Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 226 of 292
Found at i:65938104 original size:54 final size:54
Alignment explanation
Indices: 65938037--65938419 Score: 624
Period size: 54 Copynumber: 7.1 Consensus size: 54
65938027 ATGTAACCCG
* * *
65938037 AGGCTCAACTCACCTCTCGCAATATGGGTTGAATTTTGAAAAACAGAAGTTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
*
65938091 AGGCTCAATTCACCTCTCGCAATATGAGTTGATCTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTGAAAAACAGAAATTAAA
*
65938146 AGGCTTAACTCACCTCTCGCAATATGAGTCT-ATTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGT-TGATTTTTGAAAAACAGAAATTAAA
*
65938200 AGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
* * * *
65938254 AGGCTTAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACATAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
*
65938308 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
* *
65938362 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAGAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
65938416 AGGC
1 AGGC
65938420 GGAATTTGAA
Statistics
Matches: 307, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
53 1 0.00
54 256 0.83
55 49 0.16
56 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (54 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
Found at i:65938506 original size:14 final size:14
Alignment explanation
Indices: 65938487--65938520 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
65938477 TTGATTTTCC
65938487 TGAAAAGCA-AAATT
1 TGAAAAGCAGAAA-T
65938501 TGAAAAGCAGAAAT
1 TGAAAAGCAGAAAT
65938515 TGAAAA
1 TGAAAA
65938521 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.84
15 3 0.16
ACGTcount: A:0.59, C:0.06, G:0.18, T:0.18
Consensus pattern (14 bp):
TGAAAAGCAGAAAT
Found at i:65938554 original size:91 final size:87
Alignment explanation
Indices: 65938362--65938594 Score: 319
Period size: 91 Copynumber: 2.6 Consensus size: 87
65938352 AGAAATTAAA
* * *
65938362 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAGAAACAGAAATTAAAAGGCGGAATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAGAAACAGAAATTAAAAGGCAGAAATT
*
65938427 GAAAATACCTCAGCGTGTCCTG
66 GAAAATACCTCAGCGTGACCTG
* *
65938449 AGGCTCAACTCACCTCTCGTAATATAAGTTGATTTTCCTGA-AAAGCA-AAATTTGAAAA-GCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT--TGAGAAA-CAGAAA-TT-AAAAGGCAG
65938511 AAATTGAAAATACCTCAGCGTGCGACCTG
61 AAATTGAAAATACCTCAGCGT--GACCTG
*
65938540 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAGAAACAGAAATTAAAA
65938595 ATACCTTAGC
Statistics
Matches: 129, Mismatches: 8, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
87 33 0.26
88 10 0.08
89 37 0.29
90 10 0.08
91 39 0.30
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAGAAACAGAAATTAAAAGGCAGAAATT
GAAAATACCTCAGCGTGACCTG
Found at i:65938630 original size:164 final size:161
Alignment explanation
Indices: 65938428--65938921 Score: 506
Period size: 170 Copynumber: 3.0 Consensus size: 161
65938418 GCGGAATTTG
* * * * *
65938428 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATAAGTTGATTTTCCTGAAA-
1 AAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAACATAAGTTGATTTT--TGAAAC
* * * **
65938492 AGCAAAATTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCGACCTGAGGCTCAACTCACCTCT
64 AACAAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGC--CCCAAGGCTCAACTCACCTCT
*
65938557 CGCAATATGAGTTGATTTTTGAAAAACAGAAATTA
127 CGCAATATGAGTTGACTTTTGAAAAACAGAAATTA
* *
65938592 AAAATACCTTAGCATGCCCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAA
1 AAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAACATAAGTTGATTTTTGAAACAA
*
65938657 CAAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCAAGGCTCTACTCACCTCTCGCA
66 CAAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCA
*
65938722 ATATGAGTTGACTTTTGAAAAGTATAAATTAAACAGGAATTA
131 ATATGAGTTGACTTTT-----G----AA--AAACAGAAATTA
* * ** * * *
65938764 AAAATTCCTCAGCGTGTGAGCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTT-AAA-
1 AAAATACCTCAGC--ATGCCCCGAGGCTCAACTCACCTCTCGCAACATAAGTTGATTTTTGAAAC
* * * *
65938827 AA-AATAAATT---AAACAGGAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCT
64 AACAA-AAATTGAAAAACA-GAAATTGAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCT
65938888 CGCAATATGAGTTGA--TTT-AAAAACAGAAA-TA
127 CGCAATATGAGTTGACTTTTGAAAAACAGAAATTA
65938919 AAA
1 AAA
65938922 CATCAAAATA
Statistics
Matches: 286, Mismatches: 28, Indels: 41
0.81 0.08 0.12
Matches are distributed among these distances:
155 5 0.02
156 8 0.03
158 2 0.01
161 37 0.13
162 5 0.02
163 39 0.14
164 50 0.17
166 1 0.00
168 3 0.01
169 5 0.02
170 57 0.20
171 2 0.01
172 29 0.10
173 3 0.01
174 40 0.14
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (161 bp):
AAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAACATAAGTTGATTTTTGAAACAA
CAAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCA
ATATGAGTTGACTTTTGAAAAACAGAAATTA
Found at i:65938640 original size:73 final size:74
Alignment explanation
Indices: 65938499--65938670 Score: 247
Period size: 73 Copynumber: 2.3 Consensus size: 74
65938489 AAAAGCAAAA
* * * * *
65938499 TTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCGACCTGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTAAAAATACCTCAGCATGC-ACCCGAGGCTCAACTCACCTCTCGCAACA
65938564 TGAGTTGATT
65 TGAGTTGATT
*
65938574 TTTGAAAAACAGAAATTAAAAATACCTTAGCATGC-CCCGAGGCTCAACTCACCTCTCGCAACAT
1 TTTGAAAAACAGAAATTAAAAATACCTCAGCATGCACCCGAGGCTCAACTCACCTCTCGCAACAT
65938638 GAGTTGATT
66 GAGTTGATT
*
65938647 TTTGAAACAACAAAAATTGAAAAA
1 TTTGAAA-AACAGAAATT-AAAAA
65938671 CAGAAATTGA
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
73 43 0.49
74 9 0.10
75 36 0.41
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (74 bp):
TTTGAAAAACAGAAATTAAAAATACCTCAGCATGCACCCGAGGCTCAACTCACCTCTCGCAACAT
GAGTTGATT
Found at i:65938677 original size:14 final size:14
Alignment explanation
Indices: 65938648--65938683 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
65938638 GAGTTGATTT
65938648 TTGAAACAACAAAAA
1 TTGAAA-AACAAAAA
*
65938663 TTGAAAAACAGAAA
1 TTGAAAAACAAAAA
65938677 TTGAAAA
1 TTGAAAA
65938684 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 14 0.70
15 6 0.30
ACGTcount: A:0.64, C:0.08, G:0.11, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Found at i:65938728 original size:88 final size:83
Alignment explanation
Indices: 65938580--65938905 Score: 411
Period size: 88 Copynumber: 3.8 Consensus size: 83
65938570 GATTTTTGAA
* * *
65938580 AAACAGAAATTAAAAATACCTTAGCATGCCCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGA
1 AAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
65938645 TTTTTGAAACAACAAAAATT
66 TTTTTGAAA-AA-AAAAATT
* * *
65938665 GAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCAAGGCTCTACTCACCTCTCGCAATATGAGT
1 ---AAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
65938730 TGACTTTTGAAAAGTATAAATT
63 TGATTTTTGAAAA-AAAAAATT
* * ** *
65938752 AAACAGGAATTAAAAATTCCTCAGCGTGTGAGCCGAGGCTCAACTCATCTCTCGCAATATGAGTT
1 AAACAGAAATTAAAAATACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
65938817 GATTTTT-AAAAAAATAAATT
64 GATTTTTGAAAAAAA-AAATT
* *
65938837 AAACAGGAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAACA-GAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
65938902 ATTT
65 ATTT
65938906 AAAAACAGAA
Statistics
Matches: 207, Mismatches: 26, Indels: 14
0.84 0.11 0.06
Matches are distributed among these distances:
84 63 0.30
85 14 0.07
86 56 0.27
87 7 0.03
88 67 0.32
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.26
Consensus pattern (83 bp):
AAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAAAAAAAATT
Found at i:65938809 original size:247 final size:253
Alignment explanation
Indices: 65938362--65938905 Score: 676
Period size: 252 Copynumber: 2.1 Consensus size: 253
65938352 AGAAATTAAA
* * * * * *
65938362 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAGAAACAGAAATTAAAAGGCGGAATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGACAGAAATT
* ** * *
65938427 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATAAGTTGATTTTCCTGAAA
66 GAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATAAGTTGACTTT-CTGAAA
*
65938492 AGCAAAATTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCGACCTGAGGCTCAACTCACCTCT
130 AGCAAAATTT-AAAAGCAGAAATTAAAAATACCTCAGCGTGCGACCTGAGGCTCAACTCACCTCT
* *
65938557 CGCAATATGAGTTGA-TTTT-TGAA-AAACA-GAAATTAAAAATACCTTAGCATGCCCCG
194 CGCAATATGAGTTGATTTTTATAAATAAACAGGAAATTAAAAATACCTCAGCATGCCCCG
*
65938613 AGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTGAAAA-ACAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-AACAAAAATT-AAAAGACAGAAA
* *
65938677 TTGAAAATACCTCAGCGTGCCCCAAGGCTCTACTCACCTCTCGCAATATGAGTTGACTTT-TGAA
64 TTGAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATAAGTTGACTTTCTGAA
* * * * *
65938741 AAGTATAAA-TT-AAA-CAGGAATTAAAAATTCCTCAGCGTGTGAGCC-GAGGCTCAACTCATCT
129 AAGCA-AAATTTAAAAGCAGAAATTAAAAATACCTCAGCGTGCGA-CCTGAGGCTCAACTCACCT
* * *
65938802 CTCGCAATATGAGTTGATTTTTAAAAAAATAAATTAAACAGGAATTTAAAAATACCTCAGCGTGT
192 CTCGCAATATGAGTTGATTTTT------ATAAA-TAAACAGGAAATTAAAAATACCTCAGCATGC
65938867 CCCG
250 CCCG
65938871 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
65938906 AAAAACAGAA
Statistics
Matches: 252, Mismatches: 26, Indels: 23
0.84 0.09 0.08
Matches are distributed among these distances:
247 56 0.22
248 9 0.04
250 10 0.04
251 41 0.16
252 66 0.26
253 4 0.02
255 3 0.01
257 5 0.02
258 58 0.23
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (253 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGACAGAAATT
GAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATAAGTTGACTTTCTGAAAA
GCAAAATTTAAAAGCAGAAATTAAAAATACCTCAGCGTGCGACCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTATAAATAAACAGGAAATTAAAAATACCTCAGCATGCCCCG
Found at i:65938904 original size:84 final size:83
Alignment explanation
Indices: 65938580--65938905 Score: 411
Period size: 84 Copynumber: 3.8 Consensus size: 83
65938570 GATTTTTGAA
* * *
65938580 AAACAGAAATTAAAAATACCTTAGCATGCCCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGA
1 AAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
65938645 TTTTTGAAACAACAA-AAATT
66 TTTTT-AAA-AA-AATAAATT
* * *
65938665 GAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCAAGGCTCTACTCACCTCTCGCAATATGAGT
1 ---AAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* **
65938730 TGACTTTTGAAAAGTATAAATT
63 TGA-TTTTTAAAAAAATAAATT
* * ** *
65938752 AAACAGGAATTAAAAATTCCTCAGCGTGTGAGCCGAGGCTCAACTCATCTCTCGCAATATGAGTT
1 AAACAGAAATTAAAAATACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
65938817 GATTTTTAAAAAAATAAATT
64 GATTTTTAAAAAAATAAATT
* *
65938837 AAACAGGAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAACA-GAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
65938902 ATTT
65 ATTT
65938906 AAAAACAGAA
Statistics
Matches: 207, Mismatches: 26, Indels: 14
0.84 0.11 0.06
Matches are distributed among these distances:
84 62 0.30
85 20 0.10
86 53 0.26
87 6 0.03
88 62 0.30
89 4 0.02
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.26
Consensus pattern (83 bp):
AAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTAAAAAAATAAATT
Found at i:65951168 original size:27 final size:29
Alignment explanation
Indices: 65951111--65951173 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 29
65951101 ACTAAAAGGG
*
65951111 TATACATATATGTATAATGATATTAGAAA
1 TATACATATATATATAATGATATTAGAAA
65951140 TATACTATATATATATAAT-AT-TT-GAAA
1 TATAC-ATATATATATAATGATATTAGAAA
65951167 TATACAT
1 TATACAT
65951174 GAAGTGATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
26 2 0.06
27 9 0.28
28 2 0.06
29 7 0.22
30 12 0.38
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.41
Consensus pattern (29 bp):
TATACATATATATATAATGATATTAGAAA
Found at i:65951574 original size:11 final size:10
Alignment explanation
Indices: 65951558--65951684 Score: 51
Period size: 9 Copynumber: 13.3 Consensus size: 10
65951548 ATACAATATT
65951558 TAACATATACA
1 TAACATATA-A
65951569 TAACATATAA
1 TAACATATAA
*
65951579 TAA-AAATAA
1 TAACATATAA
65951588 T-A-ATATAA
1 TAACATATAA
* *
65951596 TATATATACAA
1 TA-ACATATAA
65951607 T-ACATAT-A
1 TAACATATAA
*
65951615 TAACA-AAACA
1 TAACATATA-A
65951625 TATAC-TATAA
1 TA-ACATATAA
*
65951635 TAATA-ATAA
1 TAACATATAA
*
65951644 TAATA-ATAA
1 TAACATATAA
*
65951653 TAATATAATAA
1 TAACAT-ATAA
*
65951664 TAATA-ATAA
1 TAACATATAA
*
65951673 TAATA-ATAA
1 TAACATATAA
65951682 TAA
1 TAA
65951685 TAATAAGGAT
Statistics
Matches: 97, Mismatches: 8, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
8 10 0.10
9 48 0.49
10 11 0.11
11 28 0.29
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (10 bp):
TAACATATAA
Found at i:65951589 original size:3 final size:3
Alignment explanation
Indices: 65951575--65951712 Score: 140
Period size: 3 Copynumber: 45.7 Consensus size: 3
65951565 TACATAACAT
* * *
65951575 ATA ATA AAA ATA ATA AT- ATA ATA TATA TACA ATA CATA TATA ACA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA -ATA ATA -ATA -ATA ATA ATA
* *
65951622 ACA TATA CT- ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA ATA
1 ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
**
65951666 ATA ATA ATA ATA ATA ATA ATA ATA AGG ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
65951713 GTAAAAAAAA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
2 7 0.06
3 94 0.82
4 14 0.12
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:65951625 original size:14 final size:15
Alignment explanation
Indices: 65951595--65951633 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
65951585 TAATAATATA
*
65951595 ATATATATACAATAC
1 ATATATATACAAAAC
65951610 ATATATA-ACAAAAC
1 ATATATATACAAAAC
65951624 ATATACTATA
1 ATATA-TATA
65951634 ATAATAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 11 0.52
15 9 0.43
16 1 0.05
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (15 bp):
ATATATATACAAAAC
Found at i:65953745 original size:44 final size:43
Alignment explanation
Indices: 65953566--65954300 Score: 406
Period size: 44 Copynumber: 16.8 Consensus size: 43
65953556 TTTCAGCATA
* ** *
65953566 GCATCCTTGTGTTTATAGGGAACAAGTTAAAGAT-TTCAGCA-TG
1 GCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGT-AG-ATTG
* * * *
65953609 GCATCCCTGTGTTTATAAGGAACAAATCAAAGATAGCAGATCTG
1 GCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGTAGAT-TG
* * * * * *** ** *
65953653 ACATTCCTATGCTTACAACAAAGTAGATCGAAGAT-TTCAGCA-TG
1 GCATCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGT-AG-ATTG
*
65953697 GCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTG
1 GCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGTAGA-TTG
* *
65953741 GCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGTAGATCAG
1 GCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGTAGAT-TG
** * * * * *
65953785 ATATTCCTGTGCTTACAGCGAAGC-AGATCGAAGAT-TTCAGCA-TG
1 GCATCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGT-AG-ATTG
** *
65953829 GCATCCCTGTGTTTATAGGGAACAAGTTAAAGAT-TTCAGCA-TG
1 GCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGT-AG-ATTG
* * * *
65953872 GCATCCCTGTGTTTATAAGGAACAAATCAAAGATAGCAGATCTG
1 GCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGTAGAT-TG
* * * * * *** ** *
65953916 ACATTCCTATGCTTACAACAAAGTAGATCGAAGAT-TTCAGCA-TG
1 GCATCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGT-AG-ATTG
*
65953960 GCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTG
1 GCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGTAGA-TTG
* *
65954004 GCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGTAGATCAG
1 GCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGTAGAT-TG
** * * * * *
65954048 ATATTCCTGTGCTTACAGCGAAGC-AGATCGAAGAT-TTCAGCA-TG
1 GCATCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGT-AG-ATTG
* *
65954092 GCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTG
1 GCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGTAGA-TTG
* **
65954136 GCATCCCTGTGTTTATAGGGAACAAATCGAAGATAACAGATCTG
1 GCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGTAGAT-TG
* * * * * *
65954180 ACATTCCTGTGCTTACAGCGAAGC-AGATCGAAGAT-TTCAGCA-TG
1 GCATCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGT-AG-ATTG
* *
65954224 GCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTG
1 GCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGTAGA-TTG
* * * *
65954268 GCATCCTTGTGCTTATAAGGAACAAATCGAAGA
1 GCATCCCTGTGTTTATAGGGAACAAGTCGAAGA
65954301 CATAGCTGAT
Statistics
Matches: 524, Mismatches: 126, Indels: 83
0.71 0.17 0.11
Matches are distributed among these distances:
42 6 0.01
43 122 0.23
44 340 0.65
45 51 0.10
46 5 0.01
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (43 bp):
GCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGTAGATTG
Found at i:65953800 original size:132 final size:132
Alignment explanation
Indices: 65953471--65954300 Score: 1251
Period size: 132 Copynumber: 6.3 Consensus size: 132
65953461 CAGAGAAACA
* * *
65953471 AGATTTGACATCCCTGTGTTTATAGGGAACAAATCGGAA-AAAGCAGATCTGACACTCCTGTGCT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATC-GAAGATAGCAGATCTGACATTCCTGTGCT
* * * * *
65953535 TACAGCGAAGCAGATCAAATATTTCAGCATAGCATCCTTGTGTTTATAGGGAACAAGTTAAAGAT
65 TACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
*
65953600 -TT
130 AGT
* * *
65953602 CAGCA--TGGCATCCCTGTGTTTATAAGGAACAAATCAAAGATAGCAGATCTGACATTCCTATGC
1 -AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGC
* * *
65953665 TTACAACAAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
64 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
65953730 TAGT
129 TAGT
* * *
65953734 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGTAGATCAGATATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
*
65953799 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTAAAGAT-
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
65953863 TT
131 GT
* * *
65953865 CAGCA--TGGCATCCCTGTGTTTATAAGGAACAAATCAAAGATAGCAGATCTGACATTCCTATGC
1 -AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGC
* * *
65953928 TTACAACAAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
64 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
65953993 TAGT
129 TAGT
* * *
65953997 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGTAGATCAGATATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
65954062 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
65954127 GC
131 GT
*
65954129 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAACAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
65954194 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
65954259 GC
131 GT
* * *
65954261 AGATTTGGCATCCTTGTGCTTATAAGGAACAAATCGAAGA
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGA
65954301 CATAGCTGAT
Statistics
Matches: 634, Mismatches: 54, Indels: 20
0.90 0.08 0.03
Matches are distributed among these distances:
130 4 0.01
131 226 0.36
132 402 0.63
133 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GT
Found at i:65953938 original size:263 final size:263
Alignment explanation
Indices: 65953471--65954300 Score: 1403
Period size: 263 Copynumber: 3.2 Consensus size: 263
65953461 CAGAGAAACA
* * * * * *
65953471 AGATTTGACATCCCTGTGTTTATAGGGAACAAATCGGAA-AAAGCAGATCTGACACTCCTGTGCT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATC-GAAGATAGTAGATCAGATATTCCTGTGCT
* * * *
65953535 TACAGCGAAGCAGATCAAATATTTCAGCATAGCATCCTTGTGTTTATAGGGAACAAGTTAAAGAT
65 TACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTAAAGAT
65953600 TTCAGCATGGCATCCCTGTGTTTATAAGGAACAAATCAAAGATAGCAGATCTGACATTCCTATGC
130 TTCAGCATGGCATCCCTGTGTTTATAAGGAACAAATCAAAGATAGCAGATCTGACATTCCTATGC
65953665 TTACAACAAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
195 TTACAACAAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
65953730 TAGT
260 TAGT
65953734 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGTAGATCAGATATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGTAGATCAGATATTCCTGTGCTT
65953799 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTAAAGATT
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTAAAGATT
65953864 TCAGCATGGCATCCCTGTGTTTATAAGGAACAAATCAAAGATAGCAGATCTGACATTCCTATGCT
131 TCAGCATGGCATCCCTGTGTTTATAAGGAACAAATCAAAGATAGCAGATCTGACATTCCTATGCT
65953929 TACAACAAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
196 TACAACAAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
65953994 AGT
261 AGT
65953997 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGTAGATCAGATATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGTAGATCAGATATTCCTGTGCTT
* *
65954062 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTAAAGATT
* * * * *
65954127 GCAG-ATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAACAGATCTGACATTCCTGTG
131 TCAGCA--TGGCATCCCTGTGTTTATAAGGAACAAATCAAAGATAGCAGATCTGACATTCCTATG
* * *
65954191 CTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAG
194 CTTACAACAAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAG
*
65954256 ATAGC
259 ATAGT
* * *
65954261 AGATTTGGCATCCTTGTGCTTATAAGGAACAAATCGAAGA
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGA
65954301 CATAGCTGAT
Statistics
Matches: 540, Mismatches: 24, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
262 4 0.01
263 380 0.70
264 156 0.29
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (263 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGTAGATCAGATATTCCTGTGCTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTAAAGATT
TCAGCATGGCATCCCTGTGTTTATAAGGAACAAATCAAAGATAGCAGATCTGACATTCCTATGCT
TACAACAAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
AGT
Found at i:65954619 original size:205 final size:205
Alignment explanation
Indices: 65954262--65954668 Score: 726
Period size: 205 Copynumber: 2.0 Consensus size: 205
65954252 GAAGATAGCA
* * *
65954262 GATTTGGCATCCTTGTGCTTATAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGGTTT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGGCTT
*
65954327 ACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGC
66 ACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGC
* *
65954392 GTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTTATATGTTTATACT-AAACA
131 GTCTCCATATTCGACAGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAACA
65954456 GATCCAAGGT
196 GATCCAAGGT
65954466 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACG-GCT
65954531 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
65 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* *
65954596 TGTCTCCATATTCGACAGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAGC
130 CGTCTCCATATTCGACAGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAAC
65954661 AGATCCAA
195 AGATCCAA
65954669 AGGAACAAAT
Statistics
Matches: 193, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
204 59 0.31
205 123 0.64
206 11 0.06
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (205 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGGCTT
ACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGC
GTCTCCATATTCGACAGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAACA
GATCCAAGGT
Found at i:65954790 original size:180 final size:180
Alignment explanation
Indices: 65954488--65954848 Score: 641
Period size: 180 Copynumber: 2.0 Consensus size: 180
65954478 TTGTGCTTAC
65954488 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGAT
1 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGAT
*
65954553 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGTGTCTCCATATTCGACAGAGAG
66 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACAGAGAG
** * *
65954618 CAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAGCAGATCCA
131 CAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAACCAGATCCA
65954668 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGAT
1 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGAT
* * *
65954733 GATTTGGCATCTCTGTATTGTCAGAGAAGAAATCGAAGTTTGGCGTCTCTATATTCGACGGAGAG
66 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACAGAGAG
*
65954798 CAGACACATAGCAGATCTAACTTTCAGATGTTTATACTGAACCAGATCCA
131 CAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAACCAGATCCA
65954848 A
1 A
65954849 GATGATTTGG
Statistics
Matches: 172, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
180 172 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (180 bp):
AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGAT
GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACAGAGAG
CAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAACCAGATCCA
Found at i:65955045 original size:386 final size:384
Alignment explanation
Indices: 65954284--65955054 Score: 1301
Period size: 386 Copynumber: 2.0 Consensus size: 384
65954274 TTGTGCTTAT
* * *
65954284 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGGTTTACGCTGAAGCAAATCTAAGATG
1 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGGCTTACGATGAAGCAAATCTAAGATG
65954349 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGC
66 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGC
** * *
65954414 AGACACATAGCAGATCTGGCCTTTATATGTTTATACTAAACAGATCCAAGGTGATTTGGCATCCT
131 AGACACATAGCAGATCTGAACTTTAGATGTTTATACTAAACAGATCCAAGATGATTTGGCATCCT
* *
65954479 TGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAA
196 TGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACATGCTTACAATGAAGCAA
* *
65954544 ATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGTGTCTCCATATTC
261 ACCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTC
** * * *
65954609 GACAGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAGCAGATCCA
326 GACAGAGAGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCA
65954668 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGAT
1 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACG-GCTTACGATGAAGCAAATCTAAGAT
* *
65954733 GATTTGGCATCTCTGTATTGTCAGAGAAGAAATCGAAGTTTGGCGTCTCTATATTCGACGGAGAG
65 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAG
*
65954798 CAGACACATAGCAGATCT-AACTTTCAGATGTTTATACTGAACCAGATCCAAGATGATTTGGCAT
130 CAGACACATAGCAGATCTGAACTTT-AGATGTTTATACT-AAACAGATCCAAGATGATTTGGCAT
* *
65954862 TCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACATGCTTACAATGAAG
193 CCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACATGCTTACAATGAAG
65954927 CAAACCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATA
258 CAAACCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATA
* *
65954992 TTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCA
323 TTCGACAGAGAGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCA
65955054 A
1 A
65955055 GATGGTTTGG
Statistics
Matches: 361, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
384 42 0.12
385 116 0.32
386 203 0.56
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (384 bp):
AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGGCTTACGATGAAGCAAATCTAAGATG
ATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGC
AGACACATAGCAGATCTGAACTTTAGATGTTTATACTAAACAGATCCAAGATGATTTGGCATCCT
TGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACATGCTTACAATGAAGCAA
ACCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTC
GACAGAGAGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCA
Found at i:65955182 original size:206 final size:206
Alignment explanation
Indices: 65954668--65955169 Score: 826
Period size: 206 Copynumber: 2.4 Consensus size: 206
65954658 AGCAGATCCA
65954668 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGAT
1 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGAT
* *
65954733 GATTTGGCATCTCTGTATTGTCAGAGAAGAAATCGAAGTTTGGCGTCTCTATATTCGACGGAGAG
66 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAG
* * * *
65954798 CAGACACATAGCAGATCTAACTTTCAGATGTTTATACTGAACCAGATCCAAGATGATTTGGCATT
131 CAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAACCAGATCCAAGATGATTTGGCATC
*
65954863 CTTGTGTTTAC
196 CTTGTGCTTAC
* * *
65954874 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACATGCTTACAATGAAGCAAACCTAAGAT
1 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGAT
*
65954939 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGG
66 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAG
* * *
65955004 CAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGTATC
131 CAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAACCAGATCCAAGATGATTTGGCATC
65955069 CTTGTGCTTAC
196 CTTGTGCTTAC
* * *
65955080 AAGGAGCAAATCGAAGACATA-CTTGATTTGGTTTTCGCGTGCTTACGATGAAGCAAATCTAAGA
1 AAGGAACAAATCGAAGACATAGC-TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGA
*
65955144 TGATTTGGCATCTTTGTATTGTCAGA
65 TGATTTGGCATCTCTGTATTGTCAGA
65955170 AAATAGATCG
Statistics
Matches: 274, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
205 1 0.00
206 273 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGAT
GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAG
CAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAACCAGATCCAAGATGATTTGGCATC
CTTGTGCTTAC
Found at i:65955596 original size:19 final size:19
Alignment explanation
Indices: 65955572--65955669 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
65955562 AATCTTTAAG
65955572 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
65955591 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
65955610 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
65955627 GGTATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
65955646 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
65955667 GAT
1 GAT
65955670 CTTGTAATAT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 15 0.21
19 47 0.66
21 9 0.13
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:65955619 original size:36 final size:37
Alignment explanation
Indices: 65955572--65955669 Score: 135
Period size: 36 Copynumber: 2.6 Consensus size: 37
65955562 AATCTTTAAG
65955572 GATATGCAATCTTAGATATGATATGCAATATTAGATAT
1 GATA-GCAATCTTAGATATGATATGCAATATTAGATAT
* *
65955610 GATA-CAATCTTAGATATGGTATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATATTAGATAT
65955646 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
65955670 CTTGTAATAT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
36 34 0.64
38 11 0.21
40 8 0.15
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATATTAGATAT
Found at i:65959487 original size:22 final size:21
Alignment explanation
Indices: 65959449--65959490 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
65959439 TCAATAAAAC
65959449 ATCATTCAAATCCAATTTATA
1 ATCATTCAAATCCAATTTATA
**
65959470 ATCATGTCAAATTTAATTTAT
1 ATCAT-TCAAATCCAATTTAT
65959491 TTTGCCTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.40, C:0.14, G:0.02, T:0.43
Consensus pattern (21 bp):
ATCATTCAAATCCAATTTATA
Found at i:65960195 original size:40 final size:39
Alignment explanation
Indices: 65960140--65960261 Score: 131
Period size: 40 Copynumber: 3.1 Consensus size: 39
65960130 ACCAGTTTGG
*
65960140 CACCCAGTGCCTTATCGGATAATTCGAAGTAATAGATTGA
1 CACCCAGTGCCTTATCGGATAAATCGAAGTAATA-ATTGA
* * *
65960180 CACCCAGTGTCTTATCGGCTAAACCGAAGT-A-AATTGA
1 CACCCAGTGCCTTATCGGATAAATCGAAGTAATAATTGA
* * * *
65960217 CACCCAATGCCTCATCGAATAAATCTGAAGTAGTAAATTGA
1 CACCCAGTGCCTTATCGGATAAATC-GAAGTAAT-AATTGA
65960258 CACC
1 CACC
65960262 GAATGTCTCA
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
37 24 0.36
38 6 0.09
39 1 0.01
40 26 0.39
41 10 0.15
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (39 bp):
CACCCAGTGCCTTATCGGATAAATCGAAGTAATAATTGA
Found at i:65961109 original size:11 final size:10
Alignment explanation
Indices: 65961078--65961151 Score: 58
Period size: 11 Copynumber: 6.8 Consensus size: 10
65961068 GCCTTTCTCC
65961078 TTTTCTTTCCT
1 TTTTCTTT-CT
65961089 TTTTCTTTCT
1 TTTTCTTTCT
65961099 TTTTCCTTTCT
1 TTTT-CTTTCT
*
65961110 GTTTCGTTTCT
1 TTTTC-TTTCT
* *
65961121 ATCTTGTTTCT
1 -TTTTCTTTCT
*
65961132 TTTACTATTTCT
1 TTT--TCTTTCT
65961144 TTTTCTTT
1 TTTTCTTT
65961152 TATTTAATTG
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
10 13 0.25
11 27 0.53
12 11 0.22
ACGTcount: A:0.04, C:0.20, G:0.04, T:0.72
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:65967968 original size:26 final size:26
Alignment explanation
Indices: 65967932--65968041 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
65967922 TGATACTAAT
65967932 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
65967958 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
65967984 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
65968010 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
65968036 TGATAA
1 TGATAA
65968042 GAATTCCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:65970079 original size:137 final size:137
Alignment explanation
Indices: 65969833--65970119 Score: 538
Period size: 137 Copynumber: 2.1 Consensus size: 137
65969823 GAGTAGTCTC
65969833 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
65969898 TGTTATCTGGATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
65969963 ACTGTTA
131 ACTGTTA
65969970 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
65970035 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
65970100 ACTGTTA
131 ACTGTTA
**
65970107 CCTGAATGGGCTT
1 CCCAAATGGGCTT
65970120 AGGCCCAATA
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:65971359 original size:18 final size:17
Alignment explanation
Indices: 65971330--65971378 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
65971320 GTTTTAATCT
*
65971330 TAGTACATATATTTTATTA
1 TAGTATATAT-TTTTA-TA
65971349 TACGTATATATTTTTATA
1 TA-GTATATATTTTTATA
65971367 TAGTAT-TATTTT
1 TAGTATATATTTT
65971379 CGTATTATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 6 0.21
17 4 0.14
18 4 0.14
19 7 0.25
20 7 0.25
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (17 bp):
TAGTATATATTTTTATA
Found at i:65971376 original size:16 final size:19
Alignment explanation
Indices: 65971336--65971378 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
65971326 ATCTTAGTAC
65971336 ATATA-TTTTATTATACGT
1 ATATATTTTTATTATACGT
65971354 ATATATTTTTA-TATA-GT
1 ATATATTTTTATTATACGT
65971371 AT-TATTTT
1 ATATATTTT
65971379 CGTATTATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.25
17 4 0.17
18 9 0.38
19 5 0.21
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (19 bp):
ATATATTTTTATTATACGT
Found at i:65971836 original size:21 final size:21
Alignment explanation
Indices: 65971812--65971863 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
65971802 ACTATTATTT
* *
65971812 TATTTATTTTTATTCCTAGTA
1 TATTTATTTTTAATACTAGTA
* *
65971833 TATTTATTATTAATATTAGTA
1 TATTTATTTTTAATACTAGTA
*
65971854 TATGTATTTT
1 TATTTATTTT
65971864 ATTATGCGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.62
Consensus pattern (21 bp):
TATTTATTTTTAATACTAGTA
Found at i:65971975 original size:20 final size:22
Alignment explanation
Indices: 65971934--65971982 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
65971924 TACTTATTAT
*
65971934 TTTATTTTAATATTATTATGTA
1 TTTATTTTAATAATATTATGTA
65971956 TTTATTTTAA-AATA-TATGTA
1 TTTATTTTAATAATATTATGTA
*
65971976 TATATTT
1 TTTATTT
65971983 GTGTAGTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 12 0.48
21 3 0.12
22 10 0.40
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
TTTATTTTAATAATATTATGTA
Found at i:65971981 original size:24 final size:22
Alignment explanation
Indices: 65971934--65971982 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
65971924 TACTTATTAT
* *
65971934 TTTATTTTAATATTATTATGTA
1 TTTATTTTAAAATTATTATATA
65971956 TTTATTTTAAAATATATGTATATA
1 TTTATTTTAAAAT-TAT-TATATA
65971980 TTT
1 TTT
65971983 GTGTAGTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 12 0.52
23 3 0.13
24 8 0.35
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
TTTATTTTAAAATTATTATATA
Found at i:65985388 original size:13 final size:13
Alignment explanation
Indices: 65985345--65985388 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
65985335 GTAGTTATCC
65985345 CTTTTAACAATGT
1 CTTTTAACAATGT
65985358 CGTTTCTAA-AAT-T
1 C-TTT-TAACAATGT
65985371 CTTTTAACAATGT
1 CTTTTAACAATGT
65985384 CTTTT
1 CTTTT
65985389 TTAAAGTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
11 3 0.11
12 6 0.22
13 9 0.33
14 6 0.22
15 3 0.11
ACGTcount: A:0.27, C:0.16, G:0.07, T:0.50
Consensus pattern (13 bp):
CTTTTAACAATGT
Found at i:65989399 original size:17 final size:17
Alignment explanation
Indices: 65989374--65989410 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
65989364 AGGAATTCAT
*
65989374 TTATTATAATATTTAAA
1 TTATCATAATATTTAAA
*
65989391 TTATCATAATATTTTAA
1 TTATCATAATATTTAAA
65989408 TTA
1 TTA
65989411 AAATTATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
TTATCATAATATTTAAA
Found at i:65991880 original size:2 final size:2
Alignment explanation
Indices: 65991873--65991901 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
65991863 CCCTAATACC
65991873 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
65991902 TTCAAGCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65992779 original size:44 final size:44
Alignment explanation
Indices: 65992690--65992780 Score: 121
Period size: 44 Copynumber: 2.1 Consensus size: 44
65992680 AGTATTTTTT
* * * * *
65992690 ATTTATACATTCAATTAAGTTTGTGCAAAATATAATATATTTTA
1 ATTTATACATTCAATAAACTTTGTGCAAAATAAAAAATATATTA
65992734 ATTTATACATTCAATAAACTTTGTGCAAAATAAAAAACTA-ATTA
1 ATTTATACATTCAATAAACTTTGTGCAAAATAAAAAA-TATATTA
65992778 ATT
1 ATT
65992781 GAATCTTGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
44 39 0.95
45 2 0.05
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (44 bp):
ATTTATACATTCAATAAACTTTGTGCAAAATAAAAAATATATTA
Found at i:65996278 original size:17 final size:18
Alignment explanation
Indices: 65996258--65996295 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
65996248 TTAGAATTGG
*
65996258 ATTGAG-AAAATAATTTA
1 ATTGAGTAAAATAATTAA
*
65996275 ATTGAGTAAATTAATTAA
1 ATTGAGTAAAATAATTAA
65996293 ATT
1 ATT
65996296 TAGGGTAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (18 bp):
ATTGAGTAAAATAATTAA
Found at i:65997130 original size:5 final size:5
Alignment explanation
Indices: 65997120--65997148 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
65997110 ATATAAATAT
65997120 TATTA TATTA TATTA TATTA TATTA -ATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA
65997149 AATAAAGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:65997154 original size:4 final size:4
Alignment explanation
Indices: 65997147--65997186 Score: 53
Period size: 4 Copynumber: 9.2 Consensus size: 4
65997137 TTATATTAAT
65997147 TAAA TAAA GTAAA TAAAA TAAA TAAA TAAA TAAA TCAAA T
1 TAAA TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA T-AAA T
65997187 TATGAAAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
4 21 0.64
5 12 0.36
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:65997159 original size:9 final size:8
Alignment explanation
Indices: 65997147--65997186 Score: 53
Period size: 9 Copynumber: 4.6 Consensus size: 8
65997137 TTATATTAAT
65997147 TAAATAAA
1 TAAATAAA
65997155 GTAAATAAAA
1 -TAAAT-AAA
65997165 TAAATAAA
1 TAAATAAA
65997173 TAAATAAA
1 TAAATAAA
65997181 TCAAAT
1 T-AAAT
65997187 TATGAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 12 0.41
9 14 0.48
10 3 0.10
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (8 bp):
TAAATAAA
Found at i:65997172 original size:13 final size:12
Alignment explanation
Indices: 65997147--65997186 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 12
65997137 TTATATTAAT
65997147 TAAATAAAGTAAA
1 TAAATAAA-TAAA
65997160 TAAAATAAATAAA
1 T-AAATAAATAAA
65997173 TAAATAAATCAAA
1 TAAATAAAT-AAA
65997186 T
1 T
65997187 TATGAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 8 0.32
13 10 0.40
14 7 0.28
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (12 bp):
TAAATAAATAAA
Found at i:65998053 original size:5 final size:5
Alignment explanation
Indices: 65998047--65998085 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
65998037 TGTGGTATTG
* *
65998047 AATTG AATTG AATTC AATTC AATTC AATTC AATTC AATT
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATT
65998086 ATAAGTATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (5 bp):
AATTC
Found at i:66002155 original size:16 final size:17
Alignment explanation
Indices: 66002115--66002158 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
66002105 TTTAGTCCTA
66002115 TATTTATTTTATTATTC
1 TATTTATTTTATTATTC
*
66002132 TATATATTTT-TTATT-
1 TATTTATTTTATTATTC
66002147 TGATTTATTTTA
1 T-ATTTATTTTA
66002159 ATTTTACTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 1 0.04
16 13 0.57
17 9 0.39
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (17 bp):
TATTTATTTTATTATTC
Found at i:66002270 original size:19 final size:18
Alignment explanation
Indices: 66002235--66002286 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
66002225 TTAATTCTCT
*
66002235 CATA-ATTATTATTTTTTA
1 CATATATTA-TATATTTTA
*
66002253 TATATATTATCATATTTTA
1 CATATATTAT-ATATTTTA
66002272 CATATATTATATATT
1 CATATATTATATATT
66002287 CATTTACGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 9 0.31
19 20 0.69
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.58
Consensus pattern (18 bp):
CATATATTATATATTTTA
Found at i:66002380 original size:19 final size:19
Alignment explanation
Indices: 66002335--66002382 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
66002325 TTATATGATA
* *
66002335 TATTTATTATATTATTTCC
1 TATTTATTATATTATATAC
* * *
66002354 CATATATTTTATTATATAC
1 TATTTATTATATTATATAC
66002373 TATTTATTAT
1 TATTTATTAT
66002383 GTTTTACATG
Statistics
Matches: 21, Mismatches: 8, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTTATTATATTATATAC
Found at i:66002400 original size:18 final size:16
Alignment explanation
Indices: 66002342--66002413 Score: 56
Period size: 16 Copynumber: 4.3 Consensus size: 16
66002332 ATATATTTAT
**
66002342 TATATTATTTCCCATA
1 TATATTATTTTACATA
*
66002358 TATTTTATTATATAC-TA
1 TATATTATT-T-TACATA
* *
66002375 TTTATTATGTTTTACATG
1 TATATTA--TTTTACATA
66002393 TATATTATTTTACATA
1 TATATTATTTTACATA
66002409 TATAT
1 TATAT
66002414 ATTATGTATA
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
16 21 0.49
17 11 0.26
18 9 0.21
19 2 0.05
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.57
Consensus pattern (16 bp):
TATATTATTTTACATA
Found at i:66005990 original size:19 final size:19
Alignment explanation
Indices: 66005966--66006006 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
66005956 TGTATACAGC
66005966 TATATATTAA-ATTAAAATT
1 TATATA-TAATATTAAAATT
*
66005985 TATATATAATTTTAAAATT
1 TATATATAATATTAAAATT
66006004 TAT
1 TAT
66006007 TCTATTAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATATATAATATTAAAATT
Found at i:66007018 original size:26 final size:26
Alignment explanation
Indices: 66006989--66007041 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
66006979 AGTGATAATT
66006989 TATTCATCAC-TTAATTAAATATAAAA
1 TATTCATCACTTTAATT-AATATAAAA
* * *
66007015 TATTTATCTCTTTAATTAATTTAAAA
1 TATTCATCACTTTAATTAATATAAAA
66007041 T
1 T
66007042 CATTAGAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.47
Consensus pattern (26 bp):
TATTCATCACTTTAATTAATATAAAA
Found at i:66007557 original size:11 final size:12
Alignment explanation
Indices: 66007537--66007561 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
66007527 TATAAATAAC
66007537 TTTTCTTTTTTT
1 TTTTCTTTTTTT
66007549 TTTTCTTTTTTT
1 TTTTCTTTTTTT
66007561 T
1 T
66007562 GTCTCGGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:66008215 original size:42 final size:42
Alignment explanation
Indices: 66008169--66008358 Score: 148
Period size: 42 Copynumber: 4.5 Consensus size: 42
66008159 ACATGGTGAA
* * *
66008169 GTGGAGATCAATTCCGATTTTTTTTACCACCAACATGACAAG
1 GTGGAGATCAGTTCCGATTTTTTTCAACACCAACATGACAAG
* * * * *
66008211 GTGGAGTTCAGTTCTGATTTTTTTCAACATCAACACGACGAG
1 GTGGAGATCAGTTCCGATTTTTTTCAACACCAACATGACAAG
** * * * ** *
66008253 GCAGAGATTAGTTCCGGGTTTTTTTCAACACTAATGTGGCAAG
1 GTGGAGATCAGTTCC-GATTTTTTTCAACACCAACATGACAAG
*** * * *
66008296 GCAAAGATCAATTCCGATTTTTTT-AACACCAATATGGCAAG
1 GTGGAGATCAGTTCCGATTTTTTTCAACACCAACATGACAAG
* *
66008337 ATGGAGATCAGTTCCAATTTTT
1 GTGGAGATCAGTTCCGATTTTT
66008359 GCCTCTCTTT
Statistics
Matches: 114, Mismatches: 33, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
41 31 0.27
42 52 0.46
43 31 0.27
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (42 bp):
GTGGAGATCAGTTCCGATTTTTTTCAACACCAACATGACAAG
Found at i:66008398 original size:28 final size:30
Alignment explanation
Indices: 66008357--66008428 Score: 121
Period size: 28 Copynumber: 2.5 Consensus size: 30
66008347 GTTCCAATTT
66008357 TTGCCTCTCTTTCAAAGGATAGTTATTTTC
1 TTGCCTCTCTTTCAAAGGATAGTTATTTTC
66008387 TTGCCTC-C-TTCAAAGGATAGTTATTTTC
1 TTGCCTCTCTTTCAAAGGATAGTTATTTTC
*
66008415 TTGCCTATCTTTCA
1 TTGCCTCTCTTTCA
66008429 CAGTGATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 26 0.67
29 2 0.05
30 11 0.28
ACGTcount: A:0.19, C:0.22, G:0.12, T:0.46
Consensus pattern (30 bp):
TTGCCTCTCTTTCAAAGGATAGTTATTTTC
Found at i:66010603 original size:22 final size:23
Alignment explanation
Indices: 66010547--66010603 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 23
66010537 CAACTCGTTT
66010547 GAGCTTACTA-TTCAGCTCAATA
1 GAGCTTACTATTTCAGCTCAATA
*
66010569 GAGCTTACCATTTCAGCT-AATA
1 GAGCTTACTATTTCAGCTCAATA
*
66010591 GAGTTTACTATTT
1 GAGCTTACTATTT
66010604 ATCAGCTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 24 0.77
23 7 0.23
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (23 bp):
GAGCTTACTATTTCAGCTCAATA
Found at i:66010821 original size:20 final size:20
Alignment explanation
Indices: 66010768--66010867 Score: 91
Period size: 20 Copynumber: 5.0 Consensus size: 20
66010758 GAATAAGCTA
* *
66010768 TGTTGAAATGAATGAATTAC
1 TGTTGATATGGATGAATTAC
66010788 TGTTGATATGGATGAATTAC
1 TGTTGATATGGATGAATTAC
66010808 TGTT-ATTACT-GATGAATTACC
1 TGTTGA-TA-TGGATGAATTA-C
* *
66010829 GGTT-ATATGGATGAACTAC
1 TGTTGATATGGATGAATTAC
*
66010848 TAGTT-ATATGAATGAATTAC
1 T-GTTGATATGGATGAATTAC
66010868 AGTTTATACG
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
19 3 0.04
20 59 0.87
21 6 0.09
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (20 bp):
TGTTGATATGGATGAATTAC
Found at i:66010875 original size:40 final size:40
Alignment explanation
Indices: 66010775--66010875 Score: 125
Period size: 40 Copynumber: 2.5 Consensus size: 40
66010765 CTATGTTGAA
* * *
66010775 ATGAATGAATTACTGTTGATATGGATGAATTACTGTTATT
1 ATGAATGAATTACAGTTTATATGGATGAACTACTGTTATT
* *
66010815 ACTG-ATGAATTACCGGTTATATGGATGAACTACTAGTTA-T
1 A-TGAATGAATTACAGTTTATATGGATGAACTACT-GTTATT
66010855 ATGAATGAATTACAGTTTATA
1 ATGAATGAATTACAGTTTATA
66010876 CGAATAAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
39 2 0.04
40 44 0.85
41 6 0.12
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.39
Consensus pattern (40 bp):
ATGAATGAATTACAGTTTATATGGATGAACTACTGTTATT
Found at i:66016169 original size:27 final size:25
Alignment explanation
Indices: 66016101--66016208 Score: 80
Period size: 27 Copynumber: 4.2 Consensus size: 25
66016091 TGAGCAGTTT
* *
66016101 TTATTTATTTTAAGTTCTTTTTTCATA
1 TTATTTATTTTAA-AT-TGTTTTCATA
*
66016128 TAGTATTTGTTTTAAATTGTTATATCATA
1 T--TATTTATTTTAAATTGTT-T-TCATA
* *
66016157 TTATTTATTTTAATTTGTTTT-GTA
1 TTATTTATTTTAAATTGTTTTCATA
*
66016181 TTA-TTATTTTAAATTATTTT-ATA
1 TTATTTATTTTAAATTGTTTTCATA
66016204 -TATTT
1 TTATTT
66016209 TAAATTTCTT
Statistics
Matches: 67, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
22 2 0.03
23 19 0.28
24 5 0.07
25 1 0.01
26 1 0.01
27 20 0.30
28 2 0.03
29 17 0.25
ACGTcount: A:0.27, C:0.03, G:0.06, T:0.65
Consensus pattern (25 bp):
TTATTTATTTTAAATTGTTTTCATA
Found at i:66016340 original size:26 final size:26
Alignment explanation
Indices: 66016262--66016342 Score: 103
Period size: 25 Copynumber: 3.2 Consensus size: 26
66016252 CATTTTAAAA
* * *
66016262 TTTATATATTATTTATTCTGAACCGT
1 TTTATATATTATTTATTTTAAACCTT
*
66016288 TTCATATATTA-TTATTTTAAACCTT
1 TTTATATATTATTTATTTTAAACCTT
*
66016313 TTTATAAATTATTTATTTTAAA-CTT
1 TTTATATATTATTTATTTTAAACCTT
66016338 TTTAT
1 TTTAT
66016343 TTTGTACTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
25 28 0.58
26 20 0.42
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (26 bp):
TTTATATATTATTTATTTTAAACCTT
Found at i:66017613 original size:53 final size:53
Alignment explanation
Indices: 66017542--66017675 Score: 198
Period size: 53 Copynumber: 2.5 Consensus size: 53
66017532 TCATACCAAA
* *
66017542 GCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTATCACATTATACCGAT
1 GCCATAGCCCA-ACTATGGTCTTATACGGAATCACATTATCACATTACACCGAT
* *
66017595 GCCATAGCCCAACTATGGTCTTATACGGAGTCACATTATCACATTGCACCGAT
1 GCCATAGCCCAACTATGGTCTTATACGGAATCACATTATCACATTACACCGAT
* *
66017648 GCCATAGCCCAGCTATGGTCTTAAACGG
1 GCCATAGCCCAACTATGGTCTTATACGG
66017676 GCACACTTAT
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
52 2 0.03
53 72 0.97
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
GCCATAGCCCAACTATGGTCTTATACGGAATCACATTATCACATTACACCGAT
Found at i:66019764 original size:127 final size:127
Alignment explanation
Indices: 66019538--66019783 Score: 305
Period size: 127 Copynumber: 1.9 Consensus size: 127
66019528 TCGACTTAAA
* * * * *
66019538 TAAAACAAAGGCGATGTTTGATGTTTAGAAATTCGAGGGATCGTGCCCTAACGTGTTAGGTTTCG
1 TAAAACAAAAGCGATGATTGATGTTTAGAAATTCGAGGAATCGTGCACTAACGTGCTAGGTTTCG
** ** * *
66019603 ATCTTTCATTTATTTAAATAATCAAATTTTCCTTTAAAATCCCGTCCACGTTTTCTAAACTC
66 ATCTTTCATTTATCCAAATAATCAAACATCCCTTTAAAATCCCGTCCACATTTTCTAAACTC
* * * *
66019665 TAAAACAAAAGCGATGATTGATGTTTGGGAATTCG-GGAAATCGTGCACTAATGTGCTGGGTTTC
1 TAAAACAAAAGCGATGATTGATGTTTAGAAATTCGAGG-AATCGTGCACTAACGTGCTAGGTTTC
* * * *
66019729 GATTTTTTATTTATCCAAATAATCAAACATCCCTTTAAATTTCCGTCCACATTTT
65 GATCTTTCATTTATCCAAATAATCAAACATCCCTTTAAAATCCCGTCCACATTTT
66019784 TCTTCAAAAA
Statistics
Matches: 99, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
126 2 0.02
127 97 0.98
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (127 bp):
TAAAACAAAAGCGATGATTGATGTTTAGAAATTCGAGGAATCGTGCACTAACGTGCTAGGTTTCG
ATCTTTCATTTATCCAAATAATCAAACATCCCTTTAAAATCCCGTCCACATTTTCTAAACTC
Found at i:66029572 original size:27 final size:27
Alignment explanation
Indices: 66029542--66029593 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
66029532 CCCAAAACGG
*
66029542 GTCGAGCCTGTCAAGTAGGCACGACTA
1 GTCGAGCCTGACAAGTAGGCACGACTA
* * *
66029569 GTCGTGCCTGACAGGTAGGCTCGAC
1 GTCGAGCCTGACAAGTAGGCACGAC
66029594 ACCCCACCTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.19
Consensus pattern (27 bp):
GTCGAGCCTGACAAGTAGGCACGACTA
Found at i:66029631 original size:24 final size:24
Alignment explanation
Indices: 66029597--66029642 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
66029587 GCTCGACACC
*
66029597 CCACCTACTGCTGCTGCTGCCGCT
1 CCACCTACTGCTGCTACTGCCGCT
*
66029621 CCACCTGCTGCTGCTACTGCCG
1 CCACCTACTGCTGCTACTGCCG
66029643 TTGCTTTTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.09, C:0.46, G:0.22, T:0.24
Consensus pattern (24 bp):
CCACCTACTGCTGCTACTGCCGCT
Found at i:66029822 original size:16 final size:16
Alignment explanation
Indices: 66029801--66029835 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
66029791 GGAGAATGAG
* *
66029801 AAGAAGAAGGAAGAAA
1 AAGAAGAAGAAAAAAA
66029817 AAGAAGAAGAAAAAAA
1 AAGAAGAAGAAAAAAA
66029833 AAG
1 AAG
66029836 GTAATGTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AAGAAGAAGAAAAAAA
Found at i:66030243 original size:99 final size:100
Alignment explanation
Indices: 66030033--66030522 Score: 336
Period size: 113 Copynumber: 4.7 Consensus size: 100
66030023 TTGTTAGTAT
*
66030033 TTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATAATATATTTTAAAAAAATAATTTTATAGTT
1 TTAGTGTATTAGTGTATTGTGATTTTTTTAGTAAT-ATAT-TTTTAAAAAAATAATTTTATAGCT
* *
66030098 GATTAGGTTA-TA-TAAATT--G-TTAGTGTT-TAGT--AGT-
64 -ATT---TTATTAGTAATTTAAGATTAG-GTTATA-TAAATTG
*
66030132 TTAGTGTATTAGTGTATTGCGATTTTTTTAGTAATATATTTTTAAAAAAATAATTTTATAGCTAT
1 TTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATATATTTTTAAAAAAATAATTTTATAGCTAT
66030197 TTTATTAGTAATTTAAGATTAGGTTATATAAATTG
66 TTTATTAGTAATTTAAGATTAGGTTATATAAATTG
66030232 TTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTAATTTTTTTAGTAATATA-TTTTAAAAAAA
1 TTAGTG--TA-----TTAGTGTATT-GTG-A-T-T----TTTTTAGTAATATATTTTTAAAAAAA
66030296 -AATTTTATAGCTATTTTATTAGTAATTTAAGATTAGGTTATATAAATTG
51 TAATTTTATAGCTATTTTATTAGTAATTTAAGATTAGGTTATATAAATTG
** * * **
66030345 TTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTTAGTA-ATATATTTTAAAAAA
1 TTAGTG--TA-----TTAGTGTATT-GTG-A-T-T--TTTTTAGTAATATAT-TTTTAA--AAAA
* *
66030409 ATATTTTTATAGCTATTTTATTAGGAATTTAAGATTAGGTTATAT--ATTG
50 ATAATTTTATAGCTATTTTATTAGTAATTTAAGATTAGGTTATATAAATTG
* *
66030458 TTA--G--TTAGTGTATTGTGATTTTTTTTTTAGTAATGTA--TTTAAAAAAATAATTTTATAGT
1 TTAGTGTATTAGTGTATTGTGA---TTTTTTTAGTAATATATTTTTAAAAAAATAATTTTATAGC
66030517 TATTTT
63 TATTTT
66030523 GTGTTAGTAT
Statistics
Matches: 335, Mismatches: 24, Indels: 68
0.78 0.06 0.16
Matches are distributed among these distances:
93 3 0.01
94 2 0.01
95 26 0.08
96 3 0.01
97 30 0.09
98 10 0.03
99 44 0.13
100 8 0.02
101 4 0.01
102 14 0.04
107 10 0.03
108 2 0.01
109 1 0.00
110 2 0.01
111 11 0.03
112 3 0.01
113 91 0.27
114 16 0.05
115 55 0.16
ACGTcount: A:0.33, C:0.01, G:0.15, T:0.52
Consensus pattern (100 bp):
TTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATATATTTTTAAAAAAATAATTTTATAGCTAT
TTTATTAGTAATTTAAGATTAGGTTATATAAATTG
Found at i:66030354 original size:113 final size:114
Alignment explanation
Indices: 66030098--66030462 Score: 637
Period size: 115 Copynumber: 3.2 Consensus size: 114
66030088 TTTTATAGTT
* **
66030098 GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGCGATTTTTTTAG
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTAATTTTTTTAG
66030163 TAATATATTTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
66 TAATATA-TTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
66030213 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTAATTTTTTTAG
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTAATTTTTTTAG
66030278 TAATATATTTTAAAAAAA-AATTTTATAGCTATTTTATTAGTAATTTAA
66 TAATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
*
66030326 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTTA
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGT-AATTTTTTTA
* *
66030391 GTAATATATTTTAAAAAAATATTTTTATAGCTATTTTATTAGGAATTTAA
65 GTAATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
66030441 GATTAGGTTATAT--ATTGTTAGT
1 GATTAGGTTATATAAATTGTTAGT
66030463 TAGTGTATTG
Statistics
Matches: 242, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
113 93 0.38
114 39 0.16
115 110 0.45
ACGTcount: A:0.32, C:0.01, G:0.16, T:0.51
Consensus pattern (114 bp):
GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTAATTTTTTTAG
TAATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
Found at i:66030608 original size:15 final size:16
Alignment explanation
Indices: 66030579--66030610 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
66030569 TGTGATTTTT
66030579 TAATGTAATTTTTATA
1 TAATGTAATTTTTATA
66030595 TAATGTAA-TTTTATA
1 TAATGTAATTTTTATA
66030610 T
1 T
66030611 TATTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TAATGTAATTTTTATA
Found at i:66032286 original size:2 final size:2
Alignment explanation
Indices: 66032279--66032305 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
66032269 TATGTACGTA
66032279 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
66032306 AATAGTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:66032828 original size:23 final size:22
Alignment explanation
Indices: 66032781--66032837 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
66032771 AAATACATAC
66032781 ATAATATATA-AAATATAAAAT
1 ATAATATATATAAATATAAAAT
*
66032802 ATAATATATATATAT-TAGAAAT
1 ATAATATATATAAATATA-AAAT
66032824 GATAATA-ATATAAA
1 -ATAATATATATAAA
66032838 AAAAACTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 12 0.39
22 13 0.42
23 6 0.19
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (22 bp):
ATAATATATATAAATATAAAAT
Found at i:66032911 original size:19 final size:19
Alignment explanation
Indices: 66032887--66032923 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
66032877 TATAAATAAT
*
66032887 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
66032906 AATGATATTAGAAATATA
1 AATGATATTAGAAATATA
66032924 AATAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:66032981 original size:22 final size:23
Alignment explanation
Indices: 66032955--66033000 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
66032945 AATAACTAAT
66032955 AATAT-TAAAATATATACATAAC
1 AATATGTAAAATATATACATAAC
* *
66032977 AATATGTAAATTGTATACATAAC
1 AATATGTAAAATATATACATAAC
66033000 A
1 A
66033001 TAGTTATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (23 bp):
AATATGTAAAATATATACATAAC
Found at i:66033249 original size:3 final size:3
Alignment explanation
Indices: 66033152--66033236 Score: 93
Period size: 3 Copynumber: 28.3 Consensus size: 3
66033142 GTAGTAGTAG
* *
66033152 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA -AA TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
66033199 TAA TAAA TAA AAA CT-A TAA TAA TAA TAA CAG TAA TAA T
1 TAA T-AA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA T
66033237 TGTATAAATA
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
2 2 0.03
3 63 0.93
4 3 0.04
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:66035167 original size:88 final size:87
Alignment explanation
Indices: 66034887--66035208 Score: 388
Period size: 88 Copynumber: 3.7 Consensus size: 87
66034877 CGGCATGTGA
* * * *
66034887 TCCTGA-GCTCAACTCACTTCTCGCAATATGAGTTGACTCTTT-AAAACAGACATT-AAAAACAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAACAGAAATTGAAAAACAG
*
66034949 AAATTGAAAATAGCTCAGCACGTG
66 AAATTGAAAATACCTCAGCA--TG
* * * *
66034973 AGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAGAGAATTTGAAAAACA
1 -TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAACAGAAATTGAAAAACA
* * *
66035036 G-ATTTCGAAAATACTTCAGCGTG
65 GAAATT-GAAAATACCTCAGCATG
* * *
66035059 CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTGAAAAAAC
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTG-AAAACAGAAATTG-AAAAAC
66035123 AGAAATTGAAAATACCTCAGCATG
64 AGAAATTGAAAATACCTCAGCATG
*
66035147 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAA-CAGAAATTGAAAA
66035209 TTCCCCAGTA
Statistics
Matches: 202, Mismatches: 23, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
85 2 0.01
86 45 0.22
87 53 0.26
88 86 0.43
89 16 0.08
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (87 bp):
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAACAGAAATTGAAAAACAG
AAATTGAAAATACCTCAGCATG
Found at i:66035304 original size:73 final size:73
Alignment explanation
Indices: 66035118--66035422 Score: 407
Period size: 73 Copynumber: 4.2 Consensus size: 73
66035108 ATAAATTGAA
66035118 AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
66035183 ATTTTTTG
66 ATTTTTTG
* * * *
66035191 AAAAGCAGAAATTGAAAATTCCCCAGTATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAA-CAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
66035256 GA-TTTTTG
65 GATTTTTTG
* * * * *
66035264 ACAAATAGAAATTGAAATTACCTCGGCGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
66035329 GATTTTTTTG
65 GA-TTTTTTG
* * * * ** *
66035339 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCATTTCTCTCAATATGAGTT
1 AAA-ACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
66035404 GA-ATTTTG
65 GATTTTTTG
66035412 AAAACAGAAAT
1 AAAACAGAAAT
66035423 AAAAACATTA
Statistics
Matches: 203, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
72 8 0.04
73 72 0.35
74 63 0.31
75 60 0.30
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (73 bp):
AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTG
Found at i:66035421 original size:147 final size:146
Alignment explanation
Indices: 66035118--66035422 Score: 423
Period size: 147 Copynumber: 2.1 Consensus size: 146
66035108 ATAAATTGAA
66035118 AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* ** *
66035183 ATTTTTTGAAAAGCAGAAATTGAAAATTCCCCAGTATGCCCTGAGGCTCAACTCACCTCTCGCAA
66 ATTTTTTGAAAAGCAGAAATTGAAAATACCCCAACATGCCCTGAAGCTCAACTCACCTCTCGCAA
*
66035248 TATGAGTTGATTTTTG
131 TATGAGTTGAATTTTG
* * * * *
66035264 ACAAATAGAAATTGAAATTACCTCGGCGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * ** *
66035329 GATTTTTTTG-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCATTTCTCT
65 GA-TTTTTTGAAAAG-CAGAAATTGAAAATACCCCAACATGCCCTGAAGCTCAACTCACCTCTCG
66035393 CAATATGAGTTGAATTTTG
128 CAATATGAGTTGAATTTTG
66035412 AAAACAGAAAT
1 AAAACAGAAAT
66035423 AAAAACATTA
Statistics
Matches: 138, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
146 1 0.01
147 73 0.53
148 64 0.46
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (146 bp):
AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTGAAAAGCAGAAATTGAAAATACCCCAACATGCCCTGAAGCTCAACTCACCTCTCGCAA
TATGAGTTGAATTTTG
Found at i:66041482 original size:46 final size:46
Alignment explanation
Indices: 66041380--66041596 Score: 201
Period size: 46 Copynumber: 4.7 Consensus size: 46
66041370 AGATTTGTGT
* * * * * *
66041380 GCCAGTGTAAGACCATGTATGAGACATGGCATC-GGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-CGAGATGAGA
*
66041428 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAG-ATGAGA
* * *
66041474 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAGA
* * * * *
66041520 GCCAGTGTCAGACATGTCTGGGACATGCGTCGGCTACGAGAT--GT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAGA
* * *
66041564 GCTAGTGTAAGACATGTAT-GGACATGCGTCAGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGC
66041597 ACGGTTACAT
Statistics
Matches: 145, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
43 13 0.09
44 16 0.11
45 2 0.01
46 86 0.59
47 17 0.12
48 11 0.08
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAGA
Found at i:66055365 original size:46 final size:44
Alignment explanation
Indices: 66055306--66055420 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 44
66055296 ACAGGACAGA
* *
66055306 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
66055352 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* * **
66055396 ATAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
66055421 GTCAAAGACA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
44 34 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.29
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:66055412 original size:44 final size:45
Alignment explanation
Indices: 66055306--66055439 Score: 135
Period size: 46 Copynumber: 3.0 Consensus size: 45
66055296 ACAGGACAGA
* * *
66055306 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* * *
66055352 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
66055396 ATAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
66055440 CAGGATATTG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
44 35 0.48
45 1 0.01
46 37 0.51
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:66059954 original size:20 final size:20
Alignment explanation
Indices: 66059929--66059974 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
66059919 ATTGGGTCTT
66059929 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
66059949 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
66059968 GCCCATA
1 GCCCATA
66059975 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:66059983 original size:19 final size:20
Alignment explanation
Indices: 66059941--66059984 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
66059931 CCATATTAAC
** *
66059941 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
66059961 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
66059980 ACAGT
1 ACAGT
66059985 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:66066439 original size:46 final size:44
Alignment explanation
Indices: 66066380--66066494 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
66066370 ACAGGACAGA
* *
66066380 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
66066426 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
66066470 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
66066495 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:66066475 original size:44 final size:45
Alignment explanation
Indices: 66066380--66066513 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
66066370 ACAGGACAGA
* *
66066380 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
66066426 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
66066470 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
66066514 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:66070106 original size:33 final size:33
Alignment explanation
Indices: 66070069--66070137 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
66070059 AGTGAATAAC
*
66070069 AAAATAATATAAAATGGGCGGGACACAAAAATA
1 AAAATAATATAAAATGGGCGGGAAACAAAAATA
*
66070102 AAAATGATATAAAATGGGCGGGAAACAAAAATA
1 AAAATAATATAAAATGGGCGGGAAACAAAAATA
66070135 AAA
1 AAA
66070138 GAGTTAGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.59, C:0.07, G:0.19, T:0.14
Consensus pattern (33 bp):
AAAATAATATAAAATGGGCGGGAAACAAAAATA
Found at i:66070394 original size:17 final size:17
Alignment explanation
Indices: 66070355--66070394 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
66070345 AGTAATGTTA
*
66070355 AAATATATACATAATAT
1 AAATATATACATAAAAT
* *
66070372 ATATATATATATAAAAT
1 AAATATATACATAAAAT
66070389 AAATAT
1 AAATAT
66070395 TGAAAAATGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATATATACATAAAAT
Found at i:66071274 original size:9 final size:10
Alignment explanation
Indices: 66071258--66071287 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
66071248 CTCAAAAAAG
66071258 GTATTTTTTT
1 GTATTTTTTT
*
66071268 TTATTTTTTT
1 GTATTTTTTT
66071278 GTATTTTTTT
1 GTATTTTTTT
66071288 ACGTTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.10, C:0.00, G:0.07, T:0.83
Consensus pattern (10 bp):
GTATTTTTTT
Found at i:66073044 original size:33 final size:34
Alignment explanation
Indices: 66073007--66073085 Score: 101
Period size: 33 Copynumber: 2.4 Consensus size: 34
66072997 ATTTATCTCA
*
66073007 GTACTCTACTCCTTCCA-ACCCGTATCCACC-CAT
1 GTACTCTACTCCTTCCAGACCCGTATCCACCGC-C
* *
66073040 GTACTCAACTCC-TCCAGAGCCGTATCCACCGCC
1 GTACTCTACTCCTTCCAGACCCGTATCCACCGCC
66073073 GTACTCTACTCCT
1 GTACTCTACTCCT
66073086 CTCGGCCCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
32 4 0.10
33 34 0.87
34 1 0.03
ACGTcount: A:0.20, C:0.44, G:0.10, T:0.25
Consensus pattern (34 bp):
GTACTCTACTCCTTCCAGACCCGTATCCACCGCC
Found at i:66076739 original size:27 final size:27
Alignment explanation
Indices: 66076709--66076771 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
66076699 CCTACCAAGA
* *
66076709 AGGCACAACTAGTCGCGCTTGTCAAAT
1 AGGCACAACTAGTCGAGCCTGTCAAAT
* * *
66076736 AGGCTCAACTAGTTGAGCCTGTCAGAT
1 AGGCACAACTAGTCGAGCCTGTCAAAT
*
66076763 AGGCGCAAC
1 AGGCACAAC
66076772 ATGTATATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.21
Consensus pattern (27 bp):
AGGCACAACTAGTCGAGCCTGTCAAAT
Found at i:66081213 original size:18 final size:18
Alignment explanation
Indices: 66081187--66081377 Score: 167
Period size: 18 Copynumber: 10.6 Consensus size: 18
66081177 AATTGATCGG
*
66081187 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
*
66081205 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAGTCA-A
* *
66081223 -TATTCAGTAACAATTAA
1 TTATTCAGTAACAGTCAA
*
66081240 GTTATTCAGTAGCAGTC-A
1 -TTATTCAGTAACAGTCAA
* *
66081258 TTCATTCAGTGACAATCAA
1 TT-ATTCAGTAACAGTCAA
*
66081277 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAA
* * *
66081295 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAA
66081313 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTC-AA
*
66081332 -TATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* * *
66081349 TTATCCGGTAACAGTCAG
1 TTATTCAGTAACAGTCAA
66081367 TTATTCAGTAA
1 TTATTCAGTAA
66081378 TAATCAGCTA
Statistics
Matches: 140, Mismatches: 23, Indels: 20
0.77 0.13 0.11
Matches are distributed among these distances:
17 19 0.14
18 105 0.75
19 16 0.11
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:66081250 original size:54 final size:53
Alignment explanation
Indices: 66081187--66081383 Score: 191
Period size: 54 Copynumber: 3.7 Consensus size: 53
66081177 AATTGATCGG
*
66081187 TTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGATATTCAGTAACAATTAA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCA-ATATTCAGTAACAATCAA
* * * **
66081240 GTTATTCAGTAGCAGTC-ATTCATTCAGTGACAATCAATTATTCAGTAATGATCAA
1 -TTATCCAGTAACAGTCAATT-ATTCAGTAACAATCAA-TATTCAGTAACAATCAA
* * * * * * *
66081295 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTAATATCCAGTAACAGTCAA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATC-AATATTCAGTAACAATCAA
* * *
66081349 TTATCCGGTAACAGTCAGTTATTCAGTAATAATCA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCA
66081384 GCTATTTTAT
Statistics
Matches: 116, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
53 4 0.03
54 89 0.77
55 23 0.20
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (53 bp):
TTATCCAGTAACAGTCAATTATTCAGTAACAATCAATATTCAGTAACAATCAA
Found at i:66081318 original size:72 final size:71
Alignment explanation
Indices: 66081188--66081389 Score: 219
Period size: 72 Copynumber: 2.8 Consensus size: 71
66081178 ATTGATCGGT
* * *
66081188 TATCCAGTAACAGTCAATTATTCAGTAAAATCAGA-TATTCAGTAACAATTAAGTTATTCAGTAG
1 TATCCAGTAACAGTCAATTATTCAGTAAAATCA-ATTATTCAGTAA-TATTCAGTTATTCAGTAA
*
66081252 CAGTC-AT
64 CAGTCTAA
* * * *
66081259 TCATTCAGTGACAATCAATTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTAA
1 T-ATCCAGTAACAGTCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATTCAGTAA
66081324 CAGTCTAA
64 CAGTCTAA
* * * * * *
66081332 TATCCAGTAACAGTCAATTATCCGGTAACAGTCAGTTATTCAGTAATAATCAGCTATT
1 TATCCAGTAACAGTCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATT
66081390 TTATACCTTT
Statistics
Matches: 108, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
71 1 0.01
72 91 0.84
73 16 0.15
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.34
Consensus pattern (71 bp):
TATCCAGTAACAGTCAATTATTCAGTAAAATCAATTATTCAGTAATATTCAGTTATTCAGTAACA
GTCTAA
Found at i:66081559 original size:47 final size:47
Alignment explanation
Indices: 66081506--66081609 Score: 172
Period size: 47 Copynumber: 2.2 Consensus size: 47
66081496 CAGTAACAGT
* * *
66081506 AACAGTAGCAGTACGGTACACAGAGTACCTCATCGGAACAAATCTGG
1 AACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
*
66081553 AACAGTAACAGTATGGTACACAGAGTACCTCATCGGAACAAATCCGA
1 AACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
66081600 AACAGTAACA
1 AACAGTAACA
66081610 TTAACAGTAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.40, C:0.23, G:0.20, T:0.16
Consensus pattern (47 bp):
AACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
Found at i:66081614 original size:6 final size:6
Alignment explanation
Indices: 66081600--66081633 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
66081590 ACAAATCCGA
*
66081600 AACAGT AACATT AACAGT AACAGT AACAGT AACA
1 AACAGT AACAGT AACAGT AACAGT AACAGT AACA
66081634 ATATCCGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.53, C:0.18, G:0.12, T:0.18
Consensus pattern (6 bp):
AACAGT
Found at i:66081615 original size:53 final size:52
Alignment explanation
Indices: 66081500--66081618 Score: 158
Period size: 47 Copynumber: 2.4 Consensus size: 52
66081490 CCGGAACAGT
* *
66081500 AACAGTAACAGTAGCAGTACGGTACACAGAGTACCTCATCGGAACAAATCTG
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCG
*
66081552 ----G-AACAGTAACAGTATGGTACACAGAGTACCTCATCGGAACAAATCCG
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCG
*
66081599 AAACAGTAACATTAACAGTA
1 -AACAGTAACAGTAACAGTA
66081619 ACAGTAACAG
Statistics
Matches: 57, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
47 43 0.75
48 1 0.02
52 1 0.02
53 12 0.21
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.18
Consensus pattern (52 bp):
AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCG
Found at i:66081676 original size:12 final size:12
Alignment explanation
Indices: 66081659--66081683 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
66081649 AGTGCCGAAT
66081659 CGGTAACAGTAA
1 CGGTAACAGTAA
66081671 CGGTAACAGTAA
1 CGGTAACAGTAA
66081683 C
1 C
66081684 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:66082295 original size:20 final size:18
Alignment explanation
Indices: 66082261--66082305 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
66082251 AAACTTTCAA
66082261 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
66082279 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
66082299 -TTTCCCT
1 TTTTCCCT
66082306 GCTTTTCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 10 0.40
20 7 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:66085039 original size:32 final size:32
Alignment explanation
Indices: 66085003--66085162 Score: 248
Period size: 32 Copynumber: 5.0 Consensus size: 32
66084993 TATAACTATG
66085003 CTACTTTTTTATATGTAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
66085035 CTACTTTTTCATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
66085067 CTACTTTTTTATATGTGAACCTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
66085099 ATACTTTTTTATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
66085131 CTACTTTTTTATAGGTAAACCTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
66085163 ATTTTTTATG
Statistics
Matches: 114, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 114 1.00
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (32 bp):
CTACTTTTTTATATGTAAAACTAATGTATGAT
Found at i:66085104 original size:64 final size:64
Alignment explanation
Indices: 66085003--66085164 Score: 279
Period size: 64 Copynumber: 2.5 Consensus size: 64
66084993 TATAACTATG
* *
66085003 CTACTTTTTTATATGTAAAACTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAACCTAATGTATGATATACTTTTTCATATGCAAAACTAATGTATGAT
* *
66085067 CTACTTTTTTATATGTGAACCTAATGTATGATATACTTTTTTATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAACCTAATGTATGATATACTTTTTCATATGCAAAACTAATGTATGAT
*
66085131 CTACTTTTTTATAGGTAAACCTAATGTATGATAT
1 CTACTTTTTTATATGTAAACCTAATGTATGATAT
66085165 TTTTTATGTT
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 92 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.44
Consensus pattern (64 bp):
CTACTTTTTTATATGTAAACCTAATGTATGATATACTTTTTCATATGCAAAACTAATGTATGAT
Found at i:66086783 original size:2 final size:2
Alignment explanation
Indices: 66086776--66086804 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
66086766 CTTATGTTAC
66086776 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
66086805 TTATTAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:66087237 original size:21 final size:21
Alignment explanation
Indices: 66087185--66087239 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
66087175 ACCGTTGTTT
* *
66087185 CTAATCTCACCGCTACAGTAT
1 CTAATCTCACTGCTACAGTAA
*
66087206 CCAATCTCACTGCTACAGTAA
1 CTAATCTCACTGCTACAGTAA
66087227 CTAATCTCACTGC
1 CTAATCTCACTGC
66087240 CACTTCTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.35, G:0.09, T:0.27
Consensus pattern (21 bp):
CTAATCTCACTGCTACAGTAA
Found at i:66088833 original size:20 final size:20
Alignment explanation
Indices: 66088808--66088849 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
66088798 TCATAAATTA
66088808 TTCAAAAAAAATTAAATTCT
1 TTCAAAAAAAATTAAATTCT
** *
66088828 TTCAAAATTAATTTAATTCT
1 TTCAAAAAAAATTAAATTCT
66088848 TT
1 TT
66088850 TTATATATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (20 bp):
TTCAAAAAAAATTAAATTCT
Found at i:66089112 original size:18 final size:18
Alignment explanation
Indices: 66089091--66089125 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
66089081 ATTTTATATT
*
66089091 TATTAAATAATTTAATTA
1 TATTAAATAATTAAATTA
*
66089109 TATTTAATAATTAAATT
1 TATTAAATAATTAAATT
66089126 TAATAATTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTAAATAATTAAATTA
Found at i:66089112 original size:22 final size:22
Alignment explanation
Indices: 66089084--66089143 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
66089074 AATTTAAATT
66089084 TTATATTTATTAAATAATTTAA
1 TTATATTTATTAAATAATTTAA
* *
66089106 TTATATTTAATAATTAAATTTAA
1 TTATATTTATTAAAT-AATTTAA
*
66089129 -TA-ATTTATCAAATAA
1 TTATATTTATTAAATAA
66089144 ATTTTATAGC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 2 0.06
21 8 0.25
22 15 0.47
23 7 0.22
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
TTATATTTATTAAATAATTTAA
Found at i:66089119 original size:13 final size:13
Alignment explanation
Indices: 66089103--66089133 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
66089093 TTAAATAATT
*
66089103 TAATTATATTTAA
1 TAATTAAATTTAA
66089116 TAATTAAATTTAA
1 TAATTAAATTTAA
66089129 TAATT
1 TAATT
66089134 TATCAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAATTAAATTTAA
Found at i:66094697 original size:31 final size:31
Alignment explanation
Indices: 66094656--66094720 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
66094646 AACCCTTAAC
*
66094656 AGTCAAGTGACTTGAATAAAAACTTTTGAAT
1 AGTCAAGTGACTTAAATAAAAACTTTTGAAT
* *
66094687 AGTCTAGTGACTTAAATGAAAACTTTTGAAT
1 AGTCAAGTGACTTAAATAAAAACTTTTGAAT
66094718 AGT
1 AGT
66094721 TCAATGATCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (31 bp):
AGTCAAGTGACTTAAATAAAAACTTTTGAAT
Found at i:66097203 original size:29 final size:29
Alignment explanation
Indices: 66097154--66097211 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
66097144 TGACCTCTAA
* *
66097154 TTCTTCTGTTGTCGTCCCCTTGCTATTGT
1 TTCTTCTGTTGTCGTCACCTTGCCATTGT
* *
66097183 TTCTTTTGTTGTTGTCACCTTGCCATTGT
1 TTCTTCTGTTGTCGTCACCTTGCCATTGT
66097212 GGTGTTGTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.05, C:0.24, G:0.17, T:0.53
Consensus pattern (29 bp):
TTCTTCTGTTGTCGTCACCTTGCCATTGT
Found at i:66099151 original size:26 final size:26
Alignment explanation
Indices: 66099114--66099167 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
66099104 AATAGTCAAG
66099114 TTTTCTAATTAATAAAATGAGACGGT
1 TTTTCTAATTAATAAAATGAGACGGT
* *
66099140 TTTTCTACTTAATAAAATGAGATGGT
1 TTTTCTAATTAATAAAATGAGACGGT
66099166 TT
1 TT
66099168 ATGTTTTAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (26 bp):
TTTTCTAATTAATAAAATGAGACGGT
Found at i:66103865 original size:53 final size:53
Alignment explanation
Indices: 66103790--66103896 Score: 144
Period size: 53 Copynumber: 2.0 Consensus size: 53
66103780 CATGGAAACT
* * **
66103790 TGTGATATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATTGGTGTGA
1 TGTGATATGTGACTTCCGTATAAGACCATAGTTGGGATATGGCATCAGTGTGA
* *
66103843 TGTGATTATGTG-CTTCCGTATAAGACTATATTTGGGATATGGCATCAGTGTGA
1 TGTGA-TATGTGACTTCCGTATAAGACCATAGTTGGGATATGGCATCAGTGTGA
66103896 T
1 T
66103897 ATGTGCTTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 41 0.87
54 6 0.13
ACGTcount: A:0.23, C:0.11, G:0.28, T:0.37
Consensus pattern (53 bp):
TGTGATATGTGACTTCCGTATAAGACCATAGTTGGGATATGGCATCAGTGTGA
Found at i:66103914 original size:47 final size:45
Alignment explanation
Indices: 66103843--66103962 Score: 152
Period size: 47 Copynumber: 2.6 Consensus size: 45
66103833 ATTGGTGTGA
* * * *
66103843 TGTGATTATGTGCTTCCGTATAAGACTATATTTGGGATATGGCATCAG
1 TGTGA-TATGTGCTTCTGTGTAAGACCATATCTGGGATA--GCATCAG
66103891 TGTGATATGTGCTTCTGTGTAAGACCATATCTGGGATAGCATCAG
1 TGTGATATGTGCTTCTGTGTAAGACCATATCTGGGATAGCATCAG
* *
66103936 TGTGGTATGTG-ATCTGTGTAAGACCAT
1 TGTGATATGTGCTTCTGTGTAAGACCAT
66103963 GGCTGGGCTA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
44 15 0.23
45 17 0.26
47 29 0.44
48 5 0.08
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (45 bp):
TGTGATATGTGCTTCTGTGTAAGACCATATCTGGGATAGCATCAG
Found at i:66106804 original size:130 final size:129
Alignment explanation
Indices: 66106624--66106995 Score: 417
Period size: 130 Copynumber: 2.9 Consensus size: 129
66106614 AAAATTCTTC
* * **
66106624 AAAACGAAGACGAAATTTGATGTTCGGCTATTCAAGGAATCGTGCCCTAACGTGTTGGGTTACAA
1 AAAACGAAGACGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTACAA
* * * *
66106689 TTTCGTATTTGCTCAAAATAATCGAATTTCCCTTCGAAATTTCATTCATATCTTTTAAAATCCCT
66 TTTCG-ATTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATATCTTTTAAAATCCCT
* * * * * *
66106754 TAAATGAAGATGAGATTTGATGTTTGGCCATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
1 AAAACGAAGACGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTACAA
* * ** * * *
66106819 TTTCGCATTTGTTCAAAATAATCGAATATCACTTTAAAATTTTGCTCGTGTCTTTTAAAATCTCT
66 TTTCG-ATTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATATCTTTTAAAATCCCT
* * * * *
66106884 AAAACGAAGGCGATATGTGATATTTGGCAATTCGCAGG-ATCATGCCCTAACGTGTTGGG-TAGC
1 AAAACGAAGACGAAATTTGATGTTTGGCAATTCGC-GGAATCGTGCCCTAACGTGTTGGGTTA-C
* *
66106947 AATTTCCCGA-TTGTTTAAAATAATCAAATATCCCTTCAAAATTTCACTC
64 AATTT--CGATTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTC
66106996 GGCTCTTCTA
Statistics
Matches: 201, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
129 1 0.00
130 195 0.97
131 3 0.01
132 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (129 bp):
AAAACGAAGACGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTACAA
TTTCGATTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATATCTTTTAAAATCCCT
Found at i:66110597 original size:21 final size:21
Alignment explanation
Indices: 66110567--66110618 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
66110557 TGCATTCATG
66110567 CATT-TGCATTTGCATCATAT
1 CATTATGCATTTGCATCATAT
66110587 CATTATGCATTTGCATCATAT
1 CATTATGCATTTGCATCATAT
*
66110608 CGTTATGCATT
1 CATTATGCATT
66110619 AAAGGCCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 4 0.13
21 26 0.87
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (21 bp):
CATTATGCATTTGCATCATAT
Found at i:66119093 original size:171 final size:171
Alignment explanation
Indices: 66118876--66119216 Score: 529
Period size: 171 Copynumber: 2.0 Consensus size: 171
66118866 TGGCGTCTCT
* * * *
66118876 GTATTGGCGGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCG
1 GTATTGGCGAAGAACAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCG
*
66118941 AAGATAGCAGATTTGACATCTCTGTATTAGCGGAGAACAGATCGAAGATAGCAGATTTGACATCT
66 AAGATAGCAGATTTGACATCTCTGTATTAGCAGAGAACAGATCGAAGATAGCAGATTTGACATCT
*
66119006 CTGTATTGGTGGAGAACAGATCGAAAATAGCAGATTTGGCA
131 CTGTATTGGCGGAGAACAGATCGAAAATAGCAGATTTGGCA
* * *
66119047 GTATTGGCGAAGAACAGATCGAAGATCATAGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCG
1 GTATTGGCGAAGAACAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCG
* * * * * *
66119112 AAGATAGCAGATTTGGCATTTCTGTATTGGCAGAGAGCAGATTGAAGATAGCAGATTTGGCATCT
66 AAGATAGCAGATTTGACATCTCTGTATTAGCAGAGAACAGATCGAAGATAGCAGATTTGACATCT
* *
66119177 CTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGC
131 CTGTATTGGCGGAGAACAGATCGAAAATAGCAGATTTGGC
66119217 GTCTCTGTAT
Statistics
Matches: 153, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
171 153 1.00
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (171 bp):
GTATTGGCGAAGAACAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCG
AAGATAGCAGATTTGACATCTCTGTATTAGCAGAGAACAGATCGAAGATAGCAGATTTGACATCT
CTGTATTGGCGGAGAACAGATCGAAAATAGCAGATTTGGCA
Found at i:66119247 original size:44 final size:44
Alignment explanation
Indices: 66118859--66119227 Score: 516
Period size: 44 Copynumber: 8.5 Consensus size: 44
66118849 GGTAAATCCT
* *
66118859 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
*
66118903 ACAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* * *
66118947 GCAGATTTGACATCTCTGTATTAGCGGAGAACAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* * * *
66118991 GCAGATTTGACATCTCTGTATTGGTGGAGAACAGATCGAAAATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* *
66119035 GCAGATTTGGCA-----GTATTGGCGAAGAACAGATCGAAGATCA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGAT-A
* * *
66119075 -TAGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* * *
66119118 GCAGATTTGGCATTTCTGTATTGGCAGAGAGCAGATTGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
66119162 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
*
66119206 GCAGATTTGGCGTCTCTGTATT
1 GCAGATTTGGCATCTCTGTATT
66119228 TACAAAGAGC
Statistics
Matches: 291, Mismatches: 27, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
39 33 0.11
40 1 0.00
43 1 0.00
44 256 0.88
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (44 bp):
GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
Found at i:66119542 original size:46 final size:45
Alignment explanation
Indices: 66119428--66119542 Score: 115
Period size: 46 Copynumber: 2.5 Consensus size: 45
66119418 CAAGATTTCG
* ** *
66119428 TCTCCCTTAAGTTGCAGTGGAGCAAAATCAAAGTCACAATCCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAAAATCAAACACACAATCCATA
* * * * *
66119473 TCTCTCTGAAGTTACAGTAGAGCAAGATAGAAACACACGAA-CCATA
1 TCTCCCTGAAGTTGCAGTGGAGCAAAAT-CAAACACAC-AATCCATA
*
66119519 TCTCCCTGAAGTTGCAATGGAGCA
1 TCTCCCTGAAGTTGCAGTGGAGCA
66119543 TTTTGAAGCT
Statistics
Matches: 55, Mismatches: 13, Indels: 3
0.77 0.18 0.04
Matches are distributed among these distances:
45 23 0.42
46 30 0.55
47 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.23
Consensus pattern (45 bp):
TCTCCCTGAAGTTGCAGTGGAGCAAAATCAAACACACAATCCATA
Found at i:66123351 original size:2 final size:2
Alignment explanation
Indices: 66123344--66123384 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
66123334 ATGTATCTAC
66123344 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
66123385 AACAACACTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:66125295 original size:6 final size:6
Alignment explanation
Indices: 66125284--66125312 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
66125274 ATTTGATGCT
66125284 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
66125313 TTACCTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:66125595 original size:2 final size:2
Alignment explanation
Indices: 66125590--66125628 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
66125580 GCCAAAACCA
66125590 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
66125629 ATTCCAAATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:66126145 original size:14 final size:14
Alignment explanation
Indices: 66126110--66126152 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
66126100 CCACATATTT
*
66126110 TTATGTTTAAAT-A
1 TTATGTTTGAATAA
66126123 TT-T-TTTGAATAA
1 TTATGTTTGAATAA
66126135 TTATGTTTGAATAA
1 TTATGTTTGAATAA
66126149 TTAT
1 TTAT
66126153 TTGATTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 6 0.23
12 4 0.15
13 3 0.12
14 13 0.50
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (14 bp):
TTATGTTTGAATAA
Found at i:66126295 original size:9 final size:9
Alignment explanation
Indices: 66126270--66126300 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
66126260 AAAGTGTGAA
66126270 AAATAAAAT
1 AAATAAAAT
66126279 AGAATAAAAT
1 A-AATAAAAT
66126289 AAATAAAAT
1 AAATAAAAT
66126298 AAA
1 AAA
66126301 GAACACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:66155850 original size:13 final size:14
Alignment explanation
Indices: 66155829--66155857 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
66155819 TGAAAAATAG
66155829 ATTAGAAAATATTT
1 ATTAGAAAATATTT
66155843 ATTA-AAAATATTT
1 ATTAGAAAATATTT
66155856 AT
1 AT
66155858 GAAGTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:66156137 original size:23 final size:23
Alignment explanation
Indices: 66156084--66156137 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
66156074 TATGGTTATT
66156084 ATTATT-TAACTAATATTAAATA
1 ATTATTATAACTAATATTAAATA
* * *
66156106 ATTAATATAATTAATATTATATGA
1 ATTATTATAACTAATATTAAAT-A
66156130 A-TATTATA
1 ATTATTATA
66156138 TTTGAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 5 0.19
23 19 0.73
24 2 0.08
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (23 bp):
ATTATTATAACTAATATTAAATA
Found at i:66156365 original size:23 final size:23
Alignment explanation
Indices: 66156339--66156405 Score: 62
Period size: 28 Copynumber: 2.7 Consensus size: 23
66156329 GATGGATTAT
66156339 ATTATTCTGGTGTGTTTGGGAGG
1 ATTATTCTGGTGTGTTTGGGAGG
*
66156362 ATTATATGATACTGGTGTGTTTTGGAGG
1 A-T-TAT--T-CTGGTGTGTTTGGGAGG
* *
66156390 ATTATACTAGTGTGTT
1 ATTATTCTGGTGTGTT
66156406 ATGAGATCGA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
23 10 0.28
24 1 0.03
25 3 0.08
26 3 0.08
27 2 0.06
28 17 0.47
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.45
Consensus pattern (23 bp):
ATTATTCTGGTGTGTTTGGGAGG
Found at i:66156365 original size:28 final size:28
Alignment explanation
Indices: 66156312--66156395 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
66156302 CACTTTGTGC
66156312 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
66156341 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
66156369 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
66156396 CTAGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:66156711 original size:13 final size:14
Alignment explanation
Indices: 66156693--66156721 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
66156683 GATTAACTTC
66156693 ATAAATATTTT-TA
1 ATAAATATTTTCTA
66156706 ATAAATATTTTCTA
1 ATAAATATTTTCTA
66156720 AT
1 AT
66156722 CCATTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (14 bp):
ATAAATATTTTCTA
Done.