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:64382006 original size:36 final size:35
Alignment explanation
Indices: 64381966--64382053 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 35
64381956 ATGGAAATAT
64381966 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATC-TTAA-GATATGACAATCTTAGATATGATATGC
64382002 AATCTT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTAAGATATG--ACAATCTTAGATATGATATGC
64382038 AATCTTAAAGATATGA
1 AATCTT-AAGATATGA
64382054 TCTTGTAATC
Statistics
Matches: 47, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 31 0.66
38 7 0.15
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (35 bp):
AATCTTAAGATATGACAATCTTAGATATGATATGC
Found at i:64387166 original size:14 final size:13
Alignment explanation
Indices: 64387143--64387187 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
64387133 AAAGGGGGAT
*
64387143 AAAAAGAAAAGAG
1 AAAAAGAAAAAAG
*
64387156 AAAGAGAAAAAAAG
1 AAAAAG-AAAAAAG
64387170 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
64387183 AAAAA
1 AAAAA
64387188 ATGGAGAGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 17 0.61
14 11 0.39
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:64387167 original size:21 final size:21
Alignment explanation
Indices: 64387143--64387188 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
64387133 AAAGGGGGAT
*
64387143 AAAAAG-AAAAGAGAAAGAGAA
1 AAAAAGAAAAAGA-AAAAAGAA
64387164 AAAAAGAAAAAGAAAAAAGAA
1 AAAAAGAAAAAGAAAAAAGAA
64387185 AAAA
1 AAAA
64387189 TGGAGAGGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (21 bp):
AAAAAGAAAAAGAAAAAAGAA
Found at i:64387173 original size:7 final size:7
Alignment explanation
Indices: 64387143--64387188 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
64387133 AAAGGGGGAT
64387143 AAAAAGA
1 AAAAAGA
*
64387150 AAAGAG-
1 AAAAAGA
*
64387156 AAAGAGA
1 AAAAAGA
64387163 AAAAA-A
1 AAAAAGA
64387169 GAAAAAGA
1 -AAAAAGA
64387177 AAAAAGA
1 AAAAAGA
64387184 AAAAA
1 AAAAA
64387189 TGGAGAGGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
6 7 0.21
7 26 0.76
8 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:64388254 original size:44 final size:44
Alignment explanation
Indices: 64388191--64388822 Score: 394
Period size: 44 Copynumber: 14.4 Consensus size: 44
64388181 GATCTAAGAT
* * * *
64388191 GATTTGGCATCTCTTTATTGGCAGAGAGTAGATTGAAGACAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * *
64388235 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATGACT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * * * *
64388279 GATTTGGCATCTCTGTATTCAGCGGAGAGCAGATTGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATAACA
* * ** * * *
64388326 GATTTGGC-TTTCATGTGTTTAC-GTTGAAGCAAATCTAAGAT----
1 GATTTGGCATCTC-TGTATTGGCAG-AG-AGCAGATCGAAGATAACA
* *
64388367 GATTTGGCATCTCTGTATTGGCAGAGAGAAGATTGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * * *
64388411 GAATTGGCATCTCTGTATTGGCAGAAAGCAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* *
64388455 GATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGCTA
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATAAC-A
* * ** *
64388503 -ATTTGGCTTCCACGTGT-TT-AAATTGA-AGCA-AGTCTAAGAT----
1 GATTTGGCAT-CTC-TGTATTGGCA--GAGAGCAGA-TCGAAGATAACA
* *
64388543 GATTTGGCATCTTTGTATTGGCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* ** * *
64388587 GATTTGGCATCTCTGTATTGGCAGAGAGTAGATAAAATATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * * *
64388631 GATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAAACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCG--AAGATAACA
* * * ** *
64388678 GATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAGAT----
1 GATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATAACA
64388719 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-A
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-ACA
* * * *
64388763 GATTTGGCGTCTCTGTATTGTCAGAGAGCA-AGTTGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGA-TCGAAGATAACA
*
64388807 GATTTGGCATCCCTGT
1 GATTTGGCATCTCTGT
64388823 GTTTACAAGG
Statistics
Matches: 454, Mismatches: 89, Indels: 90
0.72 0.14 0.14
Matches are distributed among these distances:
39 11 0.02
40 39 0.09
41 35 0.08
42 4 0.01
43 1 0.00
44 218 0.48
45 53 0.12
46 7 0.02
47 66 0.15
48 14 0.03
49 6 0.01
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
Found at i:64388468 original size:176 final size:176
Alignment explanation
Indices: 64388174--64388822 Score: 962
Period size: 176 Copynumber: 3.7 Consensus size: 176
64388164 GTATTTATAC
* * * * *
64388174 TGAAGCAGATCTAAGATGATTTGGCATCTCTTTATTGGCAGAGAGTAGATTGAAGACAACAGATT
1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT
* * * *
64388239 TGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATGACTGATTTGGCATCTCTGTATTCAGCGG
66 TGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGG
* * *
64388304 AGAGCAGATTGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGT
131 AGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGT
* * *
64388350 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGAAGATTGAAGATAACAGAAT
1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT
*
64388415 TGGCATCTCTGTATTGGCAGAAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGG
66 TGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGG
* **
64388480 AGAGCAGATCGAAGACATAGCTAATTTGGCTTCCACGTGTTTAAAT
131 AGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGT
* * *
64388526 TGAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATT
1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT
* * *
64388591 TGGCATCTCTGTATTGGCAGAGAGTAGATAAAATATGACAGATTTGGCATCTCTGTATTCGGCGG
66 TGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGG
*
64388656 AGAGCAGATCGAAAACATAGCTGATTTGGCTTCCACGTGTTTACGT
131 AGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGT
*
64388702 TGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-AGAT
1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-ACAGAT
* * ** *
64388766 TTGGCGTCTCTGTATTGTCAGAGAGCA-AGTTGAAGAT-AGCAGATTTGGCATCCCTGT
65 TTGGCATCTCTGTATTGGCAGAGAGCAGA-TCAAAGATGA-CAGATTTGGCATCTCTGT
64388823 GTTTACAAGG
Statistics
Matches: 431, Mismatches: 39, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
175 2 0.00
176 429 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (176 bp):
TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT
TGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGG
AGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGT
Found at i:64388845 original size:44 final size:44
Alignment explanation
Indices: 64388795--64388947 Score: 116
Period size: 46 Copynumber: 3.4 Consensus size: 44
64388785 AGAGAGCAAG
64388795 TTGAAGATAGCAGATTTGGCATCCCTGTGTTTACAAGGAACAGA
1 TTGAAGATAGCAGATTTGGCATCCCTGTGTTTACAAGGAACAGA
* * * * * * *
64388839 TCGAAGACATAGTAGATCTGACATTCCTGTGCTTGC-AGCGAAGCAGA
1 TTGAAG--ATAGCAGATTTGGCATCCCTGTGTTTACAAG-GAA-CAGA
** * *
64388886 TTGAAGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAACA-A
1 TTGAAGATAGCAG-ATTTGGCATCCCTGTGTTTACAAGGAACAGA
*
64388928 GTTGAAGATAGTAGATTTGG
1 -TTGAAGATAGCAGATTTGG
64388948 TATCTCCATA
Statistics
Matches: 80, Mismatches: 20, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
42 2 0.03
43 12 0.15
44 24 0.30
45 7 0.09
46 26 0.32
47 9 0.11
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (44 bp):
TTGAAGATAGCAGATTTGGCATCCCTGTGTTTACAAGGAACAGA
Found at i:64389098 original size:45 final size:45
Alignment explanation
Indices: 64389017--64389213 Score: 200
Period size: 45 Copynumber: 4.4 Consensus size: 45
64389007 TACATCGAAG
* * * *
64389017 CAGATCCAAGATGACAGATTTGACATCTTTGTATTAGACGGGGAA
1 CAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAA
* * * * *
64389062 CATATCGGAGATAACATATTTGGCATCTCTGCATTAGAC-GGGAG
1 CAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAA
* * * * *
64389106 CAGATTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGACGGGGAG
1 CAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAA
* * *
64389150 CAGATCGAAGATAACAGATTTGGCGTCTCTATATTAGATGGGGAA
1 CAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAA
* * *
64389195 CAAATCAAAGATAGCAGAT
1 CAGATCGAAGATAACAGAT
64389214 ATCGCCTTCC
Statistics
Matches: 125, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
43 23 0.18
44 27 0.22
45 75 0.60
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (45 bp):
CAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAA
Found at i:64389579 original size:19 final size:19
Alignment explanation
Indices: 64389555--64389623 Score: 124
Period size: 19 Copynumber: 3.7 Consensus size: 19
64389545 AATCTTTAAG
64389555 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
64389574 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
64389593 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
64389610 GATATGCAATCTTA
1 GATATGCAATCTTA
64389624 AATTCTTGAA
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
17 17 0.35
19 31 0.65
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:64389585 original size:36 final size:35
Alignment explanation
Indices: 64389545--64389622 Score: 106
Period size: 36 Copynumber: 2.2 Consensus size: 35
64389535 ATGGAAATAT
64389545 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTT-A-GATATGACAATCTTAGATATGATATGC
64389581 AATC-TTAGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAGATATG--ACAATCTTAGATATGATATGC
64389617 AATCTT
1 AATCTT
64389623 AAATTCTTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
33 6 0.16
34 1 0.03
35 2 0.05
36 28 0.74
37 1 0.03
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (35 bp):
AATCTTTAGATATGACAATCTTAGATATGATATGC
Found at i:64396086 original size:7 final size:7
Alignment explanation
Indices: 64396074--64396102 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
64396064 TTTGGATTCT
64396074 TTTAAAA
1 TTTAAAA
64396081 TTTAAAA
1 TTTAAAA
64396088 TTTAAAA
1 TTTAAAA
64396095 TTTAAAA
1 TTTAAAA
64396102 T
1 T
64396103 GTAATCCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
TTTAAAA
Found at i:64399732 original size:3 final size:3
Alignment explanation
Indices: 64399724--64399765 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
64399714 CTATTACATG
64399724 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
64399766 GGCAAAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:64402339 original size:50 final size:52
Alignment explanation
Indices: 64402281--64402396 Score: 157
Period size: 50 Copynumber: 2.3 Consensus size: 52
64402271 TTAATAAAGT
*
64402281 CATGCATTATGTAACTCTCATGTTAGCT-AAGTTTGCATCA-TAAATTACA-A
1 CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTA-AGA
* * *
64402331 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTTCATCATTAAATTAAGT
1 CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTAAGA
*
64402383 CATGCATTAAGTAA
1 CATGCATTATGTAA
64402397 TTCATTTGTT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
50 26 0.45
51 12 0.21
52 20 0.34
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.37
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTAAGA
Found at i:64402407 original size:52 final size:49
Alignment explanation
Indices: 64402268--64402401 Score: 137
Period size: 50 Copynumber: 2.7 Consensus size: 49
64402258 ATGTGTTCTG
* *
64402268 CATTTAATAAAGTCATGCATTATGTAACTCTCATGTTAGCTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAA-T-TCATGTTAGCTAAGTTTGCAT
* * * *
64402319 CA-TAAATTACA-ACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTTCAT
1 CATTAAATTA-AGTCATGCATTATGTAA-T-TCATGTTAGCT-AAGTTTGCAT
*
64402370 CATTAAATTAAGTCATGCATTAAGTAATTCAT
1 CATTAAATTAAGTCATGCATTATGTAATTCAT
64402402 TTGTTATTTT
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
50 34 0.49
51 16 0.23
52 20 0.29
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (49 bp):
CATTAAATTAAGTCATGCATTATGTAATTCATGTTAGCTAAGTTTGCAT
Found at i:64408114 original size:13 final size:13
Alignment explanation
Indices: 64408066--64408121 Score: 53
Period size: 13 Copynumber: 4.2 Consensus size: 13
64408056 CAAATAAACC
64408066 AAAATTGTATTACT
1 AAAATT-TATTACT
**
64408080 AAAATCCATCT-CT
1 AAAATTTAT-TACT
64408093 AAAATTTTATTACT
1 AAAA-TTTATTACT
64408107 AAAATTTATTA-T
1 AAAATTTATTACT
64408119 AAA
1 AAA
64408122 CATTAAAGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
12 4 0.11
13 16 0.46
14 15 0.43
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.41
Consensus pattern (13 bp):
AAAATTTATTACT
Found at i:64409891 original size:20 final size:20
Alignment explanation
Indices: 64409866--64409918 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
64409856 ATTTTTAATA
*
64409866 TATTTTTAATAATTTATATT
1 TATTTTTAAGAATTTATATT
** *
64409886 TATTTTTAAGCTTTTTTATT
1 TATTTTTAAGAATTTATATT
64409906 TATTTTT-AGAATT
1 TATTTTTAAGAATT
64409919 ATTGTTAAGA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (20 bp):
TATTTTTAAGAATTTATATT
Found at i:64419066 original size:43 final size:42
Alignment explanation
Indices: 64418944--64419097 Score: 195
Period size: 42 Copynumber: 3.7 Consensus size: 42
64418934 CTAAGTTTAT
* * * *
64418944 GTGTAAGACCATATCT-GGATATGGAATCAGTATGATACTTC
1 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTC
64418985 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTC
1 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTC
* * * *
64419027 GTGTAAGACCATAGT-TGGGCTATTGGCATCCATATGAGATTAC
1 GTGTAAGACCATA-TCTAGGATA-TGGCATCAATATGAGATTTC
*
64419070 ATGTAAGACCATATCTAGGATATGGCAT
1 GTGTAAGACCATATCTAGGATATGGCAT
64419098 TGGTATGGTA
Statistics
Matches: 98, Mismatches: 11, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
41 16 0.16
42 46 0.47
43 36 0.37
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTC
Found at i:64422083 original size:27 final size:27
Alignment explanation
Indices: 64422016--64422085 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
64422006 ATGGAGGAAG
* * *
64422016 TACT-ATACTGGTGACTATGTCACATT
1 TACTGATACTGGTGGCTATGCCACAAT
*
64422042 TACTGTTACTGGTGGCTATGCCACAAT
1 TACTGATACTGGTGGCTATGCCACAAT
64422069 TACTGATACTGGTGGCT
1 TACTGATACTGGTGGCT
64422086 TTACCACATT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
26 4 0.11
27 34 0.89
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (27 bp):
TACTGATACTGGTGGCTATGCCACAAT
Found at i:64422107 original size:27 final size:27
Alignment explanation
Indices: 64422021--64422107 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 27
64422011 GGAAGTACTA
* **
64422021 TACTGGTGACTATGTCACATTTACTGT
1 TACTGGTGGCTATACCACATTTACTGT
* * *
64422048 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATACCACATTTACTGT
* *
64422075 TACTGGTGGCTTTACCACATTTATTGT
1 TACTGGTGGCTATACCACATTTACTGT
*
64422102 TCCTGG
1 TACTGG
64422108 CAGCTACGCT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TACTGGTGGCTATACCACATTTACTGT
Found at i:64424058 original size:8 final size:8
Alignment explanation
Indices: 64424047--64424086 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
64424037 TTTAAGAAAT
64424047 TAATATAA
1 TAATATAA
*
64424055 TAATATAT
1 TAATATAA
64424063 TAATATAA
1 TAATATAA
64424071 T-ATAATAA
1 TAAT-ATAA
64424079 TAATATAA
1 TAATATAA
64424087 AACAAACAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 2 0.07
8 24 0.86
9 2 0.07
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TAATATAA
Found at i:64425026 original size:44 final size:43
Alignment explanation
Indices: 64424978--64425124 Score: 116
Period size: 44 Copynumber: 3.2 Consensus size: 43
64424968 CCTTGGGTCA
*
64424978 ATGAGGCACTAATAGTGTCGTACTGTTACTTCGACTGCGTGTCG
1 ATGAGGCACTAATAGTGTCGTACTGTTACTT-GACTTCGTGTCG
** * * * *
64425022 ATGAGGCACTTCGT-GTGTTGTACTGTTTCTATTACTTCGATTTAATCTG
1 ATGAGGCAC-TAATAGTGTCGTACTGTTACT-TGACTTCG---T-GTC-G
* * *
64425071 ATAAGGCACTAATAGAGTCGTACTGTTACTTTGACTTTGTGTCG
1 ATGAGGCACTAATAGTGTCGTACTGTTAC-TTGACTTCGTGTCG
64425115 ATGAGGCACT
1 ATGAGGCACT
64425125 TCGTGTGTTG
Statistics
Matches: 77, Mismatches: 17, Indels: 18
0.69 0.15 0.16
Matches are distributed among these distances:
44 38 0.49
45 5 0.06
46 1 0.01
47 1 0.01
48 4 0.05
49 27 0.35
50 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.37
Consensus pattern (43 bp):
ATGAGGCACTAATAGTGTCGTACTGTTACTTGACTTCGTGTCG
Found at i:64425138 original size:44 final size:44
Alignment explanation
Indices: 64424992--64425141 Score: 115
Period size: 44 Copynumber: 3.3 Consensus size: 44
64424982 GGCACTAATA
* **
64424992 GTGTCGTACTGTTACTTCGACTGCGTGTCGATGAGGCACTTCGT
1 GTGTCGTACTGTTACTTTGACTTTGTGTCGATGAGGCACTTCGT
* * * * * **
64425036 GTGTTGTACTGTTTCTATT-ACTTCGATTTAATCTGATAAGGCAC-TAAT
1 GTGTCGTACTGTTACT-TTGACTT---TGT-GTC-GATGAGGCACTTCGT
*
64425084 AGAGTCGTACTGTTACTTTGACTTTGTGTCGATGAGGCACTTCGT
1 -GTGTCGTACTGTTACTTTGACTTTGTGTCGATGAGGCACTTCGT
*
64425129 GTGTTGTACTGTT
1 GTGTCGTACTGTT
64425142 TTTGTTACTT
Statistics
Matches: 77, Mismatches: 20, Indels: 18
0.67 0.17 0.16
Matches are distributed among these distances:
44 37 0.48
45 5 0.06
46 2 0.03
47 1 0.01
48 6 0.08
49 26 0.34
ACGTcount: A:0.18, C:0.17, G:0.25, T:0.40
Consensus pattern (44 bp):
GTGTCGTACTGTTACTTTGACTTTGTGTCGATGAGGCACTTCGT
Found at i:64425140 original size:93 final size:93
Alignment explanation
Indices: 64424981--64425174 Score: 293
Period size: 93 Copynumber: 2.1 Consensus size: 93
64424971 TGGGTCAATG
*
64424981 AGGCACTAATAGTGTCGTACTGTTACTTCGACTGCGTGTCGATGAGGCACTTCGTGTGTTGTACT
1 AGGCACTAATAGAGTCGTACTGTTACTTCGACTGCGTGTCGATGAGGCACTTCGTGTGTTGTACT
64425046 GTTTCTATTACTTC-GATTTAAT-CTGATA
66 GTTTCTATTACTTCAG-TTTAATCCT-ATA
* **
64425074 AGGCACTAATAGAGTCGTACTGTTACTTTGACTTTGTGTCGATGAGGCACTTCGTGTGTTGTACT
1 AGGCACTAATAGAGTCGTACTGTTACTTCGACTGCGTGTCGATGAGGCACTTCGTGTGTTGTACT
* *
64425139 GTTTTTGTTACTTCAGTTTAATCCTATA
66 GTTTCTATTACTTCAGTTTAATCCTATA
*
64425167 AGGTACTA
1 AGGCACTA
64425175 GGTACCATAC
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
93 89 0.97
94 3 0.03
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (93 bp):
AGGCACTAATAGAGTCGTACTGTTACTTCGACTGCGTGTCGATGAGGCACTTCGTGTGTTGTACT
GTTTCTATTACTTCAGTTTAATCCTATA
Found at i:64428695 original size:14 final size:14
Alignment explanation
Indices: 64428676--64428706 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
64428666 TGCTACTATT
64428676 TTACTATTATGTTG
1 TTACTATTATGTTG
*
64428690 TTACTATTTTGTTG
1 TTACTATTATGTTG
64428704 TTA
1 TTA
64428707 TTGTTTGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61
Consensus pattern (14 bp):
TTACTATTATGTTG
Found at i:64428940 original size:12 final size:12
Alignment explanation
Indices: 64428910--64428943 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
64428900 TATATATTTT
64428910 AAAATT-ATATA
1 AAAATTAATATA
64428921 AAAA-TAATATA
1 AAAATTAATATA
64428932 AAAATTAATATA
1 AAAATTAATATA
64428944 GGCAGGCCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.62
12 7 0.33
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:64432302 original size:47 final size:46
Alignment explanation
Indices: 64432110--64432332 Score: 138
Period size: 47 Copynumber: 4.8 Consensus size: 46
64432100 CACATTATGA
* * * *
64432110 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATTGGCATTGAGACGA-
1 GAGCCAGAGTAAGACCATGTCTGGGACATGGCA-TCGC-TTGAGA-TAT
* * * * * *
64432158 GTGCTAGTGGAAGA-CATGTCTGGGACAT-GCTTCGGCCTTGAGATGT
1 GAGCCAGAGTAAGACCATGTCTGGGACATGGCATC-G-CTTGAGATAT
* * * * *
64432204 AAGCTA-ATGTAAGA-CATGTCTGGGACAT-GCATCGGTT-ACAAAAT
1 GAGCCAGA-GTAAGACCATGTCTGGGACATGGCATCGCTTGA-GATAT
64432248 GATAGCCAGAGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
1 G--AGCCAGAGTAAGACCATGTCTGGGACATGGCATCG-CTTGAGATAT
* *
64432297 GAGCCA-ATGTAAGACTATGTTTGGGACATGGCATCG
1 GAGCCAGA-GTAAGACCATGTCTGGGACATGGCATCG
64432333 GCATCCTACC
Statistics
Matches: 138, Mismatches: 24, Indels: 27
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.03
45 2 0.01
46 47 0.34
47 60 0.43
48 17 0.12
49 6 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (46 bp):
GAGCCAGAGTAAGACCATGTCTGGGACATGGCATCGCTTGAGATAT
Found at i:64432322 original size:140 final size:140
Alignment explanation
Indices: 64432065--64432326 Score: 339
Period size: 140 Copynumber: 1.9 Consensus size: 140
64432055 CACTTGTGTG
* ** *
64432065 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGT
1 AGCTAATGTAAGACATGTCTGGGACATGCATCAGCCACAAAATGAGAGCCAGAGTAAGACCATGT
* * * * * *
64432130 CTGGGATATGGCATTGGCATTGAGACGAGTGCTAGTGGAAGACATGTCTGGGACATGCTTCGGCC
66 CTGGGACATGGCATCGACATTGAGACGAGAGCCAATGGAAGACATGTCTGGGACATGCTTCGGCC
64432195 TTGAGATGTA
131 TTGAGATGTA
* ** *
64432205 AGCTAATGTAAGACATGTCTGGGACATGCATCGGTTACAAAATGATAGCCAGAGTAAGACCATGT
1 AGCTAATGTAAGACATGTCTGGGACATGCATCAGCCACAAAATGAGAGCCAGAGTAAGACCATGT
* * *
64432270 CTGGGACATGGCATCGAC-TTGAGA-TATGAGCCAATGTAAGACTATGTTTGGGACATG
66 CTGGGACATGGCATCGACATTGAGACGA-GAGCCAATGGAAGAC-ATGTCTGGGACATG
64432327 GCATCGGCAT
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
138 1 0.01
139 17 0.17
140 85 0.83
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (140 bp):
AGCTAATGTAAGACATGTCTGGGACATGCATCAGCCACAAAATGAGAGCCAGAGTAAGACCATGT
CTGGGACATGGCATCGACATTGAGACGAGAGCCAATGGAAGACATGTCTGGGACATGCTTCGGCC
TTGAGATGTA
Found at i:64435303 original size:21 final size:21
Alignment explanation
Indices: 64435262--64435305 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
64435252 TTAAGAAATT
*
64435262 AATATAATAATATATTAATAA
1 AATATAATAATATAATAATAA
64435283 AATATAATAATAATAAT-ATAA
1 AATATAATAAT-ATAATAATAA
64435304 AA
1 AA
64435306 CAAATAAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
AATATAATAATATAATAATAA
Found at i:64437411 original size:21 final size:21
Alignment explanation
Indices: 64437387--64437440 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
64437377 CGGGATGACA
64437387 ACACGGGCGTGTC-ATAAAGAC
1 ACACGGGCGTGTCTATAAA-AC
* * * *
64437408 ACACAGGCATGTCTCTAAACC
1 ACACGGGCGTGTCTATAAAAC
64437429 ACACGGGCGTGT
1 ACACGGGCGTGT
64437441 GGTGTTGTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.17
Consensus pattern (21 bp):
ACACGGGCGTGTCTATAAAAC
Found at i:64438830 original size:3 final size:3
Alignment explanation
Indices: 64438818--64439103 Score: 182
Period size: 3 Copynumber: 94.7 Consensus size: 3
64438808 GTTATTTTGC
* * *
64438818 TAT T-T TAT TAT TAA AAT TAAT TAAT TAAT TAT TAC TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT T-AT T-AT T-AT TAT TAT TAT TAT TAT TAT
* * *
64438865 T-T TCAC TAT TAT TAT TAT TAT TAA TA- TAT TCT TAT TAAT GTAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT
* * * *
64438911 TAT TTT CTAC T-T TAT TAT TAT TAT T-G TAT TAT TAC TAT TAT TAT
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
64438955 CAT CA- TAT TAT TA- AACT AAT TAAT T-T TA- TAT TGT TAT TAT TA-
1 TAT TAT TAT TAT TAT TA-T TAT T-AT TAT TAT TAT TAT TAT TAT TAT
* * * **
64438997 CAT TAAA TAT T-T TCT T-T TCG TATT TACT TGCAT TAT TAT TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TA-T TA-T T--AT TAT TAT TAT TAT
64439042 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
64439090 TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA
64439104 CCCTTTTACT
Statistics
Matches: 227, Mismatches: 33, Indels: 46
0.74 0.11 0.15
Matches are distributed among these distances:
2 19 0.08
3 176 0.78
4 28 0.12
5 3 0.01
6 1 0.00
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:64438899 original size:14 final size:14
Alignment explanation
Indices: 64438822--64438914 Score: 59
Period size: 14 Copynumber: 6.6 Consensus size: 14
64438812 TTTTGCTATT
64438822 TTATTATTAA-A-A
1 TTATTATTAATATA
64438834 TTAATTAATTAAT-TA
1 TT-ATT-ATTAATATA
* *
64438849 TTACTATTATTATTA
1 TTATTATTAATA-TA
* *
64438864 TT-TTCACTATTATTA
1 TTATT-ATTAATA-TA
64438879 TTATTATTAATATA
1 TTATTATTAATATA
* *
64438893 TTCTTATTAATGTA
1 TTATTATTAATATA
64438907 TTATTATT
1 TTATTATT
64438915 TTCTACTTTA
Statistics
Matches: 64, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
12 2 0.03
13 8 0.12
14 29 0.45
15 23 0.36
16 2 0.03
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (14 bp):
TTATTATTAATATA
Found at i:64439137 original size:17 final size:17
Alignment explanation
Indices: 64439107--64439139 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
64439097 ATTATTACCC
64439107 TTTTACTTTTTATTTTG
1 TTTTACTTTTTATTTTG
64439124 TTTTA-TTTTATATTTT
1 TTTTACTTTT-TATTTT
64439140 TCTCTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (17 bp):
TTTTACTTTTTATTTTG
Found at i:64441188 original size:15 final size:15
Alignment explanation
Indices: 64441168--64441219 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
64441158 ATGACACTTA
*
64441168 ATGAATAAGAATATC
1 ATGAATAACAATATC
*
64441183 ATGAATAACAATGTC
1 ATGAATAACAATATC
64441198 ATGCAATGACACAAT-TC
1 ATG-AAT-A-ACAATATC
64441215 ATGAA
1 ATGAA
64441220 AATAGTTAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 16 0.50
16 5 0.16
17 6 0.19
18 5 0.16
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.25
Consensus pattern (15 bp):
ATGAATAACAATATC
Found at i:64442260 original size:26 final size:26
Alignment explanation
Indices: 64442224--64442333 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
64442214 TGATACAAAT
64442224 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
64442250 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
64442276 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
64442302 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
64442328 TGATAA
1 TGATAA
64442334 GAATTTCATA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:64449927 original size:62 final size:62
Alignment explanation
Indices: 64449796--64449915 Score: 183
Period size: 60 Copynumber: 2.0 Consensus size: 62
64449786 ATGAGGTTGG
* *
64449796 GAATATTTTCTCATTCGGCCCTTGTTCTTTTTTCGCGTGTTATATTTTAGTCATTTATTTGA
1 GAATATTTTCTCATTCGGCCCTCGTTCTTTTTTCGCGTGTTATATTTTAGTCATCTATTTGA
*
64449858 GAATATTTTC-CTATTCGGCCC-CGTTCTTTTTT-GCGTGTTATATTTTAGTCCTCTATTT
1 GAATATTTTCTC-ATTCGGCCCTCGTTCTTTTTTCGCGTGTTATATTTTAGTCATCTATTT
64449916 ACTTATTTAT
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
60 24 0.44
61 11 0.20
62 19 0.35
ACGTcount: A:0.15, C:0.18, G:0.14, T:0.53
Consensus pattern (62 bp):
GAATATTTTCTCATTCGGCCCTCGTTCTTTTTTCGCGTGTTATATTTTAGTCATCTATTTGA
Found at i:64452012 original size:46 final size:46
Alignment explanation
Indices: 64451960--64452135 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
64451950 TATTTGGGCA
* *
64451960 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* ** * * * * *
64452006 TCCGAGCTGGTTGAGTTGAGTCTAAGTTC-GTGA--GACGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
64452053 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
64452099 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64452136 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 60 0.59
47 26 0.26
48 3 0.03
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:64452115 original size:93 final size:93
Alignment explanation
Indices: 64451956--64452128 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
64451946 AGGATATTTG
* * *
64451956 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAGCTGGTTGAG
1 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG
64452021 TTGAGTCTAAGTTCGTGAGACGTAACTA
66 TTGAGTCTAAGTTCGTGAGACGTAACTA
* *
64452049 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG
*
64452114 TTGAGTCTGAGTTCG
66 TTGAGTCTAAGTTCG
64452129 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG
TTGAGTCTAAGTTCGTGAGACGTAACTA
Found at i:64458066 original size:35 final size:34
Alignment explanation
Indices: 64458000--64458070 Score: 115
Period size: 35 Copynumber: 2.1 Consensus size: 34
64457990 GGAAGGTCTG
**
64458000 AATGAGGAAATCAAGCTGTTGATTGGGATTCTCTA
1 AATGAGGAAATCAAGCTGTTGATTGAAATTCT-TA
64458035 AATGAGGAAATCAAGCTGTTGATTGAAATTCTTA
1 AATGAGGAAATCAAGCTGTTGATTGAAATTCTTA
64458069 AA
1 AA
64458071 ATACGGGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
34 4 0.12
35 30 0.88
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.31
Consensus pattern (34 bp):
AATGAGGAAATCAAGCTGTTGATTGAAATTCTTA
Found at i:64467412 original size:10 final size:10
Alignment explanation
Indices: 64467384--64467442 Score: 77
Period size: 10 Copynumber: 6.0 Consensus size: 10
64467374 TGAAATTCTA
64467384 AAAGATAAAT
1 AAAGATAAAT
*
64467394 AAA-ATAATT
1 AAAGATAAAT
*
64467403 AAAGATAATT
1 AAAGATAAAT
64467413 AAAGATAAAT
1 AAAGATAAAT
64467423 AAAGATAAAT
1 AAAGATAAAT
64467433 GAAA-ATAAAT
1 -AAAGATAAAT
64467443 CCTAAAATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.18
10 34 0.76
11 3 0.07
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:64468232 original size:94 final size:96
Alignment explanation
Indices: 64468096--64468275 Score: 292
Period size: 94 Copynumber: 1.9 Consensus size: 96
64468086 ATTTAATTTA
* * * *
64468096 TTTATTTTTACTTAGGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACC-CA
1 TTTATTTTTACCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA
*
64468160 CCCCGGTTACTTAGCCCAACATGCTCTAATT
66 CCCCGGTTACTCAGCCCAACATGCTCTAATT
*
64468191 TTTATTTTT-CCTAAGAACATATCGAATCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA
1 TTTATTTTTACCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA
64468255 CCCCGGTTACTCAGCCCAACA
66 CCCCGGTTACTCAGCCCAACA
64468276 CTTTCTTAGA
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
94 47 0.60
95 31 0.40
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (96 bp):
TTTATTTTTACCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA
CCCCGGTTACTCAGCCCAACATGCTCTAATT
Found at i:64469072 original size:10 final size:9
Alignment explanation
Indices: 64469062--64469128 Score: 54
Period size: 10 Copynumber: 7.7 Consensus size: 9
64469052 ATCTGAAAAT
64469062 AATAAATAA
1 AATAAATAA
*
64469071 TA-AAAT-A
1 AATAAATAA
64469078 -ATAAGATAA
1 AATAA-ATAA
64469087 AATAAATAA
1 AATAAATAA
*
64469096 AA-ATA-AA
1 AATAAATAA
64469103 AATAAAATAA
1 AAT-AAATAA
64469113 AATAAAATAA
1 AAT-AAATAA
64469123 AATAAA
1 AATAAA
64469129 AATTGGGTTG
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
6 1 0.02
7 7 0.15
8 8 0.17
9 13 0.27
10 19 0.40
ACGTcount: A:0.78, C:0.00, G:0.01, T:0.21
Consensus pattern (9 bp):
AATAAATAA
Found at i:64469091 original size:21 final size:20
Alignment explanation
Indices: 64469065--64469122 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 20
64469055 TGAAAATAAT
64469065 AAATAATAAAATAATAAGATA
1 AAATAATAAAATAATAA-ATA
64469086 AAATAAATAAAAATAA-AAATA
1 AAAT-AAT-AAAATAATAAATA
64469107 AAATAAAATAAAATAA
1 AAAT--AATAAAATAA
64469123 AATAAAAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
21 18 0.53
22 9 0.26
23 7 0.21
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.21
Consensus pattern (20 bp):
AAATAATAAAATAATAAATA
Found at i:64469129 original size:5 final size:5
Alignment explanation
Indices: 64469069--64469129 Score: 74
Period size: 5 Copynumber: 12.4 Consensus size: 5
64469059 AATAATAAAT
*
64469069 AATAA AAT-- AATAA GATAA AAT-A AATAAA AATAAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA AAT-AA AAT-AA AATAA AATAA AATAA
64469118 AATAA AATAA AA
1 AATAA AATAA AA
64469130 ATTGGGTTGC
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
3 3 0.06
4 4 0.08
5 33 0.66
6 10 0.20
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:64469131 original size:26 final size:26
Alignment explanation
Indices: 64469058--64469129 Score: 53
Period size: 26 Copynumber: 2.8 Consensus size: 26
64469048 TAATATCTGA
* *
64469058 AAATAATAAATAATAAA-ATAATAAGAT
1 AAATAA-AAATAA-AAATAAAATAAAAT
*
64469085 AAA-ATAAATAAAAATAAAAATAAAAT
1 AAATAAAAATAAAAAT-AAAATAAAAT
64469111 AAA-ATAAAAT-AAAATAAAA
1 AAATA-AAAATAAAAATAAAA
64469130 ATTGGGTTGC
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
24 3 0.08
25 10 0.26
26 18 0.47
27 7 0.18
ACGTcount: A:0.78, C:0.00, G:0.01, T:0.21
Consensus pattern (26 bp):
AAATAAAAATAAAAATAAAATAAAAT
Found at i:64471332 original size:38 final size:38
Alignment explanation
Indices: 64471281--64471358 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
64471271 GGAAAGCACG
*
64471281 TAGTTCAATTTGATCCTCAGTTACCCCTTGAGGTTTCA
1 TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA
64471319 TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA
1 TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA
64471357 TA
1 TA
64471359 CTAAGGCAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (38 bp):
TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA
Found at i:64471948 original size:12 final size:12
Alignment explanation
Indices: 64471927--64471960 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
64471917 TGTAAAATAG
*
64471927 TAATATTAAAAA
1 TAATAGTAAAAA
64471939 TAATAGTAAAAA
1 TAATAGTAAAAA
64471951 TAATAGTAAA
1 TAATAGTAAA
64471961 GGGGAAGTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (12 bp):
TAATAGTAAAAA
Found at i:64472891 original size:10 final size:10
Alignment explanation
Indices: 64472872--64472931 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
64472862 TGAAATTCTA
64472872 AAAGATAAAT
1 AAAGATAAAT
64472882 ACAA-ATAAAT
1 A-AAGATAAAT
*
64472892 AAAGATAATT
1 AAAGATAAAT
64472902 AAAGATAAAT
1 AAAGATAAAT
64472912 AAAGATAAAT
1 AAAGATAAAT
64472922 GAAA-ATAAAT
1 -AAAGATAAAT
64472932 CCTAAAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:64481263 original size:17 final size:17
Alignment explanation
Indices: 64481241--64481273 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
64481231 ATAAATATTT
64481241 ATAATGAAGATCAAACA
1 ATAATGAAGATCAAACA
64481258 ATAATGAAGATCAAAC
1 ATAATGAAGATCAAAC
64481274 CTAGACAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (17 bp):
ATAATGAAGATCAAACA
Found at i:64486179 original size:79 final size:80
Alignment explanation
Indices: 64486078--64486262 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 80
64486068 ACGACTCGCT
** *
64486078 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGACCTT-ACCC
* *
64486141 GGGTTTAGTAACTT-GCA
63 GGATATAGTAACTTAGCA
* **
64486158 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTTGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGA-CCTTACCCGG
*
64486222 ATATAGTCACTTAGCA
65 ATATAGTAACTTAGCA
64486238 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64486263 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 51 0.56
80 37 0.41
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGACCTTACCCGGA
TATAGTAACTTAGCA
Found at i:64486262 original size:40 final size:39
Alignment explanation
Indices: 64486071--64486262 Score: 156
Period size: 40 Copynumber: 4.8 Consensus size: 39
64486061 GGATATAACG
* ** * *
64486071 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
64486111 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
64486151 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
64486190 ACTCGCACGAATGCCTTC-GGATCCTT-GTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA--CTTAGCCCGGATATAGTA
*
64486230 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
64486263 CATCATTCGA
Statistics
Matches: 121, Mismatches: 22, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 73 0.60
41 13 0.11
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:64489680 original size:14 final size:14
Alignment explanation
Indices: 64489661--64489689 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
64489651 ACAGATGGAT
64489661 TCGTATAATTCTTA
1 TCGTATAATTCTTA
64489675 TCGTATAATTCTTA
1 TCGTATAATTCTTA
64489689 T
1 T
64489690 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:64491718 original size:591 final size:591
Alignment explanation
Indices: 64490597--64491779 Score: 2339
Period size: 591 Copynumber: 2.0 Consensus size: 591
64490587 CACCCATGAG
64490597 TAAATATTTCGTAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGG
1 TAAATATTTCGTAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGG
64490662 AGCATAAACTGAAACATTCAGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCGCATAAAAAC
66 AGCATAAACTGAAACATTCAGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCGCATAAAAAC
64490727 ATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTACTATAGCCATTTCTATACATTC
131 ATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTACTATAGCCATTTCTATACATTC
64490792 AATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTT
196 AATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTT
64490857 CGTTGAGATTGTTCGTTTGGAAATTTCCTGAAAAGCTAATCATAGGTTCTTCTCTCCATCGGAAC
261 CGTTGAGATTGTTCGTTTGGAAATTTCCTGAAAAGCTAATCATAGGTTCTTCTCTCCATCGGAAC
64490922 AATAAGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGACGAAATATAACCAAGGTATATCTTT
326 AATAAGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGACGAAATATAACCAAGGTATATCTTT
64490987 TTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGA
391 TTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGA
64491052 AAATAAAACTTCCATCAAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGA
456 AAATAAAACTTCCATCAAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGA
64491117 ATGAAGTTTTCATTCTATACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAAT
521 ATGAAGTTTTCATTCTATACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAAT
64491182 CCCAAT
586 CCCAAT
64491188 TAAATATTTCGTAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGG
1 TAAATATTTCGTAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGG
64491253 AGCATAAACTGAAACATTCAGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCGCATAAAAAC
66 AGCATAAACTGAAACATTCAGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCGCATAAAAAC
64491318 ATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTACTATAGCCATTTCTATACATTC
131 ATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTACTATAGCCATTTCTATACATTC
64491383 AATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTT
196 AATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTT
64491448 CGTTGAGATTGTTCGTTTGGAAATTTCCTGAAAAGCTAATCATAGGTTCTTCTCTCCATCGGAAC
261 CGTTGAGATTGTTCGTTTGGAAATTTCCTGAAAAGCTAATCATAGGTTCTTCTCTCCATCGGAAC
*
64491513 AATAGGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGACGAAATATAACCAAGGTATATCTTT
326 AATAAGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGACGAAATATAACCAAGGTATATCTTT
* *
64491578 TTTATTAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGA
391 TTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGA
64491643 AAATAAAACTTCCATCAAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGA
456 AAATAAAACTTCCATCAAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGA
64491708 ATGAAGTTTTCATTCTATACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAAT
521 ATGAAGTTTTCATTCTATACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAAT
64491773 CCCAAT
586 CCCAAT
64491779 T
1 T
64491780 GTTTAGAACT
Statistics
Matches: 589, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
591 589 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (591 bp):
TAAATATTTCGTAGTAGCCTCATTAGACCGTACATCTTTCTTGGTATATCCAGATAATAGGTAGG
AGCATAAACTGAAACATTCAGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCGCATAAAAAC
ATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTACTATAGCCATTTCTATACATTC
AATGTACTCTACGGATAGAGGAATACATAGAGTTGAACATAGTAAAATAAGAAATTGAAAGATTT
CGTTGAGATTGTTCGTTTGGAAATTTCCTGAAAAGCTAATCATAGGTTCTTCTCTCCATCGGAAC
AATAAGGCCGTTATGCTCATTACTAAACTTGTTGAAGAGACGAAATATAACCAAGGTATATCTTT
TTGATCAGAGGTTGAATCGATCATCAGAAGAAGAATTAGGCCAAAAATTAGGATACATTCTGGGA
AAATAAAACTTCCATCAAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGA
ATGAAGTTTTCATTCTATACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAAT
CCCAAT
Found at i:64493188 original size:26 final size:25
Alignment explanation
Indices: 64493145--64493201 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
64493135 CCACTCTTTC
* *
64493145 GAGCT-ATGAACAGTAAGCTCCTCTT
1 GAGCTGATGAACAATAAGCT-CTATT
*
64493170 GAGCTGATGGACAATAAGCTCTATT
1 GAGCTGATGAACAATAAGCTCTATT
64493195 GAGCTGA
1 GAGCTGA
64493202 AACGGTAAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (25 bp):
GAGCTGATGAACAATAAGCTCTATT
Found at i:64493232 original size:23 final size:23
Alignment explanation
Indices: 64493184--64493296 Score: 86
Period size: 23 Copynumber: 4.7 Consensus size: 23
64493174 TGATGGACAA
* **
64493184 TAAGCTCTATTGAGCTGA-AACGG
1 TAAGCTCTA-CGAGCTGAGAATAG
* *
64493207 TAAGCTCTGACAAGCTGA-ATTAG
1 TAAGCTCT-ACGAGCTGAGAATAG
64493230 TAAGCTCATACGAGCTGAGAATAG
1 TAAGCTC-TACGAGCTGAGAATAG
* *
64493254 TAAGCTCTCACGAGCTGATATATGGG
1 TAAGCTCT-ACGAGCTGAGA-AT-AG
64493280 TAAGCTCATACGAGCTG
1 TAAGCTC-TACGAGCTG
64493297 TGGTGAGTCC
Statistics
Matches: 74, Mismatches: 9, Indels: 11
0.79 0.10 0.12
Matches are distributed among these distances:
23 32 0.43
24 23 0.31
25 2 0.03
26 16 0.22
27 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (23 bp):
TAAGCTCTACGAGCTGAGAATAG
Found at i:64493282 original size:26 final size:24
Alignment explanation
Indices: 64493206--64493296 Score: 91
Period size: 24 Copynumber: 3.8 Consensus size: 24
64493196 AGCTGAAACG
*
64493206 GTAAGCTC-TGACAAGCTGAAT-TA
1 GTAAGCTCAT-ACGAGCTGAATATA
64493229 GTAAGCTCATACGAGCTGAGA-ATA
1 GTAAGCTCATACGAGCTGA-ATATA
*
64493253 GTAAGCTC-TCACGAGCTGATATATGG
1 GTAAGCTCAT-ACGAGCTGA-ATAT-A
64493279 GTAAGCTCATACGAGCTG
1 GTAAGCTCATACGAGCTG
64493297 TGGTGAGTCC
Statistics
Matches: 58, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
23 17 0.29
24 22 0.38
25 2 0.03
26 16 0.28
27 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (24 bp):
GTAAGCTCATACGAGCTGAATATA
Found at i:64495869 original size:34 final size:34
Alignment explanation
Indices: 64495843--64495918 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
64495833 ATAACAGTCT
64495843 AGTAACAGT-TAGGGCCTTAGCCCAATACAGTATC
1 AGTAACAGTGTA-GGCCTTAGCCCAATACAGTATC
* * * *
64495877 AGTAGCAGTGTAGGCTTTAGCCCATTACAGTAAC
1 AGTAACAGTGTAGGCCTTAGCCCAATACAGTATC
64495911 AGTAACAG
1 AGTAACAG
64495919 AAATGCAATC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
34 34 0.94
35 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (34 bp):
AGTAACAGTGTAGGCCTTAGCCCAATACAGTATC
Found at i:64496369 original size:18 final size:18
Alignment explanation
Indices: 64496341--64496375 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
64496331 AAAGTTCATA
64496341 ACACGGCCCATGTAGGCCC
1 ACACGGCCCATGT-GGCCC
64496360 ACAC-GCCCATGTGGCC
1 ACACGGCCCATGTGGCC
64496376 TACAAAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 8 0.50
19 4 0.25
ACGTcount: A:0.20, C:0.43, G:0.26, T:0.11
Consensus pattern (18 bp):
ACACGGCCCATGTGGCCC
Found at i:64504347 original size:43 final size:43
Alignment explanation
Indices: 64504263--64504348 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
64504253 TATGTGATTC
* *
64504263 CGATATGTGTTTACGAGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATGTGGTTACGAGTAAGACCCTGTCTAGGACAGTGGCAT
64504306 CGATATGTGGTTAC-ATGTAAGACCAC-GTCTAGGAC-GTTGGCAT
1 CGATATGTGGTTACGA-GTAAGACC-CTGTCTAGGACAG-TGGCAT
64504349 TGTACCATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 35 0.92
44 1 0.03
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (43 bp):
CGATATGTGGTTACGAGTAAGACCCTGTCTAGGACAGTGGCAT
Found at i:64511346 original size:6 final size:6
Alignment explanation
Indices: 64511325--64511373 Score: 71
Period size: 6 Copynumber: 8.0 Consensus size: 6
64511315 AAATTTGTTT
* *
64511325 ATAAAA ACATAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAG ATAAAA
1 ATAAAA ATA-AAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
64511374 TGAAATTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
6 33 0.87
7 5 0.13
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:64521191 original size:18 final size:18
Alignment explanation
Indices: 64521142--64521181 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
64521132 ATCAGGCAAG
64521142 TTTCACATACATGTATTT
1 TTTCACATACATGTATTT
64521160 TTTCACATACATGTATTT
1 TTTCACATACATGTATTT
64521178 TTTC
1 TTTC
64521182 CATGTCATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.25, C:0.17, G:0.05, T:0.53
Consensus pattern (18 bp):
TTTCACATACATGTATTT
Found at i:64533369 original size:41 final size:41
Alignment explanation
Indices: 64533312--64533394 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
64533302 GAGTAAGGCA
*
64533312 AGTTGTCGAATAAGACCATAGCCGGGCTGTGGCAATCGAAT
1 AGTTGTCGAATAAGACCAAAGCCGGGCTGTGGCAATCGAAT
* *
64533353 AGTTGTCGAATAAGACCAAAGTCGGGTTGTGGCAATCGAAT
1 AGTTGTCGAATAAGACCAAAGCCGGGCTGTGGCAATCGAAT
64533394 A
1 A
64533395 ATAAGGCCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (41 bp):
AGTTGTCGAATAAGACCAAAGCCGGGCTGTGGCAATCGAAT
Found at i:64534147 original size:24 final size:23
Alignment explanation
Indices: 64534120--64534164 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
64534110 TAAAGTAAGA
64534120 TAAATTGAT-TGGTATTTGAGTAGG
1 TAAA-TGATATGG-ATTTGAGTAGG
*
64534144 TAAATGGTATGGATTTGAGTA
1 TAAATGATATGGATTTGAGTA
64534165 ATGAAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (23 bp):
TAAATGATATGGATTTGAGTAGG
Found at i:64535881 original size:47 final size:45
Alignment explanation
Indices: 64535677--64535992 Score: 271
Period size: 49 Copynumber: 6.7 Consensus size: 45
64535667 ATATGTTGCT
* * * *
64535677 GATGCCATGTCCCGGACATGGTCTTACACTGGCTATCATCATCGAGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATC-T-TAGGCC
* * * *
64535726 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTATACGTGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCT-TA-G-GCC
* * * *
64535776 AATGCATGTCCCAGACATGTCTTACACTAGCAC-AACTCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCA-TCTTAGGCC
*
64535820 GATGCATGTCCCAGACACGTCTTACACTGGCTCTCATCGTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATC-TT-AGGCC
* * *
64535867 GATGCATGTGCCAGACATGTCTTACACTGG-TGCTCATTCTCTACGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-CTCA-TCT-TAGGCC
* *
64535914 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATT-GTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTTAG--GCC
64535962 GATGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
64535993 ACACAGGTAA
Statistics
Matches: 225, Mismatches: 27, Indels: 33
0.79 0.09 0.12
Matches are distributed among these distances:
44 33 0.15
45 3 0.01
46 15 0.07
47 60 0.27
48 42 0.19
49 65 0.29
50 7 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTTAGGCC
Found at i:64535966 original size:95 final size:94
Alignment explanation
Indices: 64535726--64535991 Score: 294
Period size: 95 Copynumber: 2.8 Consensus size: 94
64535716 CATCGAGGCT
* * * * **
64535726 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTATACGT-GCTAATGCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC--ATAT-TGTAGCCGATGCATGTCCCAG
64535790 ACATGTCTTACACT--AGCACAACTCTTAGCC
63 ACATGTCTTACACTGGAGCACAACTCTTAGCC
* * *
64535820 GATG-CATGTCCCAGACA-CGTCTTACACTGGCTCTCATCGTTG-AGGCCGATGCATGTGCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATTGTA-GCCGATGCATGTCCCAGA
* * * *
64535882 CATGTCTTACACTGGTGCTC-ATTCTCTACGTC
64 CATGTCTTACACTGGAGCACAACTCT-TA-GCC
*
64535914 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATTGTAGCCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTGTAGCCGATGCATGTCCCAGACA
64535979 TGTCTTACACTGG
66 TGTCTTACACTGG
64535992 CACACAGGTA
Statistics
Matches: 145, Mismatches: 17, Indels: 19
0.80 0.09 0.10
Matches are distributed among these distances:
90 2 0.01
91 29 0.20
92 19 0.13
93 18 0.12
94 10 0.07
95 48 0.33
96 19 0.13
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTGTAGCCGATGCATGTCCCAGACA
TGTCTTACACTGGAGCACAACTCTTAGCC
Found at i:64542909 original size:2 final size:2
Alignment explanation
Indices: 64542904--64542928 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
64542894 CCATATAAAC
64542904 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
64542929 CACATGATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64545019 original size:44 final size:44
Alignment explanation
Indices: 64544898--64545121 Score: 263
Period size: 44 Copynumber: 5.1 Consensus size: 44
64544888 AACGGGTTGT
* * *
64544898 TACAAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGC
* * *
64544942 TACAAATCTTA-CTCCCTGAAGTTGTAGAT-GAGCAAATTAAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCA-ATGGAGCAGATTGAAGC
* *
64544985 TACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTAAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGC
* * * *
64545029 TACAAATCTCATCTCCTTGAAGCTGCAATGGAGCATATTGAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGC
** * * * *
64545073 TATGAACCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGC
64545117 TACAA
1 TACAA
64545122 TTTCTATACC
Statistics
Matches: 152, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
43 37 0.24
44 115 0.76
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (44 bp):
TACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGC
Found at i:64548113 original size:20 final size:20
Alignment explanation
Indices: 64548066--64548113 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
64548056 AGATAGGGGC
*
64548066 ACATGCCCGTGTGGCCTGGG
1 ACATGCCCGTGTGGCCTGGA
*
64548086 ACACGCCCGTGTGGCCTGGA
1 ACATGCCCGTGTGGCCTGGA
64548106 ACATGCCC
1 ACATGCCC
64548114 ATGGGCAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.15, C:0.35, G:0.33, T:0.17
Consensus pattern (20 bp):
ACATGCCCGTGTGGCCTGGA
Found at i:64548613 original size:13 final size:13
Alignment explanation
Indices: 64548595--64548631 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
64548585 AGATAATTAG
64548595 CAAATCATACATA
1 CAAATCATACATA
64548608 CAAATCATACATA
1 CAAATCATACATA
*
64548621 TAAATTCATAC
1 CAAA-TCATAC
64548632 CAAACTGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (13 bp):
CAAATCATACATA
Found at i:64548787 original size:48 final size:48
Alignment explanation
Indices: 64548728--64548883 Score: 179
Period size: 48 Copynumber: 3.1 Consensus size: 48
64548718 TTCATCTCTC
*
64548728 AACCACGTATAATTATTCAATTCACATTTCAAATATAAACACTTCATA
1 AACCACATATAATTATTCAATTCACATTTCAAATATAAACACTTCATA
* * *
64548776 AACCACATATAATTATTCAATTCATATTTCAAATATGAAC-CTTTGATTCATCTCTC
1 AACCACATATAATTATTCAATTCACATTTCAAATATAAACAC-----TTCA----TA
*
64548832 AACCACATATAATTATTCACTTCACATTTCAAATATAAACACTTCATA
1 AACCACATATAATTATTCAATTCACATTTCAAATATAAACACTTCATA
64548880 AACC
1 AACC
64548884 TTTGGTTCAT
Statistics
Matches: 90, Mismatches: 8, Indels: 20
0.76 0.07 0.17
Matches are distributed among these distances:
47 1 0.01
48 42 0.47
52 8 0.09
56 38 0.42
57 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.02, T:0.35
Consensus pattern (48 bp):
AACCACATATAATTATTCAATTCACATTTCAAATATAAACACTTCATA
Found at i:64550132 original size:19 final size:18
Alignment explanation
Indices: 64550099--64550146 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
64550089 ATTTTCCCTT
* *
64550099 TTTCTTTTTCTTTTCTTC-
1 TTTCTTTCTCTTTTC-ACG
64550117 TTTCTTTCTCTCTTTCACG
1 TTTCTTTCTCT-TTTCACG
64550136 TTTCTTTCTCT
1 TTTCTTTCTCT
64550147 GTAACTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (18 bp):
TTTCTTTCTCTTTTCACG
Found at i:64550350 original size:3 final size:3
Alignment explanation
Indices: 64550329--64550387 Score: 95
Period size: 3 Copynumber: 20.0 Consensus size: 3
64550319 TTATCTCCAT
64550329 TAA TAGA TAA -AA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
64550373 TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
64550388 ATAAATAAAT
Statistics
Matches: 53, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
2 4 0.08
3 46 0.87
4 3 0.06
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:64550429 original size:4 final size:4
Alignment explanation
Indices: 64550383--64550410 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
64550373 TAATAATAAT
64550383 AATA AATA AATA AATA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA
64550411 TCTTTAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:64551560 original size:19 final size:19
Alignment explanation
Indices: 64551538--64551580 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
64551528 TTTTTTTTTA
*
64551538 TTTTTTTTAACTTTTGTCT
1 TTTTTTTTAAATTTTGTCT
* *
64551557 TTTTCTTTAAATTTTTTCT
1 TTTTTTTTAAATTTTGTCT
64551576 TTTTT
1 TTTTT
64551581 AAGTTTTATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTTTTTAAATTTTGTCT
Found at i:64551618 original size:13 final size:13
Alignment explanation
Indices: 64551602--64551644 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
64551592 TTTTTCTTAT
*
64551602 TTTATTTTGTTTA
1 TTTATTTTATTTA
64551615 TTTATTTTATTTA
1 TTTATTTTATTTA
* *
64551628 TTTTTTGTTATTAA
1 TTTATT-TTATTTA
64551642 TTT
1 TTT
64551645 TAAAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 17 0.65
14 9 0.35
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.77
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:64551639 original size:10 final size:9
Alignment explanation
Indices: 64551598--64551631 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
64551588 ATATTTTTTC
64551598 TTATTTTAT
1 TTATTTTAT
64551607 TT-TGTTTAT
1 TTAT-TTTAT
64551616 TTATTTTAT
1 TTATTTTAT
64551625 TTATTTT
1 TTATTTT
64551632 TTGTTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.04
9 21 0.91
10 1 0.04
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (9 bp):
TTATTTTAT
Found at i:64551706 original size:23 final size:23
Alignment explanation
Indices: 64551648--64551714 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 23
64551638 TTAATTTTAA
* *
64551648 AAAATTTGAAATGTATA--TTTG
1 AAAATTTTAAATATATATTTTTG
*
64551669 AAATATTTTATAATATATATTTTTT
1 AAA-ATTTTA-AATATATATTTTTG
64551694 AAAATTTTAAATAT-TATTTTT
1 AAAATTTTAAATATATATTTTT
64551715 AAATTATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
21 3 0.08
22 12 0.31
23 12 0.31
24 6 0.15
25 6 0.15
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (23 bp):
AAAATTTTAAATATATATTTTTG
Found at i:64551707 original size:33 final size:32
Alignment explanation
Indices: 64551664--64551817 Score: 139
Period size: 36 Copynumber: 4.5 Consensus size: 32
64551654 TGAAATGTAT
*
64551664 ATTTGAAATAT-TTTATAATATATATTTTTTAAA
1 ATTTTAAATATATTTATAA-AT-TATTTTTTAAA
*
64551697 ATTTTAAATATTATTTTTAAATTATTTTTTAAA
1 ATTTTAAATA-TATTTATAAATTATTTTTTAAA
* *
64551730 ATTTTAAATATATATTTTTGAAATTATTTCTTATAA
1 ATTTT-AA-ATATATTTAT-AAATTATTTTTTA-AA
* *
64551766 ATTTTAAAAATATATTTTTGAAATTAATTTTTATAA
1 ATTTT--AAATATATTTAT-AAATTATTTTTTA-AA
64551802 ATTTTAAATAATATTT
1 ATTTTAAAT-ATATTT
64551818 TTTAAATATT
Statistics
Matches: 108, Mismatches: 5, Indels: 14
0.85 0.04 0.11
Matches are distributed among these distances:
33 25 0.23
34 16 0.15
35 27 0.25
36 37 0.34
37 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.56
Consensus pattern (32 bp):
ATTTTAAATATATTTATAAATTATTTTTTAAA
Done.