Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 232 of 292
Found at i:67443765 original size:21 final size:20
Alignment explanation
Indices: 67443740--67443786 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
67443730 CTAAAATGTG
*
67443740 AATTTAATTGAATTGAATATA
1 AATTTAATTAAATTGAAT-TA
* *
67443761 AATTTTATTAAATTGAGTTA
1 AATTTAATTAAATTGAATTA
67443781 AATTTA
1 AATTTA
67443787 CCCGTATAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.47
Consensus pattern (20 bp):
AATTTAATTAAATTGAATTA
Found at i:67444303 original size:25 final size:24
Alignment explanation
Indices: 67444249--67444343 Score: 86
Period size: 25 Copynumber: 3.9 Consensus size: 24
67444239 GGCTCTTTGT
* *
67444249 GAGCGTCCCGATTAATGGCTCTCC
1 GAGCTTCCCGATTAATGGCTCTCA
*
67444273 GAAGCTTCCTGATTAATGGCTCTTCA
1 G-AGCTTCCCGATTAATGGCTC-TCA
* * *
67444299 GAGCTACCCG-TTATTGGCTCACA
1 GAGCTTCCCGATTAATGGCTCTCA
*
67444322 TGAGCTTCTCGATT-ATGGCTCT
1 -GAGCTTCCCGATTAATGGCTCT
67444344 TATGAGTTTC
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
23 2 0.04
24 24 0.43
25 27 0.48
26 3 0.05
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.32
Consensus pattern (24 bp):
GAGCTTCCCGATTAATGGCTCTCA
Found at i:67444348 original size:24 final size:25
Alignment explanation
Indices: 67444218--67444354 Score: 93
Period size: 24 Copynumber: 5.5 Consensus size: 25
67444208 CACCACAACA
* * *
67444218 CTTATGAGCGTCTCGATTAAAGGCT
1 CTTATGAGCTTCCCGATTAATGGCT
* *
67444243 CTTTGTGAGCGTCCCGATTAATGGCT
1 C-TTATGAGCTTCCCGATTAATGGCT
** *
67444269 C-TCCGAAGCTTCCTGATTAATGGCT
1 CTTATG-AGCTTCCCGATTAATGGCT
* *
67444294 CTTCA-GAGCTACCCG-TTATTGGCT
1 CTT-ATGAGCTTCCCGATTAATGGCT
** *
67444318 CACATGAGCTTCTCGATT-ATGGCT
1 CTTATGAGCTTCCCGATTAATGGCT
*
67444342 CTTATGAGTTTCC
1 CTTATGAGCTTCC
67444355 TGTTATACAA
Statistics
Matches: 86, Mismatches: 20, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
23 1 0.01
24 33 0.38
25 28 0.33
26 24 0.28
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (25 bp):
CTTATGAGCTTCCCGATTAATGGCT
Found at i:67464479 original size:10 final size:9
Alignment explanation
Indices: 67464456--67464502 Score: 51
Period size: 10 Copynumber: 4.9 Consensus size: 9
67464446 ATTTTTCCAT
67464456 AAATAAATA
1 AAATAAATA
67464465 GAAATAGAA-A
1 -AAATA-AATA
67464475 TAAATAATATA
1 -AAATAA-ATA
67464486 AAATAAATA
1 AAATAAATA
67464495 AAATAAAT
1 AAATAAAT
67464503 TTGAATTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
9 12 0.36
10 18 0.55
11 3 0.09
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.23
Consensus pattern (9 bp):
AAATAAATA
Found at i:67484920 original size:8 final size:8
Alignment explanation
Indices: 67484907--67484931 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
67484897 CCACAAGCAT
67484907 AAATAAAA
1 AAATAAAA
67484915 AAATAAAA
1 AAATAAAA
67484923 AAATAAAA
1 AAATAAAA
67484931 A
1 A
67484932 TAAAAGAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAATAAAA
Found at i:67491027 original size:11 final size:11
Alignment explanation
Indices: 67491013--67491064 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
67491003 TCTTTCAATA
67491013 TTCTCTCAAAT
1 TTCTCTCAAAT
67491024 TTCTCTCAAA-
1 TTCTCTCAAAT
67491034 -TCTCTCAAAT
1 TTCTCTCAAAT
*
67491044 TTCTCTTAAAT
1 TTCTCTCAAAT
*
67491055 TCCTCTCAAA
1 TTCTCTCAAA
67491065 ACTCTAGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 9 0.25
11 27 0.75
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:67491039 original size:20 final size:21
Alignment explanation
Indices: 67491007--67491064 Score: 82
Period size: 20 Copynumber: 2.7 Consensus size: 21
67490997 CTTCAATCTT
67491007 TCAATATTCTCTCAAATTTCTC
1 TCAA-ATTCTCTCAAATTTCTC
67491029 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTTCTC
*
67491049 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
67491065 ACTCTAGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 19 0.58
21 2 0.06
22 12 0.36
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTTCTC
Found at i:67491120 original size:16 final size:15
Alignment explanation
Indices: 67491091--67491121 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
67491081 TCAAAAAAGC
*
67491091 TCTAATTTTATTTTT
1 TCTAAATTTATTTTT
67491106 TCTAAATTTATTTTT
1 TCTAAATTTATTTTT
67491121 T
1 T
67491122 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTAAATTTATTTTT
Found at i:67492235 original size:7 final size:7
Alignment explanation
Indices: 67492223--67492256 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
67492213 TAGTGGATTC
67492223 GTATTTA
1 GTATTTA
67492230 GTATTTA
1 GTATTTA
67492237 GTATTTA
1 GTATTTA
67492244 GTATTTA
1 GTATTTA
67492251 GTATTT
1 GTATTT
67492257 TTTATTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (7 bp):
GTATTTA
Found at i:67492806 original size:30 final size:30
Alignment explanation
Indices: 67492756--67492819 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
67492746 ACGACGCAGA
*
67492756 CCCATCAACAGCACCCACACAATCACCCGG
1 CCCAGCAACAGCACCCACACAATCACCCGG
* * * *
67492786 CCCAGCAACAGGACCTACACAGTCACCGGG
1 CCCAGCAACAGCACCCACACAATCACCCGG
67492816 CCCA
1 CCCA
67492820 ACAGTTCAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (30 bp):
CCCAGCAACAGCACCCACACAATCACCCGG
Found at i:67492896 original size:18 final size:18
Alignment explanation
Indices: 67492873--67492915 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
67492863 TGCCAAGTAC
*
67492873 GTATCCTAGCCCTTTTAT
1 GTATCCTAGCCCTTATAT
67492891 GTATCCTAGCCCTTATAT
1 GTATCCTAGCCCTTATAT
*
67492909 GTTTCCT
1 GTATCCT
67492916 TTTTCTTGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.12, T:0.44
Consensus pattern (18 bp):
GTATCCTAGCCCTTATAT
Found at i:67493504 original size:116 final size:116
Alignment explanation
Indices: 67493300--67493779 Score: 883
Period size: 116 Copynumber: 4.2 Consensus size: 116
67493290 TATTTATACA
* *
67493300 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAATGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
67493365 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
67493416 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
67493481 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* *
67493532 AACATTTTGAATATTTTTATACTATTTCATGTAATTAGATAAAAGGTTATTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
67493597 T-TAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* *
67493647 AACATTTTAAATA-TTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAATAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
67493711 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
67493762 AACATTTTGAATATTTTT
1 AACATTTTGAATATTTTT
67493780 GTCGAAACCA
Statistics
Matches: 352, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
114 49 0.14
115 122 0.35
116 181 0.51
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:67493731 original size:230 final size:232
Alignment explanation
Indices: 67493300--67493779 Score: 883
Period size: 230 Copynumber: 2.1 Consensus size: 232
67493290 TATTTATACA
* * * *
67493300 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAATGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATACTATTTCATGTAATTAGATAAAAGGTTATTTTAAATAAAGTAAT
*
67493365 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGCAACATTTTGAATAT
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGCAACATTTTAAATAT
*
67493430 TTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTACTTTT
131 TTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAATAATTATAATTTACTTTT
67493495 ATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
196 ATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
67493532 AACATTTTGAATATTTTTATACTATTTCATGTAATTAGATAAAAGGTTATTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATACTATTTCATGTAATTAGATAAAAGGTTATTTTAAATAAAGTAAT
67493597 T-TAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGCAACATTTTAAATA-
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGCAACATTTTAAATAT
*
67493660 TTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAATAATTGTAATTTACTTTT
131 TTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAATAATTATAATTTACTTTT
67493725 ATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
196 ATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
67493762 AACATTTTGAATATTTTT
1 AACATTTTGAATATTTTT
67493780 GTCGAAACCA
Statistics
Matches: 241, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
230 118 0.49
231 61 0.25
232 62 0.26
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (232 bp):
AACATTTTGAATATTTTTATACTATTTCATGTAATTAGATAAAAGGTTATTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGCAACATTTTAAATAT
TTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAATAATTATAATTTACTTTT
ATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:67498296 original size:126 final size:126
Alignment explanation
Indices: 67498066--67498486 Score: 603
Period size: 126 Copynumber: 3.3 Consensus size: 126
67498056 GCCCAAGTTA
* * *
67498066 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACGTGGAAGTTTCTTTCAGTACTTTTACTGAAAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
** *
67498131 TGCATCTTGCTTGAAGCGTTTTTGACACTATTTATGCAGACGCGTCTTCTTAAAATTATTT
66 TGCATCTTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTTAAAATTATTT
* * * * * *
67498192 TTTCAGAGACCACTGTAGCAAAATAGCATCCACGTGGGAGCTTCTTCCAGTAATATTGCTGAAAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
* * *
67498257 TGCATCATGCTTGAAGCGTTTTT-ACCACTATTTGCGCAGACACGTATTCTCAAAATTATTT
66 TGCATCTTGCTTGAAGCGTTTTTGA-CACTATTTGCGCAGACACGTCTTCTTAAAATTATTT
* * *
67498318 TTTCGGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
*
67498383 TGCATCTTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTT-TTCAAATTTATTT
66 TGCATCTTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTT-AAAATTATTT
* * * *
67498444 TTTCAGATACTACTATAGCAAAAGAGCGTCCACGTAGAAGCTT
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGAAGCTT
67498487 TTTTAGATTA
Statistics
Matches: 260, Mismatches: 32, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
125 2 0.01
126 257 0.99
127 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (126 bp):
TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
TGCATCTTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTTAAAATTATTT
Found at i:67498780 original size:16 final size:16
Alignment explanation
Indices: 67498759--67498800 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
67498749 TTTATTCCTT
67498759 AAAACCCTAAGATTT-A
1 AAAACCCTAA-ATTTCA
* *
67498775 AAAACCCCAAATTTCC
1 AAAACCCTAAATTTCA
67498791 AAAACCCTAA
1 AAAACCCTAA
67498801 CACAGAAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.50, C:0.29, G:0.02, T:0.19
Consensus pattern (16 bp):
AAAACCCTAAATTTCA
Found at i:67500569 original size:3 final size:3
Alignment explanation
Indices: 67500561--67500611 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
67500551 GTAAAATTTG
67500561 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
67500609 ATA
1 ATA
67500612 GCAACACTTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:67500934 original size:3 final size:3
Alignment explanation
Indices: 67500926--67500950 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
67500916 CATACAATTA
67500926 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
67500951 TAGATACTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:67501429 original size:16 final size:16
Alignment explanation
Indices: 67501408--67501440 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
67501398 GATTAATTTA
67501408 TTTAAAACAAATAGAT
1 TTTAAAACAAATAGAT
*
67501424 TTTAAAATAAATAGAT
1 TTTAAAACAAATAGAT
67501440 T
1 T
67501441 AATTTACATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (16 bp):
TTTAAAACAAATAGAT
Found at i:67503047 original size:384 final size:382
Alignment explanation
Indices: 67502104--67503205 Score: 1566
Period size: 384 Copynumber: 2.8 Consensus size: 382
67502094 GACACCGATC
67502104 GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTC
1 GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTC
*
67502169 GGGTTCAAAATCCTGAAACAATCGGATCCTTCTTTTTTTTTTTGCCATCTTCGGATATGGCCGAT
66 GGGTTCAAAATCCTGAAACAGTCGGA----TC--TTTTTTTTT-CCATCTTCGGATATGGCCGAT
* *
67502234 CTCGGCTAAACTCGACCCGAGTCGTTCCTGAAAGAATAAGGGAATCCTTGCCTGCCGACCGTTGA
124 CT-GGCTAAACTCGACCCGAGTCGTTCCTGAAAGAATAAGGGAATCCCTGCCTGCCGTCCGTTGA
* *
67502299 TTAGAA-----GT--GG--GTTAAGACTGTGATTCCTGATTTACTGTTGAAGAAGATTAAGAGGA
188 TTA-AAGGTGGGTGAGGAAGTTAAGACTGTGATTCCTGATTCACTGTTGAAGAAGAATAAGAGGA
* *
67502355 ATGAAGAATGGGAGCTTGCTAAAAAGCAGGAACTGGAAGCTGCAGAGAGGAAGAAAGTCGAGAAC
252 ATGAAGAATGGGAGCTTGCTAAAAAGCAGGAACTCGAAGCTGCAAAGAGGAAGAAAGTCGAGAAC
* * *
67502420 CGCAAAGCTCATTTACTGAAGAGCTATGCAGTATGCAAAAGAGTCTGAGAGTCAGGTATATTTGA
317 CGC-AAG--------CT--A-AGCTATGCAGTATGCAAAAGACTATGAGAGTCAGGTATATGTGA
*
67502485 GAGTAAAAGCTAT
370 GAGTAAAACCTAT
67502498 GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGCGTGTTCGATTCACG
1 GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTT--GCGTGTTCGATTCACG
* * ** * *
67502563 TCGGGTTCAAAATCTTGGAACAGTCGGATC-TTTTTTTGGCATCTTCGTACATGGCCGATCTGGG
64 TCGGGTTCAAAATCCTGAAACAGTCGGATCTTTTTTTTTCCATCTTCGGATATGGCCGATCT-GG
* *
67502627 CTAAACTCGACCCGAATCGTTCCTGAAAGAATAAGGGAATCCCTGCCTGCCGTCCGTCGATTAAA
128 CTAAACTCGACCCGAGTCGTTCCTGAAAGAATAAGGGAATCCCTGCCTGCCGTCCGTTGATTAAA
67502692 GGTGGGTGAGGAAGTTAAGACTGTGATTCCTGATTCACTGTTGAAGAAGAATAAGAGGAATGAAG
193 GGTGGGTGAGGAAGTTAAGACTGTGATTCCTGATTCACTGTTGAAGAAGAATAAGAGGAATGAAG
* * *
67502757 AATGGGAGCCTGCTAAAAAGCAGGAACTCGAAGCTGCAAAGAGGAAGAATGTCGAGAAACGCAAG
258 AATGGGAGCTTGCTAAAAAGCAGGAACTCGAAGCTGCAAAGAGGAAGAAAGTCGAGAACCGCAAG
*
67502822 CT-AGCTATGCAGTATGCAAAAGACTATGAG-GCTCAGGTATATGTGATG-GTGAAACCTAAT
323 CTAAGCTATGCAGTATGCAAAAGACTATGAGAG-TCAGGTATATGTGA-GAGTAAAACCT-AT
* * *
67502882 GGATCCGTGGCGCAATGGTAGCGCTTCTGACTCCAGATCAGAAGGTTGTGTGTTAGATTCACGTC
1 GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTC
*
67502947 GGGTTCAAAATCCTGAAACAGTCGGATCTATTTTTTTTCCCTCTTCGGATATGGCCGATCTGAGC
66 GGGTTCAAAATCCTGAAACAGTCGGATCT-TTTTTTTTCCATCTTCGGATATGGCCGATCTG-GC
* *
67503012 TAAACTCGACCCGAGTCGTTCCTGAATGAATAAGGGAATCCCTGCCTGCCGTCCGTTGATTAGAG
129 TAAACTCGACCCGAGTCGTTCCTGAAAGAATAAGGGAATCCCTGCCTGCCGTCCGTTGATTAAAG
*
67503077 GTGGGTGAGGAAGTTAAGACTGTGATTCCTGATTCACCGTTGAAGAAGAATAAGAGGAATGAAGA
194 GTGGGTGAGGAAGTTAAGACTGTGATTCCTGATTCACTGTTGAAGAAGAATAAGAGGAATGAAGA
*
67503142 A-GGGAGCTTGCTAAAAAGCAGGAACTCGAAGCTGCAAAGAGGAAGAAAGTCTAGAACCGCAAGC
259 ATGGGAGCTTGCTAAAAAGCAGGAACTCGAAGCTGCAAAGAGGAAGAAAGTCGAGAACCGCAAGC
67503206 CCATTTACTC
Statistics
Matches: 648, Mismatches: 43, Indels: 45
0.88 0.06 0.06
Matches are distributed among these distances:
382 43 0.07
383 106 0.16
384 203 0.31
387 4 0.01
388 81 0.12
389 7 0.01
392 4 0.01
394 49 0.08
395 3 0.00
396 148 0.23
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (382 bp):
GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTC
GGGTTCAAAATCCTGAAACAGTCGGATCTTTTTTTTTCCATCTTCGGATATGGCCGATCTGGCTA
AACTCGACCCGAGTCGTTCCTGAAAGAATAAGGGAATCCCTGCCTGCCGTCCGTTGATTAAAGGT
GGGTGAGGAAGTTAAGACTGTGATTCCTGATTCACTGTTGAAGAAGAATAAGAGGAATGAAGAAT
GGGAGCTTGCTAAAAAGCAGGAACTCGAAGCTGCAAAGAGGAAGAAAGTCGAGAACCGCAAGCTA
AGCTATGCAGTATGCAAAAGACTATGAGAGTCAGGTATATGTGAGAGTAAAACCTAT
Found at i:67515407 original size:26 final size:26
Alignment explanation
Indices: 67515376--67515435 Score: 93
Period size: 27 Copynumber: 2.3 Consensus size: 26
67515366 GTGTTTCTCA
*
67515376 ACAAGGGCCTATATGTGGACAACCTC
1 ACAAGGGCCTACATGTGGACAACCTC
*
67515402 ACAAGGGGTCTACATGTGGACAACCTC
1 ACAA-GGGCCTACATGTGGACAACCTC
67515429 ACAAGGG
1 ACAAGGG
67515436 GTGGTTGACC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 7 0.23
27 24 0.77
ACGTcount: A:0.32, C:0.25, G:0.27, T:0.17
Consensus pattern (26 bp):
ACAAGGGCCTACATGTGGACAACCTC
Found at i:67517430 original size:23 final size:22
Alignment explanation
Indices: 67517389--67517440 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
67517379 TTAACTGACT
* *
67517389 TATTTAAAATATTATAAAATATA
1 TATTTAAAATATGATAAAA-AAA
67517412 TATTTAAAATAATGA-AAAAAAA
1 TATTTAAAAT-ATGATAAAAAAA
67517434 TATTTAA
1 TATTTAA
67517441 GTGACTTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
23 14 0.54
24 3 0.12
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
TATTTAAAATATGATAAAAAAA
Found at i:67517436 original size:22 final size:22
Alignment explanation
Indices: 67517389--67517440 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
67517379 TTAACTGACT
* *
67517389 TATTTAAAATATTATAAAATATA
1 TATTTAAAATA-TATAAAAAAAA
67517412 TATTTAAAATA-ATGAAAAAAAA
1 TATTTAAAATATAT-AAAAAAAA
67517434 TATTTAA
1 TATTTAA
67517441 GTGACTTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 2 0.08
22 13 0.50
23 11 0.42
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
TATTTAAAATATATAAAAAAAA
Found at i:67523364 original size:18 final size:18
Alignment explanation
Indices: 67523338--67523380 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
67523328 TTTATTTTCA
*
67523338 ATTTATTGATGT-TTTTAGT
1 ATTT-TTGATGTATTATA-T
67523357 ATTTTTGATGTATTATAT
1 ATTTTTGATGTATTATAT
67523375 ATTTTT
1 ATTTTT
67523381 AAAAAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (18 bp):
ATTTTTGATGTATTATAT
Found at i:67523404 original size:13 final size:13
Alignment explanation
Indices: 67523380--67523416 Score: 53
Period size: 11 Copynumber: 3.1 Consensus size: 13
67523370 TATATATTTT
67523380 TAAAAAATT-ATA
1 TAAAAAATTAATA
67523392 T-AAAAA-TAATA
1 TAAAAAATTAATA
67523403 TAAAAAATTAATA
1 TAAAAAATTAATA
67523416 T
1 T
67523417 GGGTGGACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.05
11 9 0.41
12 6 0.27
13 6 0.27
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAAAAATTAATA
Found at i:67525113 original size:31 final size:31
Alignment explanation
Indices: 67525078--67525144 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
67525068 CTTCCTGCAT
* *
67525078 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
67525109 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
67525140 TAAAA
1 TAAAA
67525145 AATATAACCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.60, C:0.18, G:0.04, T:0.18
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:67530979 original size:9 final size:9
Alignment explanation
Indices: 67530965--67531086 Score: 109
Period size: 9 Copynumber: 12.9 Consensus size: 9
67530955 ATGTATTAGT
67530965 TAAGTTATG
1 TAAGTTATG
67530974 TAAGTTGTTATG
1 TAA---GTTATG
*
67530986 TACGTTATG
1 TAAGTTATG
*
67530995 TGAGTTATG
1 TAAGTTATG
*
67531004 TAAATTATG
1 TAAGTTATG
67531013 TAAGTTATG
1 TAAGTTATG
*
67531022 TAAATTATG
1 TAAGTTATG
67531031 TAAGCTGTTATG
1 TAA---GTTATG
* *
67531043 TAAATTACG
1 TAAGTTATG
*
67531052 TAAGTTATA
1 TAAGTTATG
*
67531061 TGAGTTATG
1 TAAGTTATG
67531070 TAAGTTATG
1 TAAGTTATG
*
67531079 TAATTTAT
1 TAAGTTAT
67531087 TGAAGTAATA
Statistics
Matches: 90, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
9 74 0.82
12 16 0.18
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:67531041 original size:48 final size:48
Alignment explanation
Indices: 67530989--67531081 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
67530979 TGTTATGTAC
* * * *
67530989 GTTATGTGAGTTATGTAAATTATGTAAGTTATGTAAATTATGTAAGCT
1 GTTATGTAAATTACGTAAATTATATAAGTTATGTAAATTATGTAAGCT
* * *
67531037 GTTATGTAAATTACGTAAGTTATATGAGTTATGTAAGTTATGTAA
1 GTTATGTAAATTACGTAAATTATATAAGTTATGTAAATTATGTAA
67531082 TTTATTGAAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.34, C:0.02, G:0.20, T:0.43
Consensus pattern (48 bp):
GTTATGTAAATTACGTAAATTATATAAGTTATGTAAATTATGTAAGCT
Found at i:67531041 original size:57 final size:57
Alignment explanation
Indices: 67530969--67531086 Score: 155
Period size: 57 Copynumber: 2.1 Consensus size: 57
67530959 ATTAGTTAAG
* ** * * *
67530969 TTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATGTAAA
1 TTATGTAAGCTGTTATGTAAATTACGTAAGTTATATAAATTATGTAAGTTATGTAAA
* * *
67531026 TTATGTAAGCTGTTATGTAAATTACGTAAGTTATATGAGTTATGTAAGTTATGTAAT
1 TTATGTAAGCTGTTATGTAAATTACGTAAGTTATATAAATTATGTAAGTTATGTAAA
67531083 TTAT
1 TTAT
67531087 TGAAGTAATA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.32, C:0.03, G:0.19, T:0.46
Consensus pattern (57 bp):
TTATGTAAGCTGTTATGTAAATTACGTAAGTTATATAAATTATGTAAGTTATGTAAA
Found at i:67531635 original size:241 final size:241
Alignment explanation
Indices: 67531212--67531856 Score: 1209
Period size: 241 Copynumber: 2.7 Consensus size: 241
67531202 TGAATATAGT
*
67531212 AATTTTTTAAGATTCATCATACGTGGCATTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
67531277 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
*
67531342 AGGTTGGATAGAAGGTCAACTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
131 AGGTTGGATAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
*
67531407 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTA
196 ATTCAATAGTAAATGAGCTCGATAGAACTATTTTCAAGTCTTTTTA
67531453 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
*
67531518 TCGATATAAGGCAACCCGTCAGGTTTCTAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
*
67531583 AGGTTGGATAAAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
131 AGGTTGGATAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
67531648 ATTCAATAGTAAATGAGCTCGATAGAACTATTTTCAAGTCTTTTTA
196 ATTCAATAGTAAATGAGCTCGATAGAACTATTTTCAAGTCTTTTTA
67531694 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
*
67531759 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
* * *
67531824 ATGTTGGAGAGAAGGTCAGCTATTGTTTTAATT
131 AGGTTGGATAGAAGGTCAGCTATTGTTGTAATT
67531857 GCTTATAAAT
Statistics
Matches: 393, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
241 393 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (241 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
AGGTTGGATAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
ATTCAATAGTAAATGAGCTCGATAGAACTATTTTCAAGTCTTTTTA
Found at i:67534717 original size:25 final size:26
Alignment explanation
Indices: 67534683--67534747 Score: 98
Period size: 25 Copynumber: 2.5 Consensus size: 26
67534673 TGCGGAAGCG
67534683 GAGAGCGACGGCGAAAG-GACGCAGAA
1 GAGA-CGACGGCGAAAGAGACGCAGAA
*
67534709 GAGATGACGGCG-AAGAGACGCAGAA
1 GAGACGACGGCGAAAGAGACGCAGAA
67534734 GAGACGACGGCGAA
1 GAGACGACGGCGAA
67534748 CAACGATGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 3 0.09
25 27 0.77
26 5 0.14
ACGTcount: A:0.38, C:0.18, G:0.42, T:0.02
Consensus pattern (26 bp):
GAGACGACGGCGAAAGAGACGCAGAA
Found at i:67535366 original size:158 final size:157
Alignment explanation
Indices: 67535025--67535369 Score: 369
Period size: 158 Copynumber: 2.2 Consensus size: 157
67535015 TAAGCACTAA
* * *
67535025 TGTTTTTTGCGGCGTTTATTTAAAAAACGCCGCTAATCCCTATATACTCAACTAAAACGACGATG
1 TGTTTTTTGCGGCGTTTTTTTAAAAAACGCCGCAAATCCCTATATACTCAACTAAAACGACGACG
* * * * * *
67535090 TGTACTATAAACTTGAATTATTTTGTGGCGTTTTTGAAAGCACCACTAATACTCGTATATACTAA
66 TGTACCATAAACTTGAATTATGTTGCGCCGTTTTTAAAAACACCACTAATACTCGTATATACTAA
*
67535155 AACGGCGCCGTTTTCGTTAAACTAATC
131 AACGACGCCGTTTTCGTTAAACTAATC
* * * * * *
67535182 TGTATTTTGTGGCG-TTTTCTATAAAAACGCCGCAAATCCCCTATATATTGAACTAAAACGGCGA
1 TGTTTTTTGCGGCGTTTTTTTA-AAAAACGCCGCAAAT-CCCTATATACTCAACTAAAACGACGA
* * * * * *
67535246 CGCT-T-CCAGTACACTTTACTTCTGTTGCGCCGTTTTTAAAAACGCCACTAGTACTC-TATCA-
64 CG-TGTACCA-TAAACTTGAATTATGTTGCGCCGTTTTTAAAAACACCACTAATACTCGTAT-AT
* *
67535307 ATCTAAAACGACGCCGTTTTCTTTCAACT-ATAC
126 A-CTAAAACGACGCCGTTTTCGTTAAACTAAT-C
67535340 TGTTTTTTGCGGCGTTTTTTTAAAAAACGC
1 TGTTTTTTGCGGCGTTTTTTTAAAAAACGC
67535370 AACTAATCTC
Statistics
Matches: 153, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
156 5 0.03
157 34 0.22
158 107 0.70
159 7 0.05
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (157 bp):
TGTTTTTTGCGGCGTTTTTTTAAAAAACGCCGCAAATCCCTATATACTCAACTAAAACGACGACG
TGTACCATAAACTTGAATTATGTTGCGCCGTTTTTAAAAACACCACTAATACTCGTATATACTAA
AACGACGCCGTTTTCGTTAAACTAATC
Found at i:67536367 original size:14 final size:14
Alignment explanation
Indices: 67536347--67536391 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
67536337 TCCTACACCT
67536347 TAAACCCTAAACTA
1 TAAACCCTAAACTA
*
67536361 TATACCCTAAA-TCA
1 TAAACCCTAAACT-A
67536375 TAAACCCTAAACTA
1 TAAACCCTAAACTA
67536389 TAA
1 TAA
67536392 TGATAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 25 0.93
15 1 0.04
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (14 bp):
TAAACCCTAAACTA
Found at i:67536675 original size:7 final size:7
Alignment explanation
Indices: 67536663--67536782 Score: 93
Period size: 7 Copynumber: 17.1 Consensus size: 7
67536653 AAAAATGCCA
67536663 CTAAACC
1 CTAAACC
67536670 CTAAACC
1 CTAAACC
*
67536677 CTAAATC
1 CTAAACC
*
67536684 CTAAACA
1 CTAAACC
*
67536691 CTAAACT
1 CTAAACC
67536698 CTAAACC
1 CTAAACC
*
67536705 CTTAACC
1 CTAAACC
*
67536712 CTTAACC
1 CTAAACC
67536719 AC-AAACC
1 -CTAAACC
*
67536726 CTTACACC
1 C-TAAACC
*
67536734 TTAAACTC
1 CTAAAC-C
67536742 C--AACC
1 CTAAACC
*
67536747 CTAACCC
1 CTAAACC
67536754 CTAAACC
1 CTAAACC
*
67536761 CTAAATC
1 CTAAACC
* *
67536768 ATAATCC
1 CTAAACC
67536775 CTAAACC
1 CTAAACC
67536782 C
1 C
67536783 ATAATTCATC
Statistics
Matches: 88, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
5 2 0.02
6 4 0.05
7 76 0.86
8 6 0.07
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:67536851 original size:14 final size:14
Alignment explanation
Indices: 67536834--67536948 Score: 50
Period size: 14 Copynumber: 7.6 Consensus size: 14
67536824 CCTTAAACCC
67536834 TAAACCATATATCT
1 TAAACCATATATCT
* *
67536848 TAAACTATAGTTAACTT
1 TAAACCATA--TATC-T
* * * *
67536865 ATAAACCTTAAACCC
1 -TAAACCATATATCT
67536880 TAAACCATATATCT
1 TAAACCATATATCT
* *
67536894 TAAACTATAGTTAACTCA
1 TAAACCATA--T-A-TCT
* * * *
67536912 TAAACCTTAAACCC
1 TAAACCATATATCT
67536926 TAAACCATATATCT
1 TAAACCATATATCT
67536940 TAAACCATA
1 TAAACCATA
67536949 AACCATAAAC
Statistics
Matches: 71, Mismatches: 22, Indels: 16
0.65 0.20 0.15
Matches are distributed among these distances:
14 46 0.65
15 1 0.01
16 6 0.08
17 2 0.03
18 16 0.23
ACGTcount: A:0.44, C:0.23, G:0.02, T:0.31
Consensus pattern (14 bp):
TAAACCATATATCT
Found at i:67536851 original size:21 final size:21
Alignment explanation
Indices: 67536825--67536955 Score: 100
Period size: 21 Copynumber: 5.9 Consensus size: 21
67536815 ACTCCTAAAC
*
67536825 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* * * *
67536846 CTTAAACTATAGTTAACTTATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
67536871 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* * *
67536892 CTTAAACTATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
67536917 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
67536938 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
67536956 AACTATAATG
Statistics
Matches: 83, Mismatches: 19, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
21 44 0.53
22 6 0.07
24 6 0.07
25 27 0.33
ACGTcount: A:0.44, C:0.24, G:0.02, T:0.30
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:67536862 original size:46 final size:46
Alignment explanation
Indices: 67536809--67536944 Score: 254
Period size: 46 Copynumber: 3.0 Consensus size: 46
67536799 CTTCAAATAC
*
67536809 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACTA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
*
67536855 TAGTTAACTTATAAACCTTAAACCCTAAACCATATATCTTAAACTA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
67536901 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
67536945 CATAAACCAT
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 87 1.00
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.31
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
Found at i:67536924 original size:7 final size:7
Alignment explanation
Indices: 67536910--67536963 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
67536900 ATAGTTAACT
67536910 CATAAAC
1 CATAAAC
*
67536917 CTTAAAC
1 CATAAAC
*
67536924 CCTAAAC
1 CATAAAC
* *
67536931 CATATAT
1 CATAAAC
*
67536938 CTTAAAC
1 CATAAAC
67536945 CATAAAC
1 CATAAAC
67536952 CATAAAC
1 CATAAAC
*
67536959 TATAA
1 CATAA
67536964 TGATAATTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (7 bp):
CATAAAC
Found at i:67537181 original size:41 final size:41
Alignment explanation
Indices: 67537120--67537257 Score: 215
Period size: 41 Copynumber: 3.4 Consensus size: 41
67537110 GTTATATGAC
*
67537120 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
67537161 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
* * * *
67537202 TTTTAGCGGCGTTTTGCCAGAAGCGCTGCTAATGCTCT-AT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
*
67537242 TTTTTGCGGCGTTTTT
1 TTTTAGCGGCGTTTTT
67537258 TACTAAAACG
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 15 0.17
41 75 0.83
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
Found at i:67537256 original size:40 final size:41
Alignment explanation
Indices: 67537120--67537287 Score: 214
Period size: 41 Copynumber: 4.1 Consensus size: 41
67537110 GTTATATGAC
67537120 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
67537161 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
67537202 TTTTAGCGGCGTTTTGCCAGAAGCGCTGCTAATGCTCT-AT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
67537242 TTTTTGCGGCGTTTTTTACTAAAA-CGCCGCTATTGCTATGTGT
1 TTTTAGCGGCG--TTTTACCAAAAGCGCCGCTAATGCTCTG-GT
67537285 TTT
1 TTT
67537288 ACAATTTTTG
Statistics
Matches: 110, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
40 11 0.10
41 87 0.79
42 8 0.07
43 4 0.04
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:67537327 original size:12 final size:12
Alignment explanation
Indices: 67537312--67537337 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67537302 GTTTTTTGAT
67537312 AAAACGCCGCTA
1 AAAACGCCGCTA
67537324 AAAACGCCGCTA
1 AAAACGCCGCTA
67537336 AA
1 AA
67537338 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:67537419 original size:25 final size:25
Alignment explanation
Indices: 67537391--67537468 Score: 84
Period size: 25 Copynumber: 3.1 Consensus size: 25
67537381 CCATAACTCA
*
67537391 TATGAGCTTCTAGATTTACAGCTCG
1 TATGAGCTTCTCGATTTACAGCTCG
* **
67537416 TATGAACTTCTCGATTTGTAGCTCG
1 TATGAGCTTCTCGATTTACAGCTCG
* * * *
67537441 TTTGAGCTTCCCGATTCACAGCTTG
1 TATGAGCTTCTCGATTTACAGCTCG
67537466 TAT
1 TAT
67537469 AAACATACAT
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (25 bp):
TATGAGCTTCTCGATTTACAGCTCG
Found at i:67540459 original size:34 final size:34
Alignment explanation
Indices: 67540413--67540488 Score: 138
Period size: 34 Copynumber: 2.3 Consensus size: 34
67540403 TAGCCTTGCC
67540413 CTTTAAAA--AATGGTAAATATGTTTCTTAGTCT
1 CTTTAAAATTAATGGTAAATATGTTTCTTAGTCT
67540445 CTTTAAAATTAATGGTAAATATGTTTCTTAGTCT
1 CTTTAAAATTAATGGTAAATATGTTTCTTAGTCT
67540479 CTTTAAAATT
1 CTTTAAAATT
67540489 TATGAAATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
32 8 0.19
34 34 0.81
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (34 bp):
CTTTAAAATTAATGGTAAATATGTTTCTTAGTCT
Found at i:67549740 original size:17 final size:18
Alignment explanation
Indices: 67549718--67549759 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
67549708 GATACGATAT
67549718 AATAAAATGAAT-AAAG-A
1 AATAAAAT-AATCAAAGAA
67549735 AATAAAA-AATCAAAGAA
1 AATAAAATAATCAAAGAA
67549752 AATAAAAT
1 AATAAAAT
67549760 TATAAGTACC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 3 0.14
16 4 0.18
17 15 0.68
ACGTcount: A:0.74, C:0.02, G:0.07, T:0.17
Consensus pattern (18 bp):
AATAAAATAATCAAAGAA
Found at i:67550732 original size:28 final size:29
Alignment explanation
Indices: 67550677--67550732 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
67550667 TACTTCTTTC
*
67550677 ATTAAATATAATTAAACATTTTGTTCATA
1 ATTAAATATAATTAAACATTTTATTCATA
*
67550706 ATTAAATATAATT-TACATTTTATTCAT
1 ATTAAATATAATTAAACATTTTATTCAT
67550733 TTTAGTCCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (29 bp):
ATTAAATATAATTAAACATTTTATTCATA
Found at i:67559740 original size:19 final size:18
Alignment explanation
Indices: 67559705--67559756 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 18
67559695 TAAATTATTA
67559705 TTTAATAATTACAATAT-TT
1 TTTAA-AATTA-AATATGTT
67559724 GTTTAAAATTAATATATGTT
1 -TTTAAAATTAA-ATATGTT
*
67559744 TTTAATATTAAAT
1 TTTAAAATTAAAT
67559757 GAAAAGTAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 3 0.10
19 19 0.66
20 7 0.24
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (18 bp):
TTTAAAATTAAATATGTT
Found at i:67563124 original size:46 final size:46
Alignment explanation
Indices: 67563057--67563318 Score: 398
Period size: 46 Copynumber: 5.7 Consensus size: 46
67563047 GGCAACCTGA
*
67563057 GTGTAAGACCATGGTTGAAAGATACCATCGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
67563103 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
67563149 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
67563195 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
67563241 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
67563287 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
67563319 TCATGTCAAA
Statistics
Matches: 201, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 201 1.00
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.22
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:67563249 original size:138 final size:130
Alignment explanation
Indices: 67563007--67563318 Score: 426
Period size: 138 Copynumber: 2.3 Consensus size: 130
67562997 AGTGTGCTCT
*
67563007 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
***
67563072 TGAAAGATACCATCGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATCGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
67563137 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG--A-GTGTAAG
* * *
67563202 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGATACC
58 ACCATGGTTGAAAGATACCATCGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACC
67563267 ATGGCAAC
123 ATGGCAAC
* * * * * * *
67563275 ATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
67563319 TCATGTCAAA
Statistics
Matches: 160, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
130 46 0.29
135 2 0.01
137 1 0.01
138 111 0.69
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (130 bp):
CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
TGAAAGATACCATCGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:67574909 original size:24 final size:25
Alignment explanation
Indices: 67574882--67574929 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
67574872 TTTATTTATT
67574882 AAAATAATATAA-AAATTAATTACA
1 AAAATAATATAACAAATTAATTACA
*
67574906 AAAATGATATAACTAAATTAATTA
1 AAAATAATATAAC-AAATTAATTA
67574930 TAAATATTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.52
26 10 0.48
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (25 bp):
AAAATAATATAACAAATTAATTACA
Found at i:67581454 original size:24 final size:20
Alignment explanation
Indices: 67581410--67581450 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
67581400 TATTGAACTT
67581410 AAGCTTATCTAGAACAATGA
1 AAGCTTATCTAGAACAATGA
67581430 AAGCTTATCTAGAACAATGA
1 AAGCTTATCTAGAACAATGA
67581450 A
1 A
67581451 TGAATAACGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (20 bp):
AAGCTTATCTAGAACAATGA
Found at i:67600644 original size:20 final size:19
Alignment explanation
Indices: 67600602--67600644 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
67600592 TAATAGTGTT
67600602 ATAATTTTATTTATTAACTA
1 ATAATTTTATTTATTAAC-A
67600622 ATAATTTTAATATTATTAA-A
1 ATAATTTT-AT-TTATTAACA
67600642 ATA
1 ATA
67600645 TTCATCATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 12 0.57
21 2 0.10
22 7 0.33
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
ATAATTTTATTTATTAACA
Found at i:67601033 original size:21 final size:22
Alignment explanation
Indices: 67601009--67601049 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
67600999 TATATTACTA
67601009 ATTTTACAATTT-TAAATATGT
1 ATTTTACAATTTATAAATATGT
**
67601030 ATTTTAGTATTTATAAATAT
1 ATTTTACAATTTATAAATAT
67601050 TCATCATGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (22 bp):
ATTTTACAATTTATAAATATGT
Found at i:67601116 original size:17 final size:20
Alignment explanation
Indices: 67601096--67601140 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
67601086 ACTATTTAAT
67601096 TAAATAA-AT-TTA-TTTTA
1 TAAATAATATATTAGTTTTA
*
67601113 TAAAATAATGTATTAGTTTTA
1 T-AAATAATATATTAGTTTTA
67601134 TAAATAA
1 TAAATAA
67601141 GAATTCTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
17 1 0.04
18 6 0.26
19 1 0.04
20 9 0.39
21 6 0.26
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (20 bp):
TAAATAATATATTAGTTTTA
Found at i:67602827 original size:18 final size:20
Alignment explanation
Indices: 67602804--67602844 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
67602794 GAAATATTTA
*
67602804 TTTTGATGT-TTTTA-GTAT
1 TTTTGATGTATTATATGTAT
67602822 TTTTGATGTATTATATGTAT
1 TTTTGATGTATTATATGTAT
67602842 TTT
1 TTT
67602845 AAAATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 4 0.20
20 7 0.35
ACGTcount: A:0.20, C:0.00, G:0.15, T:0.66
Consensus pattern (20 bp):
TTTTGATGTATTATATGTAT
Found at i:67602875 original size:12 final size:12
Alignment explanation
Indices: 67602845--67602877 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
67602835 TATGTATTTT
67602845 AAAATT-ATATA
1 AAAATTAATATA
67602856 AAAA-TAATATA
1 AAAATTAATATA
67602867 AAAATTAATAT
1 AAAATTAATAT
67602878 TGGTAGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:67618840 original size:6 final size:6
Alignment explanation
Indices: 67618819--67618852 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
67618809 AACCCTAATA
*
67618819 ACCTAT A-CTAT GCCTAT ACCTAT ACCTAT ACCTA
1 ACCTAT ACCTAT ACCTAT ACCTAT ACCTAT ACCTA
67618853 ACCCAGTGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.32, C:0.32, G:0.03, T:0.32
Consensus pattern (6 bp):
ACCTAT
Found at i:67620950 original size:13 final size:13
Alignment explanation
Indices: 67620932--67620963 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
67620922 GAATTCAATC
67620932 ATGTTTAAGATTA
1 ATGTTTAAGATTA
67620945 ATGTTTAAGATTA
1 ATGTTTAAGATTA
67620958 ATGTTT
1 ATGTTT
67620964 GTTTCTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (13 bp):
ATGTTTAAGATTA
Found at i:67621063 original size:22 final size:21
Alignment explanation
Indices: 67621020--67621067 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
67621010 TTAGGGTTTT
67621020 ATAATTTTATAAAAATATTTA
1 ATAATTTTATAAAAATATTTA
* *
67621041 ACTAATTTT-TAGAATTATATTA
1 A-TAATTTTATAAAAATAT-TTA
67621063 ATAAT
1 ATAAT
67621068 AAAATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
ATAATTTTATAAAAATATTTA
Found at i:67626959 original size:80 final size:80
Alignment explanation
Indices: 67626826--67626985 Score: 320
Period size: 80 Copynumber: 2.0 Consensus size: 80
67626816 CACAACCATA
67626826 TCAGAAGTGTAATTGCTAAAGCCAACGCACTAATGCCTTCCTCTTCACTATTGGCAGCTGAAGCT
1 TCAGAAGTGTAATTGCTAAAGCCAACGCACTAATGCCTTCCTCTTCACTATTGGCAGCTGAAGCT
67626891 TATGCATTGAGGTTT
66 TATGCATTGAGGTTT
67626906 TCAGAAGTGTAATTGCTAAAGCCAACGCACTAATGCCTTCCTCTTCACTATTGGCAGCTGAAGCT
1 TCAGAAGTGTAATTGCTAAAGCCAACGCACTAATGCCTTCCTCTTCACTATTGGCAGCTGAAGCT
67626971 TATGCATTGAGGTTT
66 TATGCATTGAGGTTT
67626986 GGCTCCAAGT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (80 bp):
TCAGAAGTGTAATTGCTAAAGCCAACGCACTAATGCCTTCCTCTTCACTATTGGCAGCTGAAGCT
TATGCATTGAGGTTT
Found at i:67630955 original size:34 final size:34
Alignment explanation
Indices: 67630917--67631012 Score: 83
Period size: 34 Copynumber: 2.8 Consensus size: 34
67630907 GAAGATATAC
*
67630917 ATACATAAAATAATATGAAATCAATAATACATAT
1 ATACATAAAATAATATGAAATCAATAATAAATAT
* *
67630951 ATACACATAAA-AA-ATGAAA--AATTAAAGGAAATAT
1 ATACATA-AAATAATATGAAATCAA-T-AA-TAAATAT
* *
67630985 TTACATAAAATAATAGGAAATCAATAAT
1 ATACATAAAATAATATGAAATCAATAAT
67631013 GTATACTTAG
Statistics
Matches: 47, Mismatches: 7, Indels: 16
0.67 0.10 0.23
Matches are distributed among these distances:
31 2 0.04
32 1 0.02
33 11 0.23
34 20 0.43
35 10 0.21
36 1 0.02
37 2 0.04
ACGTcount: A:0.60, C:0.07, G:0.06, T:0.26
Consensus pattern (34 bp):
ATACATAAAATAATATGAAATCAATAATAAATAT
Found at i:67632671 original size:133 final size:133
Alignment explanation
Indices: 67632369--67632660 Score: 422
Period size: 133 Copynumber: 2.2 Consensus size: 133
67632359 TTCGATCTGT
* * * * * *
67632369 TCCATAGTCGATACAGGGAAATAAGATCTGTTATTTTCAGTTTGTTTCCTTGCTACCTCAGGAAG
1 TCCATAGCCGATACATGGAGATAAGATCTGTTATTTTCAGTCTGCTTCCTTACTACCTCAGGAAG
* * * *
67632434 ATAAGACTTGCATATTGAGCCTGCTCCACTACAACTTCAGAGAGATAATGCTAGTGGCTAAAATC
66 ATAAGACTTGCATATTGAACCTACTCCACTACAACTTCAGAGAGATAAGGCTAGTGGCTAAAACC
67632499 TGC
131 TGC
* * **
67632502 TCCATAGCCGATACATGAAGATAAGATCTATTATTTTCAGTCTGCTTCCTTACTACCTTGGGAAG
1 TCCATAGCCGATACATGGAGATAAGATCTGTTATTTTCAGTCTGCTTCCTTACTACCTCAGGAAG
* * * *
67632567 ATAAGACTTGCATATTGAACCTACTCCACTTCAACTTTAGGGAGATAAGGCTGGTGGCTAAAACC
66 ATAAGACTTGCATATTGAACCTACTCCACTACAACTTCAGAGAGATAAGGCTAGTGGCTAAAACC
67632632 TGC
131 TGC
67632635 TCCATAGCCGATACATGGAGATAAGA
1 TCCATAGCCGATACATGGAGATAAGA
67632661 CTCGCCATTT
Statistics
Matches: 140, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
133 140 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (133 bp):
TCCATAGCCGATACATGGAGATAAGATCTGTTATTTTCAGTCTGCTTCCTTACTACCTCAGGAAG
ATAAGACTTGCATATTGAACCTACTCCACTACAACTTCAGAGAGATAAGGCTAGTGGCTAAAACC
TGC
Found at i:67632755 original size:177 final size:177
Alignment explanation
Indices: 67632496--67633072 Score: 775
Period size: 177 Copynumber: 3.3 Consensus size: 177
67632486 AGTGGCTAAA
* * * *
67632496 ATCTGCTCCATAGCCGATACATGAAGATAAGATCTATTATTTTCAGTCTGCTTCCTTACTACCTT
1 ATCTACTCCATAGCCGATACATGGAGATAAGATCTATAATTTTCAGTCTGCTTCC-TAC-AACTT
* * *
67632561 -GGGAAGATAAGACTTGCATATTGAACCTACTCCACTTCAACTTTAGGGAGATAAGGCTGGTGGC
64 CAGGAAGATAAGACTTGCATATTGAACCTGCTCCACTTCAACTTAAGGGAGATAAGGCTGGTGGC
* *
67632625 TAAAACCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
129 TAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCG
* *
67632674 ATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTACAACTTCA
1 ATCTACTCCATAGCCGATACATGGAGATAAGATCTATAATTTTCAGTCTGCTTCCTACAACTTCA
* * *
67632739 GGAAGATAAGACTTGCATATTGAGCCTGCTCTACTGCAACTTCAA-GGAGATAAGGCTGGTGGCT
66 GGAAGATAAGACTTGCATATTGAACCTGCTCCACTTCAACTT-AAGGGAGATAAGGCTGGTGGCT
*
67632803 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCG
130 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCG
* * * * *
67632851 ATCTGA-TCCATAGCCGATACATAGAGATAAGATTTGTAATTTTCAGTCTGCTTCTTGCAACTTC
1 ATCT-ACTCCATAGCCGATACATGGAGATAAGATCTATAATTTTCAGTCTGCTTCCTACAACTTC
* * * * * * * *
67632915 AGGAAGATAAGACTTGTATCTTCAACCTGCT-CTCTTGCTACCTAAGAGAGATAAAGCTGGTGGC
65 AGGAAGATAAGACTTGCATATTGAACCTGCTCCACTT-CAACTTAAGGGAGATAAGGCTGGTGGC
*
67632979 TAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTCG
129 TAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCG
** ** *
67633028 ATCTGTTCCATAGTTGATACATGGAGATAAGTTCTATAATTTTCA
1 ATCTACTCCATAGCCGATACATGGAGATAAGATCTATAATTTTCA
67633073 TCAATATCGC
Statistics
Matches: 353, Mismatches: 40, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
176 8 0.02
177 293 0.83
178 52 0.15
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (177 bp):
ATCTACTCCATAGCCGATACATGGAGATAAGATCTATAATTTTCAGTCTGCTTCCTACAACTTCA
GGAAGATAAGACTTGCATATTGAACCTGCTCCACTTCAACTTAAGGGAGATAAGGCTGGTGGCTA
AAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCG
Found at i:67632925 original size:310 final size:311
Alignment explanation
Indices: 67632270--67632862 Score: 768
Period size: 311 Copynumber: 1.9 Consensus size: 311
67632260 GGTTTGTGAC
* * * *
67632270 TTCAACCTGCTCCAC-TGCAACTTCAGGGAGACAAAGCTGGTGGCTAAAATATGCTCCATAGCCG
1 TTCAACCTACT-CACTTGCAACTTCAGGGAGATAAGGCTGGTGGCTAAAACATGCTCCATAGCCG
** *
67632334 ATACATGGAGATAAGACTCGCCACCTTCGATCTGTTCCATAGTCGATACAGGGAAATAAGATCTG
65 ATACATGGAGATAAGACTCGCCACCTTCGATCTACTCCATAGCCGATACAGGGAAATAAGATCTG
* * ** * *
67632399 TTATTTTCAGTTTGTTTCCTTGCTACCTCAGGAAGATAAGACTTGCATATTGAGCCTGCTCCACT
130 TAATTTTCAGTCTACTTCCTTACAACCTCAGGAAGATAAGACTTGCATATTGAGCCTGCTCCACT
* *
67632464 ACAACTTCAGAGAGATAATGCTAGTGGCTAAAATCTGCTCCATAGCCGATACATGAAGATAAGAT
195 ACAACTTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGAAGATAAGAT
** * * * * *
67632529 CTATTATTTTCAGTCTGCTTCCTTACTACCTTGGGAAGATAAGACTTGCATA
260 CTACCATTTTCAGTCTGCATCCATACTACCATGAGAAGATAAGACTTGAATA
* * *
67632581 TTGAACCTACTCCACTT-CAACTTTAGGGAGATAAGGCTGGTGGCTAAAACCTGCTCCATAGCCG
1 TTCAACCTACT-CACTTGCAACTTCAGGGAGATAAGGCTGGTGGCTAAAACATGCTCCATAGCCG
** * * *
67632645 ATACATGGAGATAAGACTCGCCATTTTTGATCTACTCCATAGCCGATACATGGAGATAAGATCTG
65 ATACATGGAGATAAGACTCGCCACCTTCGATCTACTCCATAGCCGATACAGGGAAATAAGATCTG
* *
67632710 TAATTTTCAGTCTACTTCC-TACAACTTCAGGAAGATAAGACTTGCATATTGAGCCTGCTCTACT
130 TAATTTTCAGTCTACTTCCTTACAACCTCAGGAAGATAAGACTTGCATATTGAGCCTGCTCCACT
* * *
67632774 GCAACTTCA-AGGAGATAAGGCTGGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGA
195 ACAACTTCAGA-GAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGAAGATAAGA
*
67632838 -CTCGCCATTTTC-GATCTG-ATCCATA
259 TCT-ACCATTTTCAG-TCTGCATCCATA
67632863 GCCGATACAT
Statistics
Matches: 245, Mismatches: 33, Indels: 10
0.85 0.11 0.03
Matches are distributed among these distances:
309 9 0.04
310 108 0.44
311 127 0.52
312 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (311 bp):
TTCAACCTACTCACTTGCAACTTCAGGGAGATAAGGCTGGTGGCTAAAACATGCTCCATAGCCGA
TACATGGAGATAAGACTCGCCACCTTCGATCTACTCCATAGCCGATACAGGGAAATAAGATCTGT
AATTTTCAGTCTACTTCCTTACAACCTCAGGAAGATAAGACTTGCATATTGAGCCTGCTCCACTA
CAACTTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGAAGATAAGATC
TACCATTTTCAGTCTGCATCCATACTACCATGAGAAGATAAGACTTGAATA
Found at i:67637734 original size:21 final size:21
Alignment explanation
Indices: 67637709--67637754 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
67637699 GAAATGCAAG
67637709 AAAAGAAAATTTACTCA-AGAT
1 AAAAGAAAATTTACTCAGA-AT
* *
67637730 AAAAGAATATTTGCTCAGAAT
1 AAAAGAAAATTTACTCAGAAT
67637751 AAAA
1 AAAA
67637755 CATGAAAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.11, T:0.24
Consensus pattern (21 bp):
AAAAGAAAATTTACTCAGAAT
Found at i:67642931 original size:47 final size:47
Alignment explanation
Indices: 67642814--67643002 Score: 164
Period size: 47 Copynumber: 3.9 Consensus size: 47
67642804 TGCAAATAGT
* * ** * * *
67642814 CACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTACAC-GGAT
1 CACATATCAC--ACCGATGCCATATCCCAGATATGGTCTTATACAGAAG
* *
67642862 CACATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACCGATGCCATATCCCAGATATGGTCTTATACAGAAG
* * **
67642909 CACATATCACACCGATGTCATATCCCGGATATGGTCTTATATGGAAG
1 CACATATCACACCGATGCCATATCCCAGATATGGTCTTATACAGAAG
* * *
67642956 CACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATAC
1 CACATATCACA-----CCGATGCCATATCCCAGATATGGTCTTATAC
67643003 GAAAATCACA
Statistics
Matches: 115, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 26 0.23
47 54 0.47
48 10 0.09
52 25 0.22
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATATCACACCGATGCCATATCCCAGATATGGTCTTATACAGAAG
Found at i:67644627 original size:12 final size:12
Alignment explanation
Indices: 67644610--67644661 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
67644600 TTAGCTAATC
67644610 GCTCTTGCATTT
1 GCTCTTGCATTT
*
67644622 GCTCTTGCATCT
1 GCTCTTGCATTT
* *
67644634 GTTCCTGCATTT
1 GCTCTTGCATTT
*
67644646 -CTTTTTGCATTT
1 GC-TCTTGCATTT
67644658 GCTC
1 GCTC
67644662 CAATTTTTCT
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
12 29 0.97
13 1 0.03
ACGTcount: A:0.08, C:0.27, G:0.15, T:0.50
Consensus pattern (12 bp):
GCTCTTGCATTT
Found at i:67646535 original size:22 final size:23
Alignment explanation
Indices: 67646509--67646554 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
67646499 CAACCAAACC
67646509 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
67646531 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
67646554 A
1 A
67646555 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:67646560 original size:23 final size:23
Alignment explanation
Indices: 67646516--67646560 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
67646506 ACCAATTCAA
*
67646516 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
67646539 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
67646561 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:67655810 original size:34 final size:34
Alignment explanation
Indices: 67655772--67655880 Score: 82
Period size: 34 Copynumber: 3.2 Consensus size: 34
67655762 TTAGAAGAAG
67655772 ATATACATACATAAAATAGTATGAAATCAATAAT
1 ATATACATACATAAAATAGTATGAAATCAATAAT
* *
67655806 ATATATATACACATAAAA-AG-ATGAAA--AATTAAAGG
1 ATATACAT--ACATAAAATAGTATGAAATCAA-T-AA-T
* ** * *
67655841 AAATATTTACATAAAATAATAGGAAATCAATAAT
1 ATATACATACATAAAATAGTATGAAATCAATAAT
67655875 ATATAC
1 ATATAC
67655881 TTAGAGTAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
32 2 0.04
33 9 0.16
34 20 0.35
35 15 0.26
36 9 0.16
37 2 0.04
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.28
Consensus pattern (34 bp):
ATATACATACATAAAATAGTATGAAATCAATAAT
Found at i:67659962 original size:82 final size:81
Alignment explanation
Indices: 67659812--67659971 Score: 193
Period size: 82 Copynumber: 2.0 Consensus size: 81
67659802 TAAAAAAAAA
* * * **
67659812 TTCAATTCAATCCTCTTATAAATAGAGAGTATAAATTAATATATAGTGAAATTGAACTTTGTTCC
1 TTCAATTCAATACTCTTATAAATAGAAAGTATAAATTAATATATAGTAAAATTGAACTTTACTCC
67659877 CCTAAAAATGAAAAATT
66 CCT-AAAATGAAAAATT
*
67659894 TTCAATTCAATACTCTTATAAATAAAGAAATTATAAATT-A-ATATAGTAAAATT-ACACTTTAA
1 TTCAATTCAATACTCTTATAAAT--AGAAAGTATAAATTAATATATAGTAAAATTGA-ACTTT-A
67659956 CT-CCCTAAAATGAAAA
62 CTCCCCTAAAATGAAAA
67659972 CAAGTATGTT
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
81 11 0.16
82 43 0.63
83 2 0.03
84 12 0.18
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.34
Consensus pattern (81 bp):
TTCAATTCAATACTCTTATAAATAGAAAGTATAAATTAATATATAGTAAAATTGAACTTTACTCC
CCTAAAATGAAAAATT
Found at i:67660640 original size:24 final size:25
Alignment explanation
Indices: 67660608--67660654 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
67660598 TGGAATGGAT
67660608 TTTACTTTTTAAA-ATTCTTTTACAA
1 TTTACTTTTTAAATATT-TTTTACAA
67660633 TTTA-TTTTTAAATATTTTTTAC
1 TTTACTTTTTAAATATTTTTTAC
67660655 TAATAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.62
Consensus pattern (25 bp):
TTTACTTTTTAAATATTTTTTACAA
Found at i:67660776 original size:14 final size:14
Alignment explanation
Indices: 67660757--67660799 Score: 59
Period size: 15 Copynumber: 3.0 Consensus size: 14
67660747 TCTAATTATA
67660757 CATTATATGGATTT
1 CATTATATGGATTT
*
67660771 CATTATAATAGATTT
1 CATTAT-ATGGATTT
*
67660786 CATTATCTGGATTT
1 CATTATATGGATTT
67660800 TATATAAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.30, C:0.09, G:0.12, T:0.49
Consensus pattern (14 bp):
CATTATATGGATTT
Found at i:67661622 original size:10 final size:10
Alignment explanation
Indices: 67661593--67661652 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
67661583 TAATTTTAGG
67661593 ATTTAT-TTT
1 ATTTATCTTT
*
67661602 CATTCATCTTT
1 -ATTTATCTTT
67661613 ATTTATCTTT
1 ATTTATCTTT
*
67661623 AATTATCTTT
1 ATTTATCTTT
67661633 ATTTAT-TTGT
1 ATTTATCTT-T
67661643 ATTTATCTTT
1 ATTTATCTTT
67661653 TAGAATTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 2 0.05
10 36 0.84
11 5 0.12
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:67663549 original size:22 final size:22
Alignment explanation
Indices: 67663521--67663564 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
67663511 AAAGAAAGAT
67663521 GAAGAATCATCATCATTTTTCC
1 GAAGAATCATCATCATTTTTCC
67663543 GAAGAATCATCATCATTTTTCC
1 GAAGAATCATCATCATTTTTCC
67663565 CATGCACCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (22 bp):
GAAGAATCATCATCATTTTTCC
Found at i:67666737 original size:28 final size:28
Alignment explanation
Indices: 67666675--67666742 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
67666665 TAGATGTACT
* *
67666675 ATTATACCCCTATGTATGCAAAATTATC
1 ATTATACCCCTATGTATGCAAAATGACC
*
67666703 ATAATACCCCTATG-ATTGCAAAATGACC
1 ATTATACCCCTATGTA-TGCAAAATGACC
*
67666731 TTTATACCCCTA
1 ATTATACCCCTA
67666743 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.32
Consensus pattern (28 bp):
ATTATACCCCTATGTATGCAAAATGACC
Found at i:67666908 original size:27 final size:27
Alignment explanation
Indices: 67666849--67666935 Score: 104
Period size: 28 Copynumber: 3.1 Consensus size: 27
67666839 AGGAAGTGTC
67666849 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
67666877 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
67666904 TTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
67666933 CTG
1 CTG
67666936 ATAACTCTGT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
27 22 0.44
28 25 0.50
29 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:67670809 original size:5 final size:5
Alignment explanation
Indices: 67670794--67670846 Score: 67
Period size: 5 Copynumber: 10.8 Consensus size: 5
67670784 TAACCCAATT
67670794 TTTTA -TTTA TTTTA TTTTA TTTTA TTTTA CTATTTA --TTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -T-TTTA TTTTA TTTTA TTTTA
67670843 TTTT
1 TTTT
67670847 TTTGGATGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
3 3 0.07
4 4 0.09
5 31 0.72
6 1 0.02
7 4 0.09
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:67672431 original size:10 final size:10
Alignment explanation
Indices: 67672416--67672465 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
67672406 TAATCTTAGG
67672416 ATTTAT-TTT
1 ATTTATCTTT
67672425 CATTTATCTTT
1 -ATTTATCTTT
*
67672436 AATTATCTTT
1 ATTTATCTTT
67672446 ATTTAT-TTGT
1 ATTTATCTT-T
*
67672456 ATTTTTCTTT
1 ATTTATCTTT
67672466 TAAAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:67680375 original size:42 final size:42
Alignment explanation
Indices: 67680302--67680441 Score: 154
Period size: 42 Copynumber: 3.3 Consensus size: 42
67680292 CATGTAGTAT
* * * * *
67680302 AATTCGTATTCTATTTTGATTTTTTTTTTGAAATAATAGTTC
1 AATTAGTATTATATTTTGATTATTTTATTGAAATAATAGTTA
* *
67680344 AATTAGTATTATATTTTGAATCTTTTATTGAAATAATAGTTA
1 AATTAGTATTATATTTTGATTATTTTATTGAAATAATAGTTA
* *
67680386 AATTAGTATTTTATTTTTATTTTTATTTTATTGAAATAATAGTTA
1 AATTAGTATTATATTTTGA---TTATTTTATTGAAATAATAGTTA
* *
67680431 TATAAGTATTA
1 AATTAGTATTA
67680442 AATGAAAAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
42 53 0.65
45 29 0.35
ACGTcount: A:0.34, C:0.03, G:0.09, T:0.55
Consensus pattern (42 bp):
AATTAGTATTATATTTTGATTATTTTATTGAAATAATAGTTA
Found at i:67684161 original size:18 final size:18
Alignment explanation
Indices: 67684138--67684199 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
67684128 TGTATTAAAT
67684138 AAATATTATAATAAGTAA
1 AAATATTATAATAAGTAA
* *
67684156 AAATATGTAATGTATTAA-TAT
1 AAATAT-T-A--TAATAAGTAA
*
67684177 AAATATTATTATAAGTAA
1 AAATATTATAATAAGTAA
67684195 AAATA
1 AAATA
67684200 AGAGTTGAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 10
0.69 0.10 0.20
Matches are distributed among these distances:
17 4 0.12
18 13 0.38
19 2 0.06
20 2 0.06
21 8 0.24
22 5 0.15
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.37
Consensus pattern (18 bp):
AAATATTATAATAAGTAA
Found at i:67684660 original size:12 final size:12
Alignment explanation
Indices: 67684643--67684668 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67684633 TAAATTTTAT
67684643 AAAAATAATATA
1 AAAAATAATATA
67684655 AAAAATAATATA
1 AAAAATAATATA
67684667 AA
1 AA
67684669 GTACTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAATAATATA
Found at i:67687729 original size:17 final size:18
Alignment explanation
Indices: 67687702--67687736 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
67687692 TTTTTTAAAG
67687702 TTATGAAAAAAAAATTTA
1 TTATGAAAAAAAAATTTA
*
67687720 TTAT-AAAAAATAATTTA
1 TTATGAAAAAAAAATTTA
67687737 CATGTTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (18 bp):
TTATGAAAAAAAAATTTA
Found at i:67687735 original size:43 final size:44
Alignment explanation
Indices: 67687622--67687736 Score: 103
Period size: 43 Copynumber: 2.6 Consensus size: 44
67687612 ATAAATCATT
**
67687622 AAAAAATTATATTATAAAATAATTGTTTATTTTATAAAGTTATAAA
1 AAAAAATT-TATTATAAAA-AATAATTTATTTTATAAAGTTATAAA
* * ***
67687668 AATATA-TTATT-TAAATCTTAAATTT-TTTT-TAAAGTTATGAAA
1 AAAAAATTTATTATAAAAAAT-AATTTATTTTATAAAGTTAT-AAA
67687710 AAAAAATTTATTATAAAAAATAATTTA
1 AAAAAATTTATTATAAAAAATAATTTA
67687737 CATGTTATAA
Statistics
Matches: 52, Mismatches: 12, Indels: 12
0.68 0.16 0.16
Matches are distributed among these distances:
41 9 0.17
42 12 0.23
43 17 0.33
44 9 0.17
45 1 0.02
46 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.44
Consensus pattern (44 bp):
AAAAAATTTATTATAAAAAATAATTTATTTTATAAAGTTATAAA
Found at i:67689341 original size:34 final size:35
Alignment explanation
Indices: 67689291--67689361 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 35
67689281 CATTTAAATC
67689291 TTAAAAAATTTCTAAAGTTAT-AGTAAAAAA-ATTA
1 TTAAAAAATTTCTAAAGTTATGA-TAAAAAATATTA
67689325 TTAAAAATATTT-TAAAGTTATGATAAAAAATATTA
1 TTAAAAA-ATTTCTAAAGTTATGATAAAAAATATTA
67689360 TT
1 TT
67689362 TATAAGGAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
34 23 0.68
35 11 0.32
ACGTcount: A:0.54, C:0.01, G:0.06, T:0.39
Consensus pattern (35 bp):
TTAAAAAATTTCTAAAGTTATGATAAAAAATATTA
Found at i:67690274 original size:2 final size:2
Alignment explanation
Indices: 67690267--67690293 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67690257 ATGAGGGAAT
67690267 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
67690294 GTTAAGTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67694814 original size:96 final size:96
Alignment explanation
Indices: 67694650--67694833 Score: 359
Period size: 96 Copynumber: 1.9 Consensus size: 96
67694640 CATTGATCAT
*
67694650 CCTATTAATTCATTTCGCCTTTGCAAAGCCATTTAGTTCGGGTGCCCTCTCTCATGAGAATTGGT
1 CCTATTAATTCATTTCGCCTTTGCAAAGCCATTTAGTTCGGGTGCCCTCTCTCATGAGAATTGAT
67694715 CAACCTGGGATAAGATCCACCATTTGGTCAC
66 CAACCTGGGATAAGATCCACCATTTGGTCAC
67694746 CCTATTAATTCATTTCGCCTTTGCAAAGCCATTTAGTTCGGGTGCCCTCTCTCATGAGAATTGAT
1 CCTATTAATTCATTTCGCCTTTGCAAAGCCATTTAGTTCGGGTGCCCTCTCTCATGAGAATTGAT
67694811 CAACCTGGGATAAGATCCACCAT
66 CAACCTGGGATAAGATCCACCAT
67694834 AGATAGCAGA
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 87 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (96 bp):
CCTATTAATTCATTTCGCCTTTGCAAAGCCATTTAGTTCGGGTGCCCTCTCTCATGAGAATTGAT
CAACCTGGGATAAGATCCACCATTTGGTCAC
Found at i:67700271 original size:42 final size:41
Alignment explanation
Indices: 67700212--67700334 Score: 147
Period size: 42 Copynumber: 2.9 Consensus size: 41
67700202 ATTCTTGAAC
* *
67700212 ATTAGCTTGCTCACAAACGGGTAGCAAGGAAACATGAAAAAT
1 ATTAGCTTGCTAACAAACGGG-AGCAAGGAAGCATGAAAAAT
* * *
67700254 ATTAGCTTGCTAACAAACGTGCAACAAAGAAGCATGAAAAAT
1 ATTAGCTTGCTAACAAACG-GGAGCAAGGAAGCATGAAAAAT
* * *
67700296 ATCAGCTTACTGACAAACGTGGAGCAAGGAAGCATGAAA
1 ATTAGCTTGCTAACAAACG-GGAGCAAGGAAGCATGAAA
67700335 CAATCTGCTC
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
42 68 0.99
43 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.18
Consensus pattern (41 bp):
ATTAGCTTGCTAACAAACGGGAGCAAGGAAGCATGAAAAAT
Found at i:67709837 original size:26 final size:27
Alignment explanation
Indices: 67709800--67709852 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
67709790 AAGATGATAT
*
67709800 GAAAAAGTAATTTTTTTATTAATTAAA
1 GAAAAAGTAATTTTTGTATTAATTAAA
*
67709827 GAAAAA-TAATTTTTGTATTATTTAAA
1 GAAAAAGTAATTTTTGTATTAATTAAA
67709853 ATTAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (27 bp):
GAAAAAGTAATTTTTGTATTAATTAAA
Found at i:67710017 original size:31 final size:31
Alignment explanation
Indices: 67709982--67710045 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
67709972 TAGCATGATA
67709982 GGTTTTTTACTAAAATAACGTTAACCATATT
1 GGTTTTTTACTAAAATAACGTTAACCATATT
*
67710013 GGTTTTTTACTAAAATAACGTTAATCATATT
1 GGTTTTTTACTAAAATAACGTTAACCATATT
67710044 GG
1 GG
67710046 ATTCTTGGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.42
Consensus pattern (31 bp):
GGTTTTTTACTAAAATAACGTTAACCATATT
Found at i:67716529 original size:53 final size:53
Alignment explanation
Indices: 67716471--67716581 Score: 195
Period size: 53 Copynumber: 2.1 Consensus size: 53
67716461 AACATAGAAA
*
67716471 ATTAAACAAAGTAAGCTATATAGCTTAGTAAGCTCGTATAAATTATACTTAAT
1 ATTAAACAAAGTAAGCTATATAGCTTAGTAAGCTCATATAAATTATACTTAAT
*
67716524 ATTAAACAAAGTAAGCTATATAGCTTAGTAAGCTCATATGAATTATACTTAAT
1 ATTAAACAAAGTAAGCTATATAGCTTAGTAAGCTCATATAAATTATACTTAAT
*
67716577 CTTAA
1 ATTAA
67716582 CATAGATATA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (53 bp):
ATTAAACAAAGTAAGCTATATAGCTTAGTAAGCTCATATAAATTATACTTAAT
Found at i:67717508 original size:22 final size:20
Alignment explanation
Indices: 67717473--67717512 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
67717463 CCATATTTCT
67717473 CACTTATTTCACATTTTAAC
1 CACTTATTTCACATTTTAAC
67717493 CACTATATTTACACATTTTA
1 CACT-TATTT-CACATTTTA
67717513 CAATTTAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 5 0.28
22 9 0.50
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.45
Consensus pattern (20 bp):
CACTTATTTCACATTTTAAC
Found at i:67717889 original size:23 final size:23
Alignment explanation
Indices: 67717844--67717889 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
67717834 GACACCATGT
* *
67717844 TTTTATTATTTTAACTTAATTTA
1 TTTTATAATTTTAACTAAATTTA
67717867 TTTTATAATTTT-ACTAAACTTTA
1 TTTTATAATTTTAACTAAA-TTTA
67717890 CTTAAACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTTATAATTTTAACTAAATTTA
Found at i:67741470 original size:1 final size:1
Alignment explanation
Indices: 67741464--67741488 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
67741454 TGGGAAACTT
67741464 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
67741489 CACTTAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:67748848 original size:26 final size:25
Alignment explanation
Indices: 67748819--67748875 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
67748809 ATTATGCTCA
*
67748819 AATTTTAAATTTAATTTTTATACATT
1 AATTTTAAATTTAA-TTTGATACATT
** *
67748845 AATTTTTCATTTAATTTGATACCTT
1 AATTTTAAATTTAATTTGATACATT
67748870 AATTTT
1 AATTTT
67748876 TACAATGTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (25 bp):
AATTTTAAATTTAATTTGATACATT
Found at i:67748876 original size:26 final size:26
Alignment explanation
Indices: 67748827--67748876 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
67748817 CAAATTTTAA
*
67748827 ATTTAATTTTTATACATTAATTTTTC
1 ATTTAATTTTGATACATTAATTTTTC
*
67748853 ATTTAA-TTTGATACCTTAATTTTT
1 ATTTAATTTTGATACATTAATTTTT
67748877 ACAATGTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (26 bp):
ATTTAATTTTGATACATTAATTTTTC
Found at i:67750501 original size:32 final size:32
Alignment explanation
Indices: 67750465--67750533 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
67750455 GATATAGAGA
67750465 TTTTAATTATGTGGACCAACCTCTGTTTTTAG
1 TTTTAATTATGTGGACCAACCTCTGTTTTTAG
67750497 TTTTAATTATGTGGACCAACCTCTGTTTTTAG
1 TTTTAATTATGTGGACCAACCTCTGTTTTTAG
67750529 TTTTA
1 TTTTA
67750534 GTATGCCTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.22, C:0.14, G:0.14, T:0.49
Consensus pattern (32 bp):
TTTTAATTATGTGGACCAACCTCTGTTTTTAG
Found at i:67763348 original size:46 final size:44
Alignment explanation
Indices: 67763244--67763351 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
67763234 TGTCTTTGAC
** * * *
67763244 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
67763288 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
67763334 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
67763352 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:67765430 original size:18 final size:18
Alignment explanation
Indices: 67765398--67765531 Score: 78
Period size: 18 Copynumber: 7.3 Consensus size: 18
67765388 TTGATTAGAT
67765398 AAAAATTGTTAAAATTATTA
1 AAAAATTG-T-AAATTATTA
*
67765418 AAATATTGTAAA-TATT-
1 AAAAATTGTAAATTATTA
* **
67765434 ATAAATTGTTTAAAACATTA
1 AAAAATTG--TAAATTATTA
* * *
67765454 AAAATTTGTAAA-AAATA
1 AAAAATTGTAAATTATTA
*
67765471 GAAAAATTGTAAATTTTTTA
1 -AAAAATTGTAAA-TTATTA
* *
67765491 AAGAA-CGTAAAGTTATTA
1 AAAAATTGTAAA-TTATTA
*
67765509 AAAAATTTTAAATTATTA
1 AAAAATTGTAAATTATTA
67765527 AAAAA
1 AAAAA
67765532 GTGTTTTTAG
Statistics
Matches: 87, Mismatches: 19, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
16 6 0.07
17 7 0.08
18 47 0.54
19 12 0.14
20 15 0.17
ACGTcount: A:0.54, C:0.01, G:0.07, T:0.37
Consensus pattern (18 bp):
AAAAATTGTAAATTATTA
Found at i:67765438 original size:19 final size:19
Alignment explanation
Indices: 67765396--67765484 Score: 55
Period size: 19 Copynumber: 4.8 Consensus size: 19
67765386 CATTGATTAG
67765396 ATAAAA-ATTGTTAAA-ATT
1 ATAAAATATTG-TAAATATT
67765414 ATTAAAATATTGTAAATATT
1 A-TAAAATATTGTAAATATT
* * *
67765434 ATAAATTGTT-TAAAACATT
1 ATAAAATATTGT-AAATATT
* *
67765453 A-AAAAT-TTGTAAAAAAT
1 ATAAAATATTGTAAATATT
*
67765470 AGAAAA-ATTGTAAAT
1 ATAAAATATTGTAAAT
67765485 TTTTTAAAGA
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
17 8 0.14
18 18 0.32
19 23 0.40
20 8 0.14
ACGTcount: A:0.55, C:0.01, G:0.07, T:0.37
Consensus pattern (19 bp):
ATAAAATATTGTAAATATT
Found at i:67767721 original size:15 final size:15
Alignment explanation
Indices: 67767689--67767724 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
67767679 AGTACTTTAG
*
67767689 TTTTCAATACTTAAT
1 TTTTCAACACTTAAT
*
67767704 TTTTCAACACTTATT
1 TTTTCAACACTTAAT
67767719 TTTTCA
1 TTTTCA
67767725 GTTTATCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTTCAACACTTAAT
Found at i:67776565 original size:28 final size:28
Alignment explanation
Indices: 67776525--67776583 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
67776515 AAGTGAGCCT
67776525 TAAGCGTTTTACCTTTTCCTTTAAAAAC
1 TAAGCGTTTTACCTTTTCCTTTAAAAAC
67776553 TAAGCGTTTTACCTTTTCCTTTAAAAAC
1 TAAGCGTTTTACCTTTTCCTTTAAAAAC
67776581 TAA
1 TAA
67776584 CTTGATTAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (28 bp):
TAAGCGTTTTACCTTTTCCTTTAAAAAC
Found at i:67782216 original size:16 final size:18
Alignment explanation
Indices: 67782189--67782221 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
67782179 AAGTCTTCAA
67782189 AAAATAATATTA-AAAAC
1 AAAATAATATTATAAAAC
67782206 AAAAT-ATATTATAAAA
1 AAAATAATATTATAAAA
67782222 TATTAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAATAATATTATAAAAC
Found at i:67782244 original size:15 final size:15
Alignment explanation
Indices: 67782215--67782244 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67782205 CAAAATATAT
*
67782215 TATAAAATATTAAAA
1 TATAAAATATAAAAA
67782230 TATAAAATATAAAAA
1 TATAAAATATAAAAA
67782245 AAAGTTCTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAAATATAAAAA
Found at i:67786037 original size:16 final size:17
Alignment explanation
Indices: 67786001--67786037 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
67785991 AATTTTATTT
*
67786001 TAATAATAATTTTTAAA
1 TAATAATAATATTTAAA
67786018 -AATAATAA-ATTTAAA
1 TAATAATAATATTTAAA
67786033 TAATA
1 TAATA
67786038 TTCTTCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATAATAATATTTAAA
Found at i:67790579 original size:43 final size:43
Alignment explanation
Indices: 67790518--67790739 Score: 279
Period size: 43 Copynumber: 5.2 Consensus size: 43
67790508 ATATGTAACA
*
67790518 CCGCTAAAGACCAGGACTTTTAGCGGCGCTTGTATAAAAAACG
1 CCGCTAAAGACCAGGACTTTTAGCGGCGCTTATATAAAAAACG
* *
67790561 CCGCTAAAGATCAGGACTTTTAGCGGCGCTTATATAAAAAACA
1 CCGCTAAAGACCAGGACTTTTAGCGGCGCTTATATAAAAAACG
* *
67790604 CCGCTAAAGACCAGGACTTTTAGCGGCACTTATATAAAAAATG
1 CCGCTAAAGACCAGGACTTTTAGCGGCGCTTATATAAAAAACG
* * *
67790647 CCGCTAAAGACCAGGACTTTTAGTGGCACTTTTATAAAAAACG
1 CCGCTAAAGACCAGGACTTTTAGCGGCGCTTATATAAAAAACG
* * * * *
67790690 CCACTATAA-A-TAGGACTTTTAACGGCG-TTTTTTAAAAAAGCG
1 CCGCTA-AAGACCAGGACTTTTAGCGGCGCTTATATAAAAAA-CG
*
67790732 TCGCTAAA
1 CCGCTAAA
67790740 TGTCCTGGTC
Statistics
Matches: 159, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
41 13 0.08
42 19 0.12
43 125 0.79
44 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (43 bp):
CCGCTAAAGACCAGGACTTTTAGCGGCGCTTATATAAAAAACG
Found at i:67791098 original size:15 final size:15
Alignment explanation
Indices: 67791078--67791113 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
67791068 GTTCTGCTCC
67791078 GCCTCCCTCGCTGCT
1 GCCTCCCTCGCTGCT
67791093 GCCTCCCTCGCTGCT
1 GCCTCCCTCGCTGCT
*
67791108 GTCTCC
1 GCCTCC
67791114 GCTCTAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.00, C:0.53, G:0.19, T:0.28
Consensus pattern (15 bp):
GCCTCCCTCGCTGCT
Found at i:67795258 original size:26 final size:24
Alignment explanation
Indices: 67795228--67795275 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
67795218 AATAAAAAAA
*
67795228 TTAAAAATATAATAAATCAAATATAT
1 TTAAAAACATAA-AAA-CAAATATAT
67795254 TTAAAAACATAAAAACAAATAT
1 TTAAAAACATAAAAACAAATAT
67795276 TAAAACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
TTAAAAACATAAAAACAAATATAT
Found at i:67795295 original size:21 final size:21
Alignment explanation
Indices: 67795246--67795304 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
67795236 ATAATAAATC
*
67795246 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
67795266 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
67795288 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
67795305 TTCTTAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:67799142 original size:29 final size:28
Alignment explanation
Indices: 67799103--67799185 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
67799093 CACTTTGTGC
67799103 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
67799132 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* * *
67799160 GATACTGATGTGTTTT-GAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
67799186 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
27 10 0.20
28 21 0.43
29 18 0.37
ACGTcount: A:0.20, C:0.04, G:0.29, T:0.47
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:67799420 original size:23 final size:23
Alignment explanation
Indices: 67799390--67799475 Score: 101
Period size: 21 Copynumber: 4.0 Consensus size: 23
67799380 GCTATACTGA
*
67799390 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
*
67799413 TCAGGCACCTTGTGTGTCGTA--
1 TCAGGCACCTTATGTGTCGTATT
* *
67799434 TCAGGCACCTCATGTGT--TTTT
1 TCAGGCACCTTATGTGTCGTATT
67799455 TCAGGCA-CTTATGTGTCGTAT
1 TCAGGCACCTTATGTGTCGTAT
67799476 ACTGATCAGG
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
19 1 0.02
20 8 0.15
21 22 0.42
22 2 0.04
23 19 0.37
ACGTcount: A:0.16, C:0.21, G:0.23, T:0.40
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:67800713 original size:46 final size:48
Alignment explanation
Indices: 67800555--67800723 Score: 161
Period size: 46 Copynumber: 3.5 Consensus size: 48
67800545 CGGTTGGACC
67800555 ATGGCATCA-A-TGTGATATGTGA-TCTGTGTAAGACCATAGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTC-GTGTAAGACCATAGCTGGGCT
* * * * *
67800601 ATGGCATCAGAGATATGTGATTACGTGCTTCCGTATAAGACCATATCTGGGAT
1 ATGGCATCAGAG---TGTGA-TATGTGATT-CGTGTAAGACCATAGCTGGGCT
*
67800654 ATGGCATC--AGTGTGATATGTGATTCGTGTAAGACCATGGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
* *
67800700 ATGGC-TACGGTGTGTGATATGTGA
1 ATGGCAT-CAGAGTGTGATATGTGA
67800724 CTATATGCAA
Statistics
Matches: 100, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
45 1 0.01
46 33 0.33
47 8 0.08
48 18 0.18
51 7 0.07
52 5 0.05
53 27 0.27
54 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.31
Consensus pattern (48 bp):
ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
Found at i:67804226 original size:9 final size:9
Alignment explanation
Indices: 67804212--67804378 Score: 154
Period size: 9 Copynumber: 17.6 Consensus size: 9
67804202 ATGTATTTGT
67804212 TAAGTTATG
1 TAAGTTATG
67804221 TAAGTTGTTATG
1 TAA---GTTATG
*
67804233 TACGTTATG
1 TAAGTTATG
*
67804242 TGAGTTATG
1 TAAGTTATG
*
67804251 TAAATTATG
1 TAAGTTATG
67804260 TAAGTTATG
1 TAAGTTATG
*
67804269 TGAGTTATG
1 TAAGTTATG
67804278 TAAGTTGTTATG
1 TAA---GTTATG
*
67804290 TAAATTATG
1 TAAGTTATG
67804299 TAAGTTATG
1 TAAGTTATG
*
67804308 TGAGTTATG
1 TAAGTTATG
67804317 TAAGTTGGTATG
1 TAAG-T--TATG
*
67804329 TAAATTATG
1 TAAGTTATG
*
67804338 TAAGTTATA
1 TAAGTTATG
*
67804347 TGAGTTATG
1 TAAGTTATG
67804356 TAAGTTATG
1 TAAGTTATG
* *
67804365 TAATTTATT
1 TAAGTTATG
67804374 TAAGT
1 TAAGT
67804379 AATGATCAAA
Statistics
Matches: 128, Mismatches: 21, Indels: 18
0.77 0.13 0.11
Matches are distributed among these distances:
9 102 0.80
10 1 0.01
11 1 0.01
12 24 0.19
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:67804288 original size:39 final size:39
Alignment explanation
Indices: 67804245--67804361 Score: 216
Period size: 39 Copynumber: 3.0 Consensus size: 39
67804235 CGTTATGTGA
67804245 GTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
1 GTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
67804284 GTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
1 GTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
* *
67804323 GGTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
1 GTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
67804362 ATGTAATTTA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.32, C:0.00, G:0.23, T:0.45
Consensus pattern (39 bp):
GTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
Found at i:67804288 original size:48 final size:43
Alignment explanation
Indices: 67804227--67804366 Score: 179
Period size: 39 Copynumber: 3.4 Consensus size: 43
67804217 TATGTAAGTT
*
67804227 GTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATGTGA
1 GTTATGTAAG-TATGT-AGTTATGTAAATTATGTAAGTTATGTGA
67804272 GTTATGTAAG--T-T-GTTATGTAAATTATGTAAGTTATGTGA
1 GTTATGTAAGTATGTAGTTATGTAAATTATGTAAGTTATGTGA
*
67804311 GTTATGTAAGT-TG--G-TATGTAAATTATGTAAGTTATATGA
1 GTTATGTAAGTATGTAGTTATGTAAATTATGTAAGTTATGTGA
67804350 GTTATGTAAGTTATGTA
1 GTTATGTAAG-TATGTA
67804367 ATTTATTTAA
Statistics
Matches: 87, Mismatches: 2, Indels: 14
0.84 0.02 0.14
Matches are distributed among these distances:
39 71 0.82
40 3 0.03
41 3 0.03
42 1 0.01
45 9 0.10
ACGTcount: A:0.31, C:0.01, G:0.24, T:0.45
Consensus pattern (43 bp):
GTTATGTAAGTATGTAGTTATGTAAATTATGTAAGTTATGTGA
Found at i:67804305 original size:57 final size:58
Alignment explanation
Indices: 67804212--67804378 Score: 198
Period size: 57 Copynumber: 2.9 Consensus size: 58
67804202 ATGTATTTGT
* *
67804212 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGT-TATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAATTATGTAAGTGTATG
* * * *
67804269 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTTGGTATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAATTATGTAAG-T-GTATG
* * * *
67804329 TAAATTATGTAAGTT-ATATG--AGTTATGTAAGTTATGTAATTTATTTAAGT
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAATTATGTAAGT
67804379 AATGATCAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
56 1 0.01
57 71 0.76
58 1 0.01
59 4 0.04
60 17 0.18
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (58 bp):
TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAATTATGTAAGTGTATG
Found at i:67804367 original size:48 final size:48
Alignment explanation
Indices: 67804212--67804367 Score: 179
Period size: 48 Copynumber: 3.2 Consensus size: 48
67804202 ATGTATTTGT
* * * *
67804212 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATG
1 TAAGTTATGTAAGTTGGTATGTAAGTTATGTAAGTTATGTAAGTTATG
* * * * *
67804260 TAAGTTATGTGAGTTATGTAAGT-TGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTT-GGTATGTAAGTTATGTAAGTTATGTAAGTTATG
* * * *
67804308 TGAGTTATGTAAGTTGGTATGTAAATTATGTAAGTTATATGAGTTATG
1 TAAGTTATGTAAGTTGGTATGTAAGTTATGTAAGTTATGTAAGTTATG
67804356 TAAGTTATGTAA
1 TAAGTTATGTAA
67804368 TTTATTTAAG
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
47 5 0.06
48 79 0.90
49 4 0.05
ACGTcount: A:0.31, C:0.01, G:0.23, T:0.45
Consensus pattern (48 bp):
TAAGTTATGTAAGTTGGTATGTAAGTTATGTAAGTTATGTAAGTTATG
Found at i:67804982 original size:240 final size:241
Alignment explanation
Indices: 67804558--67805043 Score: 875
Period size: 240 Copynumber: 2.0 Consensus size: 241
67804548 TTAAGGTTAT
*
67804558 ATAAATATTCCATAGTAAATGAGCTCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
* *
67804623 TCATCATACGTGGCGTTGTTACACTTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
* *
67804688 ACCTGTCAGGTTTCCAGTCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
67804753 GGTCAGGTATTGTTGTAATTTTAATGGACAAGCAAGCTACACGGCA
196 GGTCAGGTATTGTTGTAATTTTAATGGACAAGCAAGCTACACGGCA
* *
67804799 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTATGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
*
67804864 TCATCATACGTGACGTTGTTACACCTAGGG-GGATCCATTATATCTTATAGCTCGATATAAGGCA
66 TCATCATACGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
67804928 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
* *
67804993 GGTCAGGTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
196 GGTCAGGTATTGTTGTAATTTTAATGGACAAGCAAGCTACACGGCA
67805039 ATAAA
1 ATAAA
67805044 ATTAATTCAT
Statistics
Matches: 235, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
240 145 0.62
241 90 0.38
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (241 bp):
ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
TCATCATACGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
GGTCAGGTATTGTTGTAATTTTAATGGACAAGCAAGCTACACGGCA
Found at i:67805529 original size:14 final size:13
Alignment explanation
Indices: 67805510--67805539 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
67805500 CAATATAATT
67805510 TTACTTCATATATA
1 TTACTTCATATA-A
67805524 TTACTTCATATAA
1 TTACTTCATATAA
67805537 TTA
1 TTA
67805540 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:67808680 original size:37 final size:36
Alignment explanation
Indices: 67808560--67808679 Score: 132
Period size: 37 Copynumber: 3.2 Consensus size: 36
67808550 TATGCAGCAG
67808560 ATGCACGGGACGAAGGCGATGGAGGCCGAGATGGGTTGCA
1 ATGCACGGGA-GAAGGCGATGGA-G--GAGATGGGTTGCA
* * * * *
67808600 ATGAACGGTGCGAAGGCGATGGAGGGGATGGTTTGCG
1 ATGCACGG-GAGAAGGCGATGGAGGAGATGGGTTGCA
*
67808637 ATGCACAGGGAGAAGGCAATGGAGGAGATGGGTTGCA
1 ATGCAC-GGGAGAAGGCGATGGAGGAGATGGGTTGCA
67808674 ATGCAC
1 ATGCAC
67808680 AAGGAGATTT
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
37 44 0.66
38 2 0.03
39 1 0.01
40 19 0.28
41 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.44, T:0.15
Consensus pattern (36 bp):
ATGCACGGGAGAAGGCGATGGAGGAGATGGGTTGCA
Found at i:67809530 original size:15 final size:15
Alignment explanation
Indices: 67809507--67809538 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
67809497 AAATAATAAT
67809507 TTATATATATTTATC
1 TTATATATATTTATC
*
67809522 TTATTTATATTTATC
1 TTATATATATTTATC
67809537 TT
1 TT
67809539 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:67809696 original size:18 final size:17
Alignment explanation
Indices: 67809670--67809703 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
67809660 ATACACAACC
67809670 CCTAAACCAACCATAAAT
1 CCTAAACC-ACCATAAAT
*
67809688 CCTAGACCACCATAAA
1 CCTAAACCACCATAAA
67809704 GCCCAAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.47, C:0.35, G:0.03, T:0.15
Consensus pattern (17 bp):
CCTAAACCACCATAAAT
Done.