Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 234 of 292
Found at i:68111724 original size:53 final size:51
Alignment explanation
Indices: 68111633--68111741 Score: 121
Period size: 53 Copynumber: 2.1 Consensus size: 51
68111623 TTAATTCTGG
* * * *
68111633 CATTTATTTATTCATCTACTTGTTTATTTATTCTTTATTCCATTTATTTTATT
1 CATTTATCTATTCATCTACTTATTTATTTATTCATTATT-AATTTA-TTTATT
* *
68111686 CATTTATCTGTTCATTTACTTATTTATTTATAT-ATTATTAATTTATTTATT
1 CATTTATCTATTCATCTACTTATTTATTTAT-TCATTATTAATTTATTTATT
*
68111737 TATTT
1 CATTT
68111742 TTGTTTCAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
51 10 0.21
52 5 0.10
53 32 0.67
54 1 0.02
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.64
Consensus pattern (51 bp):
CATTTATCTATTCATCTACTTATTTATTTATTCATTATTAATTTATTTATT
Found at i:68111978 original size:13 final size:13
Alignment explanation
Indices: 68111936--68111978 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 13
68111926 CATTTTGTTC
*
68111936 ATTTATTATCATT
1 ATTTTTTATCATT
*
68111949 A-TTATTATCATT
1 ATTTTTTATCATT
68111961 ATTTTTTATC-TT
1 ATTTTTTATCATT
68111973 ATTTTT
1 ATTTTT
68111979 ATTACTTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 20 0.71
13 8 0.29
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (13 bp):
ATTTTTTATCATT
Found at i:68115658 original size:16 final size:17
Alignment explanation
Indices: 68115628--68115659 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68115618 CCTAAGCATT
68115628 AAAAAATGATCATTCTC
1 AAAAAATGATCATTCTC
68115645 AAAAAATGAT-ATTCT
1 AAAAAATGATCATTCT
68115660 ACATTAATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.31
Consensus pattern (17 bp):
AAAAAATGATCATTCTC
Found at i:68116288 original size:183 final size:186
Alignment explanation
Indices: 68115808--68116357 Score: 445
Period size: 189 Copynumber: 2.9 Consensus size: 186
68115798 ATCAGTAAAA
* * * * ** * *
68115808 CCACAAATCCTATACCCCTGAAGTTGCAGTGGGATGGATTGAAGTCATTATGGTGAATATTATCT
1 CCACAAATCCTATACCTCTGAAGTTGCAGTAGGATGGATTCAAATCACCATGGCGAATCTTATCT
* ** * * * * * * * ***
68115873 TCCTGACGTTGTAGTGGAGAAAATTAAAGGC-ACAAATCTTATCTCCTTGAAGTCGCAAATGAA-
66 CCCTGAAATTGTAATGGAGCAAATTGAA-GCTACAAACCTTATCTCCCTAAAGTTGCAGCGGAAC
* * ** * * *
68115936 TAGATTGAAGTCACAGATCTCATCTCTTTGAAATTGCAGTGGAGTAGATCAAAGATTGAAG
130 TAGA-T-AAGTCA-A-ATCTTATTTCCCTGAAGTTGCAGTGGAGTAGATTAAAGATTCAAG
* * * * **
68115997 CCATAAATCTTATACCTCTGAAGTTGCAGTGGGATGGATTGAAATCATTATGGCGAATCTTATCT
1 CCACAAATCCTATACCTCTGAAGTTGCAGTAGGATGGATTCAAATCACCATGGCGAATCTTATCT
* * * * * * * *
68116062 CCTTGAAGTTGTAGTGGAGCAAATTGGAGCTGCTAATCTTATCTCCCTGAAA-TTGCAGCGG-AG
66 CCCTGAAATTGTAATGGAGCAAATTGAAGCTACAAACCTTATCTCCCT-AAAGTTGCAGCGGAAC
* *
68116125 TAGAT-AG-CGAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAG-TTACAAG
130 TAGATAAGTCAAATCTTATTTCCCTGAAGTTGCAGTGGAGTAGATTAAAGATT-CAAG
* * *
68116180 TCACAAATCCTATACCTCTGAAGTTGTAGTAGG-TCGGA-TCAAATCTACCATGGTGAATCTTAT
1 CCACAAATCCTATACCTCTGAAGTTGCAGTAGGAT-GGATTCAAATC-ACCATGGCGAATCTTAT
* * *
68116243 CTCCCTGAAATTGTAATGGAGTAGATTGAAG-TCACAAACCTTATCTCCCTAAAGTTGCAGTGGA
64 CTCCCTGAAATTGTAATGGAGCAAATTGAAGCT-ACAAACCTTATCTCCCTAAAGTTGCAGCGGA
* *
68116307 ACTAGTTGAAGTTACAAATCTTATTTCCCTGAAGTTACAGTGGAGTAGATT
128 ACTAGAT-AAG-T-CAAATCTTATTTCCCTGAAGTTGCAGTGGAGTAGATT
68116358 GAAAATATTA
Statistics
Matches: 294, Mismatches: 53, Indels: 28
0.78 0.14 0.07
Matches are distributed among these distances:
182 13 0.04
183 126 0.43
184 6 0.02
185 1 0.00
186 4 0.01
188 4 0.01
189 138 0.47
190 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (186 bp):
CCACAAATCCTATACCTCTGAAGTTGCAGTAGGATGGATTCAAATCACCATGGCGAATCTTATCT
CCCTGAAATTGTAATGGAGCAAATTGAAGCTACAAACCTTATCTCCCTAAAGTTGCAGCGGAACT
AGATAAGTCAAATCTTATTTCCCTGAAGTTGCAGTGGAGTAGATTAAAGATTCAAG
Found at i:68116419 original size:89 final size:89
Alignment explanation
Indices: 68116326--68116535 Score: 242
Period size: 89 Copynumber: 2.4 Consensus size: 89
68116316 AGTTACAAAT
*
68116326 CTTATTTCCCTGAAGTTACAGTGGAGTAGATTGAAAATATTAACTCTTATCTCTCTGAAGTTGCA
1 CTTATTTCCCTGAAGTTGCAGTGGAGTAGATTGAAAATA-TAACTCTTATCTCTCTGAAGTTGCA
*
68116391 GTAGAGCAGACTAAAGCTA-TAAAC
65 GTAGAGCAGACTAAAGATAGTAAAC
* ** * * * ** * * *
68116415 CTTATCTCTTTAAAGTTGCAGTGGAGAAGGTTGAAGTTATAAGTCTTATCTTTCTGAAGTTGTAG
1 CTTATTTCCCTGAAGTTGCAGTGGAGTAGATTGAAAATATAACTCTTATCTCTCTGAAGTTGCAG
* * * *
68116480 TGGAGCAGACTGAAGATAGTACAT
66 TAGAGCAGACTAAAGATAGTAAAC
*
68116504 CTTATTTCCCTGAAGTTGCAGTGGAATAGATT
1 CTTATTTCCCTGAAGTTGCAGTGGAGTAGATT
68116536 AAAGCTACAA
Statistics
Matches: 96, Mismatches: 24, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
88 38 0.40
89 58 0.60
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (89 bp):
CTTATTTCCCTGAAGTTGCAGTGGAGTAGATTGAAAATATAACTCTTATCTCTCTGAAGTTGCAG
TAGAGCAGACTAAAGATAGTAAAC
Found at i:68116456 original size:44 final size:44
Alignment explanation
Indices: 68116238--68116528 Score: 199
Period size: 44 Copynumber: 6.6 Consensus size: 44
68116228 CATGGTGAAT
* * * * * * *
68116238 CTTATCTCCCTGAAATTGTAATGGAGTAGATTGAAGTCACAAAC
1 CTTATCTCTCTGAAGTTGCAGTGGAGAAGATTGAAGTTATAAAC
* * * *
68116282 CTTATCTCCCTAAAGTTGCAGTGGA-ACTAG-TTGAAGTTACAAAT
1 CTTATCTCTCTGAAGTTGCAGTGGAGA--AGATTGAAGTTATAAAC
* * * * ** *
68116326 CTTATTTCCCTGAAGTTACAGTGGAGTAGATTGAAAATATTAAC
1 CTTATCTCTCTGAAGTTGCAGTGGAGAAGATTGAAGTTATAAAC
* * * * *
68116370 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGACTAAAGCTATAAAC
1 -CTTATCTCTCTGAAGTTGCAGTGGAGAAGATTGAAGTTATAAAC
* * * **
68116415 CTTATCTCTTTAAAGTTGCAGTGGAGAAGGTTGAAGTTATAAGT
1 CTTATCTCTCTGAAGTTGCAGTGGAGAAGATTGAAGTTATAAAC
* * * * * * *
68116459 CTTATCTTTCTGAAGTTGTAGTGGAGCAGACTGAAGATAGTACAT
1 CTTATCTCTCTGAAGTTGCAGTGGAGAAGATTGAAGTTA-TAAAC
* *
68116504 CTTATTTCCCTGAAGTTGCAGTGGA
1 CTTATCTCTCTGAAGTTGCAGTGGA
68116529 ATAGATTAAA
Statistics
Matches: 191, Mismatches: 50, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
43 2 0.01
44 129 0.68
45 60 0.31
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (44 bp):
CTTATCTCTCTGAAGTTGCAGTGGAGAAGATTGAAGTTATAAAC
Found at i:68116539 original size:133 final size:131
Alignment explanation
Indices: 68116235--68116545 Score: 340
Period size: 133 Copynumber: 2.3 Consensus size: 131
68116225 TACCATGGTG
* * * *
68116235 AATCTTATCTCCCTGAAATTGTAATGGAGTAGATTGAAG-TCACAAACCTTATCTCCCTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCT-ACAAACCTTATCTCCCTAAAGTT
* *
68116299 GCAGTGGAACTAGTTGAAGTTACAAATCTTATTTCCCTGAAGTTACAGTGGAGTAGATTGAAAAT
65 GCAGTGGAAC-AGTTGAAGTTACAAATCTTATTTCCCTGAAGTTACAGTGGAGCAGACTGAAAAT
*
68116364 ATT
129 AGT
* * * * * **
68116367 AACTCTTATCTCTCTGAAGTTGCAGTAGAGCAGACTAAAGCTATAAACCTTATCTCTTTAAAGTT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCTACAAACCTTATCTCCCTAAAGTT
* * * ** *
68116432 GCAGTGGAGA-AGGTTGAAGTTATAAGTCTTATCTT-TCTGAAGTTGTAGTGGAGCAGACTGAAG
65 GCAGTGGA-ACA-GTTGAAGTTACAAATCTTAT-TTCCCTGAAGTTACAGTGGAGCAGACTGAAA
68116495 ATAGT
127 ATAGT
* *
68116500 ACATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAA
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCTACAA
68116546 GTTACAAATC
Statistics
Matches: 146, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
132 3 0.02
133 138 0.95
134 5 0.03
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (131 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCTACAAACCTTATCTCCCTAAAGTTG
CAGTGGAACAGTTGAAGTTACAAATCTTATTTCCCTGAAGTTACAGTGGAGCAGACTGAAAATAG
T
Found at i:68117961 original size:4 final size:4
Alignment explanation
Indices: 68117937--68118061 Score: 65
Period size: 4 Copynumber: 30.8 Consensus size: 4
68117927 TTAAGTCCTT
* * * * * *
68117937 TTTA TTTTA ATTA TGTTA TTTA TTTA TTTA TCTA CTTG CTTA TTTA -TTC
1 TTTA -TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * * * *
68117986 TTTA TTCCA TTTA TTTTA TTCA TTTA TCTG TTCA TTTA CTCA TTTA TTTA
1 TTTA TT-TA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* *
68118036 TATA -TTA TTCA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
68118062 TTGTTTCAAT
Statistics
Matches: 87, Mismatches: 28, Indels: 11
0.69 0.22 0.09
Matches are distributed among these distances:
3 4 0.05
4 68 0.78
5 15 0.17
ACGTcount: A:0.23, C:0.10, G:0.02, T:0.65
Consensus pattern (4 bp):
TTTA
Found at i:68118301 original size:12 final size:13
Alignment explanation
Indices: 68118273--68118301 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
68118263 CATTTTGTTC
68118273 ATTTATTATCATT
1 ATTTATTATCATT
68118286 ATTTATTATC-TT
1 ATTTATTATCATT
68118298 ATTT
1 ATTT
68118302 TCACTGCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.66
Consensus pattern (13 bp):
ATTTATTATCATT
Found at i:68118850 original size:38 final size:39
Alignment explanation
Indices: 68118805--68119263 Score: 213
Period size: 38 Copynumber: 12.4 Consensus size: 39
68118795 ACCCTTATTT
* *
68118805 AAGGGTTGGGAAAGACCTAGTCAATGCCAACCTTT-AAA
1 AAGGGTTGGGATAGACCTAGTCAAGGCCAACCTTTGAAA
*
68118843 AAGGGTTGGGATAGACCTAGTTAAGGCCAACCTTTGAAA
1 AAGGGTTGGGATAGACCTAGTCAAGGCCAACCTTTGAAA
* *
68118882 AA-GGTTGCGATAGACCT-GTTTAAGG-CAACC-TT--AA
1 AAGGGTTGGGATAGACCTAG-TCAAGGCCAACCTTTGAAA
* ** * * * *
68118916 AAGGGTTGGTATAGTTCTTGTTTAACG-CAA-CTTTTAAA
1 AAGGGTTGGGATAGACCTAG-TCAAGGCCAACCTTTGAAA
* *
68118954 AACGATTGGGATAGAGCC--GTCTAAGG-CAACC-TT-AAA
1 AAGGGTTGGGATAGA-CCTAGTC-AAGGCCAACCTTTGAAA
* * * * *
68118990 AA-GGTTGAGATAGACCTTGTCTAA-GACAACCTATAAAA
1 AAGGGTTGGGATAGACCTAGTC-AAGGCCAACCTTTGAAA
*
68119028 AAAGGTTGGGATAGACCTA-TCTAAGG-CAACC-TT-AAA
1 AAGGGTTGGGATAGACCTAGTC-AAGGCCAACCTTTGAAA
* * *
68119064 CA-GGCTGGGATAGACC-ATGTCTAAGG-CAACC-TTAAAA
1 AAGGGTTGGGATAGACCTA-GTC-AAGGCCAACCTTTGAAA
** * *
68119101 AAAAGTTGGAATAGACC-CGTTCAAGG-CAACC-TT-AAA
1 AAGGGTTGGGATAGACCTAG-TCAAGGCCAACCTTTGAAA
68119137 AA-GGTTGGGATAGACC-ATGTCTAAGG-CAACCTTT-AAA
1 AAGGGTTGGGATAGACCTA-GTC-AAGGCCAACCTTTGAAA
**
68119174 AAAAGTTGGGATAGACCT-GTCTAAGG-CAACC-TT--AA
1 AAGGGTTGGGATAGACCTAGTC-AAGGCCAACCTTTGAAA
* * * * *
68119209 AATGGTTGGGATAAATCTTGTCTAAGG-CAA-CTTTTAAA
1 AAGGGTTGGGATAGACCTAGTC-AAGGCCAACCTTTGAAA
*
68119247 AAAGGTTGGGATAGACC
1 AAGGGTTGGGATAGACC
68119264 CGTTTAAAGC
Statistics
Matches: 350, Mismatches: 40, Indels: 62
0.77 0.09 0.14
Matches are distributed among these distances:
34 7 0.02
35 67 0.19
36 79 0.23
37 53 0.15
38 123 0.35
39 21 0.06
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.24
Consensus pattern (39 bp):
AAGGGTTGGGATAGACCTAGTCAAGGCCAACCTTTGAAA
Found at i:68118967 original size:73 final size:73
Alignment explanation
Indices: 68118810--68119370 Score: 513
Period size: 73 Copynumber: 7.6 Consensus size: 73
68118800 TATTTAAGGG
* * *
68118810 TTGGGAAAGACCTAGTC-AATGCCAACCTTTAAAAAGGGTTGGGATAGACCTAGT-TAAGGCCAA
1 TTGGGATAGACCT-GTCTAA-GGCAACC-TTAAAAA-GGTTGGGATAGACCTTGTCTAAGG-CAA
* * *
68118873 CCTTTGAAAAAGG
61 CTTTTAAAAAAGA
* * * * ** * *
68118886 TTGCGATAGACCTGTTTAAGGCAACCTTAAAAGGGTTGGTATAGTTCTTGTTTAACGCAACTTTT
1 TTGGGATAGACCTGTCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTT
*
68118951 AAAAACGA
66 AAAAAAGA
* * *
68118959 TTGGGATAGAGCC-GTCTAAGGCAACCTTAAAAAGGTTGAGATAGACCTTGTCTAAGACAACCTA
1 TTGGGATAGA-CCTGTCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAA-CTT
* *
68119023 TAAAAAAAGG
64 TTAAAAAAGA
* * * * *
68119033 TTGGGATAGACCTATCTAAGGCAACCTTAAACAGGCTGGGATAGACCATGTCTAAGGCAAC-CTT
1 TTGGGATAGACCTGTCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTT
*
68119097 AAAAAAAA
66 AAAAAAGA
* * * *
68119105 GTTGGAATAGACCCGT-TCAAGGCAACCTTAAAAAGGTTGGGATAGACCATGTCTAAGGCAACCT
1 -TTGGGATAGACCTGTCT-AAGGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTT
68119169 TTAAAAAA-A
64 TTAAAAAAGA
* * *
68119178 GTTGGGATAGACCTGTCTAAGGCAACCTTAAAATGGTTGGGATAAATCTTGTCTAAGGCAACTTT
1 -TTGGGATAGACCTGTCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTT
*
68119243 TAAAAAAGG
65 TAAAAAAGA
* * * * * * * * * * *
68119252 TTGGGATAGACCCGTTTAAAGCAACTTTAGAAAGGTTGAGATAAATCTTATCTAAGGTAACCTTT
1 TTGGGATAGACCTGTCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTT
*
68119317 AAAAAAGG
66 AAAAAAGA
* * * ** * *
68119325 TTAGGATAAACCCGTCTAAGATAACCTGAAAAAGATTGGGATAGAC
1 TTGGGATAGACCTGTCTAAGGCAACCTTAAAAAGGTTGGGATAGAC
68119371 ACGTATAATG
Statistics
Matches: 400, Mismatches: 75, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
72 8 0.02
73 290 0.73
74 81 0.20
75 8 0.02
76 13 0.03
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (73 bp):
TTGGGATAGACCTGTCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTT
AAAAAAGA
Found at i:68119231 original size:220 final size:222
Alignment explanation
Indices: 68118808--68119263 Score: 561
Period size: 220 Copynumber: 2.1 Consensus size: 222
68118798 CTTATTTAAG
* *
68118808 GGTTGGGAAAGACCTAGTCAATGCCAACCTTTAAAAAGGGTTGGGATAGACCTAGTTAAGGCCAA
1 GGTTGGGATAGACCTAGTCAATGCCAACCTTTAAAAAGGGCTGGGATAGACCTAGTTAAGGCCAA
** * * * * * ** * *
68118873 CCTTTGAAAAAGGTTGCGATAGACCTGTTTAAGGCAACCTTAAAAGGGTTGGTATAGTTCTTGTT
66 CCTTAAAAAAAAGTTGCGATAGACCCGTTCAAGGCAACCTTAAAAAGGTTGGGATAGACCATGTC
* * *
68118938 TAACGCAACTTTTAAAAACGATTGGGATAGAGCCGTCTAAGGCAACCTTAAAAAGGTTGAGATAG
131 TAACGCAACTTTAAAAAAAGATTGGGATAGAGCCGTCTAAGGCAACCTTAAAAAGGTTGAGATAA
68119003 ACCTTGTCTAAGACAACCTATAAAAAAA
196 ACCTTGTCTAAGACAA-CTATAAAAAAA
* *
68119031 GGTTGGGATAGACCTA-TCTAA-GGCAACC-TTAAACA-GGCTGGGATAGACC-ATGTCTAAGG-
1 GGTTGGGATAGACCTAGTC-AATGCCAACCTTTAAAAAGGGCTGGGATAGACCTA-GT-TAAGGC
68119090 CAACCTTAAAAAAAAGTTG-GAATAGACCCGTTCAAGGCAACCTTAAAAAGGTTGGGATAGACCA
63 CAACCTTAAAAAAAAGTTGCG-ATAGACCCGTTCAAGGCAACCTTAAAAAGGTTGGGATAGACCA
* *
68119154 TGTCTAAGGCAACCTTTAAAAAAAG-TTGGGATAGA-CCTGTCTAAGGCAACCTTAAAATGGTTG
127 TGTCTAACGCAA-CTTTAAAAAAAGATTGGGATAGAGCC-GTCTAAGGCAACCTTAAAAAGGTTG
* * * * *
68119217 GGATAAATCTTGTCTAAGGCAACTTTTAAAAAA
190 AGATAAACCTTGTCTAAGACAACTATAAAAAAA
68119250 GGTTGGGATAGACC
1 GGTTGGGATAGACC
68119264 CGTTTAAAGC
Statistics
Matches: 202, Mismatches: 25, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
219 27 0.13
220 129 0.64
221 21 0.10
222 8 0.04
223 17 0.08
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (222 bp):
GGTTGGGATAGACCTAGTCAATGCCAACCTTTAAAAAGGGCTGGGATAGACCTAGTTAAGGCCAA
CCTTAAAAAAAAGTTGCGATAGACCCGTTCAAGGCAACCTTAAAAAGGTTGGGATAGACCATGTC
TAACGCAACTTTAAAAAAAGATTGGGATAGAGCCGTCTAAGGCAACCTTAAAAAGGTTGAGATAA
ACCTTGTCTAAGACAACTATAAAAAAA
Found at i:68119237 original size:146 final size:145
Alignment explanation
Indices: 68118832--68119369 Score: 587
Period size: 146 Copynumber: 3.7 Consensus size: 145
68118822 TAGTCAATGC
* * * * *
68118832 CAACCTTTAAAAAGGGTTGGGATAGACCTAGT-TAAGGCCAACCTTTGAAAAAGGTTGCGATAGA
1 CAACC-TTAAAAA-GGTTGAGATAGACCTTGTCTAAGG-CAACCTTTAAAAAAAGTTGGGATAGA
* * * * * * *
68118896 CCTGTTTAAGGCAACCTTAAAAGGGTTGGTATAGTTCTTGTTTAACGCAA-CTTTTAAAAACGAT
63 CCTGTCTAAGGCAACCTTAAAA-GGTTGGGATAGATCTTGTCTAAGGCAACCTTTAAAAAAAG-T
*
68118960 TGGGATAGAGCCG-TCTAAGG
126 TGGGATAGACCCGTTC-AAGG
* *
68118980 CAACCTTAAAAAGGTTGAGATAGACCTTGTCTAAGACAACCTATAAAAAAAGGTTGGGATAGACC
1 CAACCTTAAAAAGGTTGAGATAGACCTTGTCTAAGGCAACCTTTAAAAAAA-GTTGGGATAGACC
* * * * *
68119045 TATCTAAGGCAACCTTAAACAGGCTGGGATAGACCATGTCTAAGGCAACCTTAAAAAAAAGTTGG
65 TGTCTAAGGCAACCTTAAA-AGGTTGGGATAGATCTTGTCTAAGGCAACCTTTAAAAAAAGTTGG
*
68119110 AATAGACCCGTTCAAGG
129 GATAGACCCGTTCAAGG
* *
68119127 CAACCTTAAAAAGGTTGGGATAGACCATGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGACCT
1 CAACCTTAAAAAGGTTGAGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGACCT
* * *
68119192 GTCTAAGGCAACCTTAAAATGGTTGGGATAAATCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGG
66 GTCTAAGGCAACCTTAAAA-GGTTGGGATAGATCTTGTCTAAGGCAACCTTTAAAAAAAGTTGGG
* *
68119257 ATAGACCCGTTTAAAG
130 ATAGACCCGTTCAAGG
* * * * * * * * * *
68119273 CAACTTTAGAAAGGTTGAGATAAATCTTATCTAAGGTAACCTTTAAAAAAGGTTAGGATAAACCC
1 CAACCTTAAAAAGGTTGAGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGACCT
** * *
68119338 GTCTAAGATAACCTGAAAAAGATTGGGATAGA
66 GTCTAAGGCAACCT-TAAAAGGTTGGGATAGA
68119370 CACGTATAAT
Statistics
Matches: 330, Mismatches: 53, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
145 1 0.00
146 185 0.56
147 127 0.38
148 17 0.05
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (145 bp):
CAACCTTAAAAAGGTTGAGATAGACCTTGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGACCT
GTCTAAGGCAACCTTAAAAGGTTGGGATAGATCTTGTCTAAGGCAACCTTTAAAAAAAGTTGGGA
TAGACCCGTTCAAGG
Found at i:68128010 original size:26 final size:26
Alignment explanation
Indices: 68127973--68128056 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
68127963 TGATACAAAT
* *
68127973 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
68127999 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTCA
68128025 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68128051 TGATAA
1 TGATAA
68128057 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:68134612 original size:37 final size:37
Alignment explanation
Indices: 68134556--68134650 Score: 131
Period size: 37 Copynumber: 2.6 Consensus size: 37
68134546 TTTATATTAA
**
68134556 AAAACCCTAAAATTTTAAACCCCAAACCCATA-ATCAC
1 AAAACCCTAAAATCCTAAACCCCAAACCCATATA-CAC
*
68134593 AAAATCCTAAAATCCTAAACCCCAAACCCATATACAC
1 AAAACCCTAAAATCCTAAACCCCAAACCCATATACAC
68134630 AAAACCCTAAAA-CCTTAAACC
1 AAAACCCTAAAATCC-TAAACC
68134651 ATAAACTCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
36 2 0.04
37 49 0.94
38 1 0.02
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17
Consensus pattern (37 bp):
AAAACCCTAAAATCCTAAACCCCAAACCCATATACAC
Found at i:68134652 original size:29 final size:28
Alignment explanation
Indices: 68134620--68134676 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
68134610 AACCCCAAAC
* *
68134620 CCATATACACAAAACCCTAAAACCTTAAA
1 CCATAAACACAAAACACT-AAACCTTAAA
* *
68134649 CCATAAACTCTAAACACTAAACCTTAAA
1 CCATAAACACAAAACACTAAACCTTAAA
68134677 TCCTAAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.19
Consensus pattern (28 bp):
CCATAAACACAAAACACTAAACCTTAAA
Found at i:68135158 original size:132 final size:134
Alignment explanation
Indices: 68134921--68135654 Score: 915
Period size: 132 Copynumber: 5.4 Consensus size: 134
68134911 TATGTTGACA
* * *
68134921 AGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAACTGTCGTCTTAGGACTAGACAAAAGCCA
1 AGTCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCA
68134986 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
66 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
68135051 A-T-
131 ATTC
* * * *
68135053 AGTCTATCCCAACACTTAGGAAAGTGTTGCCATAAAAGTGTCATCTTAGGACTACAGAAAAGCCA
1 AGTCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCA
* *
68135118 ACTCTTATTCAAGCGTTGCCTTAGGCGTACATACCCCAACCCTTATACAAAGAGTTGGCCAAAGC
66 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
*
68135183 -GT-
131 ATTC
*
68135185 AGTCTATCCCAACACTTAGGAAAGTGTCGCCACGAAAGTGTCGTCTTAGGACTACACAAAAGCCA
1 AGTCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCA
* * * *
68135250 ACTCTTATTCAAGCATTGTCTTAGGCATACATATCCCAACCCTTATATAAAGAGTTGCCCAAAGT
66 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAA--
*
68135315 GTATGTTCGC
129 GCA--TT--C
* * * *
68135325 AACTCTATCCCAACACTTAAGAAAGTGTCGTCACAAAAGTGTCGTCTTAGGACTATACAAAAGCC
1 -AGTCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCC
* * *
68135390 AACTCTTATTCAAGCGTCGCCTTAGGCATACATATCCCAACCCTTATACAAAGATTTGCCCAAAG
65 AACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAG
68135455 CGTATGTTCGC
130 C--A--TT--C
* * * * *
68135466 AACTCTATCCCAACACTTAGGAAAGTGTTGCCCCAAAAGTGTCATCTTAGGACTAGAC-AAAGCC
1 -AGTCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCC
* * * *
68135530 AACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCCCAACCCTTAAACAAAGAGTTGGCCAAAG
65 AACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAG
*
68135595 AATATGTTGGCC
130 --CA--TT---C
*
68135607 AGTCTATCCCAACACTTAGGAAAGTGTCACC-CATAAA-TGTCGTCTTAG
1 AGTCTATCCCAACACTTAGGAAAGTGTCGCCACA-AAAGTGTCGTCTTAG
68135655 CACTGTTTTG
Statistics
Matches: 533, Mismatches: 53, Indels: 25
0.87 0.09 0.04
Matches are distributed among these distances:
132 239 0.45
134 1 0.00
137 1 0.00
139 13 0.02
140 100 0.19
141 179 0.34
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (134 bp):
AGTCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCA
ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
ATTC
Found at i:68135613 original size:140 final size:141
Alignment explanation
Indices: 68135187--68135654 Score: 681
Period size: 141 Copynumber: 3.3 Consensus size: 141
68135177 CAAAGCGTAG
*
68135187 TCTATCCCAACACTTAGGAAAGTGTCGCCACGAAAGTGTCGTCTTAGGACTACACAAAAGCCAAC
1 TCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAAC
* * * *
68135252 TCTTATTCAAGCATTGTCTTAGGCATACATATCCCAACCCTTATATAAAGAGTTGCCCAAAGTGT
66 TCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGCCCAAAGAGT
68135317 ATGTTCGCAAC
131 ATGTTCGCAAC
* * *
68135328 TCTATCCCAACACTTAAGAAAGTGTCGTCACAAAAGTGTCGTCTTAGGACTATACAAAAGCCAAC
1 TCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAAC
* * *
68135393 TCTTATTCAAGCGTCGCCTTAGGCATACATATCCCAACCCTTATACAAAGATTTGCCCAAAGCGT
66 TCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGCCCAAAGAGT
68135458 ATGTTCGCAAC
131 ATGTTCGCAAC
* * * *
68135469 TCTATCCCAACACTTAGGAAAGTGTTGCCCCAAAAGTGTCATCTTAGGACTAGAC-AAAGCCAAC
1 TCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAAC
* * * * * *
68135533 TCTTATTTAAGTGTTGCCTTAGGCATGCATATCCCAACCCTTAAACAAAGAGTTGGCCAAAGAAT
66 TCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGCCCAAAGAGT
* * *
68135598 ATGTTGGCCAG
131 ATGTTCGCAAC
*
68135609 TCTATCCCAACACTTAGGAAAGTGTCACC-CATAAA-TGTCGTCTTAG
1 TCTATCCCAACACTTAGGAAAGTGTCGCCACA-AAAGTGTCGTCTTAG
68135655 CACTGTTTTG
Statistics
Matches: 295, Mismatches: 31, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
139 12 0.04
140 103 0.35
141 180 0.61
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (141 bp):
TCTATCCCAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAAC
TCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGCCCAAAGAGT
ATGTTCGCAAC
Found at i:68139735 original size:14 final size:15
Alignment explanation
Indices: 68139716--68139771 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
68139706 AATCTTCAAT
68139716 GATATGA-AATCTTA
1 GATATGACAATCTTA
68139730 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
68139747 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
68139765 GATATGA
1 GATATGA
68139772 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
16 1 0.03
17 13 0.36
18 15 0.42
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:68139762 original size:18 final size:18
Alignment explanation
Indices: 68139723--68139785 Score: 101
Period size: 18 Copynumber: 3.5 Consensus size: 18
68139713 AATGATATGA
*
68139723 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTGC
68139740 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTGC
68139758 AATCTTAGATATGATATGC
1 AATCTTAGATATGAT-TGC
68139777 AATCTTAGA
1 AATCTTAGA
68139786 AGATATGATT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
17 14 0.33
18 17 0.40
19 12 0.28
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTGC
Found at i:68139764 original size:35 final size:37
Alignment explanation
Indices: 68139714--68139793 Score: 114
Period size: 35 Copynumber: 2.2 Consensus size: 37
68139704 ATAATCTTCA
68139714 ATGATATGAAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGAAATCTTAGATATGATAGCAATCTTAGAT
*
68139750 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGAAATCTTAGATATGATA-GCAATCTTAGAT
68139786 A-GATATGA
1 ATGATATGA
68139794 TTTTGTAATC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
35 21 0.54
36 8 0.21
37 10 0.26
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGAAATCTTAGATATGATAGCAATCTTAGAT
Found at i:68139792 original size:17 final size:19
Alignment explanation
Indices: 68139714--68139785 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
68139704 ATAATCTTCA
*
68139714 ATGATATGAAATCTTAGAT
1 ATGATATGCAATCTTAGAT
68139733 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
68139750 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
68139768 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
68139786 AGATATGATT
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
17 15 0.31
18 16 0.33
19 18 0.37
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:68139811 original size:22 final size:22
Alignment explanation
Indices: 68139746--68139808 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
68139736 ATACAATCTT
68139746 AGATATGAT-TGCAATCTT---
1 AGATATGATATGCAATCTTAGA
68139764 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCTTAGA
* *
68139786 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGCAATCTTAGA
68139809 GATTTAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
18 9 0.24
19 9 0.24
22 8 0.21
23 12 0.32
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATCTTAGA
Found at i:68140100 original size:18 final size:19
Alignment explanation
Indices: 68140077--68140112 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
68140067 TTTCCCTGAT
*
68140077 TTTTTTTATAT-ATTTTAA
1 TTTTTTTAAATAATTTTAA
68140095 TTTTTTTAAATAATTTTA
1 TTTTTTTAAATAATTTTA
68140113 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTTAAATAATTTTAA
Found at i:68142003 original size:42 final size:42
Alignment explanation
Indices: 68141926--68142119 Score: 219
Period size: 43 Copynumber: 4.5 Consensus size: 42
68141916 AAAAACGACA
* * * * *
68141926 CTAAAAGCCATGACTTTTAGCGACGTTTGAAAAAAAAGTGCCG
1 CTAAAAGTCATGGCTTTTAGCGGCATTTG-TAAAAAAGTGCCG
* *
68141969 TTAAAAGTCATGGTTTTTAGCGGCATTTGTAAAAAAGTGCCG
1 CTAAAAGTCATGGCTTTTAGCGGCATTTGTAAAAAAGTGCCG
***
68142011 CTAAAAGTCATGGCTTTTAGCGGCATTTGTTGGGAAAGTGCCG
1 CTAAAAGTCATGGCTTTTAGCGGCATTTG-TAAAAAAGTGCCG
*
68142054 CTAAAAGTCATGGCTTTTAGCGGCGTTTGTAGGAAAAA-TGCCG
1 CTAAAAGTCATGGCTTTTAGCGGCATTTGTA--AAAAAGTGCCG
* * *
68142097 CTAAAACTCAAGGGTTTTAGCGG
1 CTAAAAGTCATGGCTTTTAGCGG
68142120 TGTTTTTTCC
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
42 40 0.31
43 86 0.67
44 3 0.02
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (42 bp):
CTAAAAGTCATGGCTTTTAGCGGCATTTGTAAAAAAGTGCCG
Found at i:68142015 original size:85 final size:85
Alignment explanation
Indices: 68141926--68142102 Score: 221
Period size: 85 Copynumber: 2.1 Consensus size: 85
68141916 AAAAACGACA
* * *
68141926 CTAAAAGCCATGACTTTTAGCGACGTTTGAAAAAAAAGTGCCGTTAAAAGTCATGGTTTTTAGCG
1 CTAAAAGCCATGACTTTTAGCGACATTTGAAAAAAAAGTGCCGCTAAAAGTCATGGCTTTTAGCG
68141991 GCATTTGTA-AAAAAGTGCCG
66 GCATTTGTAGAAAAA-TGCCG
* * * *****
68142011 CTAAAAGTCATGGCTTTTAGCGGCATTTGTTGGGAAAGTGCCGCTAAAAGTCATGGCTTTTAGCG
1 CTAAAAGCCATGACTTTTAGCGACATTTGAAAAAAAAGTGCCGCTAAAAGTCATGGCTTTTAGCG
*
68142076 GCGTTTGTAGGAAAAATGCCG
66 GCATTTGTA-GAAAAATGCCG
68142097 CTAAAA
1 CTAAAA
68142103 CTCAAGGGTT
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
85 62 0.79
86 11 0.14
87 5 0.06
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (85 bp):
CTAAAAGCCATGACTTTTAGCGACATTTGAAAAAAAAGTGCCGCTAAAAGTCATGGCTTTTAGCG
GCATTTGTAGAAAAATGCCG
Found at i:68142142 original size:86 final size:85
Alignment explanation
Indices: 68141959--68142143 Score: 212
Period size: 86 Copynumber: 2.2 Consensus size: 85
68141949 CGTTTGAAAA
* * * *
68141959 AAAAGTGCCGTTAAAAGTCATGGTTTTTAGCGGCATTTGTAAAAAAGTGCCGCTAAAAGTCATGG
1 AAAA-TGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTAAAAAAGTGCCGCTAAAACTCAAGG
**
68142024 CTTTTAGCGGCATTTGTTGGG
65 CTTTTAGCGGCATTTGTTGCC
* *
68142045 AAAGTGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTAGGAAAAA-TGCCGCTAAAACTCAAG
1 AAAATGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTA--AAAAAGTGCCGCTAAAACTCAAG
* ** *
68142109 GGTTTTAGCGGTGTTT-TTTCC
64 GCTTTTAGCGGCATTTGTTGCC
68142130 ACAAATGCCGCTAA
1 A-AAATGCCGCTAA
68142144 TTTTGACAGA
Statistics
Matches: 83, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
85 36 0.43
86 42 0.51
87 5 0.06
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (85 bp):
AAAATGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTAAAAAAGTGCCGCTAAAACTCAAGGC
TTTTAGCGGCATTTGTTGCC
Found at i:68142250 original size:31 final size:31
Alignment explanation
Indices: 68142195--68142277 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 31
68142185 CTTCCTGCAT
* ** *
68142195 TAAAATCCAACCAAATCCAACAAATATAGCA
1 TAAAATACAACCAAAAACAACAAATATACCA
* *
68142226 TAAAATACAACCAAAAACAGCAAATTTACCA
1 TAAAATACAACCAAAAACAACAAATATACCA
68142257 TAAAAAATACAACCAAAAACA
1 T--AAAATACAACCAAAAACA
68142278 TTAATTCTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
31 26 0.59
33 18 0.41
ACGTcount: A:0.60, C:0.23, G:0.02, T:0.14
Consensus pattern (31 bp):
TAAAATACAACCAAAAACAACAAATATACCA
Found at i:68142988 original size:13 final size:14
Alignment explanation
Indices: 68142963--68142991 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
68142953 TGATGAATTG
68142963 AATTAAACAATTAT
1 AATTAAACAATTAT
68142977 AATTAAAC-ATTAT
1 AATTAAACAATTAT
68142990 AA
1 AA
68142992 CTATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:68143894 original size:20 final size:20
Alignment explanation
Indices: 68143869--68143932 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
68143859 CTCGACCCAC
68143869 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATAT
*
68143889 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAT
*
68143909 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAT
68143929 CATG
1 CATG
68143933 CTTATCAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:68143900 original size:11 final size:11
Alignment explanation
Indices: 68143869--68143922 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
68143859 CTCGACCCAC
68143869 CATGTGCATAT
1 CATGTGCATAT
*
68143880 CA--TACATAT
1 CATGTGCATAT
68143889 CATGTGCATAT
1 CATGTGCATAT
* *
68143900 CA--TACATGT
1 CATGTGCATAT
68143909 CATGTGCATAT
1 CATGTGCATAT
68143920 CAT
1 CAT
68143923 ACATACCATG
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:68144002 original size:25 final size:25
Alignment explanation
Indices: 68143970--68144017 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68143960 ATATATAAAT
* * *
68143970 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
68143995 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
68144018 CATATTGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:68150959 original size:9 final size:9
Alignment explanation
Indices: 68150945--68151045 Score: 71
Period size: 9 Copynumber: 11.0 Consensus size: 9
68150935 TATTTATGTA
68150945 TTATGTAAG
1 TTATGTAAG
*
68150954 TTATGTAAA
1 TTATGTAAG
68150963 TTATGTAAG
1 TTATGTAAG
* **
68150972 TTATTTATC
1 TTATGTAAG
*
68150981 TTATGTAAA
1 TTATGTAAG
68150990 TTATGTAAG
1 TTATGTAAG
** *
68150999 ACATGATACG
1 TTATG-TAAG
68151009 TCATTATGT-A-
1 ---TTATGTAAG
68151019 TTATGTAAG
1 TTATGTAAG
*
68151028 TTATGTAAA
1 TTATGTAAG
68151037 TTATGTAAG
1 TTATGTAAG
68151046 ATATTTATCT
Statistics
Matches: 69, Mismatches: 17, Indels: 12
0.70 0.17 0.12
Matches are distributed among these distances:
7 6 0.09
8 1 0.01
9 55 0.80
10 3 0.04
12 1 0.01
13 3 0.04
ACGTcount: A:0.36, C:0.04, G:0.16, T:0.45
Consensus pattern (9 bp):
TTATGTAAG
Found at i:68150967 original size:18 final size:18
Alignment explanation
Indices: 68150944--68151124 Score: 93
Period size: 18 Copynumber: 9.8 Consensus size: 18
68150934 ATATTTATGT
68150944 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
* *
68150962 ATTATGTAAGTTATTTAT
1 ATTATGTAAGTTATGTAA
* *
68150980 CTTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
* *
68150998 GA-CATGATACGTCATTATGT--
1 -ATTATG-TAAG---TTATGTAA
68151018 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
* * *
68151036 ATTATGTAAGATATTTAT
1 ATTATGTAAGTTATGTAA
* * *
68151054 CTTATGTAAATTGTGTAAGA
1 ATTATGTAAGTTATGT-A-A
* * *
68151074 CATGATATATATTTATGT--
1 -ATTATGTA-AGTTATGTAA
68151092 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
* *
68151110 ATTATATAAGATATG
1 ATTATGTAAGTTATG
68151125 ATATATATTT
Statistics
Matches: 118, Mismatches: 31, Indels: 28
0.67 0.18 0.16
Matches are distributed among these distances:
16 13 0.11
17 6 0.05
18 72 0.61
19 7 0.06
20 3 0.03
21 5 0.04
22 12 0.10
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.45
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:68150969 original size:47 final size:48
Alignment explanation
Indices: 68150907--68151138 Score: 174
Period size: 47 Copynumber: 4.8 Consensus size: 48
68150897 AGGGATTATC
*
68150907 TTATGTAAATCATGTAAGATATGATATATATTTATGT-ATTATGTAAG
1 TTATGTAAATTATGTAAGATATGATATATATTTATGTAATTATGTAAG
68150954 TTATGTAAATTATGTAAG-T-T-AT-T-TATCTTATGTAAATTATGTAAG
1 TTATGTAAATTATGTAAGATATGATATATAT-TTATGT-AATTATGTAAG
** * * * * * * * **
68150999 ACATGATACGTCATTATGTATTATG-TAAGTTATGTAAATTATGTAAGATATTTATC
1 TTATG-TA---AATTATGTA--A-GATATGATATAT-ATTTATGTAA-TTATGTAAG
* *
68151055 TTATGTAAATTGTGTAAGACATGATATATATTTATGT-ATTATGTAAG
1 TTATGTAAATTATGTAAGATATGATATATATTTATGTAATTATGTAAG
*
68151102 TTATGTAAATTATATAAGATATGATATATATTTATGT
1 TTATGTAAATTATGTAAGATATGATATATATTTATGT
68151139 TGATGGGATT
Statistics
Matches: 141, Mismatches: 27, Indels: 34
0.70 0.13 0.17
Matches are distributed among these distances:
42 3 0.02
43 7 0.05
44 2 0.01
45 14 0.10
46 3 0.02
47 56 0.40
48 1 0.01
49 16 0.11
50 7 0.05
51 1 0.01
52 9 0.06
54 1 0.01
55 5 0.04
56 15 0.11
57 1 0.01
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (48 bp):
TTATGTAAATTATGTAAGATATGATATATATTTATGTAATTATGTAAG
Found at i:68151023 original size:74 final size:74
Alignment explanation
Indices: 68150902--68151123 Score: 365
Period size: 74 Copynumber: 3.0 Consensus size: 74
68150892 ATAAAAGGGA
* *
68150902 TTATCTTATGTAAATCATGTAAGATATGATATATATTTATGTATTATGTAAGTTATGTAAATTAT
1 TTATCTTATGTAAATTATGTAAGACATGATATATATTTATGTATTATGTAAGTTATGTAAATTAT
*
68150967 GTAAGTTAT
66 GTAAGATAT
**
68150976 TTATCTTATGTAAATTATGTAAGACATGATACGTCA-TTATGTATTATGTAAGTTATGTAAATTA
1 TTATCTTATGTAAATTATGTAAGACATGATATAT-ATTTATGTATTATGTAAGTTATGTAAATTA
68151040 TGTAAGATAT
65 TGTAAGATAT
*
68151050 TTATCTTATGTAAATTGTGTAAGACATGATATATATTTATGTATTATGTAAGTTATGTAAATTAT
1 TTATCTTATGTAAATTATGTAAGACATGATATATATTTATGTATTATGTAAGTTATGTAAATTAT
*
68151115 ATAAGATAT
66 GTAAGATAT
68151124 GATATATATT
Statistics
Matches: 137, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
73 1 0.01
74 135 0.99
75 1 0.01
ACGTcount: A:0.37, C:0.04, G:0.14, T:0.45
Consensus pattern (74 bp):
TTATCTTATGTAAATTATGTAAGACATGATATATATTTATGTATTATGTAAGTTATGTAAATTAT
GTAAGATAT
Found at i:68151062 original size:27 final size:27
Alignment explanation
Indices: 68150954--68151073 Score: 92
Period size: 27 Copynumber: 4.7 Consensus size: 27
68150944 ATTATGTAAG
*
68150954 TTATGTAAATTATGTAAGTTATTTATC
1 TTATGTAAATTATGTAAGATATTTATC
* *
68150981 TTATGTAAATTATGTAAGACA-TGA--
1 TTATGTAAATTATGTAAGATATTTATC
* * ** * **
68151005 -TACGT-CATTATGTATTATGT--AAG
1 TTATGTAAATTATGTAAGATATTTATC
68151028 TTATGTAAATTATGTAAGATATTTATC
1 TTATGTAAATTATGTAAGATATTTATC
*
68151055 TTATGTAAATTGTGTAAGA
1 TTATGTAAATTATGTAAGA
68151074 CATGATATAT
Statistics
Matches: 69, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
21 1 0.01
22 9 0.13
23 4 0.06
24 4 0.06
25 11 0.16
26 2 0.03
27 38 0.55
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (27 bp):
TTATGTAAATTATGTAAGATATTTATC
Found at i:68151354 original size:13 final size:14
Alignment explanation
Indices: 68151323--68151354 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
68151313 TTTTTCGTGA
68151323 TTAAAATAAAATAT
1 TTAAAATAAAATAT
68151337 TTAAAATAAAAT-T
1 TTAAAATAAAATAT
68151350 TTAAA
1 TTAAA
68151355 TACAATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
TTAAAATAAAATAT
Found at i:68151427 original size:95 final size:95
Alignment explanation
Indices: 68151269--68151581 Score: 472
Period size: 91 Copynumber: 3.2 Consensus size: 95
68151259 AATAATGATT
68151269 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAAATAAAA
68151334 TATTTAAAATAAAATTTTAAATACAATTTA
66 TATTTAAAATAAAATTTTAAATACAATTTA
*
68151364 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAAT-AAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAAATAAAA
68151428 -A--TAAAATAAAATTTTAAATACAATTTA
66 TATTTAAAATAAAATTTTAAATACAATTTA
* *
68151455 ATTTAATTAGGTAATTTAAAATTAAAATAAAAGTAGACAAAATATTTATCGTGATTAAATTAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG-----ATTAAAA
*
68151520 TAAAATAATATCTTCAAAATAAAACTTTAAATACAATTTA
61 T--AA-AATAT-TT-AAAATAAAATTTTAAATACAATTTA
68151560 ATTTAATTAGGTAATTTAAAAA
1 ATTTAATTAGGTAATTTAAAAA
68151582 AATTTAAAAT
Statistics
Matches: 198, Mismatches: 6, Indels: 18
0.89 0.03 0.08
Matches are distributed among these distances:
91 76 0.38
93 1 0.01
94 3 0.02
95 60 0.30
96 8 0.04
99 1 0.01
100 2 0.01
101 1 0.01
104 1 0.01
105 45 0.23
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (95 bp):
ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAAATAAAA
TATTTAAAATAAAATTTTAAATACAATTTA
Found at i:68151481 original size:48 final size:48
Alignment explanation
Indices: 68151337--68151486 Score: 150
Period size: 48 Copynumber: 3.2 Consensus size: 48
68151327 AATAAAATAT
68151337 TTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAA
1 TTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAA
* * * * * ** * * **
68151385 ATAAAATAAAA--GTAGACAAAATATT--TTTCCTGA-TTAAAATAAAA
1 TTAAAATAAAATTTTAAATACAAT-TTAATTTAATTAGGTAATTTAAAA
68151429 -TAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAA
1 TTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAA
68151476 TTAAAATAAAA
1 TTAAAATAAAA
68151487 GTAGACAAAA
Statistics
Matches: 74, Mismatches: 21, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
43 10 0.14
44 10 0.14
45 12 0.16
46 12 0.16
47 10 0.14
48 20 0.27
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (48 bp):
TTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAA
Found at i:68153067 original size:27 final size:26
Alignment explanation
Indices: 68153025--68153075 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
68153015 CAATCACATA
*
68153025 GTATTTTCTCTTAAAAGAAAGAAAGTT
1 GTATTTTCTCTCAAAA-AAAGAAAGTT
68153052 GTATTTTCTCTCAAAAAAAGAAAG
1 GTATTTTCTCTCAAAAAAAGAAAG
68153076 CTGGTTCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (26 bp):
GTATTTTCTCTCAAAAAAAGAAAGTT
Found at i:68154883 original size:14 final size:15
Alignment explanation
Indices: 68154859--68154888 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
68154849 CACAAACTTC
68154859 AGAATTTATGTATTT
1 AGAATTTATGTATTT
68154874 AGAA-TTATGTATTT
1 AGAATTTATGTATTT
68154888 A
1 A
68154889 TATCAACACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
AGAATTTATGTATTT
Found at i:68155382 original size:68 final size:68
Alignment explanation
Indices: 68155269--68155397 Score: 249
Period size: 68 Copynumber: 1.9 Consensus size: 68
68155259 ACAGGTGTAA
*
68155269 ACGAAAAAGGCAAAAGGGATAGTTAGAAACCTAAGTCCAATGCCTACAGGACACCTGACACTACG
1 ACGAAAAAGGCAAAAGGGATAGTTAGAAACCTAAGTCCAACGCCTACAGGACACCTGACACTACG
68155334 AAT
66 AAT
68155337 ACGAAAAAGGCAAAAGGGATAGTTAGAAACCTAAGTCCAACGCCTACAGGACACCTGACAC
1 ACGAAAAAGGCAAAAGGGATAGTTAGAAACCTAAGTCCAACGCCTACAGGACACCTGACAC
68155398 CTATAGACAG
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 60 1.00
ACGTcount: A:0.43, C:0.23, G:0.21, T:0.13
Consensus pattern (68 bp):
ACGAAAAAGGCAAAAGGGATAGTTAGAAACCTAAGTCCAACGCCTACAGGACACCTGACACTACG
AAT
Found at i:68156040 original size:26 final size:28
Alignment explanation
Indices: 68156011--68156069 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
68156001 CCCAAAAAAC
*
68156011 TTTAATATTAT-TTTAAAT-AATAGTAT
1 TTTAATATTATATTTAAATGAATAATAT
* * *
68156037 TTTAATTTTTTATTTAAATGAATAATTT
1 TTTAATATTATATTTAAATGAATAATAT
68156065 TTTAA
1 TTTAA
68156070 AATTTAACTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 9 0.33
27 7 0.26
28 11 0.41
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (28 bp):
TTTAATATTATATTTAAATGAATAATAT
Found at i:68156120 original size:16 final size:16
Alignment explanation
Indices: 68156099--68156152 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
68156089 AGAATTAGAT
68156099 AAAATTTGAAATCTTG
1 AAAATTTGAAATCTTG
68156115 AAAA-TT---A--TTG
1 AAAATTTGAAATCTTG
*
68156125 AAAATTTGAAATCTTT
1 AAAATTTGAAATCTTG
68156141 AAAATTTGAAAT
1 AAAATTTGAAAT
68156153 TAGTTAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
10 7 0.23
11 2 0.06
12 1 0.03
14 1 0.03
15 2 0.06
16 18 0.58
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (16 bp):
AAAATTTGAAATCTTG
Found at i:68156320 original size:52 final size:51
Alignment explanation
Indices: 68156262--68156380 Score: 125
Period size: 52 Copynumber: 2.3 Consensus size: 51
68156252 AACACTAATT
*** *
68156262 ACCCTAAACCCTAAACCCATAACCCATGTCCCTTA-ATGCCTTAACCCCTAA
1 ACCCTAAACCCTAAACCCATAACCCATAAACCTTAGA-CCCTTAACCCCTAA
* *
68156313 ATCCCTAAACCC-ATAACCCCTAACTCATAAACCTTAGACCCTTAACCCCTAA
1 A-CCCTAAACCCTA-AACCCATAACCCATAAACCTTAGACCCTTAACCCCTAA
**
68156365 ACTTTAAACCCTAAAC
1 ACCCTAAACCCTAAAC
68156381 TATGTACCCT
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
51 13 0.23
52 42 0.75
53 1 0.02
ACGTcount: A:0.36, C:0.39, G:0.03, T:0.22
Consensus pattern (51 bp):
ACCCTAAACCCTAAACCCATAACCCATAAACCTTAGACCCTTAACCCCTAA
Found at i:68156393 original size:22 final size:23
Alignment explanation
Indices: 68156368--68156415 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
68156358 CCCCTAAACT
*
68156368 TTAAACCC-TAAACTATGTACCC
1 TTAAACCCTTAAACCATGTACCC
**
68156390 TT-AACCCTTAGCCCATGTACCC
1 TTAAACCCTTAAACCATGTACCC
68156412 TTAA
1 TTAA
68156416 CTCCTAGACC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
21 5 0.24
22 15 0.71
23 1 0.05
ACGTcount: A:0.31, C:0.33, G:0.06, T:0.29
Consensus pattern (23 bp):
TTAAACCCTTAAACCATGTACCC
Found at i:68156561 original size:22 final size:22
Alignment explanation
Indices: 68156536--68156598 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 22
68156526 CCTTGAGATA
*
68156536 TTAACTCATAAACTATAAACCC
1 TTAACTCATAAACCATAAACCC
* *
68156558 TTAAAC-CTTAAACCCTAAACCC
1 TT-AACTCATAAACCATAAACCC
* * *
68156580 ATAATTCATAAACCTTAAA
1 TTAACTCATAAACCATAAA
68156599 ATATTAACTC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 27 0.84
23 3 0.09
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (22 bp):
TTAACTCATAAACCATAAACCC
Found at i:68156632 original size:25 final size:25
Alignment explanation
Indices: 68156585--68156632 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68156575 AACCCATAAT
* *
68156585 TCATAAACCTTAAAATATTAACTCA
1 TCATAAACCTTAAAACATAAACTCA
*
68156610 TCATAAACCTTAAACCATAAACT
1 TCATAAACCTTAAAACATAAACT
68156633 ATATACTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (25 bp):
TCATAAACCTTAAAACATAAACTCA
Found at i:68157001 original size:41 final size:40
Alignment explanation
Indices: 68156925--68157066 Score: 171
Period size: 41 Copynumber: 3.5 Consensus size: 40
68156915 ATGTTTTTGT
*
68156925 GGCGCTTTTTGAAAAAACGCTGCTATAAATC-GAGCATTAGC
1 GGCG-TTTTTGAAAAAACGC-GCTATAGATCTGAGCATTAGC
*
68156966 GGCGTTTTTCAAAAAACGACGCTATAGATCTGAGCATTAGC
1 GGCGTTTTTGAAAAAACG-CGCTATAGATCTGAGCATTAGC
* *
68157007 GGCGTTTTT-AAAAAAGTGCCGCTATAGGTCTGAGCATTAGC
1 GGCGTTTTTGAAAAAA-CG-CGCTATAGATCTGAGCATTAGC
* *
68157048 GGCGCTTTTGGAAAAACGC
1 GGCGTTTTTGAAAAAACGC
68157067 CACTAATAAC
Statistics
Matches: 89, Mismatches: 8, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
40 29 0.33
41 55 0.62
42 5 0.06
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (40 bp):
GGCGTTTTTGAAAAAACGCGCTATAGATCTGAGCATTAGC
Found at i:68158479 original size:3 final size:3
Alignment explanation
Indices: 68158473--68158606 Score: 134
Period size: 3 Copynumber: 45.3 Consensus size: 3
68158463 TACGTAAATA
* * * *
68158473 AAT AAT AAT AAT AAT AAT -AT AAT AGT AA- AAA AAT AAT AGT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
68158519 AAT AAAT AAT AAT AGT AAAT AAT AAT AAT AAT AAT GAT AGT AAT AAT
1 AAT -AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
68158566 AAT AAT AAT GAT AAT AAAT AAT -AT AA- AA- AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT A
68158607 GAAATATAAA
Statistics
Matches: 109, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
2 10 0.09
3 91 0.83
4 8 0.07
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:68158507 original size:19 final size:19
Alignment explanation
Indices: 68158485--68158553 Score: 56
Period size: 19 Copynumber: 3.6 Consensus size: 19
68158475 TAATAATAAT
68158485 AATAATATAATAGTAAAAA
1 AATAATATAATAGTAAAAA
*
68158504 AATAATAGTAAT-G-ATAATA
1 AATAATA-TAATAGTA-AAAA
68158523 AAT-A-ATAATAGTAAATAA
1 AATAATATAATAGTAAA-AA
68158541 TAATAATAATAAT
1 -AATAAT-ATAAT
68158554 GATAGTAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 15
0.70 0.04 0.27
Matches are distributed among these distances:
16 4 0.10
17 4 0.10
18 4 0.10
19 17 0.44
20 5 0.13
22 5 0.13
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (19 bp):
AATAATATAATAGTAAAAA
Found at i:68158510 original size:22 final size:22
Alignment explanation
Indices: 68158473--68158603 Score: 115
Period size: 22 Copynumber: 5.8 Consensus size: 22
68158463 TACGTAAATA
68158473 AATAATAATAATAATAATATAAT
1 AATAA-AATAATAATAATATAAT
* * * *
68158496 AGTAAAAAAATAATAGTAATGAT
1 AATAAAATAATAATAAT-ATAAT
*
68158519 AAT-AAATAATAATAGTA-AAT
1 AATAAAATAATAATAATATAAT
*
68158539 AATAATAATAATAATGATAGTAAT
1 AATAA-AATAATAATAATA-TAAT
*
68158563 AATAATAATAATGATAATA-AAT
1 AATAA-AATAATAATAATATAAT
*
68158585 AATATAAAAAATAATAATA
1 AATA-AAATAATAATAATA
68158604 ATAGAAATAT
Statistics
Matches: 89, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
20 5 0.06
21 2 0.02
22 51 0.57
23 11 0.12
24 20 0.22
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (22 bp):
AATAAAATAATAATAATATAAT
Found at i:68158612 original size:9 final size:8
Alignment explanation
Indices: 68158476--68158645 Score: 57
Period size: 9 Copynumber: 20.0 Consensus size: 8
68158466 GTAAATAAAT
68158476 AATAATAA
1 AATAATAA
*
68158484 TAATAATAT
1 -AATAATAA
*
68158493 AATAGTAA
1 AATAATAA
*
68158501 AAAAATAA
1 AATAATAA
* *
68158509 TAGTAATGAT
1 -AATAAT-AA
*
68158519 AATAA-AT
1 AATAATAA
68158526 AATAATAGTA
1 AATAATA--A
68158536 AATAATAA
1 AATAATAA
68158544 TAATAATAA
1 -AATAATAA
68158553 TGATAGTAATAA
1 --A-A-TAATAA
68158565 TAATAATAA
1 -AATAATAA
*
68158574 TGATAAT-A
1 -AATAATAA
68158582 AATAATATA
1 AATAATA-A
*
68158591 AAAAATAA
1 AATAATAA
68158599 TAATAATAGA
1 -AATAATA-A
68158609 AAT-AT-A
1 AATAATAA
68158615 AATAGAT-A
1 AATA-ATAA
68158623 AATAA-AA
1 AATAATAA
*
68158630 ATTAGAT-A
1 AATA-ATAA
68158638 AATAATAA
1 AATAATAA
68158646 TAGTATTTGA
Statistics
Matches: 124, Mismatches: 18, Indels: 39
0.69 0.10 0.22
Matches are distributed among these distances:
6 4 0.03
7 19 0.15
8 31 0.25
9 51 0.41
10 11 0.09
11 2 0.02
12 6 0.05
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (8 bp):
AATAATAA
Found at i:68158625 original size:14 final size:15
Alignment explanation
Indices: 68158608--68158642 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
68158598 ATAATAATAG
*
68158608 AAATATAAA-TAGAT
1 AAATAAAAATTAGAT
68158622 AAATAAAAATTAGAT
1 AAATAAAAATTAGAT
68158637 AAATAA
1 AAATAA
68158643 TAATAGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (15 bp):
AAATAAAAATTAGAT
Found at i:68158642 original size:90 final size:90
Alignment explanation
Indices: 68158473--68158650 Score: 215
Period size: 90 Copynumber: 2.0 Consensus size: 90
68158463 TACGTAAATA
* * *
68158473 AATAATAATAATAATAATATAATAGTAAAAAAATAATAGTAATGATAATAAATAATAATAGTAAA
1 AATAATAATAATAATAATATAATAATAAAAAAATAATAATAATGAAAATAAATAATAATAGTAAA
*
68158538 TAATAATAATAATAATGATAGTAAT
66 TAATAATAATAATAATAATAGTAAT
*
68158563 AATAATAATAATGATAATA-AATAATATAAAAAATAATAATAATAGAAATATAAATAGATAA-A-
1 AATAATAATAATAATAATATAATAATA-AAAAAATAATAATAAT-GAAA-ATAAATA-ATAATAG
68158625 TAAA-AAT--TAGATAAATAATAATAGTA
62 TAAATAATAATA-AT-AATAATAATAGTA
68158651 TTTGAATAAG
Statistics
Matches: 77, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
88 2 0.03
89 8 0.10
90 48 0.62
91 7 0.09
92 8 0.10
93 4 0.05
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (90 bp):
AATAATAATAATAATAATATAATAATAAAAAAATAATAATAATGAAAATAAATAATAATAGTAAA
TAATAATAATAATAATAATAGTAAT
Found at i:68160418 original size:143 final size:143
Alignment explanation
Indices: 68160198--68160974 Score: 975
Period size: 143 Copynumber: 5.4 Consensus size: 143
68160188 AGAATTACTG
* * * * * * **
68160198 TCTTCAGCCTGCGCCGCTACAACTTCAGGGGGATAAGACTGGTGGCTTCAATCCACTCCACTACA
1 TCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACA
* * * * *
68160263 ACTTTAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATATGTTCCACTGCAATTCTAGGGAA
66 ACTTCAGAAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAACTCTAGGGAA
*
68160328 ATAAGATTCACTT
131 ATAAGATTCGCTT
* * * * * * *
68160341 TCTTCAGTCTGCTCCACTGTAACTTTAGGGAGATAAGGCTAGTAGCTTCAATCTACTCCAGTGCA
1 TCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACA
* *
68160406 ACTTCAGAAAGATAAGATCCGCCATAATCTATAGCTTCAATCTGTTCCACTGCAACTCTAGGGAA
66 ACTTCAGAAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAACTCTAGGGAA
68160471 ATAAGATTCGCTT
131 ATAAGATTCGCTT
* * ** * **
68160484 TTTTCAATCTGCTTTGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACCGCA
1 TCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACA
** * * *
68160549 ACTTCA-AGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTATTCTACTGCAACTCCAGGGA
66 ACTTCAGA-AAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAACTCTAGGGA
*
68160613 AATGAGATTCGCTT
130 AATAAGATTCGCTT
* * * * * *
68160627 TTTTTAGTCTGCTTCACTGCAA-TTTCAGGGAGATAAGGCTAGTGGCTTCAATTTGCTCCACTAC
1 TCTTCAGTCTGCTCCGCTGCAACTTT-AGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTAC
* * * * * *
68160691 AACTTCAGGAAGATAAGATCCGCCATAATTTGTATCTTCATTCTGTTTCAATGCAACTCCAGGGA
65 AACTTCAGAAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAACTCTAGGGA
68160756 AATAAGATTCGCTT
130 AATAAGATTCGCTT
* * * *
68160770 TCTTCAGTCTGTTCTGCTGCAACTTCAGGGAAATAAGGCTGGTGGCTTCAATCTGCTCCACTACA
1 TCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACA
* ***
68160835 ACATCAGAAAGATAAGATCAATCATAATTTGTAGCTTCAATCTGTTCCACTGCAACTCTAGGGAA
66 ACTTCAGAAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAACTCTAGGGAA
*
68160900 ATAAGATTCGTTT
131 ATAAGATTCGCTT
* *
68160913 TCTTCAG-CTTGCTCCGCTACAACTTTAGGGAGATAAGGCTGGTGGATTCAATCTGCTCCACT
1 TCTTCAGTC-TGCTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACT
68160975 GCTACTTTAG
Statistics
Matches: 542, Mismatches: 87, Indels: 10
0.85 0.14 0.02
Matches are distributed among these distances:
142 5 0.01
143 535 0.99
144 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (143 bp):
TCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACA
ACTTCAGAAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAACTCTAGGGAA
ATAAGATTCGCTT
Found at i:68164774 original size:5 final size:5
Alignment explanation
Indices: 68164742--68164773 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
68164732 GGCCTCTTCA
68164742 TTTTC TTTTC TTTTC TTTTC TTTT- TTTT- TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
68164774 TGAGGTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 8 0.30
5 19 0.70
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (5 bp):
TTTTC
Found at i:68167797 original size:19 final size:20
Alignment explanation
Indices: 68167775--68167826 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
68167765 GGTCATTTCG
* *
68167775 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCAGATGCA
68167794 TGAAATGTAATGCAGATGCA
1 TGAAATGTAATGCAGATGCA
68167814 TGAAATG-AATGCA
1 TGAAATGTAATGCA
68167827 AAAAGAGGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 22 0.73
20 8 0.27
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (20 bp):
TGAAATGTAATGCAGATGCA
Found at i:68170471 original size:3 final size:3
Alignment explanation
Indices: 68170463--68170624 Score: 161
Period size: 3 Copynumber: 54.7 Consensus size: 3
68170453 TAAATAAATA
* * * *
68170463 AAT AAT AAT AAT -AT AAT AGT AA- AAA AAT AAT AGT AAT AAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
68170509 AAT AAA AAT AAAT AAT AAT AGT AAA AAT AAT AAT AAT AAT AAT AGT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
68170555 AAT AAT AAT AAT GAT AAT AAAT AAT -AT AAA AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
68170600 AAT AGT AGT AGT AA- AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
68170625 AACAATGATA
Statistics
Matches: 132, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
2 8 0.06
3 118 0.89
4 6 0.05
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:68171219 original size:26 final size:26
Alignment explanation
Indices: 68171190--68171299 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
68171180 TGATACAAAT
68171190 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
68171216 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
68171242 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
68171268 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68171294 TGATAA
1 TGATAA
68171300 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:68174482 original size:12 final size:12
Alignment explanation
Indices: 68174465--68174507 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
68174455 ACTCGGGGAA
68174465 GAGGCCGTGGTC
1 GAGGCCGTGGTC
68174477 GAGGCCGTGGTC
1 GAGGCCGTGGTC
68174489 GAGGCCGTGGTC
1 GAGGCCGTGGTC
68174501 GAGGCCG
1 GAGGCCG
68174508 AGGTAGTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.09, C:0.26, G:0.51, T:0.14
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:68179468 original size:25 final size:26
Alignment explanation
Indices: 68179374--68179482 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
68179364 TGATACAAAT
68179374 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
68179400 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
68179426 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
68179452 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68179477 TGATAA
1 TGATAA
68179483 GAATTCATGT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 24 0.31
26 54 0.69
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:68182206 original size:15 final size:15
Alignment explanation
Indices: 68182186--68182215 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
68182176 CATTTTATTT
*
68182186 ATATTAGGATAATTA
1 ATATTAAGATAATTA
68182201 ATATTAAGATAATTA
1 ATATTAAGATAATTA
68182216 TAAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:68184275 original size:13 final size:12
Alignment explanation
Indices: 68184257--68184286 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
68184247 AAAACAAATG
68184257 AATAATATGTAA
1 AATAATATGTAA
68184269 CAATAATATGTAA
1 -AATAATATGTAA
68184282 AATAA
1 AATAA
68184287 CATAAAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (12 bp):
AATAATATGTAA
Found at i:68184918 original size:36 final size:36
Alignment explanation
Indices: 68184833--68184919 Score: 88
Period size: 36 Copynumber: 2.4 Consensus size: 36
68184823 AATATAAATG
* *
68184833 ATATACAAAACAATACATATATATATATATATATATA
1 ATATACAAAA-AATACAAATATATATATAAATATATA
* * *
68184870 ATGTACATAAAATACAAATAGTTTAATATAAATA-AT-
1 ATATACAAAAAATACAAATA-TAT-ATATAAATATATA
68184906 ATATACAAAAAATA
1 ATATACAAAAAATA
68184920 ATATAATATT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
36 21 0.51
37 12 0.29
38 8 0.20
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.32
Consensus pattern (36 bp):
ATATACAAAAAATACAAATATATATATAAATATATA
Found at i:68186877 original size:10 final size:10
Alignment explanation
Indices: 68186838--68186888 Score: 50
Period size: 10 Copynumber: 4.9 Consensus size: 10
68186828 ATCGATTATA
*
68186838 TTATT-TATG
1 TTATTATATT
68186847 TTATTATATT
1 TTATTATATT
68186857 TTATTTATATATT
1 TTA--T-TATATT
68186870 TTATTATATT
1 TTATTATATT
*
68186880 TTGTTATAT
1 TTATTATAT
68186889 ATATTATTCC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
9 5 0.14
10 20 0.56
11 1 0.03
12 1 0.03
13 9 0.25
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (10 bp):
TTATTATATT
Found at i:68186893 original size:14 final size:14
Alignment explanation
Indices: 68186833--68186893 Score: 55
Period size: 14 Copynumber: 4.8 Consensus size: 14
68186823 ATTTTATCGA
68186833 TTATAT-TATTTATG
1 TTATATATATTT-TG
*
68186847 TTAT-TATATTTTA
1 TTATATATATTTTG
68186860 TT-TATATA--TT-
1 TTATATATATTTTG
68186870 TTAT-TATATTTTG
1 TTATATATATTTTG
68186883 TTATATATATT
1 TTATATATATT
68186894 ATTCCTTATA
Statistics
Matches: 39, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
10 6 0.15
11 3 0.08
12 3 0.08
13 12 0.31
14 15 0.38
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (14 bp):
TTATATATATTTTG
Found at i:68186896 original size:35 final size:35
Alignment explanation
Indices: 68186818--68186896 Score: 90
Period size: 35 Copynumber: 2.2 Consensus size: 35
68186808 AAAATAGTAC
68186818 ATATTATTTTATCGATTATATTATTTATGTTATTAT
1 ATATTATTTTATC-ATTATATTATTTATGTTATTAT
* * *
68186854 ATTTTATTTATAT-ATTTTATTATATTTTGTTA-TAT
1 ATATTATTT-TATCATTATATTAT-TTATGTTATTAT
68186889 ATATTATT
1 ATATTATT
68186897 CCTTATAGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
35 19 0.51
36 15 0.41
37 3 0.08
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (35 bp):
ATATTATTTTATCATTATATTATTTATGTTATTAT
Found at i:68186903 original size:26 final size:23
Alignment explanation
Indices: 68186833--68186893 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
68186823 ATTTTATCGA
* *
68186833 TTATATTATTTATGTTATTATATT
1 TTAT-TTATATATTTTATTATATT
68186857 TTATTTATATATTTTATTATATT
1 TTATTTATATATTTTATTATATT
*
68186880 TTGTTATATATATT
1 TTATT-TATATATT
68186894 ATTCCTTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 21 0.64
24 12 0.36
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (23 bp):
TTATTTATATATTTTATTATATT
Found at i:68192002 original size:2 final size:2
Alignment explanation
Indices: 68191995--68192026 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
68191985 TTAAAATTTA
68191995 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68192027 TAAGTCTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68193506 original size:26 final size:26
Alignment explanation
Indices: 68193469--68193552 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
68193459 TGATACAAAT
* *
68193469 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68193495 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68193521 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68193547 TGATAA
1 TGATAA
68193553 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:68197579 original size:14 final size:14
Alignment explanation
Indices: 68197560--68197591 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
68197550 CGGATGTGCA
68197560 TTGATTATCGCCAG
1 TTGATTATCGCCAG
68197574 TTGATTATCGCCAG
1 TTGATTATCGCCAG
68197588 TTGA
1 TTGA
68197592 ACAAACTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (14 bp):
TTGATTATCGCCAG
Found at i:68199255 original size:26 final size:26
Alignment explanation
Indices: 68199218--68199301 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
68199208 TGATACAAAT
* *
68199218 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68199244 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68199270 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68199296 TGATAA
1 TGATAA
68199302 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:68202767 original size:16 final size:17
Alignment explanation
Indices: 68202748--68202787 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
68202738 AATCTTATTT
68202748 TTATATAATTATT-TTA
1 TTATATAATTATTGTTA
68202764 TTATAT-ATTATTGTTA
1 TTATATAATTATTGTTA
*
68202780 TTTTATAA
1 TTATATAA
68202788 AATATTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 6 0.29
16 14 0.67
17 1 0.05
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTATATAATTATTGTTA
Found at i:68202781 original size:21 final size:21
Alignment explanation
Indices: 68202756--68202796 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68202746 TTTTATATAA
* *
68202756 TTATTTTATTATATATTATTG
1 TTATTTTATAAAATATTATTG
68202777 TTATTTTATAAAATATTATT
1 TTATTTTATAAAATATTATT
68202797 ATTTCGCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TTATTTTATAAAATATTATTG
Found at i:68202785 original size:18 final size:17
Alignment explanation
Indices: 68202724--68202800 Score: 52
Period size: 18 Copynumber: 4.4 Consensus size: 17
68202714 TATATTGTTA
*
68202724 TTTATTTTAT-TTTTAAT
1 TTTATTTTATATATT-AT
*
68202741 CTTATTTTTATATAATTAT
1 TTTA-TTTTATAT-ATTAT
68202760 TTTA--TTATATATTAT
1 TTTATTTTATATATTAT
* *
68202775 TGTTATTTTATAAAATAT
1 T-TTATTTTATATATTAT
68202793 TATTATTT
1 T-TTATTT
68202801 CGCATTCTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
15 6 0.12
16 9 0.19
17 3 0.06
18 22 0.46
19 6 0.12
20 2 0.04
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (17 bp):
TTTATTTTATATATTAT
Found at i:68202828 original size:13 final size:13
Alignment explanation
Indices: 68202714--68202839 Score: 52
Period size: 13 Copynumber: 9.9 Consensus size: 13
68202704 TAAAACTCTT
*
68202714 TATATTGTTATT-
1 TATATTATTATTA
* *
68202726 TATTTTATTTTTA
1 TATATTATTATTA
* *
68202739 -ATCTTATTTTTA
1 TATATTATTATTA
68202751 TATAATTATT-TTA
1 TAT-ATTATTATTA
*
68202764 T-TATATATTATTG
1 TATAT-TATTATTA
*
68202777 T-TATT-TTATAA
1 TATATTATTATTA
*
68202788 AATATTATTATT-
1 TATATTATTATTA
** *
68202800 TCGCATTCTTATTTA
1 T-ATATTATTA-TTA
68202815 TATATTATTATTA
1 TATATTATTATTA
68202828 TAT-TATATTATT
1 TATAT-TATTATT
68202840 TATTTATATA
Statistics
Matches: 86, Mismatches: 17, Indels: 21
0.69 0.14 0.17
Matches are distributed among these distances:
11 6 0.07
12 31 0.36
13 35 0.41
14 13 0.15
15 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.63
Consensus pattern (13 bp):
TATATTATTATTA
Found at i:68203098 original size:21 final size:21
Alignment explanation
Indices: 68203074--68203124 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
68203064 ATCATCAATT
*
68203074 ACTTATTTTGTAT-TATTCTAA
1 ACTTATTTT-TATATATTATAA
*
68203095 ACTTATGTTTATATATTATAA
1 ACTTATTTTTATATATTATAA
*
68203116 AATTATTTT
1 ACTTATTTT
68203125 ATTATAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 3 0.12
21 22 0.88
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (21 bp):
ACTTATTTTTATATATTATAA
Found at i:68203273 original size:19 final size:20
Alignment explanation
Indices: 68203251--68203292 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
68203241 ATATATTGCA
*
68203251 TATTAAATACTAT-TTTTAT
1 TATTAAATACCATATTTTAT
68203270 TATTAAATACCATATTTTAT
1 TATTAAATACCATATTTTAT
68203290 TAT
1 TAT
68203293 ACGAATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (20 bp):
TATTAAATACCATATTTTAT
Found at i:68204907 original size:2 final size:2
Alignment explanation
Indices: 68204900--68204937 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
68204890 TTATCTCTTT
68204900 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
68204938 TAGGTTTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:68205029 original size:2 final size:2
Alignment explanation
Indices: 68205022--68205055 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
68205012 GAAACTTCAG
68205022 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68205056 TGATGCATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68207150 original size:24 final size:25
Alignment explanation
Indices: 68207107--68207156 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
68207097 GTTTAGGGGC
68207107 AAAATTGTAATTTCCTC-AAATATG
1 AAAATTGTAATTTCCTCAAAATATG
*
68207131 AAAATTGTAATTT-TTCCAAAATATG
1 AAAATTGTAATTTCCT-CAAAATATG
68207156 A
1 A
68207157 TTTTGGGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 1 0.04
24 14 0.61
25 8 0.35
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (25 bp):
AAAATTGTAATTTCCTCAAAATATG
Found at i:68207719 original size:93 final size:92
Alignment explanation
Indices: 68207549--68207720 Score: 272
Period size: 93 Copynumber: 1.9 Consensus size: 92
68207539 CGGATATTTG
* * *
68207549 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAACGTCCGAACTCGTTGAGT
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGT
*
68207614 TGAGTCCAAGTTCGTGAGATGTAACTA
66 TAAGTCCAAGTTCGTGAGATGTAACTA
* *
68207641 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACCTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCA-CTATGGATGCGAACGCCCGAACTCGTTGAG
*
68207706 TTAAGTCCGAGTTCG
65 TTAAGTCCAAGTTCG
68207721 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 32 0.44
93 40 0.56
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGT
TAAGTCCAAGTTCGTGAGATGTAACTA
Found at i:68207727 original size:46 final size:46
Alignment explanation
Indices: 68207554--68207727 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
68207544 ATTTGGGCAT
* * *
68207554 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ATTATGGATGCGAACGT
1 CCGAACTCGTTGAGTTGAGTCCAAGTTCGCTTATGGATGCGAACGC
* *
68207599 CCGAACTCGTTGAGTTGAGTCCAAGTTCG-TGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCAAGTTCGCTTATGGATGCGAAC---GC
* * *
68207644 ATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACCTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCAAGTTCGCTTATGGATGCGAACGC
* * *
68207692 CCGAGCTCGTTGAGTTAAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
68207728 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 30 0.28
46 32 0.30
47 27 0.25
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCAAGTTCGCTTATGGATGCGAACGC
Found at i:68213678 original size:12 final size:13
Alignment explanation
Indices: 68213654--68213682 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
68213644 TGTCTGTTGT
68213654 AATTATATATTAA
1 AATTATATATTAA
68213667 AATTAT-TATTAA
1 AATTATATATTAA
68213679 AATT
1 AATT
68213683 TGAATTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AATTATATATTAA
Found at i:68214514 original size:11 final size:12
Alignment explanation
Indices: 68214493--68214518 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68214483 ATTCTATAAC
68214493 AAAAAGAAAAAA
1 AAAAAGAAAAAA
68214505 AAAAAGAAAAAA
1 AAAAAGAAAAAA
68214517 AA
1 AA
68214519 GTCATATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAAA
Found at i:68215106 original size:15 final size:15
Alignment explanation
Indices: 68215086--68215115 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
68215076 CATTTTATTT
*
68215086 ATATTAGGATAATTA
1 ATATTAAGATAATTA
68215101 ATATTAAGATAATTA
1 ATATTAAGATAATTA
68215116 TGAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:68216088 original size:12 final size:12
Alignment explanation
Indices: 68216068--68216097 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
68216058 CTACTTCCCC
68216068 TTTACTGTTATT
1 TTTACTGTTATT
*
68216080 TTTATTGTTATT
1 TTTACTGTTATT
68216092 TTTACT
1 TTTACT
68216098 ATTTTACAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.70
Consensus pattern (12 bp):
TTTACTGTTATT
Found at i:68216551 original size:20 final size:20
Alignment explanation
Indices: 68216519--68216557 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
68216509 CATTCAATTA
68216519 ATTTATATTTGGTTTATTTTT
1 ATTTATATTTGGTTT-TTTTT
68216540 ATTTAT-TTTGGTTTTTTT
1 ATTTATATTTGGTTTTTTT
68216558 GGGTGTTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 8 0.44
21 6 0.33
ACGTcount: A:0.15, C:0.00, G:0.10, T:0.74
Consensus pattern (20 bp):
ATTTATATTTGGTTTTTTTT
Found at i:68217239 original size:133 final size:133
Alignment explanation
Indices: 68216825--68217647 Score: 1207
Period size: 133 Copynumber: 6.2 Consensus size: 133
68216815 ACTGTAACTT
* ** *
68216825 CTCCGCTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTGTTACC-CTACGAC-TTAGGG
1 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACT-CCACTACAACTTTAGGG
* * * *
68216888 AGTTA--A-GGCTTGCTTAAATCTGCTTCACTGCAACTTTAGAAAGCCAAGATTCGTCGTCTTCG
65 AGCTAGGATGG-TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCG
68216950 ATTTG
129 ATTTG
* * ** *
68216955 CTCCACTGCAACTTCATGGAAACAAGATCTACAATCTTCAGCCTGTTACC-CTACGAC-TTAGGG
1 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACT-CCACTACAACTTTAGGG
* * * * * * *
68217018 AGTTA--A-GGCTTGCTTAAATCTACTTCACCGCAATTTCAAGAAGCTAAGATTCGTCGTCTTCG
65 AGCTAGGATGG-TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCG
68217080 ATTTG
129 ATTTG
*
68217085 CTCCACTGCAACTTCATGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
1 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
* * * *
68217150 GCTAGGATGGTGGGTTAAATCTGCTTCACTACAACTTCAGGAAGCCAAAATTCGTCGTTTTCGAT
66 GCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGAT
68217215 TTG
131 TTG
* *
68217218 CTCCACTGCAACTTCAGGGAGACAAGATTTACAATCTTCAGCCTACTCCACTATAACTTTAGGGA
1 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
* *
68217283 GCTAGTATGGTGGCTTAAATCTGCTTTACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGAT
66 GCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGAT
68217348 TTG
131 TTG
* *
68217351 CTCCACTACAATTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
1 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
* *
68217416 GCTAGGATGGTGGCTTAAATCTGCTTCACTACAACTTCAAGAAGCCAAGATTCGTCGTCTTCGAT
66 GCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGAT
68217481 TTG
131 TTG
*
68217484 CTCCACTGCGACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
1 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
*
68217549 GCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTTGTCTTCGAT
66 GCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGAT
*
68217614 CTG
131 TTG
*
68217617 CTCCACTGCAACTTCATGGAGACAAGATCTA
1 CTCCACTGCAACTTCAGGGAGACAAGATCTA
68217648 TAGAATCAGT
Statistics
Matches: 637, Mismatches: 51, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
129 2 0.00
130 170 0.27
131 10 0.02
133 453 0.71
134 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (133 bp):
CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
GCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGAT
TTG
Found at i:68217617 original size:45 final size:44
Alignment explanation
Indices: 68217063--68217645 Score: 186
Period size: 45 Copynumber: 13.1 Consensus size: 44
68217053 TCAAGAAGCT
* * * * *
68217063 AAGATTCGTCGTCTTCGATTTGCTCCACTGCAACTTCATGGAGAC
1 AAGA-TCGTTGTCTTCGATCTGCTCCACTACAACTTCAGGGAGCC
** * * * *
68217108 AAGATC-TACAATCTTC-AGCCTACTCCACTACAACTTTAGGGAGCT
1 AAGATCGT--TGTCTTCGA-TCTGCTCCACTACAACTTCAGGGAGCC
* * ** ** * *
68217153 AGGAT-GGTGGGTTAAATCTGCTTCACTACAACTTCAGGAAGCC
1 AAGATCGTTGTCTTCGATCTGCTCCACTACAACTTCAGGGAGCC
* * * * * *
68217196 AAAATTCGTCGTTTTCGATTTGCTCCACTGCAACTTCAGGGAGAC
1 AAGA-TCGTTGTCTTCGATCTGCTCCACTACAACTTCAGGGAGCC
* * * * *
68217241 AAGAT--TTACAATCTTC-AGCCTACTCCACTATAACTTTAGGGAG-C
1 AAGATCGTT---GTCTTCGA-TCTGCTCCACTACAACTTCAGGGAGCC
* * * ** ** * *
68217285 TAGTAT-GGTGGCTTAAATCTGCTTTACTGCAACTTCAGGAAGCC
1 AAG-ATCGTTGTCTTCGATCTGCTCCACTACAACTTCAGGGAGCC
* * * *
68217329 AAGATTCGTCGTCTTCGATTTGCTCCACTACAATTTCAGGGAGAC
1 AAGA-TCGTTGTCTTCGATCTGCTCCACTACAACTTCAGGGAGCC
** * * * *
68217374 AAGATC-TACAATCTTC-AGCCTACTCCACTACAACTTTAGGGAGCT
1 AAGATCGT--TGTCTTCGA-TCTGCTCCACTACAACTTCAGGGAGCC
* * * ** * * *
68217419 AGGAT-GGTGGCTTAAATCTGCTTCACTACAACTTCAAGAAGCC
1 AAGATCGTTGTCTTCGATCTGCTCCACTACAACTTCAGGGAGCC
* * * * *
68217462 AAGATTCGTCGTCTTCGATTTGCTCCACTGCGACTTCAGGGAGAC
1 AAGA-TCGTTGTCTTCGATCTGCTCCACTACAACTTCAGGGAGCC
** * * * *
68217507 AAGATC-TACAATCTTC-AGCCTACTCCACTACAACTTTAGGGAGCT
1 AAGATCGT--TGTCTTCGA-TCTGCTCCACTACAACTTCAGGGAGCC
* * * ** * * *
68217552 AGGAT-GGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCC
1 AAGATCGTTGTCTTCGATCTGCTCCACTACAACTTCAGGGAGCC
* * *
68217595 AAGATTCGTTGTCTTCGATCTGCTCCACTGCAACTTCATGGAGAC
1 AAGA-TCGTTGTCTTCGATCTGCTCCACTACAACTTCAGGGAGCC
68217640 AAGATC
1 AAGATC
68217646 TATAGAATCA
Statistics
Matches: 368, Mismatches: 139, Indels: 63
0.65 0.24 0.11
Matches are distributed among these distances:
42 1 0.00
43 101 0.27
44 27 0.07
45 238 0.65
46 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
AAGATCGTTGTCTTCGATCTGCTCCACTACAACTTCAGGGAGCC
Found at i:68223329 original size:131 final size:131
Alignment explanation
Indices: 68223146--68223399 Score: 305
Period size: 131 Copynumber: 1.9 Consensus size: 131
68223136 AGAGTATGGG
* * *
68223146 TGAAATTCTAAAGGAATCTTCGATCATTTTGAACAAACAGGAGATCGCAACCCAACATGATAGGG
1 TGAAATTCTAAAGGAATCTTCAATCATTTTGAACAAACAGGAAATCGCAACCCAACACGATAGGG
* ** * **
68223211 CACAATTCCCCGAATTTCCAAACATCAAACATTGCCTTCGTTTTGGAGAATTTTTAAACGCATGA
66 CACAATTCCCCGAATTGCCAAACATCAAACACCGCCTTCGTATTAAAGAATTTTTAAACGCATGA
68223276 A
131 A
* * * * * *
68223277 TGAAATTCTAAAGGGA-CATTCAATTATTTTGAACAAAC-GAGAAATTGTAACCCAGCACGTTAG
1 TGAAATTCTAAAGGAATC-TTCAATCATTTTGAACAAACAG-GAAATCGCAACCCAACACGATAG
* * * *
68223340 GGCACGATTCCGCGAATTGCCAAATATCGAACACCGCCTTCGTATTAAAGAATTTTTAAA
64 GGCACAATTCCCCGAATTGCCAAACATCAAACACCGCCTTCGTATTAAAGAATTTTTAAA
68223400 TGAATAATTG
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
130 2 0.02
131 100 0.98
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (131 bp):
TGAAATTCTAAAGGAATCTTCAATCATTTTGAACAAACAGGAAATCGCAACCCAACACGATAGGG
CACAATTCCCCGAATTGCCAAACATCAAACACCGCCTTCGTATTAAAGAATTTTTAAACGCATGA
A
Found at i:68224232 original size:2 final size:2
Alignment explanation
Indices: 68224183--68224216 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
68224173 AATGTGCTTT
68224183 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68224217 AGGAAAACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:68229919 original size:27 final size:27
Alignment explanation
Indices: 68229889--68229943 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
68229879 TCCAAGCCAA
68229889 TTTAGACTTAGCAGTTCTTCATACTTT
1 TTTAGACTTAGCAGTTCTTCATACTTT
*
68229916 TTTAGACTTAGCAGTTCTTCATGCTTT
1 TTTAGACTTAGCAGTTCTTCATACTTT
68229943 T
1 T
68229944 GTGTCAATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (27 bp):
TTTAGACTTAGCAGTTCTTCATACTTT
Found at i:68231225 original size:21 final size:22
Alignment explanation
Indices: 68231201--68231241 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
68231191 TATTACATAT
*
68231201 TTTAATTTT-AATTTTTTAAAA
1 TTTAATTTTAAAATTTTTAAAA
*
68231222 TTTATTTTTAAAATTTTTAA
1 TTTAATTTTAAAATTTTTAA
68231242 CCAGTCACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTAATTTTAAAATTTTTAAAA
Found at i:68231229 original size:13 final size:13
Alignment explanation
Indices: 68231213--68231237 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68231203 TAATTTTAAT
68231213 TTTTTAAAATTTA
1 TTTTTAAAATTTA
68231226 TTTTTAAAATTT
1 TTTTTAAAATTT
68231238 TTAACCAGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTTAAAATTTA
Found at i:68243351 original size:286 final size:286
Alignment explanation
Indices: 68242839--68243384 Score: 1013
Period size: 286 Copynumber: 1.9 Consensus size: 286
68242829 TAAAAAAAAT
* *
68242839 TTCAAAATAACAGAAAGGCCATAAGCGTAGCAGACAAGAACTTTATTCAAGAATCATATCAAGAT
1 TTCAAAATAACAAAAAGGCCATAAGCATAGCAGACAAGAACTTTATTCAAGAATCATATCAAGAT
*
68242904 ATACGAGCGAGACAAAAGTAAAATAACATGACAACTAAAACTGTAAGACATGGATCAGCTTAGCA
66 ATACGAGCGAGACAAAAGTAAAATAAAATGACAACTAAAACTGTAAGACATGGATCAGCTTAGCA
68242969 GGAAATCAATCTTTCTCTCATCTTTAAAGAAATGTCAAAGTTTACAGAAGTAGTCAATCAACTTA
131 GGAAATCAATCTTTCTCTCATCTTTAAAGAAATGTCAAAGTTTACAGAAGTAGTCAATCAACTTA
*
68243034 GCAGTCCCTAATTTTCAAGAGTAAATAATTAAAATTACAATATAAAACAGTCCCTCAAATTAGCA
196 GCAGTACCTAATTTTCAAGAGTAAATAATTAAAATTACAATATAAAACAGTCCCTCAAATTAGCA
68243099 TAAGGAACTAAATAAATAAATAAGCA
261 TAAGGAACTAAATAAATAAATAAGCA
*
68243125 TTCAAAATAACAAAAAGGTCATAAGCATAGCAGACAAGAACTTTATTCAAGAATCATATCAAGAT
1 TTCAAAATAACAAAAAGGCCATAAGCATAGCAGACAAGAACTTTATTCAAGAATCATATCAAGAT
* *
68243190 ATACGAGCGAGACAAAAAGTAAAATAAAATGATAACTAAGACTGTAAGACATGGATCAGCTTAGC
66 ATACGAGCGAGAC-AAAAGTAAAATAAAATGACAACTAAAACTGTAAGACATGGATCAGCTTAGC
68243255 AGGAAATCAATCTTTCTCTCATCTTTAAAGAAATGTCAAAGTTTACAGAAGTAGTCAATCAACTT
130 AGGAAATCAATCTTTCTCTCATCTTTAAAGAAATGTCAAAGTTTACAGAAGTAGTCAATCAACTT
68243320 AGCAG-ACCTAATTTTCAAGAGTAAATAATTAAAATTACAATATAAAACAGTCCCTCAAATTAGC
195 AGCAGTACCTAATTTTCAAGAGTAAATAATTAAAATTACAATATAAAACAGTCCCTCAAATTAGC
68243384 A
260 A
68243385 GGCGTTTTAT
Statistics
Matches: 252, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
286 134 0.53
287 118 0.47
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.25
Consensus pattern (286 bp):
TTCAAAATAACAAAAAGGCCATAAGCATAGCAGACAAGAACTTTATTCAAGAATCATATCAAGAT
ATACGAGCGAGACAAAAGTAAAATAAAATGACAACTAAAACTGTAAGACATGGATCAGCTTAGCA
GGAAATCAATCTTTCTCTCATCTTTAAAGAAATGTCAAAGTTTACAGAAGTAGTCAATCAACTTA
GCAGTACCTAATTTTCAAGAGTAAATAATTAAAATTACAATATAAAACAGTCCCTCAAATTAGCA
TAAGGAACTAAATAAATAAATAAGCA
Found at i:68251465 original size:53 final size:52
Alignment explanation
Indices: 68251305--68251509 Score: 218
Period size: 53 Copynumber: 3.8 Consensus size: 52
68251295 ATTAGGGTTT
* *
68251305 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAGGTTTC-TAAGGC
1 AAGGAT-CCATGTAAGACCATGCCAAGACATGGC-ATTGGTAAG-TTCATAAGGC
* * * *
68251359 AAGGA--AATTGTAAGACCATGTCAAGACATGACATTGATAAGTTACTATAAGGC
1 AAGGATCCA-TGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
68251412 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGAT-CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
68251465 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGAT-CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
68251510 TCAAAAGGAT
Statistics
Matches: 125, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
50 2 0.02
51 9 0.07
52 21 0.17
53 56 0.45
54 6 0.05
55 30 0.24
56 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (52 bp):
AAGGATCCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:68251769 original size:16 final size:16
Alignment explanation
Indices: 68251748--68251778 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68251738 ATAAATTTGA
68251748 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
68251764 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
68251779 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:68254785 original size:26 final size:25
Alignment explanation
Indices: 68254742--68254795 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
68254732 TTTTTTTTAG
* * * *
68254742 ATTATATTATTATTTTATTATTGTAA
1 ATTATATCATAATATTATT-TTGAAA
68254768 ATTATATCATAATATTATTTTGAAA
1 ATTATATCATAATATTATTTTGAAA
68254793 ATT
1 ATT
68254796 GCATGGTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.56
Consensus pattern (25 bp):
ATTATATCATAATATTATTTTGAAA
Found at i:68256086 original size:19 final size:15
Alignment explanation
Indices: 68256040--68256081 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
68256030 CGATGAATTT
*
68256040 ATTGAATTTATATTG
1 ATTGAAATTATATTG
68256055 ATTGAAATTATATTG
1 ATTGAAATTATATTG
68256070 ATTG-AATTATAT
1 ATTGAAATTATAT
68256082 AATATATATG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 8 0.31
15 18 0.69
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:68261763 original size:35 final size:35
Alignment explanation
Indices: 68261724--68261888 Score: 181
Period size: 35 Copynumber: 4.6 Consensus size: 35
68261714 CCATGGAAAG
68261724 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
* *
68261759 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
68261794 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGT
** * * *
68261834 T-AAAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGT
**
68261868 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
68261889 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
33 1 0.01
34 11 0.10
35 69 0.61
36 2 0.02
38 3 0.03
39 14 0.12
40 13 0.12
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
Found at i:68261876 original size:74 final size:75
Alignment explanation
Indices: 68261728--68261893 Score: 204
Period size: 74 Copynumber: 2.3 Consensus size: 75
68261718 GGAAAGTGTG
** *
68261728 AAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATCCATA
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
* **
68261788 CTGAGCTGTG
66 CCGAGCTGAA
68261798 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AAAAATGTAGGTATGGCATT-TCCCAT
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTAT-CCAT
*
68261861 ACCGAGTTGAA
65 ACCGAGCTGAA
68261872 AAATGTAGGTATGGTATT-TCAA
1 AAATGTAGGTATGGTATTATCAA
68261894 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 14 0.17
73 9 0.11
74 46 0.55
75 14 0.17
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
CCGAGCTGAA
Found at i:68269244 original size:35 final size:35
Alignment explanation
Indices: 68269205--68269369 Score: 181
Period size: 35 Copynumber: 4.6 Consensus size: 35
68269195 CCATGGAAAG
68269205 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
* *
68269240 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
68269275 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGT
** * * *
68269315 T-AAAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGT
**
68269349 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
68269370 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
33 1 0.01
34 11 0.10
35 69 0.61
36 2 0.02
38 3 0.03
39 14 0.12
40 13 0.12
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
Found at i:68269357 original size:74 final size:75
Alignment explanation
Indices: 68269209--68269374 Score: 204
Period size: 74 Copynumber: 2.3 Consensus size: 75
68269199 GGAAAGTGTG
** *
68269209 AAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATCCATA
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
* **
68269269 CTGAGCTGTG
66 CCGAGCTGAA
68269279 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AAAAATGTAGGTATGGCATT-TCCCAT
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTAT-CCAT
*
68269342 ACCGAGTTGAA
65 ACCGAGCTGAA
68269353 AAATGTAGGTATGGTATT-TCAA
1 AAATGTAGGTATGGTATTATCAA
68269375 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 14 0.17
73 9 0.11
74 46 0.55
75 14 0.17
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
CCGAGCTGAA
Found at i:68270972 original size:22 final size:23
Alignment explanation
Indices: 68270947--68270992 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
68270937 CAACCAAACC
68270947 AATTCA-ACATA-TTATCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
68270969 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
68270992 A
1 A
68270993 CGTCATTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 11 0.52
24 4 0.19
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.35
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:68270998 original size:23 final size:23
Alignment explanation
Indices: 68270954--68270998 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
68270944 ACCAATTCAA
*
68270954 CATATTATCAAGATAAATTCATG
1 CATATTATCAAGATAAAGTCATG
*
68270977 CATATTTAT-AAGATAACGTCAT
1 CATA-TTATCAAGATAAAGTCAT
68270999 TACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (23 bp):
CATATTATCAAGATAAAGTCATG
Found at i:68274547 original size:14 final size:14
Alignment explanation
Indices: 68274513--68274549 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
68274503 ATAATTTAAT
68274513 AAATAAAAATAAAA
1 AAATAAAAATAAAA
**
68274527 ATCTAAAAATAAAA
1 AAATAAAAATAAAA
68274541 AAATAAAAA
1 AAATAAAAA
68274550 ACATATAATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (14 bp):
AAATAAAAATAAAA
Found at i:68274607 original size:18 final size:18
Alignment explanation
Indices: 68274586--68274628 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
68274576 GTTAATTTGA
* *
68274586 TTAATTTGGGTAATTCGG
1 TTAATTTGAGTAATTCAG
* *
68274604 TTAATTCGATTAATTCAG
1 TTAATTTGAGTAATTCAG
68274622 TTAATTT
1 TTAATTT
68274629 TATACTTATT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.07, G:0.16, T:0.49
Consensus pattern (18 bp):
TTAATTTGAGTAATTCAG
Found at i:68274626 original size:27 final size:27
Alignment explanation
Indices: 68274569--68274627 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
68274559 TTTATATAAA
* **
68274569 TAATTCGGTTAATTTGATTAATTTGGG
1 TAATTCGGTTAATTCGATTAATTCAGG
*
68274596 TAATTCGGTTAATTCGATTAATTCAGT
1 TAATTCGGTTAATTCGATTAATTCAGG
68274623 TAATT
1 TAATT
68274628 TTATACTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.47
Consensus pattern (27 bp):
TAATTCGGTTAATTCGATTAATTCAGG
Found at i:68278611 original size:30 final size:29
Alignment explanation
Indices: 68278542--68278611 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 29
68278532 TTTTATAATT
* *
68278542 TATAACTTTATAATTTTAAAATAATTAAA
1 TATAATTTTATAAGTTTAAAATAATTAAA
68278571 TCA-AATTTTTATAAGTTTAGAAA-AATTAAAA
1 T-ATAA-TTTTATAAGTTTA-AAATAATT-AAA
68278602 TATAATTTTA
1 TATAATTTTA
68278612 CTTTTACTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
29 3 0.09
30 22 0.65
31 9 0.26
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (29 bp):
TATAATTTTATAAGTTTAAAATAATTAAA
Found at i:68279003 original size:13 final size:13
Alignment explanation
Indices: 68278987--68279037 Score: 72
Period size: 12 Copynumber: 4.1 Consensus size: 13
68278977 AATGGAAGAT
68278987 GGAAAATGGG-AAG
1 GGAAAA-GGGAAAG
68279000 GG-AAAGGGAAAG
1 GGAAAAGGGAAAG
68279012 GGAAAAGGGAAAG
1 GGAAAAGGGAAAG
68279025 GG-AAAGGGAAAG
1 GGAAAAGGGAAAG
68279037 G
1 G
68279038 AAAGGAGAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
11 3 0.08
12 19 0.53
13 14 0.39
ACGTcount: A:0.49, C:0.00, G:0.49, T:0.02
Consensus pattern (13 bp):
GGAAAAGGGAAAG
Found at i:68279008 original size:6 final size:6
Alignment explanation
Indices: 68278997--68279042 Score: 76
Period size: 6 Copynumber: 7.7 Consensus size: 6
68278987 GGAAAATGGG
68278997 AAGGGA AAGGGA AAGGGAA AAGGGA AAGGGA AAGGGA AA-GGA AAGG
1 AAGGGA AAGGGA AAGGG-A AAGGGA AAGGGA AAGGGA AAGGGA AAGG
68279043 AGAGATTGGA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.13
6 27 0.71
7 6 0.16
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (6 bp):
AAGGGA
Found at i:68279019 original size:19 final size:19
Alignment explanation
Indices: 68278997--68279035 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
68278987 GGAAAATGGG
68278997 AAGGGAAAGGGAAAGGGAA
1 AAGGGAAAGGGAAAGGGAA
68279016 AAGGGAAAGGGAAAGGGAA
1 AAGGGAAAGGGAAAGGGAA
68279035 A
1 A
68279036 GGAAAGGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (19 bp):
AAGGGAAAGGGAAAGGGAA
Found at i:68279025 original size:25 final size:25
Alignment explanation
Indices: 68278972--68279037 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
68278962 CAATTTTATG
* *
68278972 AGGGAAATGGAAGATGGAAAATGGGA
1 AGGGAAAGGGAA-AGGGAAAATGGGA
68278998 AGGGAAAGGGAAAGGGAAAA-GGGAA
1 AGGGAAAGGGAAAGGGAAAATGGG-A
68279023 AGGGAAAGGGAAAGG
1 AGGGAAAGGGAAAGG
68279038 AAAGGAGAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
24 3 0.08
25 23 0.62
26 11 0.30
ACGTcount: A:0.48, C:0.00, G:0.47, T:0.05
Consensus pattern (25 bp):
AGGGAAAGGGAAAGGGAAAATGGGA
Found at i:68279056 original size:25 final size:23
Alignment explanation
Indices: 68278997--68279042 Score: 74
Period size: 25 Copynumber: 1.9 Consensus size: 23
68278987 GGAAAATGGG
68278997 AAGGGAAAGGGAAAGGGAAAAGGGA
1 AAGGGAAAGGGAAA-GG-AAAGGGA
68279022 AAGGGAAAGGGAAAGGAAAGG
1 AAGGGAAAGGGAAAGGAAAGG
68279043 AGAGATTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 5 0.24
24 2 0.10
25 14 0.67
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (23 bp):
AAGGGAAAGGGAAAGGAAAGGGA
Found at i:68287135 original size:36 final size:37
Alignment explanation
Indices: 68287085--68287156 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 37
68287075 ATAAAGTTTC
*
68287085 GGATAACTGAGTATTGAAATTATTAT-TTCTTAGGAT
1 GGATAACTGAGTATTGAAATTAGTATATTCTTAGGAT
* *
68287121 GGATAACTTG-GTATTGTACTTAGTATATTCTTAGGA
1 GGATAAC-TGAGTATTGAAATTAGTATATTCTTAGGA
68287157 GGGCTTGTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 20 0.65
37 11 0.35
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.42
Consensus pattern (37 bp):
GGATAACTGAGTATTGAAATTAGTATATTCTTAGGAT
Found at i:68287769 original size:36 final size:36
Alignment explanation
Indices: 68287729--68287800 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
68287719 TTTTACATTG
68287729 ATTCTTTGAAAAAAAGAAAGAGTTTTTGTGTTATAT
1 ATTCTTTGAAAAAAAGAAAGAGTTTTTGTGTTATAT
68287765 ATTCTTTGAAAAAAAGAAAGAGTTTTTGTGTTATAT
1 ATTCTTTGAAAAAAAGAAAGAGTTTTTGTGTTATAT
68287801 TTGTGTATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.03, G:0.17, T:0.42
Consensus pattern (36 bp):
ATTCTTTGAAAAAAAGAAAGAGTTTTTGTGTTATAT
Found at i:68293770 original size:25 final size:23
Alignment explanation
Indices: 68293733--68293788 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 23
68293723 TAAAATGGTA
*
68293733 AAAATAATTGAAA-AAATAACAAT
1 AAAATAATAGAAAGAAATAA-AAT
68293756 GAAAATAGATAGAAATGAAATAAAAT
1 -AAAATA-ATAGAAA-GAAATAAAAT
68293782 AAAATAA
1 AAAATAA
68293789 AATAAATCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
24 7 0.25
25 12 0.43
26 3 0.11
27 6 0.21
ACGTcount: A:0.70, C:0.02, G:0.09, T:0.20
Consensus pattern (23 bp):
AAAATAATAGAAAGAAATAAAAT
Done.