Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 231 of 292
Found at i:67246981 original size:44 final size:45
Alignment explanation
Indices: 67246891--67247019 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
67246881 GACAGAACGA
*
67246891 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
67246937 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
67246981 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
67247020 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:67252524 original size:2 final size:2
Alignment explanation
Indices: 67252517--67252552 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
67252507 AAATGTAGCT
67252517 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
67252553 AGCATTCCCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:67255455 original size:20 final size:19
Alignment explanation
Indices: 67255412--67255455 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
67255402 AATGACTATT
*
67255412 TTTTAATATTTAAAATATA
1 TTTTAATATTTAAAATAAA
* *
67255431 GTTTATATATTTAAATTAAA
1 TTTTA-ATATTTAAAATAAA
67255451 TTTTA
1 TTTTA
67255456 CAAAAACTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TTTTAATATTTAAAATAAA
Found at i:67255784 original size:29 final size:29
Alignment explanation
Indices: 67255730--67255787 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
67255720 TTATAAGAAT
*
67255730 TGTATCAAATTAGTCTCTCTATTATTAAA
1 TGTATCAAATTAGTCTCTCTACTATTAAA
* *
67255759 TGTATCAATTTAGTCTTTAC-ACTATTAAA
1 TGTATCAAATTAGTCTCT-CTACTATTAAA
67255788 AAGAATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 24 0.96
30 1 0.04
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (29 bp):
TGTATCAAATTAGTCTCTCTACTATTAAA
Found at i:67256376 original size:19 final size:21
Alignment explanation
Indices: 67256334--67256380 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
67256324 AAATTAGAAA
67256334 AAAATAAATAAAAACTTTTAC
1 AAAATAAATAAAAACTTTTAC
67256355 AAAA-AAAT-AAAACTTCTT-C
1 AAAATAAATAAAAACTT-TTAC
67256374 AAAATAA
1 AAAATAA
67256381 GTGAAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 12 0.50
20 8 0.33
21 4 0.17
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATAAATAAAAACTTTTAC
Found at i:67257064 original size:50 final size:50
Alignment explanation
Indices: 67256999--67257094 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 50
67256989 TAATAAATTA
** * * *
67256999 AACTCTCAATTTTTATATATTATATCAATTTAATCATAATTTTAAAAAAT
1 AACTCTCAAAATTTATAAATAATATCAATTTAATCATAAATTTAAAAAAT
* * *
67257049 AACTCTCAAAATTTATAAATAATCTTAATTTAATCTTAAATTTAAA
1 AACTCTCAAAATTTATAAATAATATCAATTTAATCATAAATTTAAA
67257095 TATATATATA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 38 1.00
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (50 bp):
AACTCTCAAAATTTATAAATAATATCAATTTAATCATAAATTTAAAAAAT
Found at i:67257130 original size:21 final size:23
Alignment explanation
Indices: 67257104--67257147 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
67257094 ATATATATAT
*
67257104 ATATATATA-TAA-ATATTTAAA
1 ATATATATACTAATAAATTTAAA
67257125 ATATATATACTAATAAATTTAAA
1 ATATATATACTAATAAATTTAAA
67257148 TTTTATATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 3 0.15
23 8 0.40
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
ATATATATACTAATAAATTTAAA
Found at i:67257148 original size:31 final size:31
Alignment explanation
Indices: 67257088--67257152 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
67257078 TTAATCTTAA
*
67257088 ATTT-AAATATATATATATATATATATAAAT
1 ATTTAAAATATATATATATATAAATATAAAT
*
67257118 ATTTAAAATATATATACTA-ATAAATTTAAAT
1 ATTTAAAATATATATA-TATATAAATATAAAT
67257149 -TTTA
1 ATTTA
67257153 TATTAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 8 0.26
31 21 0.68
32 2 0.06
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (31 bp):
ATTTAAAATATATATATATATAAATATAAAT
Found at i:67257273 original size:26 final size:25
Alignment explanation
Indices: 67257242--67257299 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
67257232 CCACCACCGT
*
67257242 ACTTCAACAT-CCATCTTTCCATGCAA
1 ACTTCAACATGCCATC-GTCC-TGCAA
67257268 ACTTCAA-ATGCCATCGTCCTGCAA
1 ACTTCAACATGCCATCGTCCTGCAA
*
67257292 ATTTCAAC
1 ACTTCAAC
67257300 CTCCCATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 11 0.39
25 5 0.18
26 12 0.43
ACGTcount: A:0.31, C:0.33, G:0.07, T:0.29
Consensus pattern (25 bp):
ACTTCAACATGCCATCGTCCTGCAA
Found at i:67257723 original size:20 final size:20
Alignment explanation
Indices: 67257706--67257755 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
67257696 AATTTATTAT
67257706 TATATTTTTAAAAATATTTA
1 TATATTTTTAAAAATATTTA
*
67257726 TGTATTTTTAAAAATATTTA
1 TATATTTTTAAAAATATTTA
*
67257746 TGTATTTTTA
1 TATATTTTTA
67257756 TTTTTTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (20 bp):
TATATTTTTAAAAATATTTA
Found at i:67269517 original size:30 final size:30
Alignment explanation
Indices: 67269481--67269538 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
67269471 ATTTTATTGT
*
67269481 TAATTTTTTTATTATTTTAAAGACATTTAC
1 TAATTTTGTTATTATTTTAAAGACATTTAC
* *
67269511 TAATTTTGTTATTATTTTAGAGGCATTT
1 TAATTTTGTTATTATTTTAAAGACATTT
67269539 GCTTGTTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.05, G:0.09, T:0.57
Consensus pattern (30 bp):
TAATTTTGTTATTATTTTAAAGACATTTAC
Found at i:67281339 original size:11 final size:11
Alignment explanation
Indices: 67281321--67281345 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
67281311 TTTAATAAGA
67281321 TATTTTATTAT
1 TATTTTATTAT
67281332 TATTTTATTAT
1 TATTTTATTAT
67281343 TAT
1 TAT
67281346 ATAAGGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:67282958 original size:46 final size:46
Alignment explanation
Indices: 67282907--67283034 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
67282897 GCTCTCTGAA
**
67282907 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
67282953 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
67282999 ATGAAATGTGTAAGACAATGGTTGAAA-AGACCATGG
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGG
67283035 TTGAAAGATA
Statistics
Matches: 76, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
45 8 0.11
46 68 0.89
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.23
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:67283037 original size:61 final size:61
Alignment explanation
Indices: 67282959--67283086 Score: 229
Period size: 61 Copynumber: 2.1 Consensus size: 61
67282949 TGATATGAAA
*
67282959 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACAATGGT
1 TGAA-AAGACCATGGTTGAAAGATACCATGGAAACATGATATGAAATGTGTAAGACAATGGT
*
67283021 TGAAAAGACCATGGTTGAAAGATACCATGGAAACATGATATGAAATGTGTAAGACCATGGT
1 TGAAAAGACCATGGTTGAAAGATACCATGGAAACATGATATGAAATGTGTAAGACAATGGT
67283082 TGAAA
1 TGAAA
67283087 GGTACCATCG
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
61 60 0.94
62 4 0.06
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.23
Consensus pattern (61 bp):
TGAAAAGACCATGGTTGAAAGATACCATGGAAACATGATATGAAATGTGTAAGACAATGGT
Found at i:67283049 original size:16 final size:15
Alignment explanation
Indices: 67283010--67283050 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
67283000 TGAAATGTGT
*
67283010 AAGACAATGGTTGAA
1 AAGACCATGGTTGAA
67283025 AAGACCATGGTTGAA
1 AAGACCATGGTTGAA
*
67283040 AGATACCATGG
1 A-AGACCATGG
67283051 AAACATGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 15 0.65
16 8 0.35
ACGTcount: A:0.41, C:0.12, G:0.27, T:0.20
Consensus pattern (15 bp):
AAGACCATGGTTGAA
Found at i:67283077 original size:46 final size:46
Alignment explanation
Indices: 67283021--67283379 Score: 427
Period size: 46 Copynumber: 7.8 Consensus size: 46
67283011 AGACAATGGT
* *
67283021 TGAA-AAGACCATGGTTGAAAGATACCATGGAAACATGATATGAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
** * * *
67283066 TGTGTAAGACCATGGTTGAAAGGTACCATCGCAACATGATATGAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
** * *
67283112 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* * * * *
67283158 AGAATAAGACCATGGTTGAGAGATGCCATGGTAACATGACAAGAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* ***
67283204 TAAATAAGACCATGGTTGAAAGATACCATGGCAGTGTGACATGAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
67283250 TGAATAAGACCATGGTTGAAAGATACCATGGCAA-AGTGACATGAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACA-TGACATGAAA
* *
67283296 AGAATAAGACCATGGTTGAAAGATACCATGGCAACACGACA-GAAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAA
* * * * * *
67283342 TGAGTAAGACAATAGTTGAAAGACACTATGGCATCATG
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
67283380 TCAAAGATAA
Statistics
Matches: 271, Mismatches: 39, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
45 3 0.01
46 267 0.99
47 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (46 bp):
TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
Found at i:67283085 original size:21 final size:21
Alignment explanation
Indices: 67283061--67283132 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 21
67283051 AAACATGATA
67283061 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
* *
67283082 TGAAA-G-GTACCATCGCAACATGAT
1 TGAAATGTGTA--A--G-ACCATGGT
67283106 ATGAAATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
67283128 TGAAA
1 TGAAA
67283133 GATACCATGG
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
19 3 0.08
20 1 0.03
21 11 0.28
22 6 0.15
23 2 0.05
24 6 0.15
25 6 0.15
26 1 0.03
27 3 0.08
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:67283104 original size:107 final size:107
Alignment explanation
Indices: 67282918--67283142 Score: 378
Period size: 107 Copynumber: 2.1 Consensus size: 107
67282908 TGAAATGTGT
*
67282918 AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGAAACATGATATGAAATGAATAAGACCATGGTTGAAAGAT
*
67282983 ACCATGGCAACATGATATGAAATGTGTAAGACAATGGTTGAA
66 ACCATCGCAACATGATATGAAATGTGTAAGACAATGGTTGAA
** *
67283025 AAGACCATGGTTGAAAGATACCATGGAAACATGATATGAAATGTGTAAGACCATGGTTGAAAGGT
1 AAGACCATGGTTGAAAGATACCATGGAAACATGATATGAAATGAATAAGACCATGGTTGAAAGAT
*
67283090 ACCATCGCAACATGATATGAAATGTGTAAGACCATGGTTGAA
66 ACCATCGCAACATGATATGAAATGTGTAAGACAATGGTTGAA
*
67283132 AGATACCATGG
1 A-AGACCATGG
67283143 CAACGTGATA
Statistics
Matches: 110, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
107 102 0.93
108 8 0.07
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (107 bp):
AAGACCATGGTTGAAAGATACCATGGAAACATGATATGAAATGAATAAGACCATGGTTGAAAGAT
ACCATCGCAACATGATATGAAATGTGTAAGACAATGGTTGAA
Found at i:67289247 original size:19 final size:20
Alignment explanation
Indices: 67289206--67289257 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
67289196 CGCCTCTTTT
* *
67289206 TGCATT-CATTTCATTTATT
1 TGCATTACATTTCATTCATA
67289225 TGCATTACATTTCA-TCATA
1 TGCATTACATTTCATTCATA
*
67289244 TGCATTAAATTTCA
1 TGCATTACATTTCA
67289258 CGAAATGACC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 22 0.76
20 7 0.24
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.48
Consensus pattern (20 bp):
TGCATTACATTTCATTCATA
Found at i:67289726 original size:83 final size:82
Alignment explanation
Indices: 67289575--67289736 Score: 234
Period size: 83 Copynumber: 2.0 Consensus size: 82
67289565 ATGACAATGT
* * *
67289575 AGATCCTCCTACCCCCTGGTCTCACCCTGACAAATGCTCAAACGCAATACGAGATGCACATGCAA
1 AGATCCTCCTACCCCCTGGTCTCACCCTGAAAAATGCTCAAACGCAACACGAGATGCACACGCAA
67289640 AGGCCATCCGTTACTGA
66 AGGCCATCCGTTACTGA
* * * *
67289657 AGATTCTCTCTACCCCCTGGTTTCACCCTGAAAAATGCTCAAACGCAACCCGAGATGCACACGCG
1 AGATCCTC-CTACCCCCTGGTCTCACCCTGAAAAATGCTCAAACGCAACACGAGATGCACACGCA
* *
67289722 AAGGCCGTCTGTTAC
65 AAGGCCATCCGTTAC
67289737 AATCAGGCCC
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
82 7 0.10
83 63 0.90
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.20
Consensus pattern (82 bp):
AGATCCTCCTACCCCCTGGTCTCACCCTGAAAAATGCTCAAACGCAACACGAGATGCACACGCAA
AGGCCATCCGTTACTGA
Found at i:67292894 original size:39 final size:39
Alignment explanation
Indices: 67292841--67292926 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
67292831 AGCTAAATCA
*
67292841 GAGTAAT-GTCCAAAACACACTTATTACTCTAGGCCTAG
1 GAGTAATAATCCAAAACACACTTATTACTCTAGGCCTAG
67292879 GAGTAATAATCCAAAACACACTTATTACTCTAGGCCTAG
1 GAGTAATAATCCAAAACACACTTATTACTCTAGGCCTAG
67292918 GAGTAATAA
1 GAGTAATAA
67292927 GAATCTTTTG
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 7 0.15
39 39 0.85
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (39 bp):
GAGTAATAATCCAAAACACACTTATTACTCTAGGCCTAG
Found at i:67298838 original size:45 final size:44
Alignment explanation
Indices: 67298796--67299010 Score: 138
Period size: 45 Copynumber: 4.8 Consensus size: 44
67298786 ACTGAAGATT
*
67298796 GTAGATCTTATCTCCATGAGGTAGCAATGGAGTAGATCGAAGAC
1 GTAGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGAC
* * * * *
67298840 GACAAATCTTATCTTCC-TGAAGTAGCAAGGGAGCGGATTC-AAGCCAC
1 G-TAGATCTTATC-TCCATGAGGTAGCAATGGAGCAGA-TCGAAG--AC
* * * * * *
67298887 -TAG-CCTTGTCCCCCTGA-GTAGCAGTGGAGCAGA-CTGAAGATT
1 GTAGATCTTATCTCCATGAGGTAGCAATGGAGCAGATC-GAAGA-C
* *
67298929 GTAGAT-TTAATCTCTATGAGGTAGCAATGGAGCAGATCGAGGAC
1 GTAGATCTT-ATCTCCATGAGGTAGCAATGGAGCAGATCGAAGAC
* * * *
67298973 GACAAATCTTATCTCCCTGAGGTAGCAAGGGAGCAGAT
1 G-TAGATCTTATCTCCATGAGGTAGCAATGGAGCAGAT
67299011 TCAAGCCACT
Statistics
Matches: 127, Mismatches: 28, Indels: 31
0.68 0.15 0.17
Matches are distributed among these distances:
41 2 0.02
43 23 0.18
44 16 0.13
45 76 0.60
46 8 0.06
47 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (44 bp):
GTAGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGAC
Found at i:67298903 original size:133 final size:133
Alignment explanation
Indices: 67298665--67299076 Score: 583
Period size: 133 Copynumber: 3.1 Consensus size: 133
67298655 GTGAATTCAC
** * * * * * *
67298665 AGATCTTATCTCCATGATATAGCAATGGAGCAGATCTAAGATGGCGAATATTATCTCCCTAAAGT
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGACAAATCTTATCTCCCTGAAGT
* * * *
67298730 AGCAAGGGAGTGAATTCAAGCCACTAGCCTTGTCTCCCTGAGCAACAGTGGAGCAAACTGAAGAT
66 AGCAAGGGAGCGGATTCAAGCCACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGACTGAAGAT
67298795 TGT
131 TGT
* *
67298798 AGATCTTATCTCCATGAGGTAGCAATGGAGTAGATCGAAGACGACAAATCTTATCTTCCTGAAGT
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGACAAATCTTATCTCCCTGAAGT
* *
67298863 AGCAAGGGAGCGGATTCAAGCCACTAGCCTTGTCCCCCTGAGTAGCAGTGGAGCAGACTGAAGAT
66 AGCAAGGGAGCGGATTCAAGCCACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGACTGAAGAT
67298928 TGT
131 TGT
* * *
67298931 AGAT-TTAATCTCTATGAGGTAGCAATGGAGCAGATCGAGGACGACAAATCTTATCTCCCTGAGG
1 AGATCTT-ATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGACAAATCTTATCTCCCTGAAG
* * * * *
67298995 TAGCAAGGGAGCAGATTCAAGCCACTAGCCTTGTCTCCCTGAGCAGCAATAGAGCAGGCTGGAGA
65 TAGCAAGGGAGCGGATTCAAGCCACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGACTGAAGA
*
67299060 TTAT
130 TTGT
67299064 AGATCTTATCTCC
1 AGATCTTATCTCC
67299077 TTAAGCAGTA
Statistics
Matches: 247, Mismatches: 30, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
132 2 0.01
133 243 0.98
134 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (133 bp):
AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGACAAATCTTATCTCCCTGAAGT
AGCAAGGGAGCGGATTCAAGCCACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGACTGAAGAT
TGT
Found at i:67299340 original size:44 final size:44
Alignment explanation
Indices: 67299254--67299370 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 44
67299244 AGACGGCGGA
* * *
67299254 CCTTATCTTCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACAAGT
1 CCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTCAAGCCACAA-T
67299299 -CTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TCGAA-CGCACAAT
1 CCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTC-AAGC-CACAAT
** *
67299342 CCTTATCTCTTTGAAGTTGCAGTAGAGTA
1 CCTTATCTCCCTGAAGTTGCAGTGGAGTA
67299371 CGATAAAAGT
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
43 4 0.06
44 59 0.94
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (44 bp):
CCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTCAAGCCACAAT
Found at i:67302709 original size:50 final size:51
Alignment explanation
Indices: 67302629--67302751 Score: 160
Period size: 50 Copynumber: 2.4 Consensus size: 51
67302619 GACCATGGCA
* * *
67302629 ACAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGACCACACTTATCTGATCAAGGACAAA-TG
* *
67302680 -TAAGTGATAAGTGATAGCTTCGACCACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGACCACACTTATCTGATCAAGGACAAATG
* *
67302730 ACAAGTGAAAAGTGGTAGCTTC
1 ACAAGTGATAAGTGATAGCTTC
67302752 AGCTACCTGA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 41 0.66
51 21 0.34
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGACCACACTTATCTGATCAAGGACAAATG
Found at i:67302771 original size:31 final size:31
Alignment explanation
Indices: 67302733--67302912 Score: 272
Period size: 31 Copynumber: 5.8 Consensus size: 31
67302723 ACAAATGACA
* *
67302733 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* * *
67302764 AGTGAAAAATGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
67302795 AGTGAAAAGTGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
67302826 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
67302857 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
67302888 AGTGAATAA-TGGTAGCTTCGGCTAC
1 AGTGAA-AAGTGGTAGCTCCGGCTAC
67302913 AAGTGACAAG
Statistics
Matches: 139, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
31 137 0.99
32 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:67303011 original size:47 final size:46
Alignment explanation
Indices: 67302937--67303059 Score: 138
Period size: 47 Copynumber: 2.7 Consensus size: 46
67302927 AAGTGATTTC
* * *
67302937 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * * *
67302983 CTGTATAAGACCATATCTGGGGTCTGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * * *
67303030 CGTGTAAGACCATAGCTGGGCTATAGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
67303060 GATATATGAA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
46 25 0.39
47 39 0.61
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
Found at i:67303138 original size:42 final size:42
Alignment explanation
Indices: 67303032--67303145 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 42
67303022 ATGTGATTCG
* *
67303032 TGTAAGACCATAGCTGGGCTATAGCATCGATATATGAAGATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGATC
* *
67303074 TGTAATACCATAGCTGGGCTATGGCATC-ATTATGTGAAGATC
1 TGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGATC
* **
67303116 TGTAAGACCATAGTTGAACTATGGCATCGA
1 TGTAAGACCATAGCTGGGCTATGGCATCGA
67303146 GAAAACGAAG
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 60 0.97
43 1 0.02
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGATC
Found at i:67304452 original size:2 final size:2
Alignment explanation
Indices: 67304445--67304473 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
67304435 TATTATAATT
67304445 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67304474 TTGTTTACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67306399 original size:3 final size:3
Alignment explanation
Indices: 67306391--67306444 Score: 99
Period size: 3 Copynumber: 18.0 Consensus size: 3
67306381 ACATACCTTG
*
67306391 AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
67306439 AAT AAT
1 AAT AAT
67306445 TGAAGAAGGT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:67307424 original size:22 final size:24
Alignment explanation
Indices: 67307383--67307538 Score: 115
Period size: 26 Copynumber: 6.2 Consensus size: 24
67307373 AAAGAAAATG
67307383 AAATAAATAATATAAAACAATTTA
1 AAATAAATAATATAAAACAATTTA
*
67307407 AAATAAAT-A-ATAAGACAATTTTA
1 AAATAAATAATATAAAACAA-TTTA
*
67307430 AGTGAAT-AATATATAGAAAAACAAGTTTA
1 A---AATAAATA-ATA-TAAAACAA-TTTA
* *
67307459 AAATAGATACTATAAAAAGCAATTTA
1 AAATAAATAATAT-AAAA-CAATTTA
*
67307485 AAATAAATAGTATAAAACAATTTA
1 AAATAAATAATATAAAACAATTTA
* *
67307509 AAATCATTAATATACAAAACAA--TA
1 AAATAAATAATAT--AAAACAATTTA
67307533 AAATAA
1 AAATAA
67307539 TATATAGTGT
Statistics
Matches: 106, Mismatches: 13, Indels: 26
0.73 0.09 0.18
Matches are distributed among these distances:
22 8 0.08
23 6 0.06
24 32 0.30
25 7 0.07
26 34 0.32
27 7 0.07
28 1 0.01
29 11 0.10
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.28
Consensus pattern (24 bp):
AAATAAATAATATAAAACAATTTA
Found at i:67307463 original size:26 final size:24
Alignment explanation
Indices: 67307383--67307544 Score: 111
Period size: 24 Copynumber: 6.5 Consensus size: 24
67307373 AAAGAAAATG
*
67307383 AAATAA-ATAATATAAAACAATTTA
1 AAATAATAT-ATAAAAAACAATTTA
* *
67307407 AAATAA-ATA-ATAAGACAATTTTA
1 AAATAATATATAAAAAACAA-TTTA
67307430 AGTGAATAATATATAGAAAAACAAGTTTA
1 A---AATAATATATA-AAAAACAA-TTTA
*
67307459 AAATAGATACTATAAAAAGCAATTTA
1 AAATA-ATA-TATAAAAAACAATTTA
*
67307485 AAATAA-ATAGTATAAAACAATTTA
1 AAATAATATA-TAAAAAACAATTTA
* *
67307509 AAATCATTAATATACAAAACAA--TA
1 AAAT-AAT-ATATAAAAAACAATTTA
67307533 AAATAATATATA
1 AAATAATATATA
67307545 GTGTTTATAA
Statistics
Matches: 115, Mismatches: 10, Indels: 28
0.75 0.07 0.18
Matches are distributed among these distances:
22 13 0.11
23 10 0.09
24 31 0.27
25 2 0.02
26 27 0.23
27 16 0.14
28 5 0.04
29 11 0.10
ACGTcount: A:0.61, C:0.06, G:0.05, T:0.28
Consensus pattern (24 bp):
AAATAATATATAAAAAACAATTTA
Found at i:67307546 original size:51 final size:51
Alignment explanation
Indices: 67307434--67307546 Score: 119
Period size: 50 Copynumber: 2.3 Consensus size: 51
67307424 ATTTTAAGTG
* **
67307434 AATAATATATAG-AAAAACAAGTTTAAAATAGATACTATAAAAAGCAATTT
1 AATAATATATAGTAAAAACAAGTTTAAAATAGATAATATAAAAAGCAATAA
* *
67307484 AA-AATAAATAGTATAAAACAA-TTTAAAATCA-TTAATATACAAAA-CAATAA
1 AATAATATATAGTA-AAAACAAGTTTAAAAT-AGATAATATA-AAAAGCAATAA
67307534 AATAATATATAGT
1 AATAATATATAGT
67307547 GTTTATAATA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
49 8 0.15
50 23 0.44
51 21 0.40
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.28
Consensus pattern (51 bp):
AATAATATATAGTAAAAACAAGTTTAAAATAGATAATATAAAAAGCAATAA
Found at i:67307839 original size:26 final size:26
Alignment explanation
Indices: 67307553--67308051 Score: 148
Period size: 26 Copynumber: 19.2 Consensus size: 26
67307543 TAGTGTTTAT
* *
67307553 AATAACATAT-AAAAAGTTCAAAATA
1 AATAATATATAAAAAAGTTTAAAATA
* * *
67307578 AATAATATGTGAAAAATAAATCTAAAATA
1 AATAATATAT--AAAA-AAGTTTAAAATA
*
67307607 AATACTATATATATATATAATAGTTTAATATA
1 AATA--ATATATA-A-A-AA-AGTTTAAAATA
* *
67307639 AGTAATATAT--GAAA-TCTTAAAATA
1 AATAATATATAAAAAAGT-TTAAAATA
* *
67307663 AATAATA-AT-AAAAAGATTTACAGTA
1 AATAATATATAAAAAAG-TTTAAAATA
67307688 AATAATA-A-AAAAGAA-TTT-AAATCA
1 AATAATATATAAAA-AAGTTTAAAAT-A
** * * * *
67307712 GTTAACATATAAAACAGTAT-AACTA
1 AATAATATATAAAAAAGTTTAAAATA
* *
67307737 AATAAGATAT--AAAA-CTTAAAATAGA
1 AATAATATATAAAAAAGTTTAAAAT--A
*
67307762 TAATATATATATATATAATAGTTTAAAATA
1 -AATA-ATATATA-A-AAAAGTTTAAAATA
* *
67307792 AATAACATATAAAAAATATTTAAAATA
1 AATAATATATAAAAAA-GTTTAAAATA
* *
67307819 AATAATATGTAAAACAGTTTAAAATA
1 AATAATATATAAAAAAGTTTAAAATA
* ** * **
67307845 ACTAATGCAAAAAAAAAATTAAAATA
1 AATAATATATAAAAAAGTTTAAAATA
* *
67307871 AA-AATATA-AAATAA-CTTAAAATA
1 AATAATATATAAAAAAGTTTAAAATA
* * * *
67307894 ATGTACA-ATA-AAACAA-TTTGAAATG
1 A-ATA-ATATATAAAAAAGTTTAAAATA
* * *
67307919 AAT-A-CTCTAAAAAA-TTTTAAATA
1 AATAATATATAAAAAAGTTTAAAATA
* * *
67307942 AATAATACATAAAATAGTTTAAAAGA
1 AATAATATATAAAAAAGTTTAAAATA
* * * *
67307968 ACTAATATGTAAAAAAAATCTAAAATA
1 AATAATATAT-AAAAAAGTTTAAAATA
*
67307995 AATAATATATAAAACTA-TTTAAAAT-
1 AATAATATATAAAA-AAGTTTAAAATA
* * * *
67308020 AATATATATATATATATGTATAAAATA
1 AATA-ATATATAAAAAAGTTTAAAATA
67308047 AATAA
1 AATAA
67308052 GTAAAATATA
Statistics
Matches: 344, Mismatches: 87, Indels: 85
0.67 0.17 0.16
Matches are distributed among these distances:
22 3 0.01
23 35 0.10
24 32 0.09
25 68 0.20
26 89 0.26
27 53 0.15
28 9 0.03
29 18 0.05
30 8 0.02
31 10 0.03
32 19 0.06
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (26 bp):
AATAATATATAAAAAAGTTTAAAATA
Found at i:67318021 original size:11 final size:11
Alignment explanation
Indices: 67318007--67318067 Score: 77
Period size: 11 Copynumber: 5.4 Consensus size: 11
67317997 AGATAAATAT
67318007 TATTTTATTAA
1 TATTTTATTAA
67318018 TATTTTATTAA
1 TATTTTATTAA
*
67318029 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
67318042 TATTTTATTAT
1 TATTTTATTAA
*
67318053 TATTTTATTAT
1 TATTTTATTAA
67318064 TATT
1 TATT
67318068 ACTGGGCCTA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
11 32 0.71
12 6 0.13
13 7 0.16
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:67321033 original size:62 final size:62
Alignment explanation
Indices: 67320936--67321091 Score: 249
Period size: 62 Copynumber: 2.5 Consensus size: 62
67320926 AGGAATTGAC
*
67320936 TGTAAAAAGAATCTAGCCCGGACGGGTGATCCTATCCAGATATAGCCCTCCCGAAGAATACG
1 TGTAAAAAGAATCTAGCCCGGACGGGTGATCCTATCCAGATATAGCCCTCCCAAAGAATACG
*
67320998 TGTAAAAAGAATCTAGCCCGGACGGGTGATCCTATCCGGATATAGCCCTCCCAAAGAATACG
1 TGTAAAAAGAATCTAGCCCGGACGGGTGATCCTATCCAGATATAGCCCTCCCAAAGAATACG
* ** * *
67321060 TGTAAAATGGTTTTAGCCCGGACGGGTAATCC
1 TGTAAAAAGAATCTAGCCCGGACGGGTGATCC
67321092 GAATTAGGGT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 87 1.00
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (62 bp):
TGTAAAAAGAATCTAGCCCGGACGGGTGATCCTATCCAGATATAGCCCTCCCAAAGAATACG
Found at i:67321333 original size:46 final size:46
Alignment explanation
Indices: 67321280--67321468 Score: 272
Period size: 46 Copynumber: 4.1 Consensus size: 46
67321270 GCTTTTTGAA
** *
67321280 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
67321326 ATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
**
67321372 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
67321418 ATGAAATGAACAAGATCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
67321464 A-GAAA
1 ATGAAA
67321469 ATAAGTAAGA
Statistics
Matches: 131, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.03
46 127 0.97
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:67323274 original size:42 final size:42
Alignment explanation
Indices: 67323223--67323482 Score: 180
Period size: 48 Copynumber: 5.7 Consensus size: 42
67323213 CTTCATTTTC
* * * *
67323223 TCGATGCCATATTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCACA-AA
* *
67323266 T-GTTGCCATAGTCCAGCTATGGTCTTAAACATATTCACAAA
1 TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCACAAA
* *
67323307 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGTCCAGCTATGGTCTTACAC---AT---AT-TCACAAA
* * * *
67323356 TCGATACCATAGCCCAGTTATGGTCTTACACGGATCACATATCACATA
1 TCGATGCCATAGTCCAGCTATGGTCTTACAC--AT---AT-TCACAAA
** * *
67323404 TCGATGCCATAACCCAACTATGGTCTTACACTGATCACATATCACATA
1 TCGATGCCATAGTCCAGCTATGGTCTTACAC--AT---AT-TCACAAA
*
67323452 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGTCCAGCTATGGTCTTACAC
67323483 GAATCACATA
Statistics
Matches: 188, Mismatches: 21, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
41 3 0.02
42 58 0.31
43 1 0.01
45 2 0.01
48 89 0.47
49 35 0.19
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCACAAA
Found at i:67323414 original size:48 final size:48
Alignment explanation
Indices: 67323294--67323645 Score: 333
Period size: 48 Copynumber: 7.2 Consensus size: 48
67323284 ATGGTCTTAA
*
67323294 ACATATTCACAAATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATC
1 ACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AATC
* * *
67323344 ACATATCACATATCGATACCATAGCCCAGTTATGGTCTTACACGGATC
1 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATC
* *
67323392 ACATATCACATATCGATGCCATAACCCAACTATGGTCTTACACTG-ATC
1 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAATC
67323440 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATC
1 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATC
* * * * * *
67323488 ACATATCTCACTA---ATGCCATA-CCCCGATATGGTCTTATACAGTAGC
1 ACATATCACA-TATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAATC
* * * * ** *
67323534 ATATATCACA-CT-GATGTCATATCCCAAATATGGTCTTATGCA-GAAGC
1 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTA--CACGAATC
* * *
67323581 ACATAATCACATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATAAGGAAATC
1 ACAT-ATCACA--TAT-CGATGCCATAGCCCAGCTATGGTCTTA-CACG-AATC
67323635 ACATATCACAT
1 ACATATCACAT
67323646 GTTCCCATGG
Statistics
Matches: 253, Mismatches: 32, Indels: 33
0.80 0.10 0.10
Matches are distributed among these distances:
45 16 0.06
46 26 0.10
47 22 0.09
48 104 0.41
49 40 0.16
50 5 0.02
51 3 0.01
52 1 0.00
53 29 0.11
54 7 0.03
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.27
Consensus pattern (48 bp):
ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATC
Found at i:67323602 original size:145 final size:143
Alignment explanation
Indices: 67323294--67323645 Score: 381
Period size: 145 Copynumber: 2.4 Consensus size: 143
67323284 ATGGTCTTAA
*
67323294 ACATATTCACAAATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATCG
1 ACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA-C-
* * *
67323359 ATACCATAGCCCAGTTATGGTCTTACACGGATCACATATCACATATCGATGCCATAACCCAACTA
63 ATACCATAGCCCAGATATGGTCTTACACGGAGCACATATCACATATCGATGCCATAACCCAAATA
* *
67323424 TGGTCTTACACTGATC
128 TGGTCTTACACAGAGC
*
67323440 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACATATCTCACTA-AT
1 ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACA-TACAT
* * * * * * * *
67323503 GCCATA-CCCCGATATGGTCTTATACAGTAGCATATATCACA-CT-GATGTCATATCCCAAATAT
65 ACCATAGCCCAGATATGGTCTTACAC-GGAGCACATATCACATATCGATGCCATAACCCAAATAT
**
67323565 GGTCTTATGCAGAAGC
129 GGTCTTACACAG-AGC
* * * *
67323581 ACATAATCACATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATAAGGAAATCACATATCACAT
1 ACAT-ATCACA--TAT-CGATGCCATAGCCCAGCTATGGTCTTA-CACGTAATCACATATCACAT
67323646 GTTCCCATGG
Statistics
Matches: 176, Mismatches: 21, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
140 25 0.14
141 23 0.13
142 25 0.14
144 15 0.09
145 67 0.38
146 8 0.05
147 13 0.07
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.27
Consensus pattern (143 bp):
ACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATACATA
CCATAGCCCAGATATGGTCTTACACGGAGCACATATCACATATCGATGCCATAACCCAAATATGG
TCTTACACAGAGC
Found at i:67327264 original size:14 final size:14
Alignment explanation
Indices: 67327247--67327273 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
67327237 AATCTCAAAT
67327247 CTTAAACTCAAAAC
1 CTTAAACTCAAAAC
67327261 CTTAAACTCAAAA
1 CTTAAACTCAAAA
67327274 TCCAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.22
Consensus pattern (14 bp):
CTTAAACTCAAAAC
Found at i:67327603 original size:27 final size:26
Alignment explanation
Indices: 67327552--67327603 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
67327542 AAAATTGGTT
*
67327552 GAAAAAATAAAAAATATTAACTTATG
1 GAAAAAATAAAAAATATTAAATTATG
*
67327578 GAAAAAA-ACAAAATGATTAAAATTAT
1 GAAAAAATAAAAAAT-ATT-AAATTAT
67327604 TTTTAAGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 6 0.27
26 10 0.45
27 6 0.27
ACGTcount: A:0.63, C:0.04, G:0.08, T:0.25
Consensus pattern (26 bp):
GAAAAAATAAAAAATATTAAATTATG
Found at i:67328646 original size:28 final size:28
Alignment explanation
Indices: 67328614--67328677 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
67328604 ATGTTTATGT
* *
67328614 GAATTTTTAAATATTGTTAACACCGTTA
1 GAATTTTTAAAAATTATTAACACCGTTA
* *
67328642 GAATTTTTAAAAATTATTAATATCGTTA
1 GAATTTTTAAAAATTATTAACACCGTTA
*
67328670 AAATTTTT
1 GAATTTTT
67328678 TATCAAATCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (28 bp):
GAATTTTTAAAAATTATTAACACCGTTA
Found at i:67329798 original size:12 final size:12
Alignment explanation
Indices: 67329767--67329817 Score: 61
Period size: 12 Copynumber: 4.3 Consensus size: 12
67329757 CAAAAACAAT
67329767 ATAA-AAATGAA
1 ATAATAAATGAA
*
67329778 ATAAATAAATAAA
1 AT-AATAAATGAA
*
67329791 ATAATAAA-GGA
1 ATAATAAATGAA
67329802 ATAATAAATGAA
1 ATAATAAATGAA
67329814 ATAA
1 ATAA
67329818 CAAAGAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
11 11 0.33
12 14 0.42
13 8 0.24
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.22
Consensus pattern (12 bp):
ATAATAAATGAA
Found at i:67329914 original size:3 final size:3
Alignment explanation
Indices: 67329906--67330052 Score: 109
Period size: 3 Copynumber: 49.3 Consensus size: 3
67329896 ATGACTTACA
* * ** * * *
67329906 AAT AAT AAT TAT AAT AAA AAT AAT AGC AAT AAT AAT GAT GAT ACT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * **
67329953 AAT GAT AAT AAT AAT AGT AAT AAT AAT AAT ACT AAC GAT AAT AAT AGC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
67330001 AAT AAT AAT AAT AAT AGA- AAT CAT AAT AGT AAT AAT AAC ACT AAT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
67330046 AAT AAT A
1 AAT AAT A
67330053 GGAATAACAA
Statistics
Matches: 107, Mismatches: 34, Indels: 6
0.73 0.23 0.04
Matches are distributed among these distances:
2 2 0.02
3 104 0.97
4 1 0.01
ACGTcount: A:0.59, C:0.05, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:67332459 original size:21 final size:21
Alignment explanation
Indices: 67332421--67332460 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
67332411 ATTTTTAAAT
*
67332421 TTTAAAAAATTATAAAAATTA
1 TTTAAAAAAGTATAAAAATTA
* *
67332442 TTTAAAAAGGTATGAAAAT
1 TTTAAAAAAGTATAAAAAT
67332461 AAAAAAAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (21 bp):
TTTAAAAAAGTATAAAAATTA
Found at i:67333174 original size:13 final size:14
Alignment explanation
Indices: 67333158--67333187 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
67333148 AGAAAATAAC
67333158 TTTC-GAAAAATGA
1 TTTCTGAAAAATGA
67333171 TTTCTGAAAAATGA
1 TTTCTGAAAAATGA
67333185 TTT
1 TTT
67333188 ACTTTTCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (14 bp):
TTTCTGAAAAATGA
Found at i:67333817 original size:22 final size:21
Alignment explanation
Indices: 67333770--67333824 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
67333760 AATAAAATTG
*
67333770 AAATATTAAA-TA-ATTTATT
1 AAATAATAAATTATATTTATT
67333789 AAATAATAAATTATATTTATT
1 AAATAATAAATTATATTTATT
* *
67333810 ATACTAATAATTTAT
1 A-AATAATAAATTAT
67333825 TAAATGACTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.30
20 2 0.07
21 8 0.27
22 11 0.37
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
AAATAATAAATTATATTTATT
Found at i:67333841 original size:22 final size:21
Alignment explanation
Indices: 67333779--67333852 Score: 61
Period size: 22 Copynumber: 3.7 Consensus size: 21
67333769 GAAATATTAA
*
67333779 ATAATTTATTAAATAATAAAT
1 ATAATTTATTAAATACTAAAT
67333800 -TATATTTATT--ATACT--A-
1 ATA-ATTTATTAAATACTAAAT
67333816 ATAATTTATTAAATGACTAAAT
1 ATAATTTATTAAAT-ACTAAAT
* *
67333838 ATAAATAATTAAATA
1 ATAATTTATTAAATA
67333853 TGTATGTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 16
0.69 0.05 0.26
Matches are distributed among these distances:
16 7 0.17
17 3 0.07
18 2 0.05
19 7 0.17
20 2 0.05
21 9 0.21
22 12 0.29
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (21 bp):
ATAATTTATTAAATACTAAAT
Found at i:67335367 original size:35 final size:34
Alignment explanation
Indices: 67335296--67335363 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
67335286 TTTTAAGGTT
67335296 TTTAGGGTTAGGATTTTGTTAAAAATAAGTTAGG
1 TTTAGGGTTAGGATTTTGTTAAAAATAAGTTAGG
* *
67335330 TTTAGGGTTTAGGTTTTTGTT-AAAATAGGTTAGG
1 TTTAGGG-TTAGGATTTTGTTAAAAATAAGTTAGG
67335364 GTTTCAAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 19 0.61
35 12 0.39
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (34 bp):
TTTAGGGTTAGGATTTTGTTAAAAATAAGTTAGG
Found at i:67335557 original size:22 final size:22
Alignment explanation
Indices: 67335506--67335558 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
67335496 ATTAGGATTC
* * *
67335506 TAGGATTTTAAATAAATTAAGT
1 TAGGGTTTAAAATAAATTAAAT
**
67335528 TAATGTTTAAAATAAATTAAAT
1 TAGGGTTTAAAATAAATTAAAT
67335550 TAGGGTTTA
1 TAGGGTTTA
67335559 TTAAATTAGG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (22 bp):
TAGGGTTTAAAATAAATTAAAT
Found at i:67335563 original size:15 final size:15
Alignment explanation
Indices: 67335543--67335575 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
67335533 TTTAAAATAA
*
67335543 ATTAAATTAGGGTTT
1 ATTAAATTAGGATTT
67335558 ATTAAATTAGGATTT
1 ATTAAATTAGGATTT
67335573 ATT
1 ATT
67335576 TTTTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.48
Consensus pattern (15 bp):
ATTAAATTAGGATTT
Found at i:67335582 original size:67 final size:67
Alignment explanation
Indices: 67335511--67335733 Score: 249
Period size: 67 Copynumber: 3.3 Consensus size: 67
67335501 GATTCTAGGA
67335511 TTTTAAATAAATTAAGTTAATGTTTAAAATAAATTAAATTAGGGTTTATTAAATTAGGATTTATT
1 TTTTAAATAAATTAAGTTAATGTTTAAAATAAATTAAATTAGGGTTTATTAAATTAGGATTTATT
67335576 TT
66 TT
* ** * ** * *
67335578 TTTTAAATAGATTAAGTTAATTAGGGTTTTAAGGT--TTTAAA-TA-AATTAAGTAAATTAGGAT
1 TTTTAAATAAATTAAGTTAA-T---G-TTTAAAATAAATTAAATTAGGGTTTATTAAATTAGGAT
***
67335639 TCTA-GGA
61 T-TATTTT
67335646 TTTTAAATAAATTAAGTTAATGTTTAAAATAAATTAAATTAGGGTTTATTAAATTAGGATTTATT
1 TTTTAAATAAATTAAGTTAATGTTTAAAATAAATTAAATTAGGGTTTATTAAATTAGGATTTATT
67335711 TT
66 TT
*
67335713 TTTTAAATAGATTAAGTTAAT
1 TTTTAAATAAATTAAGTTAAT
67335734 TAGGGTTTTA
Statistics
Matches: 122, Mismatches: 23, Indels: 22
0.73 0.14 0.13
Matches are distributed among these distances:
63 6 0.05
64 1 0.01
65 5 0.04
66 4 0.03
67 55 0.45
68 35 0.29
69 4 0.03
70 5 0.04
71 1 0.01
72 6 0.05
ACGTcount: A:0.41, C:0.00, G:0.13, T:0.46
Consensus pattern (67 bp):
TTTTAAATAAATTAAGTTAATGTTTAAAATAAATTAAATTAGGGTTTATTAAATTAGGATTTATT
TT
Found at i:67335601 original size:34 final size:34
Alignment explanation
Indices: 67335562--67335765 Score: 104
Period size: 34 Copynumber: 6.0 Consensus size: 34
67335552 GGGTTTATTA
* *
67335562 AATTAGGATTTATTTTTTTTAAATAGATTAAGTT
1 AATTAGGATTTATATATTTTAAATAGATTAAGTT
* * *
67335596 AATTAGGGTTT-TA-AGGTTTTAAATAAATTAAGTA
1 AATTAGGATTTATATA--TTTTAAATAGATTAAGTT
** *
67335630 AATTAGGATTCTA-GGATTTTAAATAAATTAAGTT
1 AATTAGGATT-TATATATTTTAAATAGATTAAGTT
* ** * *
67335664 AA-T--G-TTTAAAATAAATTAAATTAGGGTTTA-TT
1 AATTAGGATTT-ATATATTTTAAA-TA-GATTAAGTT
* *
67335696 AAATTAGGATTTATTTTTTTTAAATAGATTAAGTT
1 -AATTAGGATTTATATATTTTAAATAGATTAAGTT
* *
67335731 AATTAGGGTTT-TA-AGGTTTTAAATAAATTAAGTT
1 AATTAGGATTTATATA--TTTTAAATAGATTAAGTT
67335765 A
1 A
67335766 GAGTTTAAAA
Statistics
Matches: 127, Mismatches: 26, Indels: 34
0.68 0.14 0.18
Matches are distributed among these distances:
29 1 0.01
30 3 0.02
31 7 0.06
32 4 0.03
33 8 0.06
34 87 0.69
35 5 0.04
36 9 0.07
37 3 0.02
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (34 bp):
AATTAGGATTTATATATTTTAAATAGATTAAGTT
Found at i:67335631 original size:135 final size:135
Alignment explanation
Indices: 67335464--67335763 Score: 575
Period size: 135 Copynumber: 2.2 Consensus size: 135
67335454 AATTTAGGAC
* *
67335464 TTAGGG-TTTATGGTTTTAAACAAATTAAGTAAATTAGGATTCTAGGATTTTAAATAAATTAAGT
1 TTAGGGTTTTAAGGTTTTAAATAAATTAAGTAAATTAGGATTCTAGGATTTTAAATAAATTAAGT
67335528 TAATGTTTAAAATAAATTAAATTAGGGTTTATTAAATTAGGATTTATTTTTTTTAAATAGATTAA
66 TAATGTTTAAAATAAATTAAATTAGGGTTTATTAAATTAGGATTTATTTTTTTTAAATAGATTAA
67335593 GTTAA
131 GTTAA
67335598 TTAGGGTTTTAAGGTTTTAAATAAATTAAGTAAATTAGGATTCTAGGATTTTAAATAAATTAAGT
1 TTAGGGTTTTAAGGTTTTAAATAAATTAAGTAAATTAGGATTCTAGGATTTTAAATAAATTAAGT
67335663 TAATGTTTAAAATAAATTAAATTAGGGTTTATTAAATTAGGATTTATTTTTTTTAAATAGATTAA
66 TAATGTTTAAAATAAATTAAATTAGGGTTTATTAAATTAGGATTTATTTTTTTTAAATAGATTAA
67335728 GTTAA
131 GTTAA
67335733 TTAGGGTTTTAAGGTTTTAAATAAATTAAGT
1 TTAGGGTTTTAAGGTTTTAAATAAATTAAGT
67335764 TAGAGTTTAA
Statistics
Matches: 163, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
134 6 0.04
135 157 0.96
ACGTcount: A:0.40, C:0.01, G:0.15, T:0.44
Consensus pattern (135 bp):
TTAGGGTTTTAAGGTTTTAAATAAATTAAGTAAATTAGGATTCTAGGATTTTAAATAAATTAAGT
TAATGTTTAAAATAAATTAAATTAGGGTTTATTAAATTAGGATTTATTTTTTTTAAATAGATTAA
GTTAA
Found at i:67335692 original size:22 final size:22
Alignment explanation
Indices: 67335641--67335693 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
67335631 ATTAGGATTC
* * *
67335641 TAGGATTTTAAATAAATTAAGT
1 TAGGGTTTAAAATAAATTAAAT
**
67335663 TAATGTTTAAAATAAATTAAAT
1 TAGGGTTTAAAATAAATTAAAT
67335685 TAGGGTTTA
1 TAGGGTTTA
67335694 TTAAATTAGG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (22 bp):
TAGGGTTTAAAATAAATTAAAT
Found at i:67335698 original size:15 final size:15
Alignment explanation
Indices: 67335678--67335710 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
67335668 TTTAAAATAA
*
67335678 ATTAAATTAGGGTTT
1 ATTAAATTAGGATTT
67335693 ATTAAATTAGGATTT
1 ATTAAATTAGGATTT
67335708 ATT
1 ATT
67335711 TTTTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.48
Consensus pattern (15 bp):
ATTAAATTAGGATTT
Found at i:67335776 original size:22 final size:22
Alignment explanation
Indices: 67335746--67335793 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
67335736 GGGTTTTAAG
* *
67335746 GTTTTAAATAAATTAAGTTAGA
1 GTTTAAAATAAATTAAATTAGA
* *
67335768 GTTTAAAATAGATTAAATTAGC
1 GTTTAAAATAAATTAAATTAGA
67335790 GTTT
1 GTTT
67335794 TGGGTTTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.02, G:0.15, T:0.42
Consensus pattern (22 bp):
GTTTAAAATAAATTAAATTAGA
Found at i:67335840 original size:57 final size:57
Alignment explanation
Indices: 67335770--67335958 Score: 183
Period size: 57 Copynumber: 3.4 Consensus size: 57
67335760 AAGTTAGAGT
* *
67335770 TTAAAA-TAGATTAAATTAGCGTTTTGGGTTTATTAAATTAGGGTTTATATTTTTTGG
1 TTAAAATTA-ATTAAATTAGGGTTTTGGGTTTATTAAATTAGGGATTATATTTTTTGG
* * * * ** *
67335827 TTAAAATTAATTAAATTAGGGTTTTAGGATT-TTAAA-TA--AATTA-AGTTAGTGT
1 TTAAAATTAATTAAATTAGGGTTTTGGGTTTATTAAATTAGGGATTATATTTTTTGG
* * * * * * *
67335879 TTTAAATAAATTAAATTAGGGTTTTGGGTTTATCAAATTAGGGCTTATGTGTTTTAG
1 TTAAAATTAATTAAATTAGGGTTTTGGGTTTATTAAATTAGGGATTATATTTTTTGG
67335936 TTAAAATTAATTAAATTAGGGTT
1 TTAAAATTAATTAAATTAGGGTT
67335959 ATAAGGTTTT
Statistics
Matches: 101, Mismatches: 25, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
52 32 0.32
53 7 0.07
54 2 0.02
55 2 0.02
56 8 0.08
57 48 0.48
58 2 0.02
ACGTcount: A:0.34, C:0.02, G:0.18, T:0.46
Consensus pattern (57 bp):
TTAAAATTAATTAAATTAGGGTTTTGGGTTTATTAAATTAGGGATTATATTTTTTGG
Found at i:67335862 original size:109 final size:105
Alignment explanation
Indices: 67335620--67336195 Score: 458
Period size: 109 Copynumber: 5.5 Consensus size: 105
67335610 GGTTTTAAAT
* * *
67335620 AAATTAAGTAAATTAGGATTCTAGGATTTTAAATAAATTAAGTTA-ATGTTTAAAATAAATTAAA
1 AAATTAATTAAATTAGGGTTTTAGG-TTTTAAATAAATTAAGTTAGA-GTTTAAAATAAATTAAA
* *
67335684 TTA------GGGTTTATTAAATTAGGATTTATTTTTTT-TAA
64 TTAGGTTTTGGGTTTATTAAATTAGGGTTTATTTTTTTGTTA
*
67335719 ATAGATTAAGTT-AATTAGGGTTTTAAGGTTTTAAATAAATTAAGTTAGAGTTTAAAATAGATTA
1 A-A-ATTAA-TTAAATTAGGGTTTT-AGGTTTTAAATAAATTAAGTTAGAGTTTAAAATAAATTA
67335783 AATTAGCGTTTTGGGTTTATTAAATTAGGGTTTATATTTTTTGGTTA
62 AATTAG-GTTTTGGGTTTATTAAATTAGGGTTTAT-TTTTTT-GTTA
* *
67335830 AAATTAATTAAATTAGGGTTTTAGGATTTTAAATAAATTAAGTTAGTGTTTTAAATAAATTAAAT
1 AAATTAATTAAATTAGGGTTTTAGG-TTTTAAATAAATTAAGTTAGAGTTTAAAATAAATTAAAT
* * *
67335895 TAGGGTTTTGGGTTTATCAAATTAGGGCTTATGTGTTTTAGTTA
65 TA-GGTTTTGGGTTTATTAAATTAGGGTTTAT-T-TTTTTGTTA
* *
67335939 AAATTAATTAAATTAGGGTTATAAGGTTTTAAATAAATTAAGTTAG-GGTT----TAAATT--A-
1 AAATTAATTAAATTAGGGTT-TTAGGTTTTAAATAAATTAAGTTAGAGTTTAAAATAAATTAAAT
* * * ** * *
67335996 -GGGGTTTGGATTTACCAAATTAGGGCTTT-TATTTTT-TAA
65 TAGGTTTTGGGTTTATTAAATTAGGG-TTTATTTTTTTGTTA
* * * * * *
67336035 ACAGATTAAGTAAATTAGGGCTCTAGGGCTTTAAATAAATTAAGTTAGGGTTTAAAGTAAATTAA
1 A-A-ATTAATTAAATTAGGGTTTTA-GGTTTTAAATAAATTAAGTTAGAGTTTAAAATAAATTAA
* ** * * **
67336100 ATTAAGGTTCTGGG-TTAGCAAATTAGGGCTTATGTTTTT-AAA
63 ATT-AGGTTTTGGGTTTATTAAATTAGGGTTTATTTTTTTGTTA
* * * * *
67336142 ATAGATTGAGTAAATTAGGGTTTTAGGGTTTTAAATAAACTAAATTAGGGTTTA
1 A-A-ATTAATTAAATTAGGGTTTTA-GGTTTTAAATAAATTAAGTTAGAGTTTA
67336196 GTTTTTTTAA
Statistics
Matches: 398, Mismatches: 44, Indels: 62
0.79 0.09 0.12
Matches are distributed among these distances:
96 3 0.01
97 6 0.02
98 37 0.09
99 26 0.07
100 3 0.01
101 53 0.13
102 6 0.02
103 6 0.02
104 6 0.02
105 1 0.00
106 2 0.01
107 68 0.17
108 36 0.09
109 132 0.33
110 10 0.03
111 3 0.01
ACGTcount: A:0.37, C:0.03, G:0.18, T:0.42
Consensus pattern (105 bp):
AAATTAATTAAATTAGGGTTTTAGGTTTTAAATAAATTAAGTTAGAGTTTAAAATAAATTAAATT
AGGTTTTGGGTTTATTAAATTAGGGTTTATTTTTTTGTTA
Found at i:67335881 original size:22 final size:22
Alignment explanation
Indices: 67335850--67335903 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
67335840 AATTAGGGTT
* *
67335850 TTAGGATTTTAAATAAATTAAG
1 TTAGGGTTTTAAATAAATTAAA
*
67335872 TTAGTGTTTTAAATAAATTAAA
1 TTAGGGTTTTAAATAAATTAAA
67335894 TTAGGGTTTT
1 TTAGGGTTTT
67335904 GGGTTTATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.46
Consensus pattern (22 bp):
TTAGGGTTTTAAATAAATTAAA
Found at i:67336082 original size:98 final size:98
Alignment explanation
Indices: 67335889--67336090 Score: 266
Period size: 98 Copynumber: 2.1 Consensus size: 98
67335879 TTTAAATAAA
* * * * *
67335889 TTAAATTAGGGTTTTGGGTTTATCAAATTAGGGCTTATGTGTTTTAGTTAAAATTAATTAAATTA
1 TTAAATTAGGGGTTTGGATTTACCAAATTAGGGCTTATGTATTTTA-TTAAAATTAAGTAAATTA
* *
67335954 GGGTTATAAGGTTTTAAATAAATTAAGTTAGGGT
65 GGGCTATAAGGCTTTAAATAAATTAAGTTAGGGT
67335988 TTAAATTAGGGGTTTGGATTTACCAAATTAGGGCTT-T-TATTTT-TTAAACAGATTAAGTAAAT
1 TTAAATTAGGGGTTTGGATTTACCAAATTAGGGCTTATGTATTTTATT-AA-A-ATTAAGTAAAT
* *
67336050 TAGGGCTCTAGGGCTTTAAATAAATTAAGTTAGGGT
63 TAGGGCTATAAGGCTTTAAATAAATTAAGTTAGGGT
67336086 TTAAA
1 TTAAA
67336091 GTAAATTAAA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
95 2 0.02
96 2 0.02
97 6 0.07
98 48 0.53
99 33 0.36
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (98 bp):
TTAAATTAGGGGTTTGGATTTACCAAATTAGGGCTTATGTATTTTATTAAAATTAAGTAAATTAG
GGCTATAAGGCTTTAAATAAATTAAGTTAGGGT
Found at i:67336095 original size:22 final size:21
Alignment explanation
Indices: 67336058--67336108 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
67336048 ATTAGGGCTC
*
67336058 TAGGGCTTTAAATAAATTAAGT
1 TAGGG-TTTAAATAAATTAAAT
67336080 TAGGGTTTAAAGTAAATTAAAT
1 TAGGGTTTAAA-TAAATTAAAT
*
67336102 TAAGGTT
1 TAGGGTT
67336109 CTGGGTTAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.41, C:0.02, G:0.20, T:0.37
Consensus pattern (21 bp):
TAGGGTTTAAATAAATTAAAT
Found at i:67336204 original size:30 final size:28
Alignment explanation
Indices: 67336152--67336237 Score: 72
Period size: 30 Copynumber: 3.0 Consensus size: 28
67336142 ATAGATTGAG
**
67336152 TAAATTAGGGTTTTAG-GGTTTTAAATAAA
1 TAAATTAGGG-TTTAGTTTTTTTAAA-AAA
67336181 CTAAATTAGGGTTTAGTTTTTTTAAAAAA
1 -TAAATTAGGGTTTAGTTTTTTTAAAAAA
*
67336210 TAACATT-GTGTTTA--TTTTTTAACAAAA
1 TAA-ATTAGGGTTTAGTTTTTTTAA-AAAA
67336237 T
1 T
67336238 TGACTATTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
26 8 0.16
27 5 0.10
28 9 0.18
29 11 0.22
30 17 0.34
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.45
Consensus pattern (28 bp):
TAAATTAGGGTTTAGTTTTTTTAAAAAA
Found at i:67336484 original size:126 final size:126
Alignment explanation
Indices: 67336252--67336622 Score: 526
Period size: 126 Copynumber: 2.9 Consensus size: 126
67336242 TATTTTTACT
* * *
67336252 CTGAAAAAATAATTTTGAGAAGACGTTTCTCAACAAATAGTGTCAAAAACACTTCAAGCAGGATG
1 CTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATG
* * * *
67336317 TACTGTCAGCAAAAATACAGAAAAAAGCTCCCACATAGACGCTCTTTTGCTACAATAGTTC
66 TAATGTCAGCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAATTC
* *
67336378 CTGAAAAAATAATTTTGAGAAAACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGATG
1 CTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATG
* *
67336443 TAATGTCAGCAAAAATAAAGAAAAAAGATCCCACGTGGACGCTCTTTTGCTACAATAATTC
66 TAATGTCAGCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAATTC
* * * * * * * * *
67336504 TTGAAAAAATAATTTTTAGAAGATGTATCTGAATAAATAGTATCAAGAATGCTTCAAGAAAGATG
1 CTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATG
* * * *
67336569 CAATGTCAGCAAAAATACAGAAAAAAGCTCCCATGTGAACGCTCTTTTTCTACA
66 TAATGTCAGCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACA
67336623 GCAGTTCATG
Statistics
Matches: 218, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
126 218 1.00
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.26
Consensus pattern (126 bp):
CTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATG
TAATGTCAGCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAATTC
Found at i:67337629 original size:46 final size:46
Alignment explanation
Indices: 67337569--67337880 Score: 385
Period size: 46 Copynumber: 7.0 Consensus size: 46
67337559 TTTGACATGA
* * * * * *
67337569 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
*** **
67337615 TGCCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATATCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAGGT
*
67337661 TGCCATGGTATCTTTCAACAATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAGGT
* *
67337707 TGCCATGGTATCTTTCAACCATGGTCTTATACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
*
67337753 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
67337799 TGCCATGGTATCTTTCAACCATGGTCTT--ACA----C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
67337837 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAG
67337881 AGAGCACACT
Statistics
Matches: 237, Mismatches: 19, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
38 34 0.14
40 3 0.01
43 1 0.00
44 3 0.01
45 4 0.02
46 189 0.80
47 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
Found at i:67337726 original size:92 final size:91
Alignment explanation
Indices: 67337569--67337880 Score: 424
Period size: 92 Copynumber: 3.5 Consensus size: 91
67337559 TTTGACATGA
* * * * * *
67337569 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAA
**
67337633 CCATGGTCTTGTTCATTTCATATCACAT
65 CCATGGTCTT-TTCATTTCATATCAGGT
*
67337661 TGCCATGGTATCTTTCAACAATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
* *
67337726 CATGGTCTTATACATTTTATATCAGGT
66 CATGGTCTT-TTCATTTCATATCAGGT
*
67337753 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
*
67337818 CATGGTC--TT-A---CA-CTCAGGT
66 CATGGTCTTTTCATTTCATATCAGGT
67337837 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
67337881 AGAGCACACT
Statistics
Matches: 202, Mismatches: 17, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
84 49 0.24
85 1 0.00
88 1 0.00
89 1 0.00
91 4 0.02
92 146 0.72
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTTTCATTTCATATCAGGT
Found at i:67337844 original size:38 final size:38
Alignment explanation
Indices: 67337793--67337868 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
67337783 ACATTTTATA
67337793 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
67337831 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
67337869 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:67340032 original size:11 final size:11
Alignment explanation
Indices: 67340016--67340067 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
67340006 TATACTAAAT
67340016 AAATAATAATA
1 AAATAATAATA
*
67340027 AAATAAT-ATT
1 AAATAATAATA
* *
67340037 AAATATCTCATA
1 AAATA-ATAATA
*
67340049 AAATATTAATA
1 AAATAATAATA
67340060 AAATAATA
1 AAATAATA
67340068 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:67347256 original size:20 final size:20
Alignment explanation
Indices: 67347218--67347256 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
67347208 CTTTTGTTAA
*
67347218 ATATTTAAAATATAGTTTAT
1 ATATTTAAAATAAAGTTTAT
* *
67347238 ATATTTAAATTAAATTTTA
1 ATATTTAAAATAAAGTTTA
67347257 CAAAAACTTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (20 bp):
ATATTTAAAATAAAGTTTAT
Found at i:67348159 original size:19 final size:21
Alignment explanation
Indices: 67348135--67348183 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 21
67348125 AAAGCGAATA
67348135 AAAATTTTTTACAAAA-AA-T-
1 AAAATTTTTT-CAAAATAAGTG
*
67348154 AAAATTTCTTCAAAATAAGTG
1 AAAATTTTTTCAAAATAAGTG
67348175 AAAATTTTT
1 AAAATTTTT
67348184 CTCCTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 5 0.20
19 11 0.44
20 1 0.04
21 8 0.32
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.39
Consensus pattern (21 bp):
AAAATTTTTTCAAAATAAGTG
Found at i:67348976 original size:24 final size:24
Alignment explanation
Indices: 67348943--67348988 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
67348933 TTTTATATTA
67348943 ATATTAATATTAAATAAATATAATT
1 ATATTAATATTAAATAAA-ATAATT
67348968 ATATT-ATATTAAATAAAATAA
1 ATATTAATATTAAATAAAATAA
67348989 AAATCGCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 4 0.19
24 12 0.57
25 5 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
ATATTAATATTAAATAAAATAATT
Found at i:67349058 original size:26 final size:25
Alignment explanation
Indices: 67349027--67349084 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
67349017 CCACCACTGT
*
67349027 ACTTCAACAT-CCATCTTTCCATGCAA
1 ACTTCAACATGCCATC-GTCC-TGCAA
67349053 ACTTCAA-ATGCCATCGTCCTGCAA
1 ACTTCAACATGCCATCGTCCTGCAA
*
67349077 ATTTCAAC
1 ACTTCAAC
67349085 CTCCCATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 11 0.39
25 5 0.18
26 12 0.43
ACGTcount: A:0.31, C:0.33, G:0.07, T:0.29
Consensus pattern (25 bp):
ACTTCAACATGCCATCGTCCTGCAA
Found at i:67353092 original size:86 final size:86
Alignment explanation
Indices: 67352903--67353413 Score: 825
Period size: 86 Copynumber: 6.0 Consensus size: 86
67352893 ATATTTAATT
* * * * * * * *
67352903 TTCAGCCTGTTACCCTACTGTTTAGAGGATTAAGGCTT-GTCATCTTTGATCTGTTTCC-CTACT
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-CTCCACTACT
** * *
67352966 GCTTAGGG-TTTTAGATCTGTAA
64 GCTTAGGGAGATAAGATCTGCAA
67352988 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
67353053 TTAGGGAGATAAGATCTGCAA
66 TTAGGGAGATAAGATCTGCAA
67353074 TTCAACCTGTTACCCTACTGCTTA-GGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
67353138 TTAGGGAGATAAGATCTGCAA
66 TTAGGGAGATAAGATCTGCAA
67353159 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
67353224 TTAGGGAGATAAGATCTGCAA
66 TTAGGGAGATAAGATCTGCAA
67353245 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
67353310 TTAGGGAGATAAGATCTGCAA
66 TTAGGGAGATAAGATCTGCAA
*
67353331 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGTTTCC-CTACTG
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTG-CTCCACTACTG
* *
67353395 CTTAGGGGGTTAAGATCTG
65 CTTAGGGAGATAAGATCTG
67353414 TAAATTTTCA
Statistics
Matches: 406, Mismatches: 15, Indels: 9
0.94 0.03 0.02
Matches are distributed among these distances:
84 5 0.01
85 141 0.35
86 257 0.63
87 3 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (86 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
TTAGGGAGATAAGATCTGCAA
Found at i:67353395 original size:172 final size:172
Alignment explanation
Indices: 67352903--67353413 Score: 825
Period size: 171 Copynumber: 3.0 Consensus size: 172
67352893 ATATTTAATT
* * * * * * * *
67352903 TTCAGCCTGTTACCCTACTGTTTAGAGGATTAAGGCTT-GTCATCTTTGATCTGTTTCC-CTACT
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-CTCCACTACT
** * *
67352966 GCTTAGGG-TTTTAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCG
64 GCTTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCG
67353030 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA
129 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA
67353074 TTCAACCTGTTACCCTACTGCTTA-GGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
67353138 TTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTC
66 TTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTC
67353203 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA
131 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA
67353245 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
67353310 TTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTC
66 TTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTC
* * *
67353375 TTCGATCTGTTTCC-CTACTGCTTAGGGGGTTAAGATCTG
131 TTCGATCTG-CTCCACTACTGCTTAGGGAGATAAGATCTG
67353414 TAAATTTTCA
Statistics
Matches: 320, Mismatches: 15, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
169 5 0.02
170 33 0.10
171 142 0.44
172 137 0.43
173 3 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (172 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
TTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTC
TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA
Found at i:67368157 original size:25 final size:24
Alignment explanation
Indices: 67368120--67368168 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
67368110 GGTGGGGGGG
*
67368120 TTATTTTCTTTAATACTAATATAA
1 TTATTTTATTTAATACTAATATAA
*
67368144 TTATATTTATTTAATATTAATATAA
1 TTAT-TTTATTTAATACTAATATAA
67368169 ATACAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (24 bp):
TTATTTTATTTAATACTAATATAA
Found at i:67368998 original size:6 final size:6
Alignment explanation
Indices: 67368989--67369029 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
67368979 ACTTTTAATT
67368989 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
67369030 TATTATGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTTAA
Found at i:67370776 original size:19 final size:19
Alignment explanation
Indices: 67370754--67370805 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
67370744 TGATTTTTTT
*
67370754 CTTTTCTTTTTTTTTTTAA
1 CTTTTCTTTTTTTCTTTAA
* *
67370773 CTTTTGTATTTTTCTTTAA
1 CTTTTCTTTTTTTCTTTAA
*
67370792 TTTTTCCTTTTTTT
1 CTTTT-CTTTTTTT
67370806 AAGTTTTATA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.10, C:0.12, G:0.02, T:0.77
Consensus pattern (19 bp):
CTTTTCTTTTTTTCTTTAA
Found at i:67370821 original size:19 final size:17
Alignment explanation
Indices: 67370762--67370848 Score: 54
Period size: 19 Copynumber: 4.9 Consensus size: 17
67370752 TTCTTTTCTT
67370762 TTTTTTTTTAACTTTTGTA
1 TTTTTTTTTAA-TTTT-TA
*
67370781 TTTTTCTTTAATTTTT-
1 TTTTTTTTTAATTTTTA
**
67370797 CCTTTTTTTAAGTTTTATA
1 TTTTTTTTTAA-TTTT-TA
*
67370816 TTTTTTCTT-A-TTTTA
1 TTTTTTTTTAATTTTTA
*
67370831 TTTTGTTTATTTATTTTT
1 TTTT-TTT-TTAATTTTT
67370849 TGTTATTAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 14
0.71 0.11 0.19
Matches are distributed among these distances:
15 6 0.11
16 13 0.25
17 7 0.13
18 7 0.13
19 20 0.38
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTTTTTTAATTTTTA
Found at i:67370854 original size:14 final size:14
Alignment explanation
Indices: 67370814--67370861 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
67370804 TTAAGTTTTA
*
67370814 TATTTTTTCTTATT
1 TATTTTTTGTTATT
*
67370828 T-TATTTTGTTTATT
1 TATTTTTTG-TTATT
67370842 TATTTTTTGTTATT
1 TATTTTTTGTTATT
*
67370856 AATTTT
1 TATTTT
67370862 AAAAAATTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 5 0.18
14 17 0.61
15 6 0.21
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (14 bp):
TATTTTTTGTTATT
Found at i:67370929 original size:21 final size:21
Alignment explanation
Indices: 67370890--67371000 Score: 89
Period size: 21 Copynumber: 5.0 Consensus size: 21
67370880 ATTTGAAATG
67370890 TTTTATAATATATATTTTTTAAAA
1 TTTTA-AATAT-TA-TTTTTAAAA
67370914 TTTTAAATATTATTTTTAAAA
1 TTTTAAATATTATTTTTAAAA
*
67370935 TTTTGAATATTATTTTTTAAATA
1 TTTTAAATATTA-TTTTTAAA-A
* * * *
67370958 TTATTTAAT-TTGTTTAATAATA
1 TT-TTAAATATTATTT-TTAAAA
*
67370980 TTTTAAATTATAATTTTTAAA
1 TTTTAAA-TATTATTTTTAAA
67371001 TTATTTGTAA
Statistics
Matches: 71, Mismatches: 10, Indels: 14
0.75 0.11 0.15
Matches are distributed among these distances:
21 24 0.34
22 20 0.28
23 17 0.24
24 10 0.14
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTTAAATATTATTTTTAAAA
Found at i:67370930 original size:22 final size:22
Alignment explanation
Indices: 67370890--67370955 Score: 98
Period size: 21 Copynumber: 3.0 Consensus size: 22
67370880 ATTTGAAATG
67370890 TTTTATAATATATATTTTTTAAAA
1 TTTTA-AATAT-TATTTTTTAAAA
67370914 TTTTAAATATTA-TTTTTAAAA
1 TTTTAAATATTATTTTTTAAAA
*
67370935 TTTTGAATATTATTTTTTAAA
1 TTTTAAATATTATTTTTTAAA
67370956 TATTATTTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
21 20 0.50
22 10 0.25
23 5 0.12
24 5 0.12
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTTAAATATTATTTTTTAAAA
Found at i:67370997 original size:14 final size:15
Alignment explanation
Indices: 67370974--67371004 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
67370964 AATTTGTTTA
67370974 ATAATATTTTAAATT
1 ATAATATTTTAAATT
67370989 ATAAT-TTTTAAATT
1 ATAATATTTTAAATT
67371003 AT
1 AT
67371005 TTGTAAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATAATATTTTAAATT
Found at i:67371269 original size:20 final size:19
Alignment explanation
Indices: 67371227--67371269 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
67371217 TATTTAAAAG
* * *
67371227 TTAAAAAATAATATTTTAT
1 TTAAAAAATAAAATTTGAA
67371246 TTAAAAAAGTAAAATTTGAA
1 TTAAAAAA-TAAAATTTGAA
67371266 TTAA
1 TTAA
67371270 TTAAAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (19 bp):
TTAAAAAATAAAATTTGAA
Found at i:67371300 original size:16 final size:17
Alignment explanation
Indices: 67371279--67371314 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
67371269 ATTAAAAAAT
67371279 AAAAA-TATTTGTTAAA
1 AAAAATTATTTGTTAAA
67371295 AAAAATTATTTGTTAAA
1 AAAAATTATTTGTTAAA
67371312 AAA
1 AAA
67371315 TACATTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
AAAAATTATTTGTTAAA
Found at i:67371381 original size:20 final size:20
Alignment explanation
Indices: 67371325--67371381 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
67371315 TACATTTATT
67371325 TTAAAATATATATATTAAAAAG
1 TTAAAA-ATATATATT-AAAAG
* *
67371347 -TAAAAATTTAAATTAAAAG
1 TTAAAAATATATATTAAAAG
67371366 TTAAAAATATATATTA
1 TTAAAAATATATATTA
67371382 TAAGGGGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 5 0.17
20 20 0.67
21 5 0.17
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (20 bp):
TTAAAAATATATATTAAAAG
Found at i:67371784 original size:40 final size:40
Alignment explanation
Indices: 67371739--67371815 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
67371729 AGTGTTGGTT
* * *
67371739 ATAATTTTTTTATTATAGTACACATTTATAAATTTATATA
1 ATAATTTTTTAATTATAATACACATTCATAAATTTATATA
*
67371779 ATAATTTTTTAATTTTAATACACATTCATAAATTTAT
1 ATAATTTTTTAATTATAATACACATTCATAAATTTAT
67371816 GTACTTAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.40, C:0.06, G:0.01, T:0.52
Consensus pattern (40 bp):
ATAATTTTTTAATTATAATACACATTCATAAATTTATATA
Found at i:67372050 original size:18 final size:17
Alignment explanation
Indices: 67372023--67372058 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
67372013 GAGAAAAACG
*
67372023 ATTTTTAATATATTTAAA
1 ATTTTAAATATA-TTAAA
67372041 ATTTTAAATATATTAAA
1 ATTTTAAATATATTAAA
67372058 A
1 A
67372059 GAAAATGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTTAAATATATTAAA
Found at i:67372126 original size:17 final size:17
Alignment explanation
Indices: 67372113--67372151 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
67372103 ATATTTAGAT
67372113 ATATTAAAATTTTAAAC
1 ATATTAAAATTTTAAAC
67372130 ATATTAAAATTTATAAGAC
1 ATATTAAAATTT-TAA-AC
67372149 ATA
1 ATA
67372152 ATTTCAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 12 0.60
18 3 0.15
19 5 0.25
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (17 bp):
ATATTAAAATTTTAAAC
Found at i:67372184 original size:21 final size:20
Alignment explanation
Indices: 67372160--67372198 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
67372150 TAATTTCAAA
*
67372160 AAAAAATAATATTCAAAATTT
1 AAAAAATAAT-TTAAAAATTT
67372181 AAAAAATAATTTAAAAAT
1 AAAAAATAATTTAAAAAT
67372199 AATATTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAAATAATTTAAAAATTT
Found at i:67372216 original size:21 final size:24
Alignment explanation
Indices: 67372190--67372233 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 24
67372180 TAAAAAATAA
67372190 TTTAAAA-ATA-ATATT-TAAAAT
1 TTTAAAATATATATATTATAAAAT
67372211 TTTAAAATATATATATTATAAAA
1 TTTAAAATATATATATTATAAAA
67372234 AAGTTCAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 7 0.35
22 3 0.15
23 5 0.25
24 5 0.25
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TTTAAAATATATATATTATAAAAT
Found at i:67372285 original size:14 final size:13
Alignment explanation
Indices: 67372262--67372315 Score: 56
Period size: 14 Copynumber: 4.0 Consensus size: 13
67372252 TAAATTTTTT
*
67372262 AAAATTAATAACAA
1 AAAATAAATAA-AA
*
67372276 AAAATAAATAAAC
1 AAAATAAATAAAA
67372289 AAAATAAAATAAAA
1 AAAAT-AAATAAAA
67372303 AAAA-AATATAAAA
1 AAAATAA-ATAAAA
67372316 CTTTAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
12 2 0.06
13 12 0.34
14 21 0.60
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAATAAATAAAA
Found at i:67372292 original size:13 final size:12
Alignment explanation
Indices: 67372274--67372315 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 12
67372264 AATTAATAAC
67372274 AAAAAATAAATA
1 AAAAAATAAATA
67372286 AACAAAATAAAATA
1 AA-AAAAT-AAATA
67372300 AAAAAA-AAATA
1 AAAAAATAAATA
67372311 TAAAA
1 -AAAA
67372316 CTTTAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 5 0.19
12 6 0.22
13 9 0.33
14 7 0.26
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAATAAATA
Found at i:67372313 original size:18 final size:18
Alignment explanation
Indices: 67372276--67372315 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
67372266 TTAATAACAA
*
67372276 AAAATAAATAAACAAAAT
1 AAAATAAATAAAAAAAAT
67372294 AAAATAAA-AAAAAAATAT
1 AAAATAAATAAAAAAA-AT
67372312 AAAA
1 AAAA
67372316 CTTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (18 bp):
AAAATAAATAAAAAAAAT
Found at i:67372326 original size:29 final size:29
Alignment explanation
Indices: 67372289--67372363 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
67372279 ATAAATAAAC
* *
67372289 AAAATAAAATAAAAAAAAAATATAAAACTT
1 AAAA-AAAATAAAAAAAAAAGACAAAACTT
* * * *
67372319 TAAAAAAATTAAAGAAAAAGACAAAAGTT
1 AAAAAAAATAAAAAAAAAAGACAAAACTT
67372348 AAAAAAAATAAAAAAA
1 AAAAAAAATAAAAAAA
67372364 TCAGATAGGT
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
29 33 0.92
30 3 0.08
ACGTcount: A:0.77, C:0.03, G:0.04, T:0.16
Consensus pattern (29 bp):
AAAAAAAATAAAAAAAAAAGACAAAACTT
Found at i:67375109 original size:21 final size:21
Alignment explanation
Indices: 67375083--67375143 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
67375073 TTTTACCTTC
67375083 AACCCTAAACCTAAAATCAT-G
1 AACCCTAAACCTAAAATC-TCG
* *
67375104 AACCCTAAATCTAGAATCTCG
1 AACCCTAAACCTAAAATCTCG
* *
67375125 AATCTTAAACCTAAAATCT
1 AACCCTAAACCTAAAATCT
67375144 TAAACTTGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 1 0.03
21 32 0.97
ACGTcount: A:0.44, C:0.26, G:0.05, T:0.25
Consensus pattern (21 bp):
AACCCTAAACCTAAAATCTCG
Found at i:67375319 original size:26 final size:26
Alignment explanation
Indices: 67375263--67375320 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
67375253 CCAAACACGT
* *
67375263 AACCTTAAACCTCGAACTCAAACCTTG
1 AACCTTAAACCTC-AACTCAAACCCTA
67375290 AACCTTAAATCCT-AACTCAAACCCTA
1 AACCTTAAA-CCTCAACTCAAACCCTA
67375316 AACCT
1 AACCT
67375321 CAAAGTTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 16 0.57
27 9 0.32
28 3 0.11
ACGTcount: A:0.40, C:0.34, G:0.03, T:0.22
Consensus pattern (26 bp):
AACCTTAAACCTCAACTCAAACCCTA
Found at i:67384437 original size:13 final size:13
Alignment explanation
Indices: 67384427--67384454 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
67384417 TCGTTTTTCA
67384427 TTCTTTCTTTTAT
1 TTCTTTCTTTTAT
67384440 TTCTTTCTTTTAT
1 TTCTTTCTTTTAT
67384453 TT
1 TT
67384455 TATTTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (13 bp):
TTCTTTCTTTTAT
Found at i:67388979 original size:20 final size:21
Alignment explanation
Indices: 67388963--67389003 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
67388953 CAAGTTTATG
**
67388963 GTTTGGGTTTGGGGTTT-TAA
1 GTTTGGGTTCAGGGTTTATAA
67388983 GTTTGGGTTCAGGGTTTATAA
1 GTTTGGGTTCAGGGTTTATAA
67389004 CTATATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.15, C:0.02, G:0.37, T:0.46
Consensus pattern (21 bp):
GTTTGGGTTCAGGGTTTATAA
Found at i:67390459 original size:15 final size:16
Alignment explanation
Indices: 67390439--67390473 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
67390429 TAAAAAAATC
67390439 ATTAAAA-TTTAAAAA
1 ATTAAAATTTTAAAAA
67390454 ATTAAAATTTTAAAAA
1 ATTAAAATTTTAAAAA
67390470 ATTA
1 ATTA
67390474 TTAGAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
ATTAAAATTTTAAAAA
Found at i:67391862 original size:21 final size:22
Alignment explanation
Indices: 67391829--67391877 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
67391819 AAATCTTAAC
* *
67391829 TTTTT-ATACAATTTTTAGA-A
1 TTTTTAATAAAATTTATAGATA
*
67391849 TTTTTAATAAAATTTATATATA
1 TTTTTAATAAAATTTATAGATA
67391871 TTTTTAA
1 TTTTTAA
67391878 AAATATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 5 0.21
21 11 0.46
22 8 0.33
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
TTTTTAATAAAATTTATAGATA
Found at i:67391887 original size:27 final size:24
Alignment explanation
Indices: 67391855--67391907 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 24
67391845 AGAATTTTTA
67391855 ATAAAATTTATATATATTTTTAAAAAT
1 ATAAAATTTA-A-AT-TTTTTAAAAAT
*
67391882 ATAAAATTTAAATTTTTTATAAAT
1 ATAAAATTTAAATTTTTTAAAAAT
67391906 AT
1 AT
67391908 TTTGAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 12 0.48
25 2 0.08
26 1 0.04
27 10 0.40
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
ATAAAATTTAAATTTTTTAAAAAT
Found at i:67391917 original size:19 final size:19
Alignment explanation
Indices: 67391895--67391957 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
67391885 AAATTTAAAT
67391895 TTTTTATAAA-TATTTTGAA
1 TTTTTA-AAATTATTTTGAA
*
67391914 TTTTAAAAATTATTTTGAAA
1 TTTTTAAAATTATTTTG-AA
* *
67391934 ATTTGAAAATTATTTTGAA
1 TTTTTAAAATTATTTTGAA
67391953 TTTTT
1 TTTTT
67391958 TTTATAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 3 0.08
19 17 0.46
20 17 0.46
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (19 bp):
TTTTTAAAATTATTTTGAA
Found at i:67391917 original size:20 final size:20
Alignment explanation
Indices: 67391892--67391958 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
67391882 ATAAAATTTA
67391892 AATTTTTTATAAA-TATTTTG
1 AATTTTTTA-AAATTATTTTG
*
67391912 AA-TTTTAAAAATTATTTTG
1 AATTTTTTAAAATTATTTTG
** *
67391931 AAAATTTGAAAATTATTTTG
1 AATTTTTTAAAATTATTTTG
67391951 AATTTTTT
1 AATTTTTT
67391959 TTATAATTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
18 3 0.08
19 14 0.36
20 22 0.56
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (20 bp):
AATTTTTTAAAATTATTTTG
Found at i:67396555 original size:207 final size:206
Alignment explanation
Indices: 67396042--67397064 Score: 1312
Period size: 207 Copynumber: 5.0 Consensus size: 206
67396032 TAGTATAGCT
* * * * * *
67396042 TGCGACAAATCTTCAATCATATGCCTCATCTTTGACAACTCTTTTTCTTGGCTTTGA-TTT-TC-
1 TGCGACAATTCTTCTATCATACGCCTCATCTCTGACAACTCTATTTGTTGGCTTTGATTTTCTCT
* * * ** *
67396104 TCTTGACCTTTTATATGTCCATTCATGGCTTAAAAGTGA-TTTCTAATATAAGTTATAGGATCTA
66 TCTTGACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTC-AATATAAGTCCTAAGATCTA
* * * *
67396168 ATTA-AGCTCTGATACCAAAATTGATGTCGTAAATTATTAGGTTGATTGAAAAACCTAAATAGCT
130 ATTAGA-CTCTGATACCAAAATTGATGTGGTAAATTATTAGGTTGAGTGGAAAATCTAAATAGCT
67396232 AAAAAAAATTAAAA
194 -AAAAAAATTAAAA
* * * *
67396246 T--GTCAATTCTTCTATCATA-GTCTCATCTCTGACAATTCTATTTGTTGGCTTTGATTTGCTCT
1 TGCGACAATTCTTCTATCATACGCCTCATCTCTGACAACTCTATTTGTTGGCTTTGATTTTCTCT
* * * *
67396308 TCATTGATCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATACAAGTCATAAAATCTA
66 TC-TTGACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATATAAGTCCTAAGATCTA
* *
67396373 ATTAGACTCTGATACCAAAATTGATGCGGTAAATTATTAGGTTGAGTGGAAATTCTAAATAGCTA
130 ATTAGACTCTGATACCAAAATTGATGTGGTAAATTATTAGGTTGAGTGGAAAATCTAAATAGCTA
*
67396438 AAAATATTAAAA
195 AAAAAATTAAAA
* *
67396450 TGCGACAATTCTTCTATCATATGCCTCATCTCTGACAACTCTATTTCTTGGCTTTGATTTTCTCT
1 TGCGACAATTCTTCTATCATACGCCTCATCTCTGACAACTCTATTTGTTGGCTTTGATTTTCTCT
*
67396515 TACTTTACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATATAAGTCCTAAGATCTA
66 T-CTTGACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATATAAGTCCTAAGATCTA
* *
67396580 ATTATG-CTCTGATACCAAAAATGATGTGGTAAATTATTAAGTTGAGTGGAAAATCTAAATAGCT
130 ATTA-GACTCTGATACCAAAATTGATGTGGTAAATTATTAGGTTGAGTGGAAAATCTAAATAGCT
67396644 AAAAAAATTAAAA
194 AAAAAAATTAAAA
* * * * *
67396657 TGGGACAATTCTTCTATCATGCGCCTCATCTCTAACCACTCTATTTGTTGGTTTTGATTTTCTCT
1 TGCGACAATTCTTCTATCATACGCCTCATCTCTGACAACTCTATTTGTTGGCTTTGATTTTCTCT
* * * * *
67396722 TCCTTGACCTCTTGTATGTTCAGTCATGGCTTAAAAGCGATTTCCAATATAAGTCCTAGGATCTA
66 T-CTTGACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATATAAGTCCTAAGATCTA
* * * * *
67396787 ATTAGGCTTTGATATCAAAATTGATGTGGTTAATTATTAGGTTGAGTGAAAAATCTAAATAG--A
130 ATTAGACTCTGATACCAAAATTGATGTGGTAAATTATTAGGTTGAGTGGAAAATCTAAATAGCTA
67396850 AAAAAATTTTAAAA
195 AAAAAA--TTAAAA
* * * * *
67396864 TGCGACAATTCTTCTATCATGCCCCTCATCTCTTACAACTCTCTTTGTTGGCTTTGATTTTCTTT
1 TGCGACAATTCTTCTATCATACGCCTCATCTCTGACAACTCTATTTGTTGGCTTTGATTTTCTCT
* * * * *
67396929 TCCTTGACCTCTTGTATTTCCAATCATAGCTTAAAAGTGATTTCCAATATAAGTCCTAAGATTTG
66 T-CTTGACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATATAAGTCCTAAGATCTA
* * * * * *
67396994 ATTAGGCTTTGATACAAAAAATGATGTGGTAAATTATTAAGTTGAGTGGAAAGTCTAAATAGCTA
130 ATTAGACTCTGATACCAAAATTGATGTGGTAAATTATTAGGTTGAGTGGAAAATCTAAATAGCTA
67397059 AAAAAA
195 AAAAAA
67397065 AATAGGAGAT
Statistics
Matches: 722, Mismatches: 81, Indels: 27
0.87 0.10 0.03
Matches are distributed among these distances:
201 30 0.04
202 17 0.02
203 2 0.00
204 16 0.02
205 112 0.16
206 23 0.03
207 513 0.71
208 2 0.00
209 7 0.01
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (206 bp):
TGCGACAATTCTTCTATCATACGCCTCATCTCTGACAACTCTATTTGTTGGCTTTGATTTTCTCT
TCTTGACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATATAAGTCCTAAGATCTAA
TTAGACTCTGATACCAAAATTGATGTGGTAAATTATTAGGTTGAGTGGAAAATCTAAATAGCTAA
AAAAATTAAAA
Found at i:67402646 original size:2 final size:2
Alignment explanation
Indices: 67402639--67402667 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
67402629 ATATAAGTAA
67402639 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67402668 TTGGGTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67403005 original size:11 final size:12
Alignment explanation
Indices: 67402987--67403017 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
67402977 GTTTCAATAG
67402987 TATTTTTTGAGT
1 TATTTTTTGAGT
67402999 T-TTTTTTGAGT
1 TATTTTTTGAGT
67403010 TATTTTTT
1 TATTTTTT
67403018 TGAATATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.74
Consensus pattern (12 bp):
TATTTTTTGAGT
Found at i:67405573 original size:18 final size:18
Alignment explanation
Indices: 67405550--67405610 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
67405540 ATTATATATT
67405550 TTTAATTATATTTTAAAA
1 TTTAATTATATTTTAAAA
* * * **
67405568 TTTAATGACATTATATATT
1 TTTAATTATATTTTA-AAA
67405587 TTTAATTATATTTTAAAA
1 TTTAATTATATTTTAAAA
67405605 TTTAAT
1 TTTAAT
67405611 GACATTATAT
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
18 19 0.59
19 13 0.41
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (18 bp):
TTTAATTATATTTTAAAA
Found at i:67405622 original size:39 final size:37
Alignment explanation
Indices: 67405536--67405648 Score: 181
Period size: 37 Copynumber: 3.0 Consensus size: 37
67405526 AAGGCAAAAT
67405536 TGACATTATATATTTTTAATTATATTTTAAAATTTAA
1 TGACATTATATATTTTTAATTATATTTTAAAATTTAA
67405573 TGACATTATATATTTTTAATTATATTTTAAAATTTAA
1 TGACATTATATATTTTTAATTATATTTTAAAATTTAA
* * *
67405610 TGACATTATATATTTTCAAAGTAATATATTAAAATTTAA
1 TGACATTATATATTTT-TAA-TTATATTTTAAAATTTAA
67405649 CAAATTTAAG
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 53 0.75
38 2 0.03
39 16 0.23
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (37 bp):
TGACATTATATATTTTTAATTATATTTTAAAATTTAA
Found at i:67407220 original size:35 final size:35
Alignment explanation
Indices: 67407153--67407320 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
67407143 TCCTCATTGA
*** *
67407153 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
67407189 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
67407229 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
67407264 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
67407299 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
67407321 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
35 74 0.63
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:67407279 original size:75 final size:73
Alignment explanation
Indices: 67407148--67407320 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 73
67407138 GGTTTTCCTC
*** * * **
67407148 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
67407213 TCAGTATGG
65 TCAGTATGG
*
67407222 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
67407286 ACTCAGTATGG
63 ACTCAGTATGG
67407297 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
67407321 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 4 0.05
75 46 0.52
76 15 0.17
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:67414239 original size:75 final size:73
Alignment explanation
Indices: 67414151--67414322 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
67414141 GGTTTTCCTC
*** * * **
67414151 ATTGAAATACCATACCTACATTTTTTAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
67414215 TCAGTATGG
65 TCAGTATGG
*
67414224 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
67414289 CTCAGTATGG
64 CTCAGTATGG
67414299 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
67414323 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:67414320 original size:35 final size:35
Alignment explanation
Indices: 67414156--67414322 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
67414146 TCCTCATTGA
*** *
67414156 AATACCATACCTACATTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
67414191 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
67414231 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
67414266 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
67414301 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
67414323 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
35 88 0.75
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:67417451 original size:23 final size:23
Alignment explanation
Indices: 67417416--67417468 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
67417406 AAAATTATAC
* *
67417416 CATCTTGGGTCTTACCATTTTCT
1 CATCTTTGGTCTTACCATTTGCT
* *
67417439 CATCTTTGTTCTTACTATTTGCT
1 CATCTTTGGTCTTACCATTTGCT
*
67417462 TATCTTT
1 CATCTTT
67417469 ATTATTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.09, T:0.55
Consensus pattern (23 bp):
CATCTTTGGTCTTACCATTTGCT
Found at i:67424309 original size:131 final size:129
Alignment explanation
Indices: 67424089--67424555 Score: 300
Period size: 131 Copynumber: 3.6 Consensus size: 129
67424079 TGGCAATCGT
* * * *
67424089 GGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTTAAAATAATCAAATATCCCTCC
1 GGAATCGTGCCCTATCGTGCTGGGTTGCAACTTCTCGTTTGCTCAAAACAATCAAATATCCCTCC
* *
67424154 AAAATTTCACGCATGTCTTCTAAAAATCATTT-AAAACGAAGGCAATATTC-AGTGATTGACAAT
66 AAAATTTCACGCATGTCATCTAAAAA-CATTTCAAAACAAAGG--ATATTCGA-TGATTGACAAT
67424217 TCG
127 TCG
* ** * * **
67424220 GGAATCATGCCCTATCGTGCTGGGTTGTGACTTCTCGTTTGCTCAAAACAATCTAATATTCCTTT
1 GGAATCGTGCCCTATCGTGCTGGGTTGCAACTTCTCGTTTGCTCAAAACAATCAAATATCCCTCC
*** * * * * * * *
67424285 AGGTTTTCACTCATGTTCAT-TAAAAACCTTTCAAAACAAAGGATGTTCGATGTTTGGCGATTTG
66 AAAATTTCACGCATG-TCATCTAAAAACATTTCAAAACAAAGGATATTCGATGATTGACAATTCG
* * * * * * * * * *
67424349 AGAATCGTGCCCTATCGTGCTGGGTTGC-GCTTTTTCATTCGCCCTAAACAATCGAAGATCCCTT
1 GGAATCGTGCCCTATCGTGCTGGGTTGCAAC-TTCTCGTTTGCTCAAAACAATCAAATATCCCTC
* ** * ** * * * * * *
67424413 CAAAGTTTCATTCACGTTTTCTAAAAACCCTTT-AAAACGAAAGAAGTGTTCGATGTTTGGCAGT
65 CAAAATTTCACGCATGTCATCTAAAAA-CATTTCAAAAC-AAAGGA-TATTCGATGATTGACAAT
67424477 TCGG
127 TC-G
* * * * * *
67424481 GGAATAGTACCCTATCGTGCTGGGTTGCAA-TCTCTCGTCTG-TCCAAAATAATCGAATATCTCT
1 GGAATCGTGCCCTATCGTGCTGGGTTGCAACT-TCTCGTTTGCT-CAAAACAATCAAATATCCCT
**
67424544 CCGGAATTTCAC
64 CCAAAATTTCAC
67424556 TCGTATTTTC
Statistics
Matches: 259, Mismatches: 65, Indels: 23
0.75 0.19 0.07
Matches are distributed among these distances:
128 3 0.01
129 86 0.33
130 15 0.06
131 98 0.38
132 57 0.22
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (129 bp):
GGAATCGTGCCCTATCGTGCTGGGTTGCAACTTCTCGTTTGCTCAAAACAATCAAATATCCCTCC
AAAATTTCACGCATGTCATCTAAAAACATTTCAAAACAAAGGATATTCGATGATTGACAATTCG
Found at i:67424398 original size:129 final size:132
Alignment explanation
Indices: 67424090--67424508 Score: 313
Period size: 131 Copynumber: 3.2 Consensus size: 132
67424080 GGCAATCGTG
* * * * * ** * * * *
67424090 GAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTTAAAATAATCAAATATCCCTCCA
1 GAATCGTGCCCTATCGTGCTGGGTTGCGACTTCTCATTCGCCCAAAACAATCGAAGATCCCTTCA
* * * * * * * * * *
67424155 AAATTTCACGCATGTCT-TCTAAAAATCATTTAAAACGAAGGCAA-TATTC-AGTGATTGACAAT
66 AAGTTTCACTCACGT-TATCTAAAAACCCTTTAAAACGAAAG-AAGTGTTCGA-TGTTTGGCAGT
67424217 TCGG-
128 TCGGA
* * * * * * * * *
67424221 GAATCATGCCCTATCGTGCTGGGTTGTGACTTCTCGTTTGCTCAAAACAATCTAATATTCCTT-T
1 GAATCGTGCCCTATCGTGCTGGGTTGCGACTTCTCATTCGCCCAAAACAATCGAAGATCCCTTCA
* * *
67424285 AGGTTTTCACTCATGTTCAT-TAAAAA-CCTTTCAAAAC-AAAGGA-TGTTCGATGTTTGGC-GA
66 AAG-TTTCACTCACGTT-ATCTAAAAACCCTTT-AAAACGAAAGAAGTGTTCGATGTTTGGCAG-
*
67424345 TT-TGA
127 TTCGGA
* *
67424350 GAATCGTGCCCTATCGTGCTGGGTTGCG-CTTTTTCATTCGCCCTAAACAATCGAAGATCCCTTC
1 GAATCGTGCCCTATCGTGCTGGGTTGCGAC-TTCTCATTCGCCCAAAACAATCGAAGATCCCTTC
* *
67424414 AAAGTTTCATTCACGTTTTCTAAAAACCCTTTAAAACGAAAGAAGTGTTCGATGTTTGGCAGTTC
65 AAAGTTTCACTCACGTTATCTAAAAACCCTTTAAAACGAAAGAAGTGTTCGATGTTTGGCAGTTC
*
67424479 GGG
130 GGA
* *
67424482 GAATAGTACCCTATCGTGCTGGGTTGC
1 GAATCGTGCCCTATCGTGCTGGGTTGC
67424509 AATCTCTCGT
Statistics
Matches: 231, Mismatches: 42, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
128 3 0.01
129 86 0.37
130 22 0.10
131 92 0.40
132 28 0.12
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (132 bp):
GAATCGTGCCCTATCGTGCTGGGTTGCGACTTCTCATTCGCCCAAAACAATCGAAGATCCCTTCA
AAGTTTCACTCACGTTATCTAAAAACCCTTTAAAACGAAAGAAGTGTTCGATGTTTGGCAGTTCG
GA
Found at i:67436142 original size:44 final size:44
Alignment explanation
Indices: 67436092--67436450 Score: 511
Period size: 44 Copynumber: 8.2 Consensus size: 44
67436082 GGTAAATCCT
* * *
67436092 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATA
** * * * *
67436136 GCAGATTTGGTGTCTCTGTTTTGGCGGAGAACAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATA
67436180 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATA
* * * *
67436224 GCTGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATA
* *
67436268 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATA
* * *
67436312 GCAGATTTGGCATCTCTGTATTGTCAGAGGGCAGATTAAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATA
* *
67436356 GTAGATTTGGCATCTCTGTATTGGCAGAGGGCAGATCAAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATA
* *
67436400 GTAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAAATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATA
*
67436444 ACAGATT
1 GCAGATT
67436451 GGTGTTCCCG
Statistics
Matches: 288, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 288 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (44 bp):
GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATA
Found at i:67439323 original size:129 final size:132
Alignment explanation
Indices: 67439015--67439433 Score: 309
Period size: 131 Copynumber: 3.2 Consensus size: 132
67439005 GGCAATCGTG
* * * * * ** * * * * *
67439015 GAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTTAAAATAATCAAATATCCCTCCA
1 GAATCGTGCCCTATCGTGCTGGGTTGCGACTTCTCATTCGCCCAAAACAATCGAAGATCCCTTCG
* * * * * * * ** * * * *
67439080 AAATTTCACGCATGTCTTCTAAAAATCATTTAAAACGAAGGCAA-TATTCGGTGATTGACAATTC
66 AAGTTTCACTCACGTTTTCTAAAAACCCTTTAAAACGAAAG-AAGTGCTCGATGTTTGGCAGTTC
67439144 GG-
130 GGA
* * * * * * * *
67439146 GAATCATGCCCTATCGTGCTGGGTTGTGACTTCTCGTTTGCTCAAAACAATCGAATATTCCTT-T
1 GAATCGTGCCCTATCGTGCTGGGTTGCGACTTCTCATTCGCCCAAAACAATCGAAGATCCCTTCG
* * *
67439210 AGGTTTTCACTCATGTTTAT-TAAAAA-CCTTTCAAAAC-AAAGGA-TGCTCGATGTTTGGC-GA
66 AAG-TTTCACTCACGTTT-TCTAAAAACCCTTT-AAAACGAAAGAAGTGCTCGATGTTTGGCAG-
*
67439270 TT-TGA
127 TTCGGA
* * *
67439275 GAATCGTGCCCTTTCGTGCTGGGTTGCG-CTTTTTCATTCGCCCTAAACAATCGAAGATCCCTTC
1 GAATCGTGCCCTATCGTGCTGGGTTGCGAC-TTCTCATTCGCCCAAAACAATCGAAGATCCCTTC
* *
67439339 GAAGTTTCATTCACGTTTTCTAAAAACCCTTTAAAACGAAAGAAGTGTTCGATGTTTGGCAGTTC
65 GAAGTTTCACTCACGTTTTCTAAAAACCCTTTAAAACGAAAGAAGTGCTCGATGTTTGGCAGTTC
*
67439404 GGG
130 GGA
* *
67439407 GAATAGTGCCCTATCGTGCTAGGTTGC
1 GAATCGTGCCCTATCGTGCTGGGTTGC
67439434 AATCTCCCGT
Statistics
Matches: 229, Mismatches: 46, Indels: 25
0.76 0.15 0.08
Matches are distributed among these distances:
128 3 0.01
129 87 0.38
130 20 0.09
131 92 0.40
132 27 0.12
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (132 bp):
GAATCGTGCCCTATCGTGCTGGGTTGCGACTTCTCATTCGCCCAAAACAATCGAAGATCCCTTCG
AAGTTTCACTCACGTTTTCTAAAAACCCTTTAAAACGAAAGAAGTGCTCGATGTTTGGCAGTTCG
GA
Found at i:67441418 original size:26 final size:26
Alignment explanation
Indices: 67441345--67441406 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
67441335 TTTCTCACCC
**
67441345 CAATTTTACCGTAG-TAAAATTTTGA
1 CAATTTTACCCCAGATAAAATTTTGA
* *
67441370 TAATTTTACCCCAGGTAAAATTTTGA
1 CAATTTTACCCCAGATAAAATTTTGA
*
67441396 CGATTTTACCC
1 CAATTTTACCC
67441407 TTAATAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
25 11 0.35
26 20 0.65
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (26 bp):
CAATTTTACCCCAGATAAAATTTTGA
Found at i:67441579 original size:12 final size:12
Alignment explanation
Indices: 67441562--67441595 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
67441552 TGATTGTAAG
67441562 TTTCCATTTTCA
1 TTTCCATTTTCA
*
67441574 TTTCCATTTCCA
1 TTTCCATTTTCA
*
67441586 TTTTCATTTT
1 TTTCCATTTT
67441596 TGGAAACCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.15, C:0.24, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTCCATTTTCA
Done.