Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 223 of 292
Found at i:65227510 original size:2 final size:2
Alignment explanation
Indices: 65227503--65227528 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
65227493 CGTAAGATTA
65227503 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
65227529 GCATTTACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65238472 original size:2 final size:2
Alignment explanation
Indices: 65238467--65238496 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
65238457 GTGTATCTAT
65238467 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
65238497 CTGAAGCTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:65241247 original size:21 final size:22
Alignment explanation
Indices: 65241213--65241254 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
65241203 ATTTTTTATT
*
65241213 TTTTTAATATTTTTTAAAAATA
1 TTTTTAATAATTTTTAAAAATA
65241235 TTTTT-ATAATTTTTAAAAAT
1 TTTTTAATAATTTTTAAAAAT
65241255 TTAAAAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTTAATAATTTTTAAAAATA
Found at i:65241554 original size:2 final size:2
Alignment explanation
Indices: 65241547--65241575 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
65241537 TCTGATATTT
65241547 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
65241576 TAATACAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65244493 original size:30 final size:30
Alignment explanation
Indices: 65244459--65244518 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
65244449 TATTTTATTA
65244459 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
65244489 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
65244519 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:65244620 original size:18 final size:19
Alignment explanation
Indices: 65244594--65244641 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
65244584 TTGTTGAAAA
* *
65244594 ATATTTATTTTGATTTATT
1 ATATATATTTTGATGTATT
*
65244613 TTA-ATATTTTTGATGTATT
1 ATATATA-TTTTGATGTATT
65244632 ATATATATTT
1 ATATATATTT
65244642 AAAAATTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
18 2 0.09
19 18 0.78
20 3 0.13
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (19 bp):
ATATATATTTTGATGTATT
Found at i:65244623 original size:19 final size:20
Alignment explanation
Indices: 65244601--65244641 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
65244591 AAAATATTTA
* *
65244601 TTTTGATTTATTTTA-ATAT
1 TTTTGATGTATTATATATAT
65244620 TTTTGATGTATTATATATAT
1 TTTTGATGTATTATATATAT
65244640 TT
1 TT
65244642 AAAAATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (20 bp):
TTTTGATGTATTATATATAT
Found at i:65247353 original size:19 final size:18
Alignment explanation
Indices: 65247322--65247359 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
65247312 TTCCTAAACA
65247322 TATTCTCCTCTCTTCTTC
1 TATTCTCCTCTCTTCTTC
*
65247340 TATTCTCTCTCTCTTTTTC
1 TATTCTC-CTCTCTTCTTC
65247359 T
1 T
65247360 CTTTTTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.05, C:0.34, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTCTCCTCTCTTCTTC
Found at i:65249718 original size:3 final size:3
Alignment explanation
Indices: 65249704--65249772 Score: 84
Period size: 3 Copynumber: 22.0 Consensus size: 3
65249694 AATGACAATG
*
65249704 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACGTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA
* *
65249754 GAAA ATA ATG ATA ATA ATA
1 -ATA ATA ATA ATA ATA ATA
65249773 TATGAATTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
3 53 0.93
4 1 0.02
5 2 0.04
6 1 0.02
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:65250029 original size:41 final size:39
Alignment explanation
Indices: 65249958--65250036 Score: 88
Period size: 41 Copynumber: 2.0 Consensus size: 39
65249948 TGATATTAAA
* *
65249958 AATATATACATAAAAATATAATATATATATAAATATAATAT
1 AATATATACATAAAAATATAATA-A-AAATATATATAATAT
* *
65249999 AATATATACAT-AATATAGTATTAAAAATATATATAATA
1 AATATATACATAAAAATA-TAATAAAAATATATATAATA
65250037 CATACACACT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
39 12 0.36
40 6 0.18
41 15 0.45
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (39 bp):
AATATATACATAAAAATATAATAAAAATATATATAATAT
Found at i:65250295 original size:24 final size:24
Alignment explanation
Indices: 65250228--65250284 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
65250218 TAGTAATTAT
* * * *
65250228 AATACTAATACTAATAATAAATAC
1 AATAATAATAGTAAAAATAAACAC
*
65250252 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATAGTAAAAATAAACAC
65250276 AATAATAAT
1 AATAATAAT
65250285 CATGAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAATAATAGTAAAAATAAACAC
Found at i:65251012 original size:13 final size:13
Alignment explanation
Indices: 65250996--65251020 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65250986 CATCCGCCGC
65250996 CACCGGCCACCGT
1 CACCGGCCACCGT
65251009 CACCGGCCACCG
1 CACCGGCCACCG
65251021 CGCACGGTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.56, G:0.24, T:0.04
Consensus pattern (13 bp):
CACCGGCCACCGT
Found at i:65251867 original size:44 final size:44
Alignment explanation
Indices: 65251804--65252287 Score: 668
Period size: 44 Copynumber: 11.3 Consensus size: 44
65251794 AGGAACACCG
* ** *
65251804 ATCTGTTATTTTTTATCTGCTCTCTGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
65251848 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
65251892 ATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
65251936 ATC----ATCTTCGATCTGCTCTCCGCCGCTACTGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * * *
65251976 ATCAGCTATCTTCAATCTGCTCTCTGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
** * **
65252020 ATCTGTTATCTTTAATCTGCTCTCTGCCGCTACAGAGATACCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
65252064 ATC----ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCTAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
65252104 ATCTGCTATCTTCGATCTGCTCTCCGCCGCTACAAAGAAGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
65252148 ATCTGTTATCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
65252192 ATC----ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
65252232 ATCTGTTATCTTCGATATGCTCTCCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
65252276 ATCTGTTATCTT
1 ATCTGTTATCTT
65252288 TTTCAAGGAA
Statistics
Matches: 394, Mismatches: 34, Indels: 24
0.87 0.08 0.05
Matches are distributed among these distances:
40 109 0.28
44 285 0.72
ACGTcount: A:0.22, C:0.32, G:0.17, T:0.29
Consensus pattern (44 bp):
ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
Found at i:65251974 original size:84 final size:85
Alignment explanation
Indices: 65251804--65252279 Score: 622
Period size: 84 Copynumber: 5.6 Consensus size: 85
65251794 AGGAACACCG
* ** *
65251804 ATCTGTTATTTTTTATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC---TATCTTCGATCTGCT
65251869 CTCCGCCGCTACAGAGACGCCAA
63 CTCCGCCGCTACAGAGACGCCAA
* *
65251892 ATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGATGCCAAATC-ATCTTCGATCTGCTCTC
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATCTTCGATCTGCTCTC
*
65251956 CGCCGCTACTGAGACGCCAA
66 CGCCGCTACAGAGACGCCAA
* * * * **
65251976 ATCAGCTATCTTCAATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTTAATCTGCT
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC---TATCTTCGATCTGCT
* **
65252041 CTCTGCCGCTACAGAGATACCAA
63 CTCCGCCGCTACAGAGACGCCAA
*
65252064 ATC----ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCTAAATCTGCTATCTTCGATCTGCT
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAA--T-CTATCTTCGATCTGCT
* *
65252125 CTCCGCCGCTACAAAGAAGCCAA
63 CTCCGCCGCTACAGAGACGCCAA
* *
65252148 ATCTGTTATCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC-ATCTTCGATCTGCTCTC
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATCTTCGATCTGCTCTC
65252212 CGCCGCTACAGAGACGCCAA
66 CGCCGCTACAGAGACGCCAA
* *
65252232 ATCTGTTATCTTCGATATGCTCTCCGCCGCTACAGAGATGCCAAATCT
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCT
65252280 GTTATCTTTT
Statistics
Matches: 341, Mismatches: 35, Indels: 27
0.85 0.09 0.07
Matches are distributed among these distances:
84 227 0.67
85 1 0.00
86 2 0.01
87 1 0.00
88 110 0.32
ACGTcount: A:0.22, C:0.32, G:0.17, T:0.29
Consensus pattern (85 bp):
ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATCTTCGATCTGCTCTC
CGCCGCTACAGAGACGCCAA
Found at i:65252049 original size:128 final size:128
Alignment explanation
Indices: 65251818--65252288 Score: 789
Period size: 128 Copynumber: 3.7 Consensus size: 128
65251808 GTTATTTTTT
* *
65251818 ATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAG
1 ATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTACAG
* *
65251883 AGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGATGCCAAATCATCTTCG
66 AGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCG
* * * *
65251946 ATCTGCTCTCCGCCGCTACTGAGACGCCAAATCAGCTATCTTCAATCTGCTCTCTGCCGCTACAG
1 ATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTACAG
* * *
65252011 AGACGCCAAATCTGTTATCTTTAATCTGCTCTCTGCCGCTACAGAGATACCAAATCATCTTCG
66 AGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCG
* *
65252074 ATCTGCTCTCCGCCGCTACAGAGACGCTAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTACAA
1 ATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTACAG
*
65252139 AGAAGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCG
66 AGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCG
* *
65252202 ATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATATGCTCTCCGCCGCTACAG
1 ATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTACAG
*
65252267 AGATGCCAAATCTGTTATCTTT
66 AGACGCCAAATCTGTTATCTTT
65252289 TTCAAGGAAG
Statistics
Matches: 317, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
128 317 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.28
Consensus pattern (128 bp):
ATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTACAG
AGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCG
Found at i:65264657 original size:3 final size:3
Alignment explanation
Indices: 65264649--65264695 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
65264639 AATGACAATG
* *
65264649 ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA AAA ATA ATG ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
65264696 TATGAATTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:65264683 original size:23 final size:23
Alignment explanation
Indices: 65264649--65264697 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
65264639 AATGACAATG
*
65264649 ATAATAATAATAATAATAATAAT
1 ATAATAAAAATAATAATAATAAT
*
65264672 ATAATAAAAATAATGATAATAAT
1 ATAATAAAAATAATAATAATAAT
65264695 ATA
1 ATA
65264698 TGAATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
ATAATAAAAATAATAATAATAAT
Found at i:65264710 original size:15 final size:13
Alignment explanation
Indices: 65264646--65264713 Score: 50
Period size: 12 Copynumber: 5.2 Consensus size: 13
65264636 GGCAATGACA
*
65264646 ATGATAATAATA-
1 ATGATAAAAATAT
* *
65264658 ATAATAATAATAAT
1 ATGATAAAAAT-AT
*
65264672 ATAATAAAAATA-
1 ATGATAAAAATAT
*
65264684 ATGATAATAATAT
1 ATGATAAAAATAT
65264697 ATGAATTAAAAATAT
1 ATG-A-TAAAAATAT
65264712 AT
1 AT
65264714 ATATATATAT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
12 20 0.43
13 5 0.11
14 11 0.24
15 10 0.22
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (13 bp):
ATGATAAAAATAT
Found at i:65264713 original size:2 final size:2
Alignment explanation
Indices: 65264708--65264740 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
65264698 TGAATTAAAA
65264708 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
65264741 CATACGTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:65264903 original size:14 final size:14
Alignment explanation
Indices: 65264886--65264925 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
65264876 AATGTGATAT
65264886 TAAAAATATATACA
1 TAAAAATATATACA
*
65264900 TAAAAATATATATA
1 TAAAAATATATACA
* *
65264914 TATATATATATA
1 TAAAAATATATA
65264926 TAATATAGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (14 bp):
TAAAAATATATACA
Found at i:65264910 original size:2 final size:2
Alignment explanation
Indices: 65264891--65264950 Score: 52
Period size: 2 Copynumber: 30.5 Consensus size: 2
65264881 GATATTAAAA
* * *
65264891 AT AT AT AC AT AA AA AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
65264932 AGT AT -T AA AA AT AT AT AT A
1 A-T AT AT AT AT AT AT AT AT A
65264951 ATACATACAC
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
1 2 0.04
2 45 0.92
3 2 0.04
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (2 bp):
AT
Found at i:65265031 original size:2 final size:2
Alignment explanation
Indices: 65265014--65265049 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
65265004 TACTTCATAA
* *
65265014 AT AT AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65265050 GTTAAAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:65265216 original size:24 final size:24
Alignment explanation
Indices: 65265149--65265205 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
65265139 TAGTAATTAT
* * * *
65265149 AATACTAATACTAATAATAAATAC
1 AATAATAATAGTAAAAATAAACAC
*
65265173 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATAGTAAAAATAAACAC
65265197 AATAATAAT
1 AATAATAAT
65265206 CATGAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAATAATAGTAAAAATAAACAC
Found at i:65268155 original size:7 final size:7
Alignment explanation
Indices: 65268143--65268197 Score: 50
Period size: 7 Copynumber: 8.4 Consensus size: 7
65268133 GTGATATTAT
65268143 TGATATA
1 TGATATA
65268150 TGATATA
1 TGATATA
65268157 T--TATA
1 TGATATA
65268162 TGA-ATTA
1 TGATA-TA
65268169 TGATAT-
1 TGATATA
65268175 TGGATATA
1 T-GATATA
65268183 TG-TATA
1 TGATATA
65268189 TG-TATA
1 TGATATA
65268195 TGA
1 TGA
65268198 ATTGATAACG
Statistics
Matches: 41, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
5 5 0.12
6 14 0.34
7 20 0.49
8 2 0.05
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.45
Consensus pattern (7 bp):
TGATATA
Found at i:65268173 original size:26 final size:28
Alignment explanation
Indices: 65268138--65268190 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 28
65268128 AAAGTGTGAT
65268138 ATTATTGATATAT-GATATAT-TATATGA
1 ATTATTGATAT-TGGATATATGTATATGA
65268165 ATTA-TGATATTGGATATATGTATATG
1 ATTATTGATATTGGATATATGTATATG
65268191 TATATGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 13 0.54
27 10 0.42
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (28 bp):
ATTATTGATATTGGATATATGTATATGA
Found at i:65277245 original size:195 final size:194
Alignment explanation
Indices: 65276913--65277304 Score: 651
Period size: 195 Copynumber: 2.0 Consensus size: 194
65276903 CTTAGCTCAG
*
65276913 TTGGTAGAGCGGAGGACTGTAGTGGTAAAAGTCAGAGCAATCCTTAGGTCGCTGGTTCGAATCCG
1 TTGGTAGAGCGGAGGACTGTAGTGGTAAAAGTCAGAGCAATCCTTAGGTCGCTGGTTCGAATCCA
* * * *
65276978 GCAGGTCGGAATTTTTTTAAACTATACTTTTATAATTGGGTTAATATGCGCTTTGATATCTTAAT
66 GCAGGTCAGAACTTTTTTAAACTATACTTTTATAATTGGGTTAATATACGCTTTGATATCGTAAT
* * * *
65277043 TTTGCTTCAATGTTCAATTTAGCAACCGGGTCTTTTTTTTTTTTTTATCAATTTGGTACATATGT
131 TTTGCTTCAATGTTCAATTTAGCAACCAGGTC-TCTTTTTATTATTATCAATTTGGTACATATGT
* *
65277108 TTGGTAGAGCGGAGGACTGTAGTGGTAAATGTCAGAGCAATCGTTAGGTCGCTGGTTCGAATCCA
1 TTGGTAGAGCGGAGGACTGTAGTGGTAAAAGTCAGAGCAATCCTTAGGTCGCTGGTTCGAATCCA
*
65277173 GCAGGTCAGAACCTTTTTT-AACTATACTTTTATAATTGGGTTAATATACTCTTTGATATCGTAA
66 GCAGGTCAGAA-CTTTTTTAAACTATACTTTTATAATTGGGTTAATATACGCTTTGATATCGTAA
65277237 TTTTGCTTCAATGTTCAATTTAGCAACCAGGTCTCTTTTTATTATTATCAATTTGGTACATATGT
130 TTTTGCTTCAATGTTCAATTTAGCAACCAGGTCTCTTTTTATTATTATCAATTTGGTACATATGT
65277302 TTG
1 TTG
65277305 ATTTCAATAT
Statistics
Matches: 184, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
194 32 0.17
195 146 0.79
196 6 0.03
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.40
Consensus pattern (194 bp):
TTGGTAGAGCGGAGGACTGTAGTGGTAAAAGTCAGAGCAATCCTTAGGTCGCTGGTTCGAATCCA
GCAGGTCAGAACTTTTTTAAACTATACTTTTATAATTGGGTTAATATACGCTTTGATATCGTAAT
TTTGCTTCAATGTTCAATTTAGCAACCAGGTCTCTTTTTATTATTATCAATTTGGTACATATGT
Found at i:65281344 original size:2 final size:2
Alignment explanation
Indices: 65281337--65281367 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
65281327 ATTTTATTAT
65281337 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
65281368 TCGTACGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65282402 original size:130 final size:130
Alignment explanation
Indices: 65282148--65282534 Score: 456
Period size: 130 Copynumber: 2.9 Consensus size: 130
65282138 ATAATTATTC
*
65282148 TTCTAAAAATCCTTTAAAACGAAGGCAATGTTCGATATTTGGCAATTCGCGGAATTGTGCCCTAA
1 TTCT-AAAATCCTTT-AAACGAAGGCAATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAA
* * *
65282213 CGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCATG
64 CGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAGGTCCCTTTAGAAATTCACCCATG
65282278 TCT
129 T-T
* * *
65282281 TT-TAAAATCCTTTAAACGAAGGCAATGTTCGATATTTGACAATTTGCAGAATCGTGCCCTAACG
1 TTCTAAAATCCTTTAAACGAAGGCAATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACG
* * * **
65282345 TGCTGGGTTGTAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTTGAAATTCACTTATGTT
66 TGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAGGTCCCTTTAGAAATTCACCCATGTT
* * * * * * *
65282410 TTCTAAAAACTCTTCAAAACGAAGGTAATATTCGATGTTTGGCAATTCGGGGAATCGTGCCCTAT
1 TTCTAAAATC-CTT-TAAACGAAGGCAATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAA
* * * * * * *
65282475 CGTGCTGGGTAGCGATTTC-CTGCTTGGC-CAAAATGATCGAAGATTCCTTTAGAATTTCAC
64 CGTGCTGGGTTGCAATTTCTC-G-TTTGCTCAAAATAATCGAAGGTCCCTTTAGAAATTCAC
65282535 TCATACTCTC
Statistics
Matches: 217, Mismatches: 32, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
129 3 0.01
130 109 0.50
131 14 0.06
132 86 0.40
133 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (130 bp):
TTCTAAAATCCTTTAAACGAAGGCAATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACG
TGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAGGTCCCTTTAGAAATTCACCCATGTT
Found at i:65284545 original size:2 final size:2
Alignment explanation
Indices: 65284538--65284568 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
65284528 GTGTATGATG
*
65284538 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
65284569 CAAATGTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:65284693 original size:20 final size:20
Alignment explanation
Indices: 65284656--65284712 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
65284646 ATTTATCATT
*
65284656 ATTATTATTCTATCAAATTATA
1 ATTATTA-T-TATTAAATTATA
*
65284678 ATT-TATATTATTAAATTATG
1 ATTAT-TATTATTAAATTATA
65284698 ATTATTATTATTAAA
1 ATTATTATTATTAAA
65284713 AATAAATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
20 23 0.74
21 3 0.10
22 5 0.16
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (20 bp):
ATTATTATTATTAAATTATA
Found at i:65285003 original size:13 final size:14
Alignment explanation
Indices: 65284985--65285031 Score: 62
Period size: 13 Copynumber: 3.5 Consensus size: 14
65284975 TTATTAAGTT
65284985 AATAAAATAAAAG-
1 AATAAAATAAAAGA
*
65284998 AATAAAATAAATGA
1 AATAAAATAAAAGA
65285012 AATAAAAT-AAAGA
1 AATAAAATAAAAGA
*
65285025 AACAAAA
1 AATAAAA
65285032 CAAAGTAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 22 0.73
14 8 0.27
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (14 bp):
AATAAAATAAAAGA
Found at i:65285875 original size:40 final size:39
Alignment explanation
Indices: 65285812--65285898 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 39
65285802 AATTATAGAA
* *
65285812 TACTGAATATTGTTTGGAATACTGAATTGAATTGTGAAGT
1 TACTGAATATTGTTTGG-ATACTGAATTGAACTGTGAAAT
*
65285852 TACTGAATATTGTTATGTG-TACTGCATTGAACTGTGAAAT
1 TACTGAATATTGTT-TG-GATACTGAATTGAACTGTGAAAT
*
65285892 AACTGAA
1 TACTGAA
65285899 GTAATGAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 38 0.93
41 2 0.05
42 1 0.02
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (39 bp):
TACTGAATATTGTTTGGATACTGAATTGAACTGTGAAAT
Found at i:65286141 original size:39 final size:39
Alignment explanation
Indices: 65286089--65286196 Score: 101
Period size: 45 Copynumber: 2.6 Consensus size: 39
65286079 CAGGCACTTA
* * *
65286089 TGTGCCGACTACTGTTACTGTTACCGATTC-GACACTTTG
1 TGTGTCGAATACTGTTACTGTTACAGATTCAG-CACTTTG
65286128 TGTGTCGAATACTGTTACCGTTACTGTTACAGATTCAGCACTTTG
1 TGTGTCGAATAC---T---GTTACTGTTACAGATTCAGCACTTTG
* *
65286173 TGAGTTGAATACTGTTACTGTTAC
1 TGTGTCGAATACTGTTACTGTTAC
65286197 TGTTACTGCT
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
39 21 0.37
42 2 0.04
45 33 0.58
46 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.38
Consensus pattern (39 bp):
TGTGTCGAATACTGTTACTGTTACAGATTCAGCACTTTG
Found at i:65286170 original size:45 final size:45
Alignment explanation
Indices: 65286102--65286202 Score: 150
Period size: 45 Copynumber: 2.2 Consensus size: 45
65286092 GCCGACTACT
* *
65286102 GTTACTGTTACCGATTCGACACTTTGTGTGTCGAATACTGTTACC
1 GTTACTGTTACAGATTCGACACTTTGTGAGTCGAATACTGTTACC
* *
65286147 GTTACTGTTACAGATTC-AGCACTTTGTGAGTTGAATACTGTTACT
1 GTTACTGTTACAGATTCGA-CACTTTGTGAGTCGAATACTGTTACC
65286192 GTTACTGTTAC
1 GTTACTGTTAC
65286203 TGCTACCGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 1 0.02
45 50 0.98
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.40
Consensus pattern (45 bp):
GTTACTGTTACAGATTCGACACTTTGTGAGTCGAATACTGTTACC
Found at i:65286193 original size:6 final size:6
Alignment explanation
Indices: 65286182--65286225 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
65286172 GTGAGTTGAA
* *
65286182 TACTGT TACTGT TACTGT TACTGC TACCGT TACTGAT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTGT T
65286226 TAGGTACTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.45
Consensus pattern (6 bp):
TACTGT
Found at i:65286980 original size:16 final size:17
Alignment explanation
Indices: 65286949--65286981 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
65286939 TTCATAAGTA
65286949 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
65286966 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
65286982 GTTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:65287325 original size:46 final size:46
Alignment explanation
Indices: 65287260--65287404 Score: 193
Period size: 46 Copynumber: 3.2 Consensus size: 46
65287250 TTATCTTTGA
* * * * *
65287260 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATAT
* *
65287306 CATGTTGCCATGGTATCTTTCAACCATTGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATAT
*
65287352 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATAT
*
65287398 CACGTTG
1 CATGTTG
65287405 GTCTTATTCA
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 5 0.06
46 84 0.94
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.45
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATAT
Found at i:65287426 original size:117 final size:117
Alignment explanation
Indices: 65287286--65287502 Score: 319
Period size: 117 Copynumber: 1.9 Consensus size: 117
65287276 CTTTCAACTA
* * * * ** * *
65287286 TGGTCTTACTCATTTTCTATCATGTTGCCATGGTATCTTTCAACCATTGTCTTATTCTTTTCATG
1 TGGTCTTACTCATTTTCTATCATGCTACCATGGCATCTTTCAACCATGGTCTTACACATTTCATA
*
65287351 TCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
66 TCATGTAGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
* *
65287403 TGGTCTTATTCA-TTTCATGTCATGCTACCATGGCATCTTTCAACCATGGTCTTACACATTTCAT
1 TGGTCTTACTCATTTTC-TATCATGCTACCATGGCATCTTTCAACCATGGTCTTACACATTTCAT
65287467 ATCATGTAGCCATGGTATCTTTCAACCATGGTCTTA
65 ATCATGTAGCCATGGTATCTTTCAACCATGGTCTTA
65287503 CACATTTCAT
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
116 4 0.05
117 84 0.95
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (117 bp):
TGGTCTTACTCATTTTCTATCATGCTACCATGGCATCTTTCAACCATGGTCTTACACATTTCATA
TCATGTAGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
Found at i:65287465 original size:71 final size:71
Alignment explanation
Indices: 65287334--65287466 Score: 203
Period size: 71 Copynumber: 1.9 Consensus size: 71
65287324 TTCAACCATT
* * * * ** *
65287334 GTCTTATTCTTTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTC
1 GTCTTATTCATTTCATGTCATGCTACCATGGCATCTTTCAACCATGGTCTTACACATTTCATGTC
65287399 ACGTTG
66 ACGTTG
65287405 GTCTTATTCATTTCATGTCATGCTACCATGGCATCTTTCAACCATGGTCTTACACATTTCAT
1 GTCTTATTCATTTCATGTCATGCTACCATGGCATCTTTCAACCATGGTCTTACACATTTCAT
65287467 ATCATGTAGC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 55 1.00
ACGTcount: A:0.19, C:0.23, G:0.14, T:0.44
Consensus pattern (71 bp):
GTCTTATTCATTTCATGTCATGCTACCATGGCATCTTTCAACCATGGTCTTACACATTTCATGTC
ACGTTG
Found at i:65287559 original size:46 final size:46
Alignment explanation
Indices: 65287403--65287560 Score: 244
Period size: 46 Copynumber: 3.4 Consensus size: 46
65287393 CATGTCACGT
** * * * *
65287403 TGGTCTTATTCATTTCATGTCATGCTACCATGGCATCTTTCAACCA
1 TGGTCTTACACATTTCATTTCATGTTGCCATGGTATCTTTCAACCA
* *
65287449 TGGTCTTACACATTTCATATCATGTAGCCATGGTATCTTTCAACCA
1 TGGTCTTACACATTTCATTTCATGTTGCCATGGTATCTTTCAACCA
65287495 TGGTCTTACACATTTCATTTCATGTTGCCATGGTATCTTTCAACCA
1 TGGTCTTACACATTTCATTTCATGTTGCCATGGTATCTTTCAACCA
65287541 TGGTCTTACACATTTCATTT
1 TGGTCTTACACATTTCATTT
65287561 TAGAAAGCAC
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 103 1.00
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.41
Consensus pattern (46 bp):
TGGTCTTACACATTTCATTTCATGTTGCCATGGTATCTTTCAACCA
Found at i:65289392 original size:11 final size:11
Alignment explanation
Indices: 65289376--65289423 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
65289366 CTTTATATAC
65289376 TAATAAAATAA
1 TAATAAAATAA
*
65289387 TAATAAAATATCT
1 TAATAAAATA--A
* *
65289400 TATTAAAATAT
1 TAATAAAATAA
65289411 TAATAAAATAA
1 TAATAAAATAA
65289422 TA
1 TA
65289424 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:65290417 original size:22 final size:22
Alignment explanation
Indices: 65290386--65290428 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
65290376 TTATGTAAAA
65290386 ACAAGAAGAAATGCTGTCGAAG
1 ACAAGAAGAAATGCTGTCGAAG
*
65290408 ACAAGCAGAAATGCTGTCGAA
1 ACAAGAAGAAATGCTGTCGAA
65290429 ATTTATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.16, G:0.26, T:0.14
Consensus pattern (22 bp):
ACAAGAAGAAATGCTGTCGAAG
Found at i:65307181 original size:8 final size:8
Alignment explanation
Indices: 65307163--65307200 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
65307153 TTTAAGGAAT
65307163 TAATAATTA
1 TAATAA-TA
65307172 TAATAATA
1 TAATAATA
*
65307180 TAATAGT-
1 TAATAATA
65307187 TAATAATA
1 TAATAATA
65307195 TAATAA
1 TAATAA
65307201 AAGAAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
7 6 0.23
8 14 0.54
9 6 0.23
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (8 bp):
TAATAATA
Found at i:65307208 original size:24 final size:24
Alignment explanation
Indices: 65307162--65307208 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
65307152 ATTTAAGGAA
* *
65307162 TTAATAATTATAATAATATAATAG
1 TTAATAATTATAATAAAAAAATAG
65307186 TTAATAA-TATAATAAAAGAAATA
1 TTAATAATTATAATAAAA-AAATA
65307209 ATAAAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (24 bp):
TTAATAATTATAATAAAAAAATAG
Found at i:65307209 original size:12 final size:12
Alignment explanation
Indices: 65307194--65307218 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
65307184 AGTTAATAAT
65307194 ATAATAAAAGAA
1 ATAATAAAAGAA
65307206 ATAATAAAAGAA
1 ATAATAAAAGAA
65307218 A
1 A
65307219 AAAGAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
ATAATAAAAGAA
Found at i:65307223 original size:19 final size:20
Alignment explanation
Indices: 65307199--65307245 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
65307189 ATAATATAAT
*
65307199 AAAAGAAATAATA-AAAGAA
1 AAAAGAAATAAAATAAAGAA
65307218 AAAAGAAATAAAATAAAGAA
1 AAAAGAAATAAAATAAAGAA
*
65307238 AAAGGAAA
1 AAAAGAAA
65307246 GAAAGAAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.09
Consensus pattern (20 bp):
AAAAGAAATAAAATAAAGAA
Found at i:65307229 original size:28 final size:28
Alignment explanation
Indices: 65307196--65307252 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
65307186 TTAATAATAT
*
65307196 AATAAAAGAAATAATAAAAGAAA-AAAGA
1 AATAAAAGAAAGAA-AAAAGAAAGAAAGA
* *
65307224 AATAAAATAAAGAAAAAGGAAAGAAAGA
1 AATAAAAGAAAGAAAAAAGAAAGAAAGA
65307252 A
1 A
65307253 GGACAAAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (28 bp):
AATAAAAGAAAGAAAAAAGAAAGAAAGA
Found at i:65308092 original size:20 final size:20
Alignment explanation
Indices: 65308067--65308114 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
65308057 ATTCTGACTG
65308067 TGTGTCGATGAGACACTATA
1 TGTGTCGATGAGACACTATA
65308087 TGTGTCGATGAGACACTATA
1 TGTGTCGATGAGACACTATA
65308107 TGTGTCGA
1 TGTGTCGA
65308115 ATACTGTGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (20 bp):
TGTGTCGATGAGACACTATA
Found at i:65309225 original size:20 final size:20
Alignment explanation
Indices: 65309200--65309246 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
65309190 CCCACGGGCT
65309200 AGCCACACGGCCATGTCCCA
1 AGCCACACGGCCATGTCCCA
*
65309220 AGCCACACGGCCATGTCTCA
1 AGCCACACGGCCATGTCCCA
65309240 AGCCACA
1 AGCCACA
65309247 TGGGCGTGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.28, C:0.43, G:0.19, T:0.11
Consensus pattern (20 bp):
AGCCACACGGCCATGTCCCA
Found at i:65312537 original size:40 final size:39
Alignment explanation
Indices: 65312460--65312545 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
65312450 TAACGACTTA
* *
65312460 TCGGCTAAAATGGCACTCAGTGTGTAGTTCGAAATAGCT
1 TCGGCTAAAATGGCACTCAGTGTGCAATTCGAAATAGCT
* * *
65312499 TCGGCTAAAAGTGGCACTTAGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTCAGTGTGCAATTCGAAATAGCT
*
65312539 TTGGCTA
1 TCGGCTA
65312546 TATATATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 10 0.25
40 30 0.75
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTCAGTGTGCAATTCGAAATAGCT
Found at i:65314220 original size:18 final size:18
Alignment explanation
Indices: 65314193--65314229 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
65314183 TGACACAGCC
*
65314193 ATATGCCTCAGCTGTGTG
1 ATATGCCTCAACTGTGTG
*
65314211 ATATGTCTCAACTGTGTG
1 ATATGCCTCAACTGTGTG
65314229 A
1 A
65314230 GGGACACGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (18 bp):
ATATGCCTCAACTGTGTG
Found at i:65324838 original size:26 final size:27
Alignment explanation
Indices: 65324808--65324870 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 27
65324798 CTTTGTTAAA
*
65324808 TTTCTTGAAAGTTAACAAATCAGAAGC
1 TTTCTTCAAAGTTAACAAATCAGAAGC
* *
65324835 TTCTCTTTCAAATTTAACTAATCAGAAGC
1 TT-TC-TTCAAAGTTAACAAATCAGAAGC
65324864 TTCTCTT
1 TT-TCTT
65324871 TCAACTCCTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 2 0.06
28 4 0.13
29 25 0.81
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (27 bp):
TTTCTTCAAAGTTAACAAATCAGAAGC
Found at i:65324851 original size:29 final size:29
Alignment explanation
Indices: 65324819--65324874 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
65324809 TTCTTGAAAG
65324819 TTAACAAATCAGAAGCTTCTCTTTCAAAT
1 TTAACAAATCAGAAGCTTCTCTTTCAAAT
*
65324848 TTAACTAATCAGAAGCTTCTCTTTCAA
1 TTAACAAATCAGAAGCTTCTCTTTCAA
65324875 CTCCTCAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (29 bp):
TTAACAAATCAGAAGCTTCTCTTTCAAAT
Found at i:65330825 original size:20 final size:19
Alignment explanation
Indices: 65330800--65330845 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
65330790 TTTTGACGAA
*
65330800 TTTTAAGAAACCTTTCTATG
1 TTTTAAGAAACATTT-TATG
*
65330820 TTTTAAGTAACATTTTATG
1 TTTTAAGAAACATTTTATG
*
65330839 TATTAAG
1 TTTTAAG
65330846 TAATTCTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.48
Consensus pattern (19 bp):
TTTTAAGAAACATTTTATG
Found at i:65330844 original size:19 final size:20
Alignment explanation
Indices: 65330802--65330848 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
65330792 TTGACGAATT
* * *
65330802 TTAAGAAACCTTTCTATGTT
1 TTAAGTAACATTTCTATGTA
65330822 TTAAGTAACATTT-TATGTA
1 TTAAGTAACATTTCTATGTA
65330841 TTAAGTAA
1 TTAAGTAA
65330849 TTCTTCAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.45
Consensus pattern (20 bp):
TTAAGTAACATTTCTATGTA
Found at i:65336073 original size:5 final size:5
Alignment explanation
Indices: 65336065--65336089 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
65336055 AAGGGAAATT
65336065 TGGGC TGGGC TGGGC TGGGC TGGGC
1 TGGGC TGGGC TGGGC TGGGC TGGGC
65336090 AGTAGAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.60, T:0.20
Consensus pattern (5 bp):
TGGGC
Found at i:65346667 original size:23 final size:22
Alignment explanation
Indices: 65346625--65346667 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
65346615 ATAAAAGTAA
*
65346625 AAAAATTAAATATATATTTTAG
1 AAAAATTAAATAAATATTTTAG
*
65346647 AAAAATTACAATAAATTTTTT
1 AAAAATTA-AATAAATATTTT
65346668 TTTTATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
AAAAATTAAATAAATATTTTAG
Found at i:65346880 original size:16 final size:16
Alignment explanation
Indices: 65346841--65346891 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
65346831 ATAGTTTTTT
65346841 AAAAATAATTTTA-AA
1 AAAAATAATTTTATAA
* *
65346856 TATATATAATTTTATAA
1 -AAAAATAATTTTATAA
65346873 AAAAATAAAATTTTATAA
1 AAAAAT--AATTTTATAA
65346891 A
1 A
65346892 TAACACTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 15 0.54
17 2 0.07
18 11 0.39
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AAAAATAATTTTATAA
Found at i:65349116 original size:16 final size:16
Alignment explanation
Indices: 65349097--65349127 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65349087 ATATTAATTT
*
65349097 TATTTAATCTTAAAAA
1 TATTTAATATTAAAAA
65349113 TATTTAATATTAAAA
1 TATTTAATATTAAAA
65349128 CAATACAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:65357640 original size:4 final size:4
Alignment explanation
Indices: 65357631--65357657 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
65357621 TTAAAAGATA
65357631 TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TAT
65357658 ATATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.00, T:0.52
Consensus pattern (4 bp):
TATC
Found at i:65357662 original size:2 final size:2
Alignment explanation
Indices: 65357655--65357686 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
65357645 TCTATCTATC
65357655 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
65357687 AGAAATGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:65359789 original size:35 final size:35
Alignment explanation
Indices: 65359670--65359800 Score: 129
Period size: 35 Copynumber: 3.6 Consensus size: 35
65359660 CCTCATTGAA
* * * *
65359670 ATACCATACCTACATTTTACAACTCGGTTTGGGA-A
1 ATACCATACCTACATTTCACAACTCAGTAT-GGATG
* ** *
65359705 ATGCCATACCTACATTTCTTAACTGAGTATGGATTTG
1 ATACCATACCTACATTTCACAACTCAGTATGGA--TG
65359742 ATAATACCATACCTACATTTCACAACTCAGTATGGATG
1 ---ATACCATACCTACATTTCACAACTCAGTATGGATG
65359780 ATACCATACCTACATTTCACA
1 ATACCATACCTACATTTCACA
65359801 CTTTGCCATG
Statistics
Matches: 78, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
34 3 0.04
35 44 0.56
38 2 0.03
40 29 0.37
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:65364731 original size:34 final size:34
Alignment explanation
Indices: 65364685--65364751 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
65364675 CCCTGACGAT
** *
65364685 GATCCTTAATCTATCATGGGCTAACTGGGTCCTC
1 GATCCTTAATCTATCATAAGCTAACTAGGTCCTC
*
65364719 GATCCTTGATCTATCATAAGCTAACTAGGTCCT
1 GATCCTTAATCTATCATAAGCTAACTAGGTCCT
65364752 TCCTCAAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (34 bp):
GATCCTTAATCTATCATAAGCTAACTAGGTCCTC
Found at i:65367956 original size:13 final size:13
Alignment explanation
Indices: 65367938--65367963 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65367928 GCATCTAACA
65367938 TTTTTATTTTTAT
1 TTTTTATTTTTAT
65367951 TTTTTATTTTTAT
1 TTTTTATTTTTAT
65367964 CACTTTATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:65372590 original size:6 final size:6
Alignment explanation
Indices: 65372579--65372604 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
65372569 TTAAATAATA
65372579 ATTTAT ATTTAT ATTTAT ATTTAT AT
1 ATTTAT ATTTAT ATTTAT ATTTAT AT
65372605 CAAAACACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
ATTTAT
Found at i:65372746 original size:34 final size:34
Alignment explanation
Indices: 65372707--65372771 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
65372697 AAAATTTATA
*
65372707 TTTAATATAATAA-ATTATTTATTATATTTATTTT
1 TTTAATATAATAAGA-CATTTATTATATTTATTTT
* *
65372741 TTTAATATAGTAAGACATTTTTTATATTTAT
1 TTTAATATAATAAGACATTTATTATATTTAT
65372772 AGTGGTGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 26 0.96
35 1 0.04
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (34 bp):
TTTAATATAATAAGACATTTATTATATTTATTTT
Found at i:65376440 original size:5 final size:6
Alignment explanation
Indices: 65376423--65376447 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
65376413 CATTTTACAG
65376423 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
65376448 CTATATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:65377538 original size:3 final size:3
Alignment explanation
Indices: 65377523--65377571 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
65377513 ATATTGTGCT
* *
65377523 TTA TTA ATA TTA TTA TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
65377571 T
1 T
65377572 AACTTGATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:65377769 original size:21 final size:18
Alignment explanation
Indices: 65377707--65377787 Score: 80
Period size: 18 Copynumber: 4.5 Consensus size: 18
65377697 TTTTTGTAAT
* *
65377707 TATATATATTTATGATGT-
1 TATATATTTTTAT-ATTTA
65377725 TATA-ATTTTTATATTTA
1 TATATATTTTTATATTTA
65377742 -A-ATATTTTTATAAATTTA
1 TATATATTTTTAT--ATTTA
65377760 TATTATATTTTTATATTTA
1 TA-TATATTTTTATATTTA
65377779 TATATATTT
1 TATATATTT
65377788 CAAAATAACA
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
15 1 0.02
16 12 0.22
17 7 0.13
18 16 0.30
19 8 0.15
21 10 0.19
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
TATATATTTTTATATTTA
Found at i:65386530 original size:27 final size:27
Alignment explanation
Indices: 65386500--65386554 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
65386490 TCAATTTTGT
65386500 ACTTGTATTTGAGCCTGAGGATAAATA
1 ACTTGTATTTGAGCCTGAGGATAAATA
65386527 ACTTGTATTTGAGCCTGAGGATAAATA
1 ACTTGTATTTGAGCCTGAGGATAAATA
65386554 A
1 A
65386555 TCGAGCATGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33
Consensus pattern (27 bp):
ACTTGTATTTGAGCCTGAGGATAAATA
Found at i:65387823 original size:64 final size:65
Alignment explanation
Indices: 65387699--65387823 Score: 175
Period size: 64 Copynumber: 1.9 Consensus size: 65
65387689 CAAACATAAA
65387699 CATGCAATCATCTAAAAAATAAGAAGAGACATAACAGCGAAAACTTAAAAAGACCATAAAAATCA
1 CATGCAATCATCTAAAAAATAAGAAGAGA-ATAACAGCGAAAACTTAAAAAGACCATAAAAATCA
65387764 G
65 G
* * *
65387765 CATGCAATTATCTAAAAAAATAAGAAGAG-ATAGA-AGTG-AAGCTTAAAAAGACCATAAAA
1 CATGCAATCATCT-AAAAAATAAGAAGAGAATA-ACAGCGAAAACTTAAAAAGACCATAAAA
65387824 TTAACATCTT
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
64 20 0.37
65 6 0.11
66 13 0.24
67 15 0.28
ACGTcount: A:0.56, C:0.14, G:0.14, T:0.17
Consensus pattern (65 bp):
CATGCAATCATCTAAAAAATAAGAAGAGAATAACAGCGAAAACTTAAAAAGACCATAAAAATCAG
Found at i:65387912 original size:80 final size:77
Alignment explanation
Indices: 65387781--65387929 Score: 208
Period size: 80 Copynumber: 1.9 Consensus size: 77
65387771 ATTATCTAAA
* ** *
65387781 AAAATAAGAAGAGATAGAAGTGAAGCTTAAAAAGACCATAAAATTAACATCTTTCTCAAACACAA
1 AAAATAAGAAGAGATAGAAGTGAAACTTAAAAAGACCATAAAACCAACATCTTCCTCAAACACAA
65387846 ACATGTAATCAG
66 ACATGTAATCAG
* *
65387858 AAAATAAGAAGAGACATAGAAGTGAAACTTAAAAAAGACCATAAAACCAGCATCTTCCTCGAACA
1 AAAATAAGAAGAG--ATAGAAGTGAAACTT-AAAAAGACCATAAAACCAACATCTTCCTCAAACA
*
65387923 CGAACAT
63 CAAACAT
65387930 ACAATTATCT
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
77 13 0.21
79 14 0.23
80 35 0.56
ACGTcount: A:0.52, C:0.17, G:0.13, T:0.18
Consensus pattern (77 bp):
AAAATAAGAAGAGATAGAAGTGAAACTTAAAAAGACCATAAAACCAACATCTTCCTCAAACACAA
ACATGTAATCAG
Found at i:65388865 original size:14 final size:14
Alignment explanation
Indices: 65388846--65388872 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
65388836 TAGCCAATTC
65388846 AATTAATTTTTTTA
1 AATTAATTTTTTTA
65388860 AATTAATTTTTTT
1 AATTAATTTTTTT
65388873 TAGCGATTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
AATTAATTTTTTTA
Found at i:65396032 original size:84 final size:85
Alignment explanation
Indices: 65395875--65396044 Score: 227
Period size: 84 Copynumber: 2.0 Consensus size: 85
65395865 AATGCTTCAC
* * *
65395875 ATACTTGTGTTGTTACAGGTATGTCACAGGATCATCCGAAATTGGATTCTAACCTGATTGCTGAC
1 ATACTTGTGTTGTTACAAGTATGTCACAGGATCATCCGAAACTAGATTCTAACCTGATTGCTGAC
* * *
65395940 GTTGTCTTACGTATGGTGAA
66 ATTATCTTACCTATGGTGAA
* * * *
65395960 ATACTTGTGTTGTTGCAAGTATGTTAC-GGATCATCTGAAACTAGATTCTAACCTGATCT-TTGA
1 ATACTTGTGTTGTTACAAGTATGTCACAGGATCATCCGAAACTAGATTCTAACCTGAT-TGCTGA
65396023 CATTATCTTACCTATGGTGAA
65 CATTATCTTACCTATGGTGAA
65396044 A
1 A
65396045 ACAAGTCCTA
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
84 49 0.66
85 25 0.34
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.36
Consensus pattern (85 bp):
ATACTTGTGTTGTTACAAGTATGTCACAGGATCATCCGAAACTAGATTCTAACCTGATTGCTGAC
ATTATCTTACCTATGGTGAA
Found at i:65399085 original size:40 final size:40
Alignment explanation
Indices: 65399030--65399110 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
65399020 ATGGAACTCT
65399030 ATCTAAATTGGCAAAATAACTTATTTGCTTGAGTATCTGC
1 ATCTAAATTGGCAAAATAACTTATTTGCTTGAGTATCTGC
65399070 ATCTAAATTGGCAAAATAACTTATTTGCTTGAGTATCTGC
1 ATCTAAATTGGCAAAATAACTTATTTGCTTGAGTATCTGC
65399110 A
1 A
65399111 GTATAACTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (40 bp):
ATCTAAATTGGCAAAATAACTTATTTGCTTGAGTATCTGC
Found at i:65401581 original size:24 final size:24
Alignment explanation
Indices: 65401551--65401636 Score: 69
Period size: 24 Copynumber: 3.8 Consensus size: 24
65401541 AATAATAATT
65401551 TTATATTAA-AATTATTATTAAAAA
1 TTATATTAATAA-TATTATTAAAAA
*
65401575 TTATATTAATAATGTTATT--AAA
1 TTATATTAATAATATTATTAAAAA
* *
65401597 TTATA-T-ATTATTTTATT--AAA
1 TTATATTAATAATATTATTAAAAA
65401617 TTATATTTAATAATAATTAT
1 TTATA-TTAATAAT-ATTAT
65401637 GTTAAAATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
20 17 0.33
21 1 0.02
22 9 0.17
23 4 0.08
24 19 0.37
25 2 0.04
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (24 bp):
TTATATTAATAATATTATTAAAAA
Found at i:65401861 original size:44 final size:46
Alignment explanation
Indices: 65401791--65401884 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
65401781 ATTACAACAT
65401791 CATTCCATTCAACCAAACACAAGAATT-CT-ATTACAGCTCTACTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTACTC
*** *
65401835 CATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTACTC
65401881 CATT
1 CATT
65401885 ACAGCTCTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 24 0.55
45 2 0.05
46 18 0.41
ACGTcount: A:0.34, C:0.29, G:0.06, T:0.31
Consensus pattern (46 bp):
CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTACTC
Found at i:65401887 original size:16 final size:16
Alignment explanation
Indices: 65401866--65401919 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
65401856 TGAATTACTG
65401866 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
65401882 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
* *
65401898 ATTACAACCCTATTCC
1 ATTACAGCTCTATTCC
65401914 ATTACA
1 ATTACA
65401920 ATGAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.31, C:0.30, G:0.04, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:65407465 original size:19 final size:18
Alignment explanation
Indices: 65407437--65407476 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
65407427 CACCATTTTG
65407437 TTTGCTAATCCATTTCCC
1 TTTGCTAATCCATTTCCC
*
65407455 TTTGTCTAATCCATTTTCC
1 TTTG-CTAATCCATTTCCC
65407474 TTT
1 TTT
65407477 TACGGGGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.15, C:0.28, G:0.05, T:0.53
Consensus pattern (18 bp):
TTTGCTAATCCATTTCCC
Found at i:65411304 original size:31 final size:31
Alignment explanation
Indices: 65411260--65411330 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
65411250 ATAGTCCCTA
** * *
65411260 AACTATTCGAAAGTT-TTCATTTAAGTTATTG
1 AACTATTAAAAAGTTGTT-ATTTAAATCATTG
65411291 AACTATTAAAAAGTTGTTATTTAAATCATTG
1 AACTATTAAAAAGTTGTTATTTAAATCATTG
*
65411322 AGCTATTAA
1 AACTATTAA
65411331 GTTTTTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 32 0.94
32 2 0.06
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.42
Consensus pattern (31 bp):
AACTATTAAAAAGTTGTTATTTAAATCATTG
Found at i:65412503 original size:42 final size:42
Alignment explanation
Indices: 65412442--65412527 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 42
65412432 GCTAATCTTG
* *
65412442 CAACAAATTCTGGTGTTAGATTGTATCAA-CAGTCTTATTTGA
1 CAACAAATTCTGGTATTAGATTGTAT-AAGCAGTCTTATTCGA
* *
65412484 CAACAGATTCTGGTATTAGATTGTATAAGTAGTCTTATTCGA
1 CAACAAATTCTGGTATTAGATTGTATAAGCAGTCTTATTCGA
65412526 CA
1 CA
65412528 GTCGATTTAG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 2 0.05
42 37 0.95
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (42 bp):
CAACAAATTCTGGTATTAGATTGTATAAGCAGTCTTATTCGA
Found at i:65421884 original size:20 final size:20
Alignment explanation
Indices: 65421859--65421903 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
65421849 ACAAATTTCC
65421859 TTAAAAAAGTCAAACATTAA
1 TTAAAAAAGTCAAACATTAA
65421879 TTAAAAAAGTCAAACATTAA
1 TTAAAAAAGTCAAACATTAA
65421899 -TAAAA
1 TTAAAA
65421904 CTTCAAGTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.62, C:0.09, G:0.04, T:0.24
Consensus pattern (20 bp):
TTAAAAAAGTCAAACATTAA
Found at i:65421985 original size:31 final size:31
Alignment explanation
Indices: 65421947--65422011 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
65421937 TTTAAAAAAT
65421947 ACATTGATAACACAATATTCAATCAAACAAC
1 ACATTGATAACACAATATTCAATCAAACAAC
65421978 ACATTGATAACACAATATTCAATCAAACAAC
1 ACATTGATAACACAATATTCAATCAAACAAC
65422009 ACA
1 ACA
65422012 AAGTGCATGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.52, C:0.23, G:0.03, T:0.22
Consensus pattern (31 bp):
ACATTGATAACACAATATTCAATCAAACAAC
Found at i:65423932 original size:20 final size:21
Alignment explanation
Indices: 65423896--65423936 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
65423886 AATTACAAAT
65423896 AATTTAATAAATAAAAATAAA
1 AATTTAATAAATAAAAATAAA
*
65423917 AATTTAA-AACTAAAAATAAA
1 AATTTAATAAATAAAAATAAA
65423937 TAAAAAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
AATTTAATAAATAAAAATAAA
Found at i:65423937 original size:18 final size:19
Alignment explanation
Indices: 65423892--65423937 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
65423882 TAAAAATTAC
65423892 AAAT-AATTTAATAAATAA
1 AAATAAATTTAATAAATAA
*
65423910 AAATAAAAATTTAA-AACTAA
1 AAAT--AAATTTAATAAATAA
65423930 AAATAAAT
1 AAATAAAT
65423938 AAAAAAACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 8 0.33
20 9 0.38
21 7 0.29
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (19 bp):
AAATAAATTTAATAAATAA
Found at i:65424004 original size:9 final size:9
Alignment explanation
Indices: 65423963--65424003 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
65423953 TTTATACAAA
65423963 TAATTCGGT
1 TAATTCGGT
*
65423972 TAATTCGGG
1 TAATTCGGT
65423981 TAATTCGGT
1 TAATTCGGT
*
65423990 TAATTTGGT
1 TAATTCGGT
65423999 TAATT
1 TAATT
65424004 TTATACTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.24, C:0.07, G:0.22, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:65429155 original size:3 final size:3
Alignment explanation
Indices: 65429147--65429187 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
65429137 AAATATTTAC
65429147 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
65429188 TATCATCAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:65432272 original size:17 final size:20
Alignment explanation
Indices: 65432250--65432291 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
65432240 AAACCCTAAT
65432250 TTTCCC-TTTT-CTT-TTTC
1 TTTCCCTTTTTCCTTATTTC
65432267 TTTCCCTTTTTCCTTATTTC
1 TTTCCCTTTTTCCTTATTTC
65432287 TTTCC
1 TTTCC
65432292 TTGCTCATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.27
18 4 0.18
19 3 0.14
20 9 0.41
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTCCCTTTTTCCTTATTTC
Found at i:65432328 original size:16 final size:17
Alignment explanation
Indices: 65432307--65432341 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
65432297 CATTCGTGCC
65432307 TTTCTTT-TTTTTTCTT
1 TTTCTTTGTTTTTTCTT
65432323 TTTCTTTGTTTTTTCTT
1 TTTCTTTGTTTTTTCTT
65432340 TT
1 TT
65432342 ATTCATTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.86
Consensus pattern (17 bp):
TTTCTTTGTTTTTTCTT
Found at i:65442122 original size:5 final size:5
Alignment explanation
Indices: 65442112--65442138 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
65442102 CCACAATCCG
65442112 ACATC ACATC ACATC ACATC ACATC AC
1 ACATC ACATC ACATC ACATC ACATC AC
65442139 TACCCCTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.19
Consensus pattern (5 bp):
ACATC
Found at i:65445144 original size:31 final size:31
Alignment explanation
Indices: 65445117--65445209 Score: 168
Period size: 31 Copynumber: 3.0 Consensus size: 31
65445107 TCAGTCATGA
*
65445117 AATTAGTAATAATTTTATAATTTAGTCACTC
1 AATTATTAATAATTTTATAATTTAGTCACTC
65445148 AATTATTAATAATTTTATAATTTAGTCACTC
1 AATTATTAATAATTTTATAATTTAGTCACTC
*
65445179 AATTATTAATAAATTTATAATTTAGTCACTC
1 AATTATTAATAATTTTATAATTTAGTCACTC
65445210 TCAACATAAT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.40, C:0.10, G:0.04, T:0.46
Consensus pattern (31 bp):
AATTATTAATAATTTTATAATTTAGTCACTC
Found at i:65450245 original size:12 final size:10
Alignment explanation
Indices: 65450212--65450263 Score: 61
Period size: 10 Copynumber: 5.3 Consensus size: 10
65450202 ATCTTAATTC
65450212 TAAAAAAAT-
1 TAAAAAAATA
65450221 TAAAAAAATA
1 TAAAAAAATA
65450231 TAAAAAAATA
1 TAAAAAAATA
* * * *
65450241 CATAAATATT
1 TAAAAAAATA
65450251 TAAAAAAATA
1 TAAAAAAATA
65450261 TAA
1 TAA
65450264 TAAATTTTTA
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
9 9 0.26
10 25 0.74
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (10 bp):
TAAAAAAATA
Found at i:65450256 original size:21 final size:21
Alignment explanation
Indices: 65450212--65450278 Score: 77
Period size: 20 Copynumber: 3.3 Consensus size: 21
65450202 ATCTTAATTC
* *
65450212 TAAAAAAAT-TAA-AAAAATA
1 TAAAAAAATATAATAAATATT
*
65450231 TAAAAAAATA-CATAAATATT
1 TAAAAAAATATAATAAATATT
*
65450251 TAAAAAAATATAATAAATTTT
1 TAAAAAAATATAATAAATATT
65450272 TAAAAAA
1 TAAAAAA
65450279 TGTAAAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 10 0.25
20 15 0.38
21 15 0.38
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.28
Consensus pattern (21 bp):
TAAAAAAATATAATAAATATT
Found at i:65450287 original size:22 final size:21
Alignment explanation
Indices: 65450212--65450289 Score: 74
Period size: 21 Copynumber: 3.8 Consensus size: 21
65450202 ATCTTAATTC
65450212 TAAAAAAATTAAAA-AAATA--
1 TAAAAAAA-TAAAATAAATATT
*
65450231 TAAAAAAAT-ACATAAATATT
1 TAAAAAAATAAAATAAATATT
* *
65450251 TAAAAAAATATAATAAATTTT
1 TAAAAAAATAAAATAAATATT
*
65450272 TAAAAAATGTAAAATAAA
1 TAAAAAA-ATAAAATAAA
65450290 AATGATTTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
17 2 0.04
18 6 0.12
19 8 0.17
20 9 0.19
21 15 0.31
22 8 0.17
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (21 bp):
TAAAAAAATAAAATAAATATT
Found at i:65450329 original size:25 final size:24
Alignment explanation
Indices: 65450296--65450344 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
65450286 TAAAAATGAT
*
65450296 TTATATTAATATTAAATATAAATAA
1 TTATATTAATATCAAATA-AAATAA
65450321 TTATATTAATATCAAATAAAATAA
1 TTATATTAATATCAAATAAAATAA
65450345 AAATACCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
TTATATTAATATCAAATAAAATAA
Found at i:65455108 original size:18 final size:18
Alignment explanation
Indices: 65455085--65455121 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
65455075 TAATTCTTCT
*
65455085 AATGAATTAGAAACTTAA
1 AATGAATTAAAAACTTAA
65455103 AATGAATTAAAAACTTAA
1 AATGAATTAAAAACTTAA
65455121 A
1 A
65455122 CTACCCCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.27
Consensus pattern (18 bp):
AATGAATTAAAAACTTAA
Found at i:65458213 original size:20 final size:20
Alignment explanation
Indices: 65458185--65458222 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
65458175 TTCCGTTTAG
65458185 CTCACATGAGCTTCAGTTAA
1 CTCACATGAGCTTCAGTTAA
* *
65458205 CTCATATGAGTTTCAGTT
1 CTCACATGAGCTTCAGTT
65458223 TAACGCTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (20 bp):
CTCACATGAGCTTCAGTTAA
Found at i:65458889 original size:21 final size:20
Alignment explanation
Indices: 65458865--65458904 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
65458855 TATGAGCTTT
*
65458865 AATGATTGATGGTAGATTATG
1 AATGATTGATGATAG-TTATG
*
65458886 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
65458905 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:65464248 original size:26 final size:26
Alignment explanation
Indices: 65464210--65464267 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
65464200 CATGAAATTC
65464210 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
65464236 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
65464262 TTATCA
1 TTATCA
65464268 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:65471135 original size:26 final size:26
Alignment explanation
Indices: 65471100--65471261 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
65471090 TGATACAAAT
* *
65471100 TGATAATAGGTTAGGTAAATGTTCCT
1 TGATAATAGGTTAGGTAAATGTTTCA
65471126 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
65471152 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
65471178 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
65471204 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* *
65471230 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
65471256 TGATAA
1 TGATAA
65471262 GAATTCATGT
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 130 1.00
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:65473272 original size:135 final size:136
Alignment explanation
Indices: 65473030--65473313 Score: 509
Period size: 135 Copynumber: 2.1 Consensus size: 136
65473020 TTGAGGTCTC
65473030 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
65473095 TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAA-GGCTCTGGCCCAGTACCA
66 TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
*
65473159 CTGTTA
131 CTATTA
65473165 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTAT-GGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
65473229 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGTTCTGGCCCAGTACC
66 TGTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65473294 ACTATTA
130 ACTATTA
**
65473301 CCTGAATGGGCTT
1 CCCAAATGGGCTT
65473314 AGGCCCAATA
Statistics
Matches: 143, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
134 22 0.15
135 88 0.62
136 33 0.23
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTATTA
Found at i:65483570 original size:44 final size:44
Alignment explanation
Indices: 65483506--65483938 Score: 582
Period size: 44 Copynumber: 10.1 Consensus size: 44
65483496 GATCGAATAT
*
65483506 GATTTGGCATCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
65483550 TATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
65483594 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
65483638 -ATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCAAAGAT----
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
65483677 GATTTGGCATCTCTGTAGCGG-GGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
65483720 GATTTGGCGTCTTTGTAGCGGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
65483760 GATTTGGCATCTCTGTAGCGGCAGAGAACAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
65483804 GATTTGGCGTCTCTGTAGCAGTGGAGAGCAGATCAAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
65483848 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATC-ATAGGTAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA-AGATAACA
* * * * *
65483892 GATTTGGTATCTCTATAGCGGCAGAGAGCTGATCGAAAATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
65483936 GAT
1 GAT
65483939 CGGTGTTCCT
Statistics
Matches: 344, Mismatches: 33, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
39 17 0.05
40 54 0.16
43 56 0.16
44 216 0.63
45 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.31, T:0.22
Consensus pattern (44 bp):
GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:65484750 original size:13 final size:13
Alignment explanation
Indices: 65484732--65484756 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65484722 CCACAGTGCG
65484732 CGGTGGCCGGCGA
1 CGGTGGCCGGCGA
65484745 CGGTGGCCGGCG
1 CGGTGGCCGGCG
65484757 GCGGCGGATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.32, G:0.56, T:0.08
Consensus pattern (13 bp):
CGGTGGCCGGCGA
Found at i:65485499 original size:24 final size:24
Alignment explanation
Indices: 65485462--65485524 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
65485452 TCATGTACAC
*
65485462 ATTATT-TATATTATTTTCA-TGATT
1 ATTATTGTAT-TTATTTTCACT-ACT
* *
65485486 ATTATTGTGTTTATTTTTACTACT
1 ATTATTGTATTTATTTTCACTACT
65485510 ATTATTGTATTTATT
1 ATTATTGTATTTATT
65485525 ATTAGTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 30 0.91
25 3 0.09
ACGTcount: A:0.25, C:0.05, G:0.06, T:0.63
Consensus pattern (24 bp):
ATTATTGTATTTATTTTCACTACT
Found at i:65485539 original size:24 final size:24
Alignment explanation
Indices: 65485483--65485539 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
65485473 TATTTTCATG
* *
65485483 ATTATTATTGTGTTTATTTTTACT
1 ATTATTATTGTATTTATTATTACT
* *
65485507 ACTATTATTGTATTTATTATTAGT
1 ATTATTATTGTATTTATTATTACT
*
65485531 ATTAGTATT
1 ATTATTATT
65485540 ATAATTACTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.61
Consensus pattern (24 bp):
ATTATTATTGTATTTATTATTACT
Found at i:65485755 original size:23 final size:22
Alignment explanation
Indices: 65485729--65485849 Score: 70
Period size: 23 Copynumber: 5.3 Consensus size: 22
65485719 AATGTGTATG
65485729 TATTATATATATTTTTAATACTA
1 TATTATATATATTTTTAATA-TA
* *
65485752 TATTATGTATA-TATT-ATATA
1 TATTATATATATTTTTAATATA
*
65485772 TA-TATATATATGTATTTATTATA
1 TATTATATATAT-T-TTTAATATA
*
65485795 TTTTTATGTATATATTTTTAATATCA
1 -TATTA--TATATATTTTTAATAT-A
* **
65485821 CATTAT-TCATATGTTTTTTTATA
1 TATTATAT-ATAT-TTTTAATATA
65485844 TATTAT
1 TATTAT
65485850 CCCATGTAAA
Statistics
Matches: 75, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
19 7 0.09
20 4 0.05
21 4 0.05
22 6 0.08
23 25 0.33
24 8 0.11
25 12 0.16
26 2 0.03
27 7 0.09
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (22 bp):
TATTATATATATTTTTAATATA
Found at i:65485999 original size:3 final size:3
Alignment explanation
Indices: 65485991--65486061 Score: 83
Period size: 3 Copynumber: 24.0 Consensus size: 3
65485981 TTTATTCATA
* * *
65485991 TAT TAT TAT CAT TAT T-T TCT ATGT TA- TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
*
65486035 TAT TAT TAT CAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
65486062 CATCATTATC
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
2 4 0.07
3 53 0.90
4 2 0.03
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:65486006 original size:9 final size:9
Alignment explanation
Indices: 65485992--65486071 Score: 83
Period size: 9 Copynumber: 9.0 Consensus size: 9
65485982 TTATTCATAT
65485992 ATTATTATC
1 ATTATTATC
*
65486001 ATTATTTTC
1 ATTATTATC
*
65486010 -TATGTTAT-
1 AT-TATTATC
*
65486018 ATTATTATT
1 ATTATTATC
*
65486027 ATTATTATT
1 ATTATTATC
65486036 ATTATTATC
1 ATTATTATC
*
65486045 ATTATTATT
1 ATTATTATC
65486054 ATTATTATC
1 ATTATTATC
*
65486063 ATCATTATC
1 ATTATTATC
65486072 GTTTTCATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
8 6 0.10
9 54 0.90
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.60
Consensus pattern (9 bp):
ATTATTATC
Found at i:65488980 original size:3 final size:3
Alignment explanation
Indices: 65488974--65489071 Score: 74
Period size: 3 Copynumber: 32.7 Consensus size: 3
65488964 CTTATATCTT
* * *
65488974 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAC TTA TAA TATT TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
* * * * * *
65489020 TCA T-A CAA TAA TAA TAC TTA TAA TATT TAA TAA TAA T-A CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
*
65489064 TAA AAA TA
1 TAA TAA TA
65489072 TGTTTAACAA
Statistics
Matches: 72, Mismatches: 19, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
2 2 0.03
3 66 0.92
4 4 0.06
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:65488993 original size:33 final size:33
Alignment explanation
Indices: 65488980--65489066 Score: 106
Period size: 33 Copynumber: 2.6 Consensus size: 33
65488970 TCTTTAATAA
* *
65488980 TAATAATAATAATAATAATAATACTTATAATATT
1 TAATAATAATAACAATAATAATACTTAT-ATCTT
* *
65489014 TAATAATCAT-ACAATAATAATACTTATAATATT
1 TAATAATAATAACAATAATAATACTTAT-ATCTT
65489047 TAATAATAAT-ACAATAATAA
1 TAATAATAATAACAATAATAA
65489067 AAATATGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
33 41 0.82
34 9 0.18
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (33 bp):
TAATAATAATAACAATAATAATACTTATATCTT
Found at i:65489002 original size:39 final size:39
Alignment explanation
Indices: 65488951--65489071 Score: 148
Period size: 39 Copynumber: 3.3 Consensus size: 39
65488941 AAATATGTTG
* *
65488951 AATAATAATAATACTTAT-ATCTTTAATAATAATAATAAT
1 AATAATAATAATACTTATAATATTTAATAATAAT-ACAAT
65488990 AATAATAATAATACTTATAATA-TT--TAATAAT-C-AT
1 AATAATAATAATACTTATAATATTTAATAATAATACAAT
*
65489024 -ACAATAATAATACTTATAATATTTAATAATAATACAAT
1 AATAATAATAATACTTATAATATTTAATAATAATACAAT
*
65489062 AATAAAAATA
1 AATAATAATA
65489072 TGTTTAACAA
Statistics
Matches: 70, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
33 20 0.29
34 4 0.06
36 7 0.10
37 8 0.11
38 2 0.03
39 27 0.39
40 2 0.03
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (39 bp):
AATAATAATAATACTTATAATATTTAATAATAATACAAT
Found at i:65489031 original size:11 final size:11
Alignment explanation
Indices: 65488975--65489066 Score: 61
Period size: 11 Copynumber: 8.7 Consensus size: 11
65488965 TTATATCTTT
65488975 AATAATAAT--
1 AATAATAATAC
65488984 AATAATAAT--
1 AATAATAATAC
65488993 AATAATAATAC
1 AATAATAATAC
* **
65489004 TTATAAT-ATTT
1 -AATAATAATAC
*
65489015 AATAATCATAC
1 AATAATAATAC
65489026 AATAATAATAC
1 AATAATAATAC
* **
65489037 TTATAAT-ATTT
1 -AATAATAATAC
65489048 AATAATAATAC
1 AATAATAATAC
65489059 AATAATAA
1 AATAATAA
65489067 AAATATGTTT
Statistics
Matches: 64, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
9 18 0.28
10 10 0.16
11 26 0.41
12 10 0.16
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (11 bp):
AATAATAATAC
Found at i:65491130 original size:48 final size:47
Alignment explanation
Indices: 65490986--65491146 Score: 164
Period size: 48 Copynumber: 3.4 Consensus size: 47
65490976 AAACCGTCAC
*
65490986 TCAGTAAAATTCAAAATCAGAGCCACGCGTCACGTATAAAATCGTGAT
1 TCAGTAAAA-TCAAAATCAGAGCCACGCGTCACTTATAAAATCGTGAT
* * ** * * * *
65491034 TCAGTGAGAATCAAAATCAAAGTTA--TGTCACTTATGAAACCGTTAT
1 TCAGT-AAAATCAAAATCAGAGCCACGCGTCACTTATAAAATCGTGAT
* *
65491080 TCAGTAAAAGTCGAAATCAGAGCCACGCGTCACTTACAAAATCGTGAT
1 TCAGTAAAA-TCAAAATCAGAGCCACGCGTCACTTATAAAATCGTGAT
*
65491128 TCAGTGAGAATCAAAATCA
1 TCAGT-AAAATCAAAATCA
65491147 AAACGACTCG
Statistics
Matches: 87, Mismatches: 21, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
45 3 0.03
46 32 0.37
48 46 0.53
49 6 0.07
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (47 bp):
TCAGTAAAATCAAAATCAGAGCCACGCGTCACTTATAAAATCGTGAT
Found at i:65491133 original size:94 final size:94
Alignment explanation
Indices: 65490972--65491148 Score: 300
Period size: 94 Copynumber: 1.9 Consensus size: 94
65490962 ATACACCAAG
* *
65490972 TATGAAACCGTCACTCAGTAAAATTCAAAATCAGAGCCACGCGTCACGTATAAAATCGTGATTCA
1 TATGAAACCGTCACTCAGTAAAAGTCAAAATCAGAGCCACGCGTCACGTACAAAATCGTGATTCA
65491037 GTGAGAATCAAAATCAAAGTTATGTCACT
66 GTGAGAATCAAAATCAAAGTTATGTCACT
* * * *
65491066 TATGAAACCGTTATTCAGTAAAAGTCGAAATCAGAGCCACGCGTCACTTACAAAATCGTGATTCA
1 TATGAAACCGTCACTCAGTAAAAGTCAAAATCAGAGCCACGCGTCACGTACAAAATCGTGATTCA
65491131 GTGAGAATCAAAATCAAA
66 GTGAGAATCAAAATCAAA
65491149 ACGACTCGTT
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 77 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (94 bp):
TATGAAACCGTCACTCAGTAAAAGTCAAAATCAGAGCCACGCGTCACGTACAAAATCGTGATTCA
GTGAGAATCAAAATCAAAGTTATGTCACT
Found at i:65493315 original size:205 final size:203
Alignment explanation
Indices: 65492996--65493552 Score: 879
Period size: 202 Copynumber: 2.7 Consensus size: 203
65492986 AGCTGGAACT
* *
65492996 AAGTACATTGAAACTAGTCTCCTTTTTTCCTTCAATATTGAACAAAAAAATAATTCTGAAATTTG
1 AAGTACATTGAAACTAGTCTCC-TATTTCCTTCGATATTGAACAAAAAAATAATT-TGAAATTTG
*
65493061 AATTACAATATAATAATGCTTGGTGCAGTGTAATCAATGAATGGAGATTCCCAATGAAAATTTTG
64 AATTACAATATAATAATGCTTGGTGCAGTGTAATTAATGAATGGAGATTCCCAATGAAAATTTTG
* *
65493126 ATTACACGTTTCATTCACACACAAAT-AATACATTACTTCTGAAACTGTCACTCAGTGAGAGTCG
129 ATTACACGTTTCATTCACACACAAATGAA-ACATCACTTATGAAACTGTCACTCAGTGAGAGTCG
*
65493190 AAACCAAAGTC
193 AAACCAAAGCC
*
65493201 AAGTACATTGAAACTAATCTCCTATTTCACTTCGATATTGAACAAAAAAATAATTTGGAAATTTG
1 AAGTACATTGAAACTAGTCTCCTATTTC-CTTCGATATTGAACAAAAAAATAATTT-GAAATTTG
65493266 AATTACAATATAATAATGCTTGGTGCAGTGTAATTAATGAATGGAGATTCCCAATGAAAA-TTTG
64 AATTACAATATAATAATGCTTGGTGCAGTGTAATTAATGAATGGAGATTCCCAATGAAAATTTTG
65493330 ATT--ACGTTTCATTCACACACAAATGAAACATCACTTATGAAACTGTCACTCAGTGAGAGTCGA
129 ATTACACGTTTCATTCACACACAAATGAAACATCACTTATGAAACTGTCACTCAGTGAGAGTCGA
65493393 AACCAAAGCC
194 AACCAAAGCC
* * * * *
65493403 AGGTACATCGAAACTAGTCTCCTATTTCCATCTGATATTGAAAAAAAAAATAATTTTAAAATTTG
1 AAGTACATTGAAACTAGTCTCCTATTTCCTTC-GATATTGAACAAAAAAATAA-TTTGAAATTTG
** * *
65493468 AATTACAATATAATAATGCTTGGTGTGGTGTAATTAATGAATAGAGATTCTCAATGAAAATTTTG
64 AATTACAATATAATAATGCTTGGTGCAGTGTAATTAATGAATGGAGATTCCCAATGAAAATTTTG
65493533 ATTACACGTTTCATTCACAC
129 ATTACACGTTTCATTCACAC
65493553 TATTACTCAG
Statistics
Matches: 327, Mismatches: 17, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
201 3 0.01
202 171 0.52
203 12 0.04
204 13 0.04
205 128 0.39
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (203 bp):
AAGTACATTGAAACTAGTCTCCTATTTCCTTCGATATTGAACAAAAAAATAATTTGAAATTTGAA
TTACAATATAATAATGCTTGGTGCAGTGTAATTAATGAATGGAGATTCCCAATGAAAATTTTGAT
TACACGTTTCATTCACACACAAATGAAACATCACTTATGAAACTGTCACTCAGTGAGAGTCGAAA
CCAAAGCC
Found at i:65498319 original size:10 final size:10
Alignment explanation
Indices: 65498291--65498325 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
65498281 TAATACAAGT
65498291 GTAAAATGCA
1 GTAAAATGCA
65498301 GTAATAATGCA
1 GTAA-AATGCA
65498312 GTAAAATGCA
1 GTAAAATGCA
65498322 GTAA
1 GTAA
65498326 GTTTGTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.49, C:0.09, G:0.20, T:0.23
Consensus pattern (10 bp):
GTAAAATGCA
Found at i:65514253 original size:15 final size:15
Alignment explanation
Indices: 65514228--65514260 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
65514218 ATTTGGTTAT
65514228 TAATATAATTAAATAA
1 TAATATAATTAAA-AA
65514244 TAAT-TAATTAAAAA
1 TAATATAATTAAAAA
65514258 TAA
1 TAA
65514261 ATACTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 8 0.47
16 4 0.24
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
TAATATAATTAAAAA
Found at i:65518195 original size:24 final size:26
Alignment explanation
Indices: 65518153--65518204 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
65518143 CTAATAACAA
* *
65518153 ATTTTGACTTTATAAATAT-TATCTT
1 ATTTTGACTTTACAAATATATATATT
*
65518178 ATTTT-ACTTTACATATATATATATT
1 ATTTTGACTTTACAAATATATATATT
65518203 AT
1 AT
65518205 ATCATATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.56
Consensus pattern (26 bp):
ATTTTGACTTTACAAATATATATATT
Found at i:65534591 original size:15 final size:15
Alignment explanation
Indices: 65534573--65534614 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
65534563 TAACATTATT
65534573 TATTATTA-TATTTAC
1 TATTATTATTA-TTAC
*
65534588 TATTCTTATTATTAC
1 TATTATTATTATTAC
*
65534603 TATTACTATTAT
1 TATTATTATTAT
65534615 ATTTAGTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 21 0.91
16 2 0.09
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTATTATTATTAC
Found at i:65534598 original size:21 final size:21
Alignment explanation
Indices: 65534572--65534612 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
65534562 ATAACATTAT
65534572 TTATTATTA-TATTTACTATTC
1 TTATTATTACTA-TTACTATTC
65534593 TTATTATTACTATTACTATT
1 TTATTATTACTATTACTATT
65534613 ATATTTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (21 bp):
TTATTATTACTATTACTATTC
Done.