Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 235 of 292
Found at i:68297133 original size:50 final size:48
Alignment explanation
Indices: 68297015--68297135 Score: 113
Period size: 50 Copynumber: 2.4 Consensus size: 48
68297005 GAGATACATA
* * *
68297015 ATATGGTAAAAAATCTATGTAATATAGTATTGAAAATATATACAATATG
1 ATAT-GTAAAAAATATATATAATATAGTATTGAAAATATATACAATAAG
*
68297064 ATAT-TAAAAGGACAAATATATAATATAGTA-TGAAAAATATATGTAC-ATAAG
1 ATATGTAAAA--A-ATATATATAATATAGTATTG-AAAATATA--TACAATAAG
68297115 ATAATGTAAAAAATATATATA
1 AT-ATGTAAAAAATATATATA
68297136 TAACTAATAA
Statistics
Matches: 59, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
47 5 0.08
49 7 0.12
50 30 0.51
51 7 0.12
52 5 0.08
53 5 0.08
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.32
Consensus pattern (48 bp):
ATATGTAAAAAATATATATAATATAGTATTGAAAATATATACAATAAG
Found at i:68297328 original size:24 final size:26
Alignment explanation
Indices: 68297299--68297361 Score: 78
Period size: 24 Copynumber: 2.5 Consensus size: 26
68297289 ATATACGAAG
*
68297299 CAATTTAAAGTAGA-TAATATA-AA-A
1 CAATTTAAAATA-ATTAATATATAACA
68297323 CAATTTAAAATAATTAATATATAACA
1 CAATTTAAAATAATTAATATATAACA
*
68297349 TAATTTAAAATAA
1 CAATTTAAAATAA
68297362 AATAAAGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 1 0.03
24 18 0.53
25 2 0.06
26 13 0.38
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (26 bp):
CAATTTAAAATAATTAATATATAACA
Found at i:68297646 original size:28 final size:28
Alignment explanation
Indices: 68297600--68297687 Score: 74
Period size: 28 Copynumber: 3.1 Consensus size: 28
68297590 AAAATAACAG
*
68297600 TATGTAAAGACTTAAAAAACAAATAATGTA
1 TATG-AAAGA-TTTAAAAACAAATAATGTA
* * *
68297630 TATGAAAGATTTAAAAATGACAGTAA-ATA
1 TATGAAAGATTTAAAAA-CA-AATAATGTA
*
68297659 TAT-AAAAATTT-AAAACAAATAATGTA
1 TATGAAAGATTTAAAAACAAATAATGTA
68297685 TAT
1 TAT
68297688 ATGTATAAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
25 4 0.09
26 6 0.13
27 4 0.09
28 14 0.30
29 11 0.23
30 8 0.17
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (28 bp):
TATGAAAGATTTAAAAACAAATAATGTA
Found at i:68299882 original size:21 final size:22
Alignment explanation
Indices: 68299849--68299891 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
68299839 TTTTAACTTG
68299849 AGAAATCAATTTTTG-ATATAAA
1 AGAAATC-ATTTTTGCATATAAA
68299871 AGAAAT-ATTTTTGCATATAAA
1 AGAAATCATTTTTGCATATAAA
68299892 TTTCTAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 7 0.35
22 6 0.30
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (22 bp):
AGAAATCATTTTTGCATATAAA
Found at i:68317359 original size:11 final size:11
Alignment explanation
Indices: 68317345--68317389 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
68317335 AGATAAATAT
68317345 TATTTTATTAA
1 TATTTTATTAA
*
68317356 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
68317369 TATTTTATTAT
1 TATTTTATTAA
68317380 TATTTTATTA
1 TATTTTATTA
68317390 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:68319570 original size:46 final size:46
Alignment explanation
Indices: 68319518--68319827 Score: 471
Period size: 46 Copynumber: 6.7 Consensus size: 46
68319508 AGTGTGCTCT
*
68319518 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCACGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
68319564 CTGATATTAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
68319610 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
68319656 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
68319702 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * ** *
68319748 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAATA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-C
* * *
68319795 C-GACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
68319828 CACTATGACA
Statistics
Matches: 245, Mismatches: 17, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
45 1 0.00
46 244 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:68321405 original size:2 final size:2
Alignment explanation
Indices: 68321398--68321432 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
68321388 TCATATCTAT
68321398 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
68321433 CAAGCAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:68326934 original size:3 final size:3
Alignment explanation
Indices: 68326855--68326995 Score: 140
Period size: 3 Copynumber: 46.0 Consensus size: 3
68326845 TTTTTGTTGT
* * * * *
68326855 TTA TTC TTA TT- TTC TTA TTAA ATA TTC TTA TTA TTTA TATA ATA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA -TTA T-TA TTA TTA
* * * * * *
68326902 GTA CTA TTA CTA TTA CTA TTG TTC TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68326950 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TGTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
68326996 GTTTATGTTT
Statistics
Matches: 114, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
2 2 0.02
3 102 0.89
4 10 0.09
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:68327227 original size:15 final size:15
Alignment explanation
Indices: 68327194--68327232 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
68327184 TTTAATGTCG
*
68327194 TATTATTATGTTTTAA
1 TATTA-TATATTTTAA
*
68327210 TATTATATATTTTCA
1 TATTATATATTTTAA
68327225 TATTATAT
1 TATTATAT
68327233 TATATACATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (15 bp):
TATTATATATTTTAA
Found at i:68340160 original size:71 final size:70
Alignment explanation
Indices: 68340032--68340169 Score: 204
Period size: 71 Copynumber: 2.0 Consensus size: 70
68340022 AATTTTTACT
* *
68340032 TTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTAAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTAAGGT-ATTTCAA
68340097 TTTATG
65 TTTATG
** * * *
68340103 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTAAT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTAAGGTATTTCAAT
68340168 TT
66 TT
68340170 CTACTTTCCA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
70 9 0.15
71 51 0.85
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (70 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTAAGGTATTTCAAT
TTATG
Found at i:68340246 original size:55 final size:54
Alignment explanation
Indices: 68340185--68340394 Score: 307
Period size: 54 Copynumber: 3.9 Consensus size: 54
68340175 TTCCAATTCC
* *
68340185 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTTTCAATTTT
1 TGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT
* *
68340240 TATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTC
1 TGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT
*
68340295 TGTTTTTC-AAAATGCAACTCATATTGCGAGAGGTGAGTTTTA-CCTTTTAATTTT
1 TGTTTTTCAAAAAT-CAACTCATATTGCGAGAGGTGAG-TTGAGCCTTTTAATTTT
* *
68340349 TGTTTTTCAAAAATCAACCCATATTGCGAGAAGTGAGTTGAGCCTT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
68340395 AGGTCATATG
Statistics
Matches: 141, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
53 8 0.06
54 67 0.48
55 66 0.47
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.39
Consensus pattern (54 bp):
TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT
Found at i:68340341 original size:54 final size:54
Alignment explanation
Indices: 68340179--68340394 Score: 301
Period size: 55 Copynumber: 4.0 Consensus size: 54
68340169 TCTACTTTCC
* * *
68340179 AATTCCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTTTC
1 AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
* *
68340234 AATTTTTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
1 AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
*
68340289 AATTTCTGTTTTTC-AAAATGCAACTCATATTGCGAGAGGTGAGTTTTA-CCTTTT
1 AATTTCTGTTTTTCAAAAAT-CAACTCATATTGCGAGAGGTGAG-TTGAGCCTTTT
* * *
68340343 AATTTTTGTTTTTCAAAAATCAACCCATATTGCGAGAAGTGAGTTGAGCCTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
68340395 AGGTCATATG
Statistics
Matches: 145, Mismatches: 12, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
53 8 0.06
54 67 0.46
55 70 0.48
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (54 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
Found at i:68341194 original size:32 final size:32
Alignment explanation
Indices: 68341140--68341200 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
68341130 CTGACCCACA
* * * *
68341140 AAACCCAATACACAGAAGCCCAAACCCCTTAC
1 AAACCCAAAACACAAAACCCCAAAACCCTTAC
*
68341172 AAACCCAAAACCCAAAACCCCAAAACCCT
1 AAACCCAAAACACAAAACCCCAAAACCCT
68341201 AATCAGCCGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 24 1.00
ACGTcount: A:0.48, C:0.43, G:0.03, T:0.07
Consensus pattern (32 bp):
AAACCCAAAACACAAAACCCCAAAACCCTTAC
Found at i:68342323 original size:3 final size:3
Alignment explanation
Indices: 68342244--68342378 Score: 119
Period size: 3 Copynumber: 44.0 Consensus size: 3
68342234 TTTTTGTTGT
* * * * *
68342244 TTA TTC TTA TT- TTC TTA TTAA ATA TTC TTA TTA TTTA TATA ATA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA -TTA T-TA TTA TTA
* * * * * *
68342291 GTA CTA TTA CTA TTA CTA TTG TTC TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
68342339 CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TGTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
68342379 GTTTATGTTT
Statistics
Matches: 106, Mismatches: 21, Indels: 10
0.77 0.15 0.07
Matches are distributed among these distances:
2 2 0.02
3 94 0.89
4 10 0.09
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:68342409 original size:19 final size:21
Alignment explanation
Indices: 68342387--68342435 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
68342377 TAGTTTATGT
68342387 TTTATTATAC-AAT-TATATA
1 TTTATTATACGAATATATATA
* *
68342406 TTTATAATACGTATATATATA
1 TTTATTATACGAATATATATA
*
68342427 CTTATTATA
1 TTTATTATA
68342436 GTTGTATGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 9 0.38
20 2 0.08
21 13 0.54
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.51
Consensus pattern (21 bp):
TTTATTATACGAATATATATA
Found at i:68342610 original size:15 final size:15
Alignment explanation
Indices: 68342577--68342615 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
68342567 TTTAATGTCG
*
68342577 TATTATTATGTTTTAA
1 TATTA-TATATTTTAA
*
68342593 TATTATATATTTTCA
1 TATTATATATTTTAA
68342608 TATTATAT
1 TATTATAT
68342616 TATATACATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (15 bp):
TATTATATATTTTAA
Found at i:68344233 original size:45 final size:45
Alignment explanation
Indices: 68344182--68344271 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
68344172 TCGTACTAGT
68344182 ATATTGCATATTGTATAACTTCAATCATAGGTGAAATTAAAATAA
1 ATATTGCATATTGTATAACTTCAATCATAGGTGAAATTAAAATAA
68344227 ATATTGCATATTGTATAACTTCAATCATAGGTGAAATTAAAATAA
1 ATATTGCATATTGTATAACTTCAATCATAGGTGAAATTAAAATAA
68344272 TCCATGCTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.44, C:0.09, G:0.11, T:0.36
Consensus pattern (45 bp):
ATATTGCATATTGTATAACTTCAATCATAGGTGAAATTAAAATAA
Found at i:68348184 original size:25 final size:25
Alignment explanation
Indices: 68348155--68348206 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
68348145 AGCATTCCGA
*
68348155 TATATTGCCCTCT-CGAGCTTCCCGT
1 TATATGGCCCT-TGCGAGCTTCCCGT
**
68348180 TATATGGTTCTTGCGAGCTTCCCGT
1 TATATGGCCCTTGCGAGCTTCCCGT
68348205 TA
1 TA
68348207 ATATCTCTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.38
Consensus pattern (25 bp):
TATATGGCCCTTGCGAGCTTCCCGT
Found at i:68348220 original size:24 final size:24
Alignment explanation
Indices: 68348168--68348221 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
68348158 ATTGCCCTCT
* *
68348168 CGAGCTTCCCGTTATATGGTTCTTG
1 CGAGCTTCCCGTTATAT-GCTCTTC
68348193 CGAGCTTCCCGTTAATAT-CTCTTC
1 CGAGCTTCCCGTT-ATATGCTCTTC
68348217 CGAGC
1 CGAGC
68348222 ATCCTGATCG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 9 0.35
25 13 0.50
26 4 0.15
ACGTcount: A:0.15, C:0.30, G:0.20, T:0.35
Consensus pattern (24 bp):
CGAGCTTCCCGTTATATGCTCTTC
Found at i:68348517 original size:25 final size:25
Alignment explanation
Indices: 68348407--68348517 Score: 72
Period size: 25 Copynumber: 4.5 Consensus size: 25
68348397 CGGAGCTACT
*
68348407 CGTTAT-TGGCTCGCATGAGCTT-C
1 CGTTATATGGCTCACATGAGCTTCC
* *
68348430 C-TAATTATGGCTC-CTATAAGCTTCC
1 CGTTA-TATGGCTCAC-ATGAGCTTCC
* * * *
68348455 CGTTATATAGCCTAAAAT-AGCTTCT
1 CGTTATAT-GGCTCACATGAGCTTCC
*
68348480 CGTTACAAT-GCTCACATGAGCTTCC
1 CGTTA-TATGGCTCACATGAGCTTCC
68348505 CGTTATATGGCTC
1 CGTTATATGGCTC
68348518 GAAAGAGAAA
Statistics
Matches: 65, Mismatches: 13, Indels: 18
0.68 0.14 0.19
Matches are distributed among these distances:
22 2 0.03
23 3 0.05
24 20 0.31
25 31 0.48
26 9 0.14
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (25 bp):
CGTTATATGGCTCACATGAGCTTCC
Found at i:68352145 original size:19 final size:19
Alignment explanation
Indices: 68352094--68352147 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
68352084 CTTCCAAGAT
68352094 CCACACGGGCTGGCCATTC
1 CCACACGGGCTGGCCATTC
** *
68352113 CCACATAGGTTGGCCATTC
1 CCACACGGGCTGGCCATTC
68352132 CCACACGGGCTGGCCA
1 CCACACGGGCTGGCCA
68352148 CACACCCATG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.19, C:0.39, G:0.26, T:0.17
Consensus pattern (19 bp):
CCACACGGGCTGGCCATTC
Found at i:68355050 original size:2 final size:2
Alignment explanation
Indices: 68355014--68355038 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
68355004 TCATGTTAGT
68355014 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
68355039 TATTTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:68355173 original size:19 final size:19
Alignment explanation
Indices: 68355132--68355173 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
68355122 ATAGATTAGA
*
68355132 TAAATTAACACTTACTAAT
1 TAAATTAACACTTACTAAG
*
68355151 TAAATTAAGACTTGA-TAAG
1 TAAATTAACACTT-ACTAAG
68355170 TAAA
1 TAAA
68355174 ATTTCATGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 19 0.95
20 1 0.05
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (19 bp):
TAAATTAACACTTACTAAG
Found at i:68358414 original size:20 final size:21
Alignment explanation
Indices: 68358376--68358415 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68358366 GATATTATAT
68358376 TTTTATAATTGAATAGAAAAG
1 TTTTATAATTGAATAGAAAAG
*
68358397 TTTTATAATT-ATTAGAAAA
1 TTTTATAATTGAATAGAAAA
68358416 CCATAATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (21 bp):
TTTTATAATTGAATAGAAAAG
Found at i:68360845 original size:24 final size:24
Alignment explanation
Indices: 68360789--68360851 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
68360779 TTTCTCATCT
*
68360789 TCTTCATCTTCACCTCGACCCTCA
1 TCTTCATCTTCATCTCGACCCTCA
*
68360813 TAC-ACATCTTCATCTCGACCCTCA
1 T-CTTCATCTTCATCTCGACCCTCA
* *
68360837 TCTTTATCTTTATCT
1 TCTTCATCTTCATCT
68360852 TCACCCCCGT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
23 1 0.03
24 30 0.94
25 1 0.03
ACGTcount: A:0.19, C:0.38, G:0.03, T:0.40
Consensus pattern (24 bp):
TCTTCATCTTCATCTCGACCCTCA
Found at i:68363418 original size:18 final size:18
Alignment explanation
Indices: 68363395--68363449 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
68363385 CGAATAAAAC
*
68363395 TTGAGAAAATTGAGAGAG
1 TTGAGAGAATTGAGAGAG
68363413 TTGAGAGAATT-A-AGAG
1 TTGAGAGAATTGAGAGAG
68363429 TTTAGAGAGAATTGAGAGAG
1 -TT-GAGAGAATTGAGAGAG
68363449 T
1 T
68363450 AAGATTTGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
16 4 0.12
17 3 0.09
18 19 0.59
19 2 0.06
20 4 0.12
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.25
Consensus pattern (18 bp):
TTGAGAGAATTGAGAGAG
Found at i:68363428 original size:9 final size:9
Alignment explanation
Indices: 68363395--68363447 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
68363385 CGAATAAAAC
*
68363395 TTGAGAAAA
1 TTGAGAGAA
*
68363404 TTGAGAGAG
1 TTGAGAGAA
68363413 TTGAGAGAA
1 TTGAGAGAA
* *
68363422 TTAAGAG-T
1 TTGAGAGAA
68363430 TTAGAGAGAA
1 TT-GAGAGAA
68363440 TTGAGAGA
1 TTGAGAGA
68363448 GTAAGATTTG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
8 2 0.06
9 31 0.89
10 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (9 bp):
TTGAGAGAA
Found at i:68364188 original size:33 final size:30
Alignment explanation
Indices: 68364130--68364189 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
68364120 AATAGCAAAT
*
68364130 TAAGTTTATAAAAACTATAATATTTTAGCA
1 TAAGTTTATAAAAACTATAACATTTTAGCA
*
68364160 TAAGTGTTATAAAAATTATTAAACATTTTA
1 TAAGT-TTATAAAAACTA-T-AACATTTTA
68364190 TAAAACTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.20
31 11 0.44
32 1 0.04
33 8 0.32
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.42
Consensus pattern (30 bp):
TAAGTTTATAAAAACTATAACATTTTAGCA
Found at i:68365996 original size:107 final size:106
Alignment explanation
Indices: 68365748--68366044 Score: 293
Period size: 107 Copynumber: 2.8 Consensus size: 106
68365738 TAAATAATTA
* * * * *
68365748 TATTCATTTAGTATTATTAATCTTATGTATTTATGTGTCTGAATTTTATTTT-TCTCATAATTTA
1 TATTCATTTAGTATT-TTAATCTGATGAATTTATGTGTTTAAATTTTATTTTAT-TCACAATTTA
* * *
68365812 ATCTA--TTTTT-ATTTTAATATCGTATATATTTCACGTGTTT
64 ATTTATTTTTTTCATTTTAATATCATATATATTTCACGTGTTG
* * *
68365852 TATTTATTTAGTA--TTAATTTGATGTAATTGCTGTGTGTTTAAATTTTATTTTATTCACAATTT
1 TATTCATTTAGTATTTTAATCTGATG-AATT--TATGTGTTTAAATTTTATTTTATTCACAATTT
*
68365915 AATTTATTTTTTTCATTTTAATATCATACTA-ATTTCATGTGTTG
63 AATTTATTTTTTTCATTTTAATATCATA-TATATTTCACGTGTTG
* ** * * *
68365959 TATTCATTTAGTATTCTTAATCTGATGCATTTATGTGTTTAAATTTCGTTTTACTCACAAGTTAG
1 TATTCATTTAGTATT-TTAATCTGATGAATTTATGTGTTTAAATTTTATTTTATTCACAATTTAA
*
68366024 TCTAAATTTTTTTCATTTTAA
65 T-T-TATTTTTTTCATTTTAA
68366045 GATTGAAATA
Statistics
Matches: 158, Mismatches: 22, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
101 9 0.06
102 3 0.02
104 43 0.27
105 1 0.01
106 5 0.03
107 65 0.41
108 3 0.02
109 19 0.12
110 10 0.06
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.56
Consensus pattern (106 bp):
TATTCATTTAGTATTTTAATCTGATGAATTTATGTGTTTAAATTTTATTTTATTCACAATTTAAT
TTATTTTTTTCATTTTAATATCATATATATTTCACGTGTTG
Found at i:68366614 original size:23 final size:24
Alignment explanation
Indices: 68366584--68366628 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
68366574 GCTTTTGTTC
68366584 GAATCATTATATTGA-TCAATTCT
1 GAATCATTATATTGATTCAATTCT
68366607 GAATCATTATATTGATTCAATT
1 GAATCATTATATTGATTCAATT
68366629 TAGTTCTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44
Consensus pattern (24 bp):
GAATCATTATATTGATTCAATTCT
Found at i:68366750 original size:21 final size:21
Alignment explanation
Indices: 68366726--68366767 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
68366716 AGGACTAAAG
68366726 TAAACAAAAAAGTTTAAATAC
1 TAAACAAAAAAGTTTAAATAC
68366747 TAAACAAAAAAGTTTAAATAC
1 TAAACAAAAAAGTTTAAATAC
68366768 CAAAATAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.62, C:0.10, G:0.05, T:0.24
Consensus pattern (21 bp):
TAAACAAAAAAGTTTAAATAC
Found at i:68367055 original size:25 final size:25
Alignment explanation
Indices: 68367027--68367075 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
68367017 TATTATTTTT
68367027 AATTTAATAT-TTAATAATTTTATAC
1 AATTTAATATATTAA-AATTTTATAC
* *
68367052 AATTTTATTTATTAAAATTTTATA
1 AATTTAATATATTAAAATTTTATA
68367076 TATAGTCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
AATTTAATATATTAAAATTTTATAC
Found at i:68368559 original size:18 final size:18
Alignment explanation
Indices: 68368536--68368570 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68368526 TTTTTTATAT
68368536 TTTTAGCATTTCTTTTAA
1 TTTTAGCATTTCTTTTAA
* *
68368554 TTTTAGGATTTTTTTTA
1 TTTTAGCATTTCTTTTA
68368571 TTTCAAAGGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.06, G:0.09, T:0.66
Consensus pattern (18 bp):
TTTTAGCATTTCTTTTAA
Found at i:68370255 original size:18 final size:18
Alignment explanation
Indices: 68370228--68370280 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
68370218 AAAAATTAAT
68370228 TTAAATTTAATATGCACAA
1 TTAAA-TTAATATGCACAA
*
68370247 TTAAATTAATATGTACAA
1 TTAAATTAATATGCACAA
**
68370265 TTATTTTAATATGCAC
1 TTAAATTAATATGCAC
68370281 GTTATTATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 25 0.83
19 5 0.17
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.42
Consensus pattern (18 bp):
TTAAATTAATATGCACAA
Found at i:68370291 original size:18 final size:19
Alignment explanation
Indices: 68370234--68370291 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 19
68370224 TAATTTAAAT
*
68370234 TTAATATGCACAATTA-AA
1 TTAATATGCACAATTATTA
*
68370252 TTAATATGTACAATTATT-
1 TTAATATGCACAATTATTA
*
68370270 TTAATATGCAC-GTTATTA
1 TTAATATGCACAATTATTA
68370288 TTAA
1 TTAA
68370292 ATTAAATTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
17 5 0.15
18 29 0.85
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (19 bp):
TTAATATGCACAATTATTA
Found at i:68370487 original size:25 final size:24
Alignment explanation
Indices: 68370439--68370487 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
68370429 ACATTGTTTC
* *
68370439 TAAATTTAAAATTTTTAATCTATT
1 TAAAATTAAAATTTTTAATATATT
68370463 TAAAATTAAAATTTTTAAATATATT
1 TAAAATTAAAATTTTT-AATATATT
68370488 ATATGTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TAAAATTAAAATTTTTAATATATT
Found at i:68372537 original size:2 final size:2
Alignment explanation
Indices: 68372530--68372570 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
68372520 GTCAGTTCTT
68372530 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
68372571 CAATTCATTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:68385623 original size:15 final size:16
Alignment explanation
Indices: 68385585--68385632 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 16
68385575 TAGCCCCCCT
*
68385585 CTCTCCTTTCCCCTCTC
1 CTCTCCTTT-CTCTCTC
68385602 C-CTCCTTTCTCT-TC
1 CTCTCCTTTCTCTCTC
68385616 CTCTCCTTTCTTCTCTC
1 CTCTCCTTTC-TCTCTC
68385633 TTTTTTTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 3 0.11
15 11 0.41
16 10 0.37
17 3 0.11
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (16 bp):
CTCTCCTTTCTCTCTC
Found at i:68390373 original size:15 final size:14
Alignment explanation
Indices: 68390355--68390390 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
68390345 TTTTGTTGTT
68390355 TTTTTTTGCTGGAAA
1 TTTTTTTGCT-GAAA
68390370 TTTTTTTGCTGAAA
1 TTTTTTTGCTGAAA
68390384 TTTTTTT
1 TTTTTTT
68390391 TTGCTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (14 bp):
TTTTTTTGCTGAAA
Found at i:68390392 original size:16 final size:17
Alignment explanation
Indices: 68390353--68390395 Score: 65
Period size: 15 Copynumber: 2.7 Consensus size: 17
68390343 TTTTTTGTTG
68390353 TTTTTTTTTGCTGGAAA
1 TTTTTTTTTGCTGGAAA
68390370 --TTTTTTTGCT-GAAA
1 TTTTTTTTTGCTGGAAA
68390384 TTTTTTTTTGCT
1 TTTTTTTTTGCT
68390396 CTTTTTTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.17
15 10 0.42
16 10 0.42
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.65
Consensus pattern (17 bp):
TTTTTTTTTGCTGGAAA
Found at i:68390713 original size:30 final size:30
Alignment explanation
Indices: 68390621--68390734 Score: 105
Period size: 30 Copynumber: 3.9 Consensus size: 30
68390611 TAATTTTTAT
68390621 AAAA-TTTAA-GGTTAAAATGTAATTTAAGG
1 AAAAGTTTAAGGGTTAAAATGTAATTT-AGG
* * *
68390650 -AAAGTTTAGGGGTCT-AAGTG-AATTTA-A
1 AAAAGTTTAAGGGT-TAAAATGTAATTTAGG
*
68390677 AGAAAGTTTAAGGGTTAAAATGAAATTTAGG
1 A-AAAGTTTAAGGGTTAAAATGTAATTTAGG
* *
68390708 AAAAGTTTAGGGGTCAAAATGTAATTT
1 AAAAGTTTAAGGGTTAAAATGTAATTT
68390735 TTATTTTTTG
Statistics
Matches: 68, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
28 5 0.07
29 25 0.37
30 36 0.53
31 2 0.03
ACGTcount: A:0.43, C:0.02, G:0.23, T:0.32
Consensus pattern (30 bp):
AAAAGTTTAAGGGTTAAAATGTAATTTAGG
Found at i:68390748 original size:22 final size:22
Alignment explanation
Indices: 68390723--68390772 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
68390713 TTTAGGGGTC
68390723 AAAATGTAATTTTTATTTTTTG
1 AAAATGTAATTTTTATTTTTTG
* ** *
68390745 AAAATTTTTTTTTTTATTTTTTT
1 AAAA-TGTAATTTTTATTTTTTG
68390768 AAAAT
1 AAAAT
68390773 TTTGAAAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (22 bp):
AAAATGTAATTTTTATTTTTTG
Found at i:68390775 original size:22 final size:23
Alignment explanation
Indices: 68390732--68390775 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
68390722 CAAAATGTAA
68390732 TTTTTATTTTTTGAAAATTTTTT
1 TTTTTATTTTTTGAAAATTTTTT
*
68390755 TTTTTATTTTTTTAAAATTTT
1 TTTTTATTTTTTGAAAATTTT
68390776 GAAAATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (23 bp):
TTTTTATTTTTTGAAAATTTTTT
Found at i:68391485 original size:16 final size:17
Alignment explanation
Indices: 68391406--68391485 Score: 60
Period size: 17 Copynumber: 4.7 Consensus size: 17
68391396 AATAATATAA
68391406 AATAATA-ATATGTACAT
1 AATAATATATATGTA-AT
* * *
68391423 AAAAATACATATAT-AT
1 AATAATATATATGTAAT
*
68391439 ATATATATATATATGCATAT
1 A-ATA-ATATATATGTA-AT
68391459 AATAA-ATATATGTAAT
1 AATAATATATATGTAAT
68391475 AATAATA-ATAT
1 AATAATATATAT
68391486 CTACAATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
16 14 0.28
17 17 0.34
18 13 0.26
19 3 0.06
20 3 0.06
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (17 bp):
AATAATATATATGTAAT
Found at i:68391582 original size:2 final size:2
Alignment explanation
Indices: 68391575--68391600 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
68391565 GATATGTACA
68391575 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
68391601 TGTACATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68392341 original size:14 final size:16
Alignment explanation
Indices: 68392307--68392347 Score: 59
Period size: 14 Copynumber: 2.7 Consensus size: 16
68392297 TTTTTGTTGT
68392307 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
*
68392323 ATTTTTTTGCT-G-AA
1 TTTTTTTTGCTGGAAA
68392337 TTTTTTTTGCT
1 TTTTTTTTGCT
68392348 CTTTTTTCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 12 0.52
15 1 0.04
16 10 0.43
ACGTcount: A:0.15, C:0.07, G:0.15, T:0.63
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:68392603 original size:29 final size:30
Alignment explanation
Indices: 68392557--68392685 Score: 122
Period size: 29 Copynumber: 4.4 Consensus size: 30
68392547 TTTTGGGGCT
* *
68392557 AAATGTAATTTTTA-GAAAATTT-AGGGTTA
1 AAATGTAA-TTTAAGGAAAATTTAAGGGTCA
* *
68392586 AAATGTAATTTAAGGAAAGTTTAAGGGTCT
1 AAATGTAATTTAAGGAAAATTTAAGGGTCA
* * *
68392616 AAGTG-AATTTAAAGAAAGTTTAAGGGTCA
1 AAATGTAATTTAAGGAAAATTTAAGGGTCA
* *
68392645 AAATGAAATTT-AGGAAAAGTTTAGGGGTCA
1 AAATGTAATTTAAGGAAAA-TTTAAGGGTCA
*
68392675 AAATGCAATTT
1 AAATGTAATTT
68392686 TTATTTTTTG
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
28 4 0.05
29 46 0.55
30 34 0.40
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.33
Consensus pattern (30 bp):
AAATGTAATTTAAGGAAAATTTAAGGGTCA
Found at i:68392710 original size:24 final size:24
Alignment explanation
Indices: 68392682--68392727 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
68392672 TCAAAATGCA
68392682 ATTTTTATTTTTTGAAAATTTTTT
1 ATTTTTATTTTTTGAAAATTTTTT
*
68392706 ATTTTTATTTTTTTAAAATTTT
1 ATTTTTATTTTTTGAAAATTTT
68392728 GAAAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (24 bp):
ATTTTTATTTTTTGAAAATTTTTT
Found at i:68393558 original size:32 final size:35
Alignment explanation
Indices: 68393522--68393586 Score: 93
Period size: 32 Copynumber: 1.9 Consensus size: 35
68393512 AATATTCCTA
68393522 ATATATATTGTA-TATGT-T-TATTTA-TATTATGT
1 ATATATATT-TAGTATGTATATATTTAGTATTATGT
68393554 ATATATATTTAGTATGTATATATTTAGTATTAT
1 ATATATATTTAGTATGTATATATTTAGTATTAT
68393587 TATGTCTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
31 2 0.07
32 14 0.48
33 1 0.03
34 6 0.21
35 6 0.21
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (35 bp):
ATATATATTTAGTATGTATATATTTAGTATTATGT
Found at i:68393575 original size:15 final size:15
Alignment explanation
Indices: 68393555--68393583 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
68393545 ATATTATGTA
68393555 TATATATTTAGTATG
1 TATATATTTAGTATG
68393570 TATATATTTAGTAT
1 TATATATTTAGTAT
68393584 TATTATGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (15 bp):
TATATATTTAGTATG
Found at i:68393591 original size:21 final size:19
Alignment explanation
Indices: 68393530--68393599 Score: 63
Period size: 21 Copynumber: 3.6 Consensus size: 19
68393520 TAATATATAT
*
68393530 TGTATATGTTTATTTATATTA
1 TGTATATATTTA-TT-TATTA
*
68393551 TGTATATA--TATTTAGTA
1 TGTATATATTTATTTATTA
68393568 TGTATATATTTAGTATTATTA
1 TGTATATATTTA-T-TTATTA
*
68393589 TGTCTATATTT
1 TGTATATATTT
68393600 TTCATTCCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
17 12 0.29
18 2 0.05
19 4 0.10
20 1 0.02
21 22 0.54
ACGTcount: A:0.30, C:0.01, G:0.10, T:0.59
Consensus pattern (19 bp):
TGTATATATTTATTTATTA
Found at i:68393925 original size:15 final size:15
Alignment explanation
Indices: 68393905--68393934 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
68393895 GTTATAAATA
*
68393905 GTTATTTTTTTTAAT
1 GTTATTATTTTTAAT
68393920 GTTATTATTTTTAAT
1 GTTATTATTTTTAAT
68393935 ATGTATAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (15 bp):
GTTATTATTTTTAAT
Found at i:68401233 original size:17 final size:17
Alignment explanation
Indices: 68401211--68401245 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
68401201 AACATTCAAG
68401211 TTAATGATATAATTTTA
1 TTAATGATATAATTTTA
68401228 TTAATGATATAATTTTA
1 TTAATGATATAATTTTA
68401245 T
1 T
68401246 CTTTATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
TTAATGATATAATTTTA
Found at i:68403380 original size:14 final size:13
Alignment explanation
Indices: 68403363--68403409 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 13
68403353 AAATAGAAAT
68403363 TAAAAAATCAAAAA
1 TAAAAAA-CAAAAA
68403377 T--AAAACAAAAA
1 TAAAAAACAAAAA
*
68403388 TAAAAACACACAAA
1 TAAAAA-ACAAAAA
68403402 TAAAAAAC
1 TAAAAAAC
68403410 CCAAAATCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
11 7 0.24
12 4 0.14
13 5 0.17
14 13 0.45
ACGTcount: A:0.77, C:0.13, G:0.00, T:0.11
Consensus pattern (13 bp):
TAAAAAACAAAAA
Found at i:68406731 original size:15 final size:15
Alignment explanation
Indices: 68406713--68406766 Score: 99
Period size: 15 Copynumber: 3.5 Consensus size: 15
68406703 AAAAGAGCAA
68406713 AAAAAAAATTCCAGC
1 AAAAAAAATTCCAGC
68406728 AAAAAAAATTCCAGC
1 AAAAAAAATTCCAGC
68406743 AAAAAAAATTTCCAGC
1 AAAAAAAA-TTCCAGC
68406759 AAAAAAAA
1 AAAAAAAA
68406767 ACCAAAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 23 0.61
16 15 0.39
ACGTcount: A:0.65, C:0.17, G:0.06, T:0.13
Consensus pattern (15 bp):
AAAAAAAATTCCAGC
Found at i:68406731 original size:16 final size:16
Alignment explanation
Indices: 68406712--68406767 Score: 96
Period size: 16 Copynumber: 3.6 Consensus size: 16
68406702 AAAAAGAGCA
68406712 AAAAAAAAATTCCAGC
1 AAAAAAAAATTCCAGC
68406728 -AAAAAAAATTCCAGC
1 AAAAAAAAATTCCAGC
*
68406743 AAAAAAAATTTCCAGC
1 AAAAAAAAATTCCAGC
68406759 AAAAAAAAA
1 AAAAAAAAA
68406768 CCAAAAAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.41
16 22 0.59
ACGTcount: A:0.66, C:0.16, G:0.05, T:0.12
Consensus pattern (16 bp):
AAAAAAAAATTCCAGC
Found at i:68410210 original size:24 final size:24
Alignment explanation
Indices: 68410167--68410216 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
68410157 TTCCTTTCTT
68410167 TTGCATTCATTCCATACATTTGCA
1 TTGCATTCATTCCATACATTTGCA
*
68410191 TTGCATTGCATTGCAT-CATTTGCA
1 TTGCATT-CATTCCATACATTTGCA
68410215 TT
1 TT
68410217 AAACTTTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (24 bp):
TTGCATTCATTCCATACATTTGCA
Found at i:68417681 original size:72 final size:74
Alignment explanation
Indices: 68417572--68417756 Score: 293
Period size: 72 Copynumber: 2.5 Consensus size: 74
68417562 TTATTTCTGC
*
68417572 TTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTAATTTCAA
1 TTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTAAGGTAATTTCAA
*
68417637 TTTCTG-TT
66 TATCTGCTT
* *
68417645 TTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAA
1 TTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTAAGGTAATTTCAA
68417709 TATCTGCTT
66 TATCTGCTT
* **
68417718 TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGC
68417757 TCATATTGCG
Statistics
Matches: 103, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
72 63 0.61
73 8 0.08
74 32 0.31
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (74 bp):
TTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTAAGGTAATTTCAA
TATCTGCTT
Found at i:68417759 original size:25 final size:25
Alignment explanation
Indices: 68417731--68417781 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
68417721 AAAAAATCAA
68417731 CTCATATTGCGAGAGGTGAGTTGAG
1 CTCATATTGCGAGAGGTGAGTTGAG
68417756 CTCATATTGCGAGAGGTGAGTTGAG
1 CTCATATTGCGAGAGGTGAGTTGAG
68417781 C
1 C
68417782 CTCAAGACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.27
Consensus pattern (25 bp):
CTCATATTGCGAGAGGTGAGTTGAG
Found at i:68418183 original size:79 final size:77
Alignment explanation
Indices: 68417831--68419336 Score: 943
Period size: 72 Copynumber: 18.8 Consensus size: 77
68417821 TATGTTTTTC
** * *
68417831 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
68417896 TG-TTTTC----
66 TGTTTTTCAAAA
* ** * * *
68417903 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
68417968 TG-TTTTC----
66 TGTTTTTCAAAA
* ** * *
68417975 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTCA-TTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTCAATTT
68418039 CTGTTTTT-----
65 CTGTTTTTCAAAA
* ** * * *
68418047 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCTTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
68418112 TGTTTTTCAAAAAA
66 TGTTTTTC--AAAA
* ** * * *
68418126 AAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* *
68418191 TATCTTTCAAAAA
66 TGTTTTTC-AAAA
*
68418204 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* *
68418269 T-ATTGTC--AA
66 TGTTTTTCAAAA
* * *
68418278 AAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTTACACGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
* **
68418343 TCCATTTTTTAATTTCTGCCTTTCAA
64 T-C----TGT--TTT-T--C--AAAA
* * * *
68418369 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCA
**
68418433 ATTTCTGCCTTTC--AA
61 ATTTCTGTTTTTCAAAA
* * * *
68418448 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA--TTTTCAA
* *
68418513 TTTATATTTTTC--AA
62 TTTCTGTTTTTCAAAA
* * * * *
68418527 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCTGGTCAAATG-TCGAGGTATTTTCAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTTC---
**
68418591 ATCTATTTTCAAT-TTCTGTTCGTCAA
60 A---A-TTTC--TGTT-T-TTC-AAAA
* ** *
68418617 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTTGCTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTATTTTCAATT
* **
68418682 TATGTTCGTC----
64 TCTGTTTTTCAAAA
* * ** * * *
68418692 AAAAATCAACTCATATTGTC-AGAGGTGAGTTGAGTCTCGGGCCACATACCGAGGTCTTTTCAAA
1 AAAAATCAACTCATATTG-CGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAAT
68418756 TTCTGTTTTTAATTTCTATTTTTCAAAAA
63 TTCTG---TT--TTTC-A------AA--A
* * *
68418785 AAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCT-TGGCTTACACGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
**
68418849 TTCTGTTCGTC----
63 TTCTGTTTTTCAAAA
* * * * * *
68418860 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTC-AAT
* *
68418925 TCTATTTTTAATTTCTATTTTTCAAA
63 T-T-CTGTT--TTTC-A------AAA
* * *
68418951 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCATACGCCGAGGTATTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTA-TTTTCAAT
68419016 TTCTGTTTTTCAAAAA
63 TTCTGTTTTTC-AAAA
* * * * *
68419032 AAAAATCAACTCATATTGCGAGAGATGAGTTGATG-CTCGAGTCACGCGCCGAGGTATTTTTTAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGA-GCCTC-AG-GACACGCTGAGGTA-TTTTCAA
*
68419096 TTTCTATTTTTC--AA
62 TTTCTGTTTTTCAAAA
* *
68419110 AAAAATCAACTCATATTAG-GAGAGGTGAGTTGAGCCTCA-AATCACGCACTGAGGTATTTTTAA
1 AAAAATCAACTCATATT-GCGAGAGGTGAGTTGAGCCTCAGGA-CACG--CTGAGGTATTTTCAA
68419173 TTTCTGTTTTTCAAAAAA
62 TTTCTGTTTTTC--AAAA
* * * * *
68419191 AAAAATCAACTAATATTGCGAGAGATGAGTTGAACCTCGGGTCACACGCCGAGGTATTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTA-TTTTCAAT
68419256 TTCTGTTTTTCAAAA
63 TTCTGTTTTTCAAAA
*
68419271 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
68419336 T
64 T
68419337 TTTTGGCTTT
Statistics
Matches: 1174, Mismatches: 146, Indels: 221
0.76 0.09 0.14
Matches are distributed among these distances:
71 1 0.00
72 201 0.17
73 5 0.00
74 41 0.03
75 104 0.09
76 31 0.03
77 74 0.06
78 113 0.10
79 140 0.12
80 62 0.05
81 110 0.09
82 23 0.02
83 9 0.01
84 7 0.01
85 4 0.00
86 4 0.00
87 10 0.01
88 3 0.00
89 3 0.00
90 55 0.05
91 55 0.05
92 10 0.01
93 109 0.09
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (77 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAAAA
Found at i:68418476 original size:77 final size:79
Alignment explanation
Indices: 68418346--68419380 Score: 370
Period size: 79 Copynumber: 12.7 Consensus size: 79
68418336 TTCAATTTCC
* * *
68418346 ATTTTTTAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTT-G
1 ATTTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCA
* * *
68418410 GCTCACGCGCTGAGCT
64 GATCACACACTGAGCT
*
68418426 A-TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAG-CTTCAGA
1 ATTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAGA
*
68418489 TCACACACTGAGGT
66 TCACACACTGAGCT
* *** * * *
68418503 ATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCC-TCTG
1 A-TTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAG
* * *
68418567 GTCA-A-ATGTCGAGGT
65 ATCACACA-CT-GAGCT
* ** ** *
68418582 ATTTTCAAAATCTATTTTCAATTTCTGTTCGTCAAAAAAATCAACTCATATTGCAAGAGGTGAGT
1 ATTTT-----TC-AATTTC--TGCCT-TTC-AAAAAAA--TCAACTCATATTGCGAGAGGTGAGT
* * * *
68418647 TGAGCCTT-TGCTCACACGCTGAGGT
54 TGAGCCTTCAGATCACACACTGAGCT
* *
68418672 A-TTTTCAATTTATG--TTCGTC--AAAAATCAACTCATATTGTC-AGAGGTGAGTTGAGTC-TC
1 ATTTTTCAATTTCTGCCTT--TCAAAAAAATCAACTCATATTG-CGAGAGGTGAGTTGAGCCTTC
* ** * *
68418730 GGGCCACATACCGAGGTCTTTT
63 AGATCACACACTGA-G-C---T
* *** * *
68418752 CAAATTCTGTTTTTAATTTCTATTTTTCAAAAAAAAAATTAACTCATATTGTGAGAGGTGAGTTG
1 ---A---T-TTTTCAATTTCTGCCTTTCAAAAAA---ATCAACTCATATTGCGAGAGGTGAGTTG
* * * * *
68418817 AGCCTT-GGCTTACACGCTGAGGT
56 AGCCTTCAGATCACACACTGAGCT
* * *
68418840 A-TTTTCAATTTCTG--TTCGTC--AAAAATCAACTCATATTGCGAGAGATGAGTTGAGTC-TCG
1 ATTTTTCAATTTCTGCCTT--TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCA
** ** *
68418899 GGCCACATGCCGAGGTCTTTT
64 GATCACACACTGA-G-C---T
* *** *
68418920 CAAATTCTATTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAG
1 ---A---T-TTTTCAATTTCTGCCTTTCAAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * * * *
68418985 CC-TCAGGTCATACGCCGAGGT
58 CCTTCAGATCACACACTGAGCT
** *
68419006 ATTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGATG-C-T
1 ATTTTTCAATTTCTGCCTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA-GCCTT
* * * *
68419069 C-GAGTCACGCGCCGAGGT
62 CAGA-TCACACACTGAGCT
* *** *
68419087 ATTTTTTAATTTCTATTTTTCAAAAAAATCAACTCATATTAG-GAGAGGTGAGTTGAGCC-TCAA
1 ATTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATT-GCGAGAGGTGAGTTGAGCCTTCAG
* *
68419150 ATCACGCACTGAGGT
65 ATCACACACTGAGCT
** * * *
68419165 ATTTTT-AATTTCTGTTTTTCAAAAAAAAAAATCAACTAATATTGCGAGAGATGAGTTGAACC-T
1 ATTTTTCAATTTCTGCCTTTC----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
* * * * *
68419228 CGGGTCACACGCCGAGGT
62 CAGATCACACACTGAGCT
** *
68419246 ATTTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCC-TCA
1 ATTTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCA
* * *
68419310 GGTCACACGCTGAGGT
64 GATCACACACTGAGCT
* * ***
68419326 A-TTTTCAATTTTTTTGGCTTTTTTAAAAATCAACTCATAATT-CGAGAGGTGAGTT
1 ATTTTTCAA--TTTCTGCCTTTCAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTT
68419381 AAACTCTGGG
Statistics
Matches: 759, Mismatches: 111, Indels: 171
0.73 0.11 0.16
Matches are distributed among these distances:
74 2 0.00
75 73 0.10
76 6 0.01
77 67 0.09
78 66 0.09
79 132 0.17
80 79 0.10
81 125 0.16
82 18 0.02
83 9 0.01
84 6 0.01
85 1 0.00
86 4 0.01
87 3 0.00
88 31 0.04
89 3 0.00
90 49 0.06
91 47 0.06
92 1 0.00
93 36 0.05
94 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (79 bp):
ATTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAGA
TCACACACTGAGCT
Found at i:68418505 original size:170 final size:168
Alignment explanation
Indices: 68418194--68418507 Score: 436
Period size: 170 Copynumber: 1.9 Consensus size: 168
68418184 CAATTTTTAT
*
68418194 CTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
1 CTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAA
* * *
68418259 TTTCAATTTCTATTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTTACA
66 TTTCAATTTCTATTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACA
*
68418324 CGCCGAGGTATTTTCAATTTCCATTTTTTAATTTCTGC
131 CACCGAGGTATTTTCAATTTCCATTTTTTAATTTCTGC
* * *
68418362 CTTTC-AAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGC
1 CTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGC
* * * * *
68418425 TATTTTCAATTTCTGCCTT-TCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCTTCAGA
63 TAATTTCAATTTCT--ATTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGA
*
68418489 TCACACACTGAGGTATTTT
126 TCACACACCGAGGTATTTT
68418508 TTCAATTTAT
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
166 2 0.02
167 40 0.31
168 5 0.04
169 22 0.17
170 56 0.44
171 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (168 bp):
CTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAA
TTTCAATTTCTATTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACA
CACCGAGGTATTTTCAATTTCCATTTTTTAATTTCTGC
Found at i:68418652 original size:246 final size:241
Alignment explanation
Indices: 68418202--68418725 Score: 655
Period size: 246 Copynumber: 2.1 Consensus size: 241
68418192 ATCTTTCAAA
* * *
68418202 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGCACACACTGAGGTAATTTCAATT
* ** * *
68418267 TCTATTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTTACACGCCGAGG
66 TATATTGTCAAAAAAATCAACTCACATTGCGAGAGGCGAGTTGAGCCTCAGGTCAAACGCCGAGG
** * * *
68418332 TATTTTCAATTTCCATTTTTTAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGT
131 TATTTTCAAAATCCATTTTTCAATTTCTG-CTTTC-AAAAAAAATCAACTCATATTGCAAGAGGT
* *
68418397 GAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGCCTT-TC
194 GAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAATTTATG--TTCTC
* *
68418446 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAG--CACACACTGAGGTA--ATTTC
* * * * * *
68418511 AATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCTGGTCAAATGT
62 AATTTATA-TTGTCAAAAAAATCAACTCACATTGCGAGAGGCGAGTTGAGCCTCAGGTCAAACGC
*
68418576 CGAGGTATTTTCAAAATCTA-TTTTCAATTTCTG-TTCGTC-AAAAAAATCAACTCATATTGCAA
126 CGAGGTATTTTCAAAATCCATTTTTCAATTTCTGCTT--TCAAAAAAAATCAACTCATATTGCAA
* *
68418638 GAGGTGAGTTGAGCCTTTGCTCACACGCTGAGGTATTTTCAATTTATGTTCGTC
189 GAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAATTTATGTTC-TC
*
68418692 --AAAAATCAACTCATATTGTCAGAGGTGAGTTGAG
1 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAG
68418726 TCTCGGGCCA
Statistics
Matches: 244, Mismatches: 27, Indels: 18
0.84 0.09 0.06
Matches are distributed among these distances:
244 75 0.31
246 81 0.33
248 25 0.10
249 63 0.26
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32
Consensus pattern (241 bp):
AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGCACACACTGAGGTAATTTCAATT
TATATTGTCAAAAAAATCAACTCACATTGCGAGAGGCGAGTTGAGCCTCAGGTCAAACGCCGAGG
TATTTTCAAAATCCATTTTTCAATTTCTGCTTTCAAAAAAAATCAACTCATATTGCAAGAGGTGA
GTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAATTTATGTTCTC
Found at i:68418746 original size:75 final size:76
Alignment explanation
Indices: 68418594--68418754 Score: 202
Period size: 75 Copynumber: 2.1 Consensus size: 76
68418584 TTTCAAAATC
* **
68418594 TATTTTCAATTTCTGTTCGTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTTGCT
1 TATTTTCAATTTATGTTCGTC-AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTGGGCT
* *
68418659 CACACGCTGAGG
65 CACACACCGAGG
*
68418671 TATTTTCAATTTATGTTCGTC-AAAAATCAACTCATATTGTC-AGAGGTGAGTTGAGTCTCGGGC
1 TATTTTCAATTTATGTTCGTCAAAAAATCAACTCATATTG-CAAGAGGTGAGTTGAGCCT-GGGC
*
68418734 -CACATACCGAGG
64 TCACACACCGAGG
*
68418746 TCTTTTCAA
1 TATTTTCAA
68418755 ATTCTGTTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
75 51 0.69
76 3 0.04
77 20 0.27
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (76 bp):
TATTTTCAATTTATGTTCGTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTGGGCTC
ACACACCGAGG
Found at i:68418837 original size:168 final size:167
Alignment explanation
Indices: 68418424--68419380 Score: 793
Period size: 168 Copynumber: 5.8 Consensus size: 167
68418414 ACGCGCTGAG
* *** *
68418424 CTATTTTCAATTTCTGCCTTTC-AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAG-CTTCA
1 CTATTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTT-G
* * * ** * *
68418487 GATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATG
65 GCTCACACGCTGAGGTA-TTTTTCAATTTATGTTCGTC--AAAAATCAACTCATATTGCGAGAGG
* * * * * * *
68418552 TGAGTTGAGCCTCTGGTCAAATGTCGAGGTATTTTCAAAAT
127 TGAGTTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATT
* * ** ** *
68418593 CTATTTTCAATTTCTGTTCGTC-AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTTG
1 CTATTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGG
68418657 CTCACACGCTGAGGTA-TTTTCAATTTATGTTCGTCAAAAATCAACTCATATTGTC-AGAGGTGA
66 CTCACACGCTGAGGTATTTTTCAATTTATGTTCGTCAAAAATCAACTCATATTG-CGAGAGGTGA
*
68418720 GTTGAGTCTCGGGCCACATACCGAGGTCTTTTCAAATT
130 GTTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATT
* *
68418758 CTGTTTTTAATTTCTATTTTTCAAAAAAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTT
1 CTATTTTTAATTTCTATTTTTC--AAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTT
* * *
68418823 GGCTTACACGCTGAGGTA-TTTTCAATTTCTGTTCGTCAAAAATCAACTCATATTGCGAGAGATG
64 GGCTCACACGCTGAGGTATTTTTCAATTTATGTTCGTCAAAAATCAACTCATATTGCGAGAGGTG
68418887 AGTTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATT
129 AGTTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATT
*
68418926 CTATTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAG
1 CTATTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT-TG
* * * **
68418991 G-TCATACGCCGAGGTATTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGA
65 GCTCACACGCTGAGGTATTTTTCAATTTATGTTCGTC-----AAAAATCAACTCATATTGCGAGA
* * * **
68419055 GATGAGTTGA-TGCTCGAGTCACGCGCCGAGG-----T---A--
125 GGTGAGTTGAGT-CTCGGGCCACATGCCGAGGTCTTTTCAAATT
**
68419088 -T-TTTTTAATTTCTATTTTTC-AAAAAAATCAACTCATATTAG-GAGAGGTGAGTTGAGCCTCA
1 CTATTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATT-GTGAGAGGTGAGTTGAGCCTTG
** * * * ** *
68419149 AATCACGCACTGAGGTATTTTT-AATTTCTGTTTTTCAAAAAAAAAAATCAACTAATATTGCGAG
65 GCTCACACGCTGAGGTATTTTTCAATTTATGTTCGTC------AAAAATCAACTCATATTGCGAG
* ** * *
68419213 AGATGAGTTGAACCTCGGGTCACACGCCGAGG-----T---A--
124 AGGTGAGTTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATT
* * * * *
68419247 -T-TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCA
1 CTATTTTTAATTTCTATTTTTC-AAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT-T
* ** *
68419310 GG-TCACACGCTGAGGTA-TTTTCAATTTTTTTGGCTTTTTTAAAAATCAACTCATAATT-CGAG
64 GGCTCACACGCTGAGGTATTTTTCAA--TTTAT-G-TTCGTCAAAAATCAACTCAT-ATTGCGAG
68419372 AGGTGAGTT
124 AGGTGAGTT
68419381 AAACTCTGGG
Statistics
Matches: 690, Mismatches: 70, Indels: 66
0.84 0.08 0.08
Matches are distributed among these distances:
158 14 0.02
159 152 0.22
160 28 0.04
161 52 0.08
163 4 0.01
164 2 0.00
165 76 0.11
166 52 0.08
167 37 0.05
168 154 0.22
169 67 0.10
170 3 0.00
171 1 0.00
172 48 0.07
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (167 bp):
CTATTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGG
CTCACACGCTGAGGTATTTTTCAATTTATGTTCGTCAAAAATCAACTCATATTGCGAGAGGTGAG
TTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATT
Found at i:68418914 original size:75 final size:75
Alignment explanation
Indices: 68418785--68418927 Score: 180
Period size: 75 Copynumber: 1.9 Consensus size: 75
68418775 TTTTCAAAAA
* * * * * * *
68418785 AAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTTACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTGGGCTCACACGCCGAGGTATTTTCAAAT
68418850 TCTGTTCGTC
66 TCTGTTCGTC
* * *
68418860 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGTCTCGGGC-CACATGCCGAGGTCTTTTCAAA
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCT-GGGCTCACACGCCGAGGTATTTTCAAA
68418924 TTCT
65 TTCT
68418928 ATTTTTAATT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
75 54 0.95
76 3 0.05
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.32
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTGGGCTCACACGCCGAGGTATTTTCAAAT
TCTGTTCGTC
Found at i:68419036 original size:81 final size:80
Alignment explanation
Indices: 68418927--68419336 Score: 541
Period size: 81 Copynumber: 5.2 Consensus size: 80
68418917 TTTCAAATTC
* *
68418927 TATTTTT-AATTTCTATTTTTC-AAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCA
1 TATTTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
68418990 GGTCATACGCCGAGG
66 GGTCACACGCCGAGG
*
68419005 TATTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGATG-CT
1 TATTTTTCAATTTCTGTTTTTC-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA-GCCT
*
68419069 C-GAGTCACGCGCCGAGG
64 CAG-GTCACACGCCGAGG
* *
68419086 TATTTTTTAATTTCTATTTTTC--AAAAAAATCAACTCATATTAG-GAGAGGTGAGTTGAGCCTC
1 TATTTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATT-GCGAGAGGTGAGTTGAGCCTC
** * * *
68419148 AAATCACGCACTGAGG
65 AGGTCACACGCCGAGG
* * *
68419164 TATTTTT-AATTTCTGTTTTTCAAAAAAAAAAATCAACTAATATTGCGAGAGATGAGTTGAACCT
1 TATTTTTCAATTTCTGTTTTTC--AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
68419228 CGGGTCACACGCCGAGG
64 CAGGTCACACGCCGAGG
*
68419245 TATTTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCA
1 TATTTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
68419310 GGTCACACGCTGAGG
66 GGTCACACGCCGAGG
68419325 TA-TTTTCAATTT
1 TATTTTTCAATTT
68419337 TTTTGGCTTT
Statistics
Matches: 290, Mismatches: 28, Indels: 27
0.84 0.08 0.08
Matches are distributed among these distances:
77 14 0.05
78 60 0.21
79 24 0.08
80 56 0.19
81 121 0.42
82 15 0.05
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (80 bp):
TATTTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
GGTCACACGCCGAGG
Found at i:68419142 original size:159 final size:160
Alignment explanation
Indices: 68418929--68419336 Score: 612
Period size: 159 Copynumber: 2.5 Consensus size: 160
68418919 TCAAATTCTA
*
68418929 TTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTC
1 TTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
*
68418994 ATACGCCGAGGTATTTTTCAATTTCTGTTTTTC-AAAAAAAAAATCAACTCATATTGCGAGAGAT
66 A-ACGCCGAGGTATTTTTCAATTTCTGTTTTTCAAAAAAAAAAATCAACTAATATTGCGAGAGAT
** *
68419058 GAGTTGATGCTCGAGTCACGCGCCGAGGTAT
130 GAGTTGAACCTCGAGTCACACGCCGAGGTAT
**
68419089 TTTTTAATTTCTATTTTTC-AAAAAAATCAACTCATATTAG-GAGAGGTGAGTTGAGCCTCAAAT
1 TTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATT-GCGAGAGGTGAGTTGAGCCTCAGGT
68419152 C-ACGCACTGAGGTATTTTT-AATTTCTGTTTTTCAAAAAAAAAAATCAACTAATATTGCGAGAG
65 CAACGC-C-GAGGTATTTTTCAATTTCTGTTTTTCAAAAAAAAAAATCAACTAATATTGCGAGAG
*
68419215 ATGAGTTGAACCTCGGGTCACACGCCGAGGTAT
128 ATGAGTTGAACCTCGAGTCACACGCCGAGGTAT
* * *
68419248 TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGT
1 TTTTTAATTTCTATTTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
*
68419313 CACACGCTGAGGTA-TTTTCAATTT
65 CA-ACGCCGAGGTATTTTTCAATTT
68419337 TTTTGGCTTT
Statistics
Matches: 225, Mismatches: 13, Indels: 19
0.88 0.05 0.07
Matches are distributed among these distances:
157 4 0.02
158 15 0.07
159 126 0.56
160 25 0.11
161 51 0.23
163 4 0.02
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (160 bp):
TTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
AACGCCGAGGTATTTTTCAATTTCTGTTTTTCAAAAAAAAAAATCAACTAATATTGCGAGAGATG
AGTTGAACCTCGAGTCACACGCCGAGGTAT
Found at i:68419356 original size:240 final size:237
Alignment explanation
Indices: 68418927--68419380 Score: 632
Period size: 240 Copynumber: 1.9 Consensus size: 237
68418917 TTTCAAATTC
* * * *
68418927 TATTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG
1 TATTTTTAATTTCTATTTTTCAAAAAAAATCAACTAATATTGCGAGAGATGAGTTGAACCTCAGG
*
68418992 TCATACGCCGAGGTATTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGA
66 TCACACGCCGAGGTATTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGA
* * *
68419057 TGAGTTGATGCTCGAGTCACGCGCCGAGGTATTTTTTAATTTCTATTTTTCAAAAAAATCAACTC
131 TGAGTTGAAGCTCGAGTCACACGCCGAGGTATTTTTCAATTTCTATTTTTCAAAAAAATCAACTC
*
68419122 AT-ATTAGGAGAGGTGAGTTGAGCCTCAAATCACGCACTGAGG
196 ATAATT-CGAGAGGTGAGTTGAGCCTCAAATCACGCACTGAGG
*
68419164 TATTTTTAATTTCTGTTTTTCAAAAAAAAAAATCAACTAATATTGCGAGAGATGAGTTGAACCTC
1 TATTTTTAATTTCTATTTTTC---AAAAAAAATCAACTAATATTGCGAGAGATGAGTTGAACCTC
*
68419229 GGGTCACACGCCGAGGTATTTTTCAATTTCTGTTTTTC-AAAAAAAAATCAACTCATATTGCGAG
63 AGGTCACACGCCGAGGTATTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAG
* * * ***
68419293 AGGTGAGTT-AAGCCTC-AGGTCACACGCTGAGGTA-TTTTCAATTT-TTTTGGCTTTTTTAAAA
128 AGATGAGTTGAAG-CTCGA-GTCACACGCCGAGGTATTTTTCAATTTCTATT---TTTCAAAAAA
68419354 ATCAACTCATAATTCGAGAGGTGAGTT
188 ATCAACTCATAATTCGAGAGGTGAGTT
68419381 AAACTCTGGG
Statistics
Matches: 191, Mismatches: 17, Indels: 15
0.86 0.08 0.07
Matches are distributed among these distances:
237 23 0.12
238 12 0.06
239 51 0.27
240 102 0.53
241 3 0.02
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (237 bp):
TATTTTTAATTTCTATTTTTCAAAAAAAATCAACTAATATTGCGAGAGATGAGTTGAACCTCAGG
TCACACGCCGAGGTATTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGA
TGAGTTGAAGCTCGAGTCACACGCCGAGGTATTTTTCAATTTCTATTTTTCAAAAAAATCAACTC
ATAATTCGAGAGGTGAGTTGAGCCTCAAATCACGCACTGAGG
Found at i:68419374 original size:79 final size:76
Alignment explanation
Indices: 68418927--68419424 Score: 422
Period size: 81 Copynumber: 6.3 Consensus size: 76
68418917 TTTCAAATTC
* * *
68418927 TATTTTT-AATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAG
1 TATTTTTCAATTTCTGTTTTT--AAAAAAATCAACTCATATTGCGAGAGGTGAGTT-AACCTCAG
*
68418991 GTCATACGCCGAGG
63 GTCACACGCCGAGG
* **
68419005 TATTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGATGCTC
1 TATTTTTCAATTTCTGTTTTT----AAAAAAATCAACTCATATTGCGAGAGGTGAGTT-AACCTC
*
68419070 -GAGTCACGCGCCGAGG
61 AG-GTCACACGCCGAGG
* * * *
68419086 TATTTTTTAATTTCTATTTTTCAAAAAAATCAACTCATATTAG-GAGAGGTGAGTTGAGCCTCAA
1 TATTTTTCAATTTCTGTTTTT-AAAAAAATCAACTCATATT-GCGAGAGGTGAGTT-AACCTCAG
* * * *
68419150 ATCACGCACTGAGG
63 GTCACACGCCGAGG
* *
68419164 TATTTTT-AATTTCTGTTTTTCAAAAAAAAAAATCAACTAATATTGCGAGAGATGAGTTGAACCT
1 TATTTTTCAATTTCTGTTTTT-----AAAAAAATCAACTCATATTGCGAGAGGTGAGTT-AACCT
*
68419228 CGGGTCACACGCCGAGG
60 CAGGTCACACGCCGAGG
68419245 TATTTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCA
1 TATTTTTCAATTTCTGTTTTT---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAA-CCTCA
*
68419310 GGTCACACGCTGAGG
62 GGTCACACGCCGAGG
* * *
68419325 TA-TTTTCAATTTTTTTGGCTTTTT-TAAAAATCAACTCATAATT-CGAGAGGTGAGTTAAACTC
1 TATTTTTCAA--TTTCT-G-TTTTTAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTAACCTC
* *
68419387 TGGGT-AGCATC-CCGAGC
61 -AGGTCA-CA-CGCCGAGG
68419404 TA-TTTTCAATTTCTTGTTTTT
1 TATTTTTCAATTTC-TGTTTTT
68419425 CAATAAAGAA
Statistics
Matches: 357, Mismatches: 41, Indels: 46
0.80 0.09 0.10
Matches are distributed among these distances:
76 5 0.01
77 16 0.04
78 65 0.18
79 69 0.19
80 59 0.17
81 124 0.35
82 14 0.04
83 5 0.01
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (76 bp):
TATTTTTCAATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAACCTCAGGTC
ACACGCCGAGG
Found at i:68419402 original size:159 final size:158
Alignment explanation
Indices: 68418927--68419427 Score: 565
Period size: 159 Copynumber: 3.2 Consensus size: 158
68418917 TTTCAAATTC
68418927 TATTTTT-AATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAG
1 TATTTTTCAATTTCTATTTTTCAAAAAAAATCAACTCATATTG-GAGAGGTGAGTTGAGCCTCAG
* *
68418991 GTCATACGCCGAGGTATTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAG
65 GTCACACGCTGAGGTA-TTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAG
** * *
68419056 ATGAGTTGATGCTC-GAGTCACGC-GCCGAGG
129 ATGAGTT-AAACTCTGGGTCA-GCACCCGAGG
* *
68419086 TATTTTTTAATTTCTATTTTTC-AAAAAAATCAACTCATATTAGGAGAGGTGAGTTGAGCCTCAA
1 TATTTTTCAATTTCTATTTTTCAAAAAAAATCAACTCATATT-GGAGAGGTGAGTTGAGCCTCAG
* * * * *
68419150 ATCACGCACTGAGGTATTTTTAATTTCTGTTTTTCAAAAAAAAAAATCAACTAATATTGCGAGAG
65 GTCACACGCTGAGGTATTTTCAATTTCTGTTTTTC-AAAAAAAAAATCAACTCATATTGCGAGAG
*
68419215 ATGAGTTGAAC-CTCGGGTCA-CACGCCGAGG
129 ATGAGTTAAACTCT-GGGTCAGCAC-CCGAGG
* *
68419245 TATTTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCA
1 TATTTTTCAATTTCTATTTTTC-AAAAAAAATCAACTCATATTG-GAGAGGTGAGTTGAGCCTCA
** *****
68419310 GGTCACACGCTGAGGTATTTTCAATTT-T-TTTGGCTTTTTTAAAAATCAACTCATAATT-CGAG
64 GGTCACACGCTGAGGTATTTTCAATTTCTGTTTTTC-AAAAAAAAAATCAACTCAT-ATTGCGAG
* *
68419372 AGGTGAGTTAAACTCTGGGT-AGCATCCCGAGC
127 AGATGAGTTAAACTCTGGGTCAGCA-CCCGAGG
*
68419404 TA-TTTTCAATTTCTTGTTTTTCAA
1 TATTTTTCAATTTC-TATTTTTCAA
68419428 TAAAGAATAA
Statistics
Matches: 294, Mismatches: 33, Indels: 31
0.82 0.09 0.09
Matches are distributed among these distances:
157 2 0.01
158 33 0.11
159 176 0.60
160 23 0.08
161 60 0.20
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (158 bp):
TATTTTTCAATTTCTATTTTTCAAAAAAAATCAACTCATATTGGAGAGGTGAGTTGAGCCTCAGG
TCACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGAT
GAGTTAAACTCTGGGTCAGCACCCGAGG
Found at i:68419930 original size:15 final size:14
Alignment explanation
Indices: 68419913--68419962 Score: 75
Period size: 14 Copynumber: 3.5 Consensus size: 14
68419903 AAAGAGCAAA
68419913 AAAAAAATTTCAGC
1 AAAAAAATTTCAGC
68419927 AAAAAAA-TTCTAGC
1 AAAAAAATTTC-AGC
68419941 AAAAAAATTTCCAGC
1 AAAAAAATTT-CAGC
68419956 AAAAAAA
1 AAAAAAA
68419963 AACTAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
13 3 0.09
14 17 0.52
15 12 0.36
16 1 0.03
ACGTcount: A:0.62, C:0.14, G:0.06, T:0.18
Consensus pattern (14 bp):
AAAAAAATTTCAGC
Found at i:68419973 original size:29 final size:28
Alignment explanation
Indices: 68419910--68419973 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
68419900 AAAAAAGAGC
**
68419910 AAAAAAAAAATTTCAGCAAAAAAATTCT
1 AAAAAAAAAATTTCAGCAAAAAAAAACT
**
68419938 AGCAAAAAAATTTCCAGCAAAAAAAAACT
1 AAAAAAAAAATTT-CAGCAAAAAAAAACT
68419967 AAAAAAA
1 AAAAAAA
68419974 GGAACATTCA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
28 11 0.38
29 18 0.62
ACGTcount: A:0.67, C:0.12, G:0.05, T:0.16
Consensus pattern (28 bp):
AAAAAAAAAATTTCAGCAAAAAAAAACT
Found at i:68420538 original size:15 final size:16
Alignment explanation
Indices: 68420505--68420538 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
68420495 TTTTATTTGT
68420505 AATTGGTCTAAACAAA
1 AATTGGTCTAAACAAA
*
68420521 AATTGGTCTTAA-AAA
1 AATTGGTCTAAACAAA
68420536 AAT
1 AAT
68420539 AAAAAAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (16 bp):
AATTGGTCTAAACAAA
Found at i:68420803 original size:17 final size:17
Alignment explanation
Indices: 68420745--68420805 Score: 51
Period size: 17 Copynumber: 3.8 Consensus size: 17
68420735 CGAATTTAAT
68420745 ATATATATATTTT-T--
1 ATATATATATTTTGTAC
* *
68420759 ATA-ACTATATTATATAC
1 ATATA-TATATTTTGTAC
68420776 ATATATATATTTTGTAC
1 ATATATATATTTTGTAC
68420793 ATATCAT-TATTTT
1 ATAT-ATATATTTT
68420806 ATATTATTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
13 1 0.03
14 10 0.26
15 1 0.03
17 23 0.61
18 3 0.08
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.54
Consensus pattern (17 bp):
ATATATATATTTTGTAC
Found at i:68420953 original size:3 final size:3
Alignment explanation
Indices: 68420945--68420981 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
68420935 TTTATGTACA
68420945 TAT TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
68420982 CCAAATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:68420957 original size:23 final size:23
Alignment explanation
Indices: 68420878--68420981 Score: 81
Period size: 23 Copynumber: 4.3 Consensus size: 23
68420868 TTATTGTAGA
68420878 TATTATTATTATTA-CATACTT-T
1 TATTATTATTATTATCATA-TTAT
*
68420900 TATT-TTATATATATATATATATATAT
1 TATTATTAT-TAT-TAT-CATAT-TAT
*
68420926 GTATGTATTTTTATGTA-CATATTAT
1 -TAT-TATTATTAT-TATCATATTAT
*
68420951 TATTATTATTATTATTATATTAT
1 TATTATTATTATTATCATATTAT
68420974 TATTATTA
1 TATTATTA
68420982 CCAAATATAT
Statistics
Matches: 66, Mismatches: 6, Indels: 19
0.73 0.07 0.21
Matches are distributed among these distances:
21 4 0.06
22 9 0.14
23 25 0.38
24 4 0.06
25 7 0.11
26 5 0.08
27 3 0.05
28 6 0.09
29 3 0.05
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.60
Consensus pattern (23 bp):
TATTATTATTATTATCATATTAT
Found at i:68420971 original size:14 final size:14
Alignment explanation
Indices: 68420877--68420981 Score: 67
Period size: 14 Copynumber: 7.1 Consensus size: 14
68420867 TTTATTGTAG
68420877 ATATTATTATTATT
1 ATATTATTATTATT
68420891 ACATACTT-TTATT-TT
1 --ATA-TTATTATTATT
68420906 ATA-TATATATATATAT
1 ATATTAT-TAT-TAT-T
68420922 ATATGTATGTATT-TT
1 ATAT-TAT-TATTATT
*
68420937 -TATGTACATATTATT
1 ATAT-TA-TTATTATT
68420952 ATTATTATTATTATT
1 A-TATTATTATTATT
68420967 ATATTATTATTATT
1 ATATTATTATTATT
68420981 A
1 A
68420982 CCAAATATAT
Statistics
Matches: 74, Mismatches: 3, Indels: 26
0.72 0.03 0.25
Matches are distributed among these distances:
11 1 0.01
12 1 0.01
13 6 0.08
14 25 0.34
15 14 0.19
16 15 0.20
17 6 0.08
18 6 0.08
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (14 bp):
ATATTATTATTATT
Found at i:68428375 original size:23 final size:26
Alignment explanation
Indices: 68428320--68428375 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
68428310 ATCAATTGTG
68428320 TTATTCTTTCTATCTAAATAATTATCT
1 TTATTCTTTCTATC-AAATAATTATCT
* *
68428347 TGATTCTTTCT-TC-AATCATTAT-T
1 TTATTCTTTCTATCAAATAATTATCT
68428370 TTATTC
1 TTATTC
68428376 ATAAACATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 6 0.23
24 8 0.31
26 2 0.08
27 10 0.38
ACGTcount: A:0.25, C:0.16, G:0.02, T:0.57
Consensus pattern (26 bp):
TTATTCTTTCTATCAAATAATTATCT
Found at i:68428419 original size:25 final size:25
Alignment explanation
Indices: 68428385--68428438 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
68428375 CATAAACATA
68428385 TCATACAAAGCAATAATTACCAAAT
1 TCATACAAAGCAATAATTACCAAAT
*
68428410 TCATACAAAGTAATAATTACCAAAT
1 TCATACAAAGCAATAATTACCAAAT
68428435 TCAT
1 TCAT
68428439 TCATTCTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.50, C:0.19, G:0.04, T:0.28
Consensus pattern (25 bp):
TCATACAAAGCAATAATTACCAAAT
Found at i:68432098 original size:54 final size:55
Alignment explanation
Indices: 68431935--68432098 Score: 174
Period size: 54 Copynumber: 3.0 Consensus size: 55
68431925 AGGGAATGAA
* * * * *
68431935 GCCAAAGTGAAAACTCACAAAAGGTGCTTTGAGACTTCTTAA-AATAAAAAAAAATGG
1 GCCAAAGTGAAAACCCACAAAGGGAGCTTTGAGAC-TC-CAATAATAAAAAGAAA-GG
* * * **
68431992 GCCAAAGTGAAAACCCGCAAAGGGTA-CTTTGGGACTCGAATAA-AAATGGAAAGG
1 GCCAAAGTGAAAACCCACAAAGGG-AGCTTTGAGACTCCAATAATAAAAAGAAAGG
68432046 GCCAAAGTGAAAACCCACAAAGGGAGCTTTGAGAC-CCAATAATAAAAAGAAAG
1 GCCAAAGTGAAAACCCACAAAGGGAGCTTTGAGACTCCAATAATAAAAAGAAAG
68432099 AAAAAGATAA
Statistics
Matches: 89, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
53 7 0.08
54 41 0.46
55 8 0.09
56 4 0.04
57 29 0.33
ACGTcount: A:0.46, C:0.16, G:0.22, T:0.16
Consensus pattern (55 bp):
GCCAAAGTGAAAACCCACAAAGGGAGCTTTGAGACTCCAATAATAAAAAGAAAGG
Found at i:68433522 original size:180 final size:179
Alignment explanation
Indices: 68433203--68434008 Score: 921
Period size: 180 Copynumber: 4.5 Consensus size: 179
68433193 ACATTGGTAA
* * * * * ***
68433203 AAATTGAAGATCTTATTTCCCTGAAGTTGCAGTGGAGTAGATCTTTGGAGATGG-TGAATCTTAT
1 AAATTGAAGATTTTATCTCCCTGAAGTTACAGCGGAGCAGATCTTCACAGATGGCT-AATCTTAT
** * * *
68433267 CTCCATGTATCGATAATGGAGCAGATTTTA-CCACCAAGCCTTATCTCTCTAAGGTAGCAAGAGA
65 CTCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAAGCCTTATCTCTCTGAGGTAGCAAGAGA
* *
68433331 GTAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAATGAAGCAGACTG
130 GCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAA-GAAGCAGACTG
*
68433382 AGAATTAAAGATTTTATCTCCCTGAAGTTACAGCGGAGCAGATCTTCACAGATGGCTAATCTTAT
1 A-AATTGAAGATTTTATCTCCCTGAAGTTACAGCGGAGCAGATCTTCACAGATGGCTAATCTTAT
*
68433447 CTCCATGTATCGGCAATGGAGCAGATTTAAGCC-TTAAGCCTTATCTCTCTGAGGTAGCAAGAGA
65 CTCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAAGCCTTATCTCTCTGAGGTAGCAAGAGA
* *
68433511 GCAAGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTG
130 GCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAG-AAGCAGACTG
* * * * * *
68433562 AAGATTGAAGGTTTTATCTCCCTAAACAG-T--AGTGGAGCAAATC--GA-AGACGG-TGAATCT
1 AA-ATTGAAGATTTTATCTCCCT-GA-AGTTACAGCGGAGCAGATCTTCACAGATGGCT-AATCT
* * *
68433620 TATCTCCGTGTATCGGCAATGGAGCAGATTTTA-CCACTAA-CCTCATCTCTCTGAGGTAGCAAG
62 TATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAAGCCTTATCTCTCTGAGGTAGCAAG
* *
68433683 AGAGCAAGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACCG
127 AGAGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGC-AAGAAGCAGACTG
* * * *
68433737 AAGATTGAAGATTCTATCTCCCTGAAGTTGCAGGGGAGCAGATCTTCACAGATGGCTAATATTAT
1 AA-ATTGAAGATTTTATCTCCCTGAAGTTACAGCGGAGCAGATCTTCACAGATGGCTAATCTTAT
* * *
68433802 CTCTATGTATCGGCAATGGAGCAGATTTAAGCC-TTAAGCCTTATCTCTCTGAAGTAGCAAGAGA
65 CTCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAAGCCTTATCTCTCTGAGGTAGCAAGAGA
* * * *
68433866 GCAGGTTGAAGAATGAGTCTCATCTTCTTGAGGTAGCAAGGAAGCAGGCTG
130 GCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAA-GAAGCAGACTG
* *** * *
68433917 AGAATTGAAGATTTTATCTCCCT-AAG-TAGTAGCGGAGCAGA---TCGGGGATGACAAATCTTA
1 A-AATTGAAGATTTTATCTCCCTGAAGTTA-CAGCGGAGCAGATCTTCACAGATGGCTAATCTTA
*
68433977 TCTTCATGTA-CTGGCAATGGAGCAGATTTAAG
64 TCTCCATGTATC-GGCAATGGAGCAGATTTAAG
68434009 TCACCAGTCC
Statistics
Matches: 540, Mismatches: 64, Indels: 49
0.83 0.10 0.08
Matches are distributed among these distances:
173 2 0.00
174 2 0.00
175 93 0.17
176 99 0.18
177 1 0.00
178 2 0.00
179 71 0.13
180 262 0.49
181 6 0.01
182 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (179 bp):
AAATTGAAGATTTTATCTCCCTGAAGTTACAGCGGAGCAGATCTTCACAGATGGCTAATCTTATC
TCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAAGCCTTATCTCTCTGAGGTAGCAAGAGAG
CAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGAAGCAGACTG
Found at i:68433541 original size:43 final size:43
Alignment explanation
Indices: 68433486--68433569 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
68433476 AGCCTTAAGC
* *
68433486 CTTATCTCTCTGAGGTAGCAAGAGAGCA-AGTTGAAGATTGAGT
1 CTTATCTCTCTGAGGTAGCAAGAAAGCAGA-CTGAAGATTGAGT
*
68433529 CTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGA
1 CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGA
68433570 AGGTTTTATC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 36 0.97
44 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.27
Consensus pattern (43 bp):
CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAGT
Found at i:68433839 original size:355 final size:356
Alignment explanation
Indices: 68433255--68434005 Score: 1116
Period size: 355 Copynumber: 2.1 Consensus size: 356
68433245 CTTTGGAGAT
** *
68433255 GGTGAATCTTATCTCCATGTATCGATAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTAAG
1 GGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTCATCTCTCTAAG
* * * *
68433320 GTAGCAAGAGAGTAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAATGAAGCAGACTGAGA
66 GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGACCGAGA
* *
68433385 ATTAAAGATTTTATCTCCCTGAAGTTACAGCGGAGCAGATCTTCACAGATGGCTAATCTTATCTC
131 ATTAAAGATTCTATCTCCCTGAAGTTACAGCGGAGCAGATCTTCACAGATGGCTAATATTATCTC
*
68433450 CATGTATCGGCAATGGAGCAGATTTAAGCCTTAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAA
196 CATGTATCGGCAATGGAGCAGATTTAAGCCTTAAGCCTTATCTCTCTGAAGTAGCAAGAGAGCAA
* * *
68433515 GTTGAAGATTGAGTCTTATCTT-TCTGAGGTAGCAAGAAAGCAGACTGA-AGATTGAAGGTTTTA
261 GTTGAAGAATGAGTCTCATCTTCT-TGAGGTAGCAAGAAAGCAGACTGAGA-ATTGAAGATTTTA
*
68433578 TCTCCCTAAACAGTAGTGGAGCAAATCGAAGAC
324 TCTCCCTAAACAGTAGCGGAGCAAATCGAAGAC
* * *
68433611 GGTGAATCTTATCTCCGTGTATCGGCAATGGAGCAGATTTTACCACTAA-CCTCATCTCTCTGAG
1 GGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTCATCTCTCTAAG
*
68433675 GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACCGA-A
66 GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGACCGAGA
* * *
68433739 GATTGAAGATTCTATCTCCCTGAAGTTGCAGGGGAGCAGATCTTCACAGATGGCTAATATTATCT
131 -ATTAAAGATTCTATCTCCCTGAAGTTACAGCGGAGCAGATCTTCACAGATGGCTAATATTATCT
*
68433804 CTATGTATCGGCAATGGAGCAGATTTAAGCCTTAAGCCTTATCTCTCTGAAGTAGCAAGAGAGCA
195 CCATGTATCGGCAATGGAGCAGATTTAAGCCTTAAGCCTTATCTCTCTGAAGTAGCAAGAGAGCA
* * *
68433869 GGTTGAAGAATGAGTCTCATCTTCTTGAGGTAGCAAGGAAGCAGGCTGAGAATTGAAGATTTTAT
260 AGTTGAAGAATGAGTCTCATCTTCTTGAGGTAGCAAGAAAGCAGACTGAGAATTGAAGATTTTAT
** * ** *
68433934 CTCCCTAAGTAGTAGCGGAGCAGATCGGGGAT
325 CTCCCTAAACAGTAGCGGAGCAAATCGAAGAC
*** *
68433966 GACAAATCTTATCTTCATGTA-CTGGCAATGGAGCAGATTT
1 GGTGAATCTTATCTCCATGTATC-GGCAATGGAGCAGATTT
68434006 AAGTCACCAG
Statistics
Matches: 355, Mismatches: 36, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
354 2 0.01
355 306 0.86
356 47 0.13
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (356 bp):
GGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTCATCTCTCTAAG
GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGACCGAGA
ATTAAAGATTCTATCTCCCTGAAGTTACAGCGGAGCAGATCTTCACAGATGGCTAATATTATCTC
CATGTATCGGCAATGGAGCAGATTTAAGCCTTAAGCCTTATCTCTCTGAAGTAGCAAGAGAGCAA
GTTGAAGAATGAGTCTCATCTTCTTGAGGTAGCAAGAAAGCAGACTGAGAATTGAAGATTTTATC
TCCCTAAACAGTAGCGGAGCAAATCGAAGAC
Found at i:68435074 original size:21 final size:21
Alignment explanation
Indices: 68435025--68435083 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
68435015 ATAATAAATC
*
68435025 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
68435045 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
68435067 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
68435084 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:68435211 original size:11 final size:11
Alignment explanation
Indices: 68435195--68435223 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
68435185 TCGGACTGGG
68435195 CCGGGTCGGGC
1 CCGGGTCGGGC
68435206 CCGGGTCGGGC
1 CCGGGTCGGGC
68435217 CCGGGTC
1 CCGGGTC
68435224 AAAAAACTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.38, G:0.52, T:0.10
Consensus pattern (11 bp):
CCGGGTCGGGC
Found at i:68438844 original size:25 final size:26
Alignment explanation
Indices: 68438802--68438856 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
68438792 GTTTTGGGTT
*
68438802 TTTTATTTGTGTGTTTTT-ATTTCTG
1 TTTTATTTGTGTGTTTTTAATTTCTA
*
68438827 TTTTATTTTTG-GTTTTTTAATTTCTA
1 TTTTATTTGTGTG-TTTTTAATTTCTA
68438853 TTTT
1 TTTT
68438857 TTTATTCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 1 0.04
25 15 0.58
26 10 0.38
ACGTcount: A:0.11, C:0.04, G:0.11, T:0.75
Consensus pattern (26 bp):
TTTTATTTGTGTGTTTTTAATTTCTA
Found at i:68439749 original size:2 final size:2
Alignment explanation
Indices: 68439744--68439779 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
68439734 AAAGAAGAAG
68439744 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68439780 GAAACAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68442913 original size:26 final size:26
Alignment explanation
Indices: 68442882--68443067 Score: 309
Period size: 26 Copynumber: 7.2 Consensus size: 26
68442872 TGAAATGCCC
*
68442882 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
68442908 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68442934 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
68442960 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
68442986 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
68443012 ATCATGGAATATTTATCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
68443038 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68443064 ATCA
1 ATCA
68443068 ATTTGTACCA
Statistics
Matches: 148, Mismatches: 12, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
26 148 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:68444887 original size:11 final size:11
Alignment explanation
Indices: 68444873--68444903 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
68444863 TATTGTATGT
68444873 GTATGCGTAGA
1 GTATGCGTAGA
68444884 GTATGCGTAGA
1 GTATGCGTAGA
*
68444895 GTATACGTA
1 GTATGCGTA
68444904 CAGTGTGAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.10, G:0.32, T:0.29
Consensus pattern (11 bp):
GTATGCGTAGA
Found at i:68445604 original size:59 final size:59
Alignment explanation
Indices: 68445512--68445627 Score: 223
Period size: 59 Copynumber: 2.0 Consensus size: 59
68445502 ATCGAACTTT
68445512 GACTCTTATTGTTTTGGTGTTTGAATGACGGGTTCTGGGGAACCTGTGGTGTGTAGCTC
1 GACTCTTATTGTTTTGGTGTTTGAATGACGGGTTCTGGGGAACCTGTGGTGTGTAGCTC
*
68445571 GACTCTTATTGTTTTGGTGTTTGAATGACGGGTTCTGGGGAACTTGTGGTGTGTAGC
1 GACTCTTATTGTTTTGGTGTTTGAATGACGGGTTCTGGGGAACCTGTGGTGTGTAGC
68445628 GGATGGATAG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.14, C:0.12, G:0.34, T:0.40
Consensus pattern (59 bp):
GACTCTTATTGTTTTGGTGTTTGAATGACGGGTTCTGGGGAACCTGTGGTGTGTAGCTC
Found at i:68453405 original size:20 final size:20
Alignment explanation
Indices: 68453380--68453418 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
68453370 TCACCCTTAC
68453380 TGGCATGAAAGTTTGGGTTG
1 TGGCATGAAAGTTTGGGTTG
68453400 TGGCATGAAAGTTTGGGTT
1 TGGCATGAAAGTTTGGGTT
68453419 TAACCCTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.38, T:0.36
Consensus pattern (20 bp):
TGGCATGAAAGTTTGGGTTG
Found at i:68455804 original size:3 final size:3
Alignment explanation
Indices: 68455796--68455830 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
68455786 CAAACAGACA
*
68455796 ATG ATG ATG ATG ATG ATG ATA ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
68455831 AATAACGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.37, C:0.00, G:0.29, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:68456760 original size:23 final size:22
Alignment explanation
Indices: 68456708--68456761 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
68456698 ACACAACCGT
68456708 GAATTTTTTGGACTTTTTAACA
1 GAATTTTTTGGACTTTTTAACA
* * *
68456730 GAAATTTTTGTACCTTTTTTACTA
1 GAATTTTTTGGA-CTTTTTAAC-A
68456754 -AATTTTTT
1 GAATTTTTT
68456762 CAAAGTTGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 10 0.38
23 15 0.58
24 1 0.04
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.56
Consensus pattern (22 bp):
GAATTTTTTGGACTTTTTAACA
Found at i:68464959 original size:122 final size:122
Alignment explanation
Indices: 68464825--68465153 Score: 425
Period size: 122 Copynumber: 2.7 Consensus size: 122
68464815 TACCTAACTG
*
68464825 AATTTTAATATGACATTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAATTCACTGG
1 AATTTTAATATGACATTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAACTCACTGG
** * *
68464890 TCAGAATTGTGGTCCCAAAACCACTTTTTCTGACA-TCATTAAAAAT-GAGTTATTACA
66 TCAGAATTGTGGTCCCAAAACCACGATTTCCGACACT-ACTAAAAATAG-GTTATTACA
* * * *
68464947 AATTTTGATATGACACTCTAATAACCTTGTAAATATTAAATAAATAATATTTACTAACTCATTGG
1 AATTTTAATATGACATTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAACTCACTGG
* * * *
68465012 TCTA-AATTGTGG-CCAAAAAATCACGATTTCCGACACTACTGAAAATAGGTTGTTACA
66 TC-AGAATTGTGGTCC-CAAAACCACGATTTCCGACACTACTAAAAATAGGTTATTACA
* * *
68465069 AATTTTAATACGACATTCTAATAACCTTATAAATATTAAATAAATAATATTGACTAACTCACTGA
1 AATTTTAATATGACATTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAACTCACTGG
*
68465134 TC-GAAATTGTAGTCCCAAAA
66 TCAG-AATTGTGGTCCCAAAA
68465154 TAACTGTTTT
Statistics
Matches: 178, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
121 2 0.01
122 171 0.96
123 5 0.03
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (122 bp):
AATTTTAATATGACATTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAACTCACTGG
TCAGAATTGTGGTCCCAAAACCACGATTTCCGACACTACTAAAAATAGGTTATTACA
Found at i:68465177 original size:122 final size:119
Alignment explanation
Indices: 68464825--68465194 Score: 422
Period size: 122 Copynumber: 3.0 Consensus size: 119
68464815 TACCTAACTG
*
68464825 AATTTTAATATGACATTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAATTCACTGG
1 AATTTTAATATGACATTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAACTCACTGG
* *
68464890 TCAGAATTGTGGTCCCAAAACCACT-TTTTCTGACATCATTAAAAATGAGTTATTACA
66 TCA-AATTGT-GTCCCAAAATCACTGTTTT-TGACA-CATTGAAAATGAGTTATTACA
* * * *
68464947 AATTTTGATATGACACTCTAATAACCTTGTAAATATTAAATAAATAATATTTACTAACTCATTGG
1 AATTTTAATATGACATTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAACTCACTGG
* * ** * *
68465012 TCTAAATTGTGGCCAAAAAATCAC-GATTTCCGACACTACTGAAAAT-AGGTTGTTACA
66 TC-AAATTGTGTCC-CAAAATCACTG-TTTTTGACAC-ATTGAAAATGA-GTTATTACA
* * *
68465069 AATTTTAATACGACATTCTAATAACCTTATAAATATTAAATAAATAATATTGACTAACTCACTGA
1 AATTTTAATATGACATTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAACTCACTGG
* * * **
68465134 TCGAAATTGTAGTCCCAAAATAACTGTTTTTTATACGATTGAAAATGACCTATTACA
66 TC-AAATTGT-GTCCCAAAATCACTGTTTTTGACAC-ATTGAAAATGAGTTATTACA
68465191 AATT
1 AATT
68465195 AACAATACAC
Statistics
Matches: 206, Mismatches: 33, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
121 5 0.02
122 192 0.93
123 9 0.04
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (119 bp):
AATTTTAATATGACATTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAACTCACTGG
TCAAATTGTGTCCCAAAATCACTGTTTTTGACACATTGAAAATGAGTTATTACA
Found at i:68466902 original size:12 final size:12
Alignment explanation
Indices: 68466894--68466919 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68466884 AATTTTGTAC
68466894 ATGAGTTTGATA
1 ATGAGTTTGATA
68466906 ATGAGTTTGATA
1 ATGAGTTTGATA
68466918 AT
1 AT
68466920 TTTTTAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (12 bp):
ATGAGTTTGATA
Found at i:68468003 original size:15 final size:15
Alignment explanation
Indices: 68467985--68468015 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
68467975 AAAATAAGGT
68467985 TTTTTAAAATATTTA
1 TTTTTAAAATATTTA
*
68468000 TTTTTATAATATTTA
1 TTTTTAAAATATTTA
68468015 T
1 T
68468016 CTAAAATTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTTAAAATATTTA
Found at i:68477481 original size:36 final size:36
Alignment explanation
Indices: 68477434--68477506 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
68477424 AATTAATTAG
68477434 TGAGTATTGTTACAATTGAATTTGCCACGTTTATTC
1 TGAGTATTGTTACAATTGAATTTGCCACGTTTATTC
68477470 TGAGTATTGTTACAATTGAATTTGCCACGTTTATTC
1 TGAGTATTGTTACAATTGAATTTGCCACGTTTATTC
68477506 T
1 T
68477507 TTCTTTATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.45
Consensus pattern (36 bp):
TGAGTATTGTTACAATTGAATTTGCCACGTTTATTC
Found at i:68478102 original size:68 final size:68
Alignment explanation
Indices: 68477988--68478130 Score: 277
Period size: 68 Copynumber: 2.1 Consensus size: 68
68477978 CACTCACTTG
*
68477988 TGGTAGAAACATCTGAGAAGCCAAGTAAGCTTGAGTGTCCCAAGTTTGATGGTAGTGATTTTCGA
1 TGGTGGAAACATCTGAGAAGCCAAGTAAGCTTGAGTGTCCCAAGTTTGATGGTAGTGATTTTCGA
68478053 GGA
66 GGA
68478056 TGGTGGAAACATCTGAGAAGCCAAGTAAGCTTGAGTGTCCCAAGTTTGATGGTAGTGATTTTCGA
1 TGGTGGAAACATCTGAGAAGCCAAGTAAGCTTGAGTGTCCCAAGTTTGATGGTAGTGATTTTCGA
68478121 GGA
66 GGA
68478124 TGGTGGA
1 TGGTGGA
68478131 CTAAGCTTGA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 74 1.00
ACGTcount: A:0.28, C:0.13, G:0.31, T:0.28
Consensus pattern (68 bp):
TGGTGGAAACATCTGAGAAGCCAAGTAAGCTTGAGTGTCCCAAGTTTGATGGTAGTGATTTTCGA
GGA
Found at i:68478946 original size:20 final size:18
Alignment explanation
Indices: 68478917--68478961 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
68478907 AACGAAAAGC
68478917 AGGG-AAAGAAAGAAAGAA
1 AGGGAAAAGAAAG-AAGAA
68478935 AGGAGAAAAGAAAGAAGAA
1 AGG-GAAAAGAAAGAAGAA
68478954 AGGGAAAA
1 AGGGAAAA
68478962 TTGAAGGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 9 0.36
20 8 0.32
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (18 bp):
AGGGAAAAGAAAGAAGAA
Found at i:68483557 original size:19 final size:20
Alignment explanation
Indices: 68483533--68483574 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
68483523 AAATTTCATT
68483533 GAAGG-ATTGCCGAACTCAA
1 GAAGGAATTGCCGAACTCAA
68483552 GAAGGAATTGCCGAACTCAA
1 GAAGGAATTGCCGAACTCAA
68483572 GAA
1 GAA
68483575 AGAAGAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.40, C:0.19, G:0.26, T:0.14
Consensus pattern (20 bp):
GAAGGAATTGCCGAACTCAA
Found at i:68484373 original size:23 final size:23
Alignment explanation
Indices: 68484343--68484388 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
68484333 AGGAAAGAAA
68484343 GATAAAGAATCATCATCTTTTTC
1 GATAAAGAATCATCATCTTTTTC
68484366 GATAAAGAATCATCATCTTTTTC
1 GATAAAGAATCATCATCTTTTTC
68484389 CCATGCACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (23 bp):
GATAAAGAATCATCATCTTTTTC
Found at i:68486512 original size:46 final size:46
Alignment explanation
Indices: 68486460--68486916 Score: 585
Period size: 46 Copynumber: 10.0 Consensus size: 46
68486450 GCTTTCTGAA
* **
68486460 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGGC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** *
68486506 ATGAAATGAATAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
68486552 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACACGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
68486598 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
68486644 ATAAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
68486690 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
68486736 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * ** * ** * *
68486781 CGGGAATGAATAAGACCATGGTTGAAAGATAACATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** * * *
68486827 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGAAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
68486873 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
68486917 TCGAAGATAA
Statistics
Matches: 362, Mismatches: 47, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
45 36 0.10
46 326 0.90
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:68495007 original size:13 final size:13
Alignment explanation
Indices: 68494991--68495017 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
68494981 AAAATACATA
68494991 ATAAAAAAATATC
1 ATAAAAAAATATC
68495004 ATAAAAAAATATC
1 ATAAAAAAATATC
68495017 A
1 A
68495018 ATTTGACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.22
Consensus pattern (13 bp):
ATAAAAAAATATC
Found at i:68505121 original size:39 final size:39
Alignment explanation
Indices: 68505067--68505146 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
68505057 CTTAAATAAT
68505067 CAAAAACATCACGGTCAGTCATATTAAGATTATCAAGCC
1 CAAAAACATCACGGTCAGTCATATTAAGATTATCAAGCC
68505106 CAAAAACATCACGGTCAGTCATATTAAGATTATCAAGCC
1 CAAAAACATCACGGTCAGTCATATTAAGATTATCAAGCC
68505145 CA
1 CA
68505147 CCGGATTCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.23
Consensus pattern (39 bp):
CAAAAACATCACGGTCAGTCATATTAAGATTATCAAGCC
Found at i:68506834 original size:2 final size:2
Alignment explanation
Indices: 68506829--68506853 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
68506819 AAATAAAAAC
68506829 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
68506854 GAGAGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68506858 original size:2 final size:2
Alignment explanation
Indices: 68506853--68506883 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
68506843 ATATATATAT
68506853 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
68506884 ATCAGAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:68512603 original size:2 final size:2
Alignment explanation
Indices: 68512596--68512627 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
68512586 CTTTTCATCA
68512596 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68512628 TAGTTCTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68513074 original size:12 final size:12
Alignment explanation
Indices: 68513057--68513090 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
68513047 CGGCCCACCC
68513057 ATATTAATTTTT
1 ATATTAATTTTT
*
68513069 ATATTATTTTTT
1 ATATTAATTTTT
68513081 ATA-TAATTTT
1 ATATTAATTTT
68513091 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:68513259 original size:30 final size:30
Alignment explanation
Indices: 68513216--68513277 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
68513206 CTTAACAAGA
68513216 AAATGCCTATAAAATAATAACAAAATTAAC
1 AAATGCCTATAAAATAATAACAAAATTAAC
* *
68513246 AAATGTCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTATAAAATAATAACAAAATTAAC
68513276 AA
1 AA
68513278 TAAATAAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.60, C:0.11, G:0.03, T:0.26
Consensus pattern (30 bp):
AAATGCCTATAAAATAATAACAAAATTAAC
Found at i:68513941 original size:17 final size:20
Alignment explanation
Indices: 68513896--68513942 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
68513886 AAAATTAGTT
*
68513896 ATCAATTAATTCAACTCGAA
1 ATCAAATAATTCAACTCGAA
68513916 ATCAAATAATT-AAC-CGAA
1 ATCAAATAATTCAACTCGAA
68513934 AT-AAATAAT
1 ATCAAATAAT
68513943 ATATATCATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 7 0.27
18 6 0.23
19 3 0.12
20 10 0.38
ACGTcount: A:0.53, C:0.15, G:0.04, T:0.28
Consensus pattern (20 bp):
ATCAAATAATTCAACTCGAA
Found at i:68514121 original size:35 final size:36
Alignment explanation
Indices: 68514057--68514125 Score: 97
Period size: 35 Copynumber: 1.9 Consensus size: 36
68514047 AATAAACATT
*
68514057 TAAAATTAAACTCAATTCAAATAATTAATTTAATTA
1 TAAAATTAAACTCAATTCAAATAAATAATTTAATTA
*
68514093 TAAAATTAAA-TTATATT-AAATAAATAATTTAAT
1 TAAAATTAAACTCA-ATTCAAATAAATAATTTAAT
68514126 AAAAAAATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
35 17 0.57
36 13 0.43
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (36 bp):
TAAAATTAAACTCAATTCAAATAAATAATTTAATTA
Found at i:68514133 original size:35 final size:36
Alignment explanation
Indices: 68514058--68514133 Score: 93
Period size: 35 Copynumber: 2.1 Consensus size: 36
68514048 ATAAACATTT
* * *
68514058 AAAATTAAACTCAATTCAAATAATTAATTTAATTAT
1 AAAATTAAACTCAATTCAAATAAATAATTTAATAAA
*
68514094 AAAATTAAA-TTATATT-AAATAAATAATTTAATAAA
1 AAAATTAAACTCA-ATTCAAATAAATAATTTAATAAA
68514129 AAAAT
1 AAAAT
68514134 ACAATTCCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
35 23 0.66
36 12 0.34
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (36 bp):
AAAATTAAACTCAATTCAAATAAATAATTTAATAAA
Found at i:68516111 original size:112 final size:110
Alignment explanation
Indices: 68515967--68516201 Score: 398
Period size: 112 Copynumber: 2.1 Consensus size: 110
68515957 TTGTACTTTG
*
68515967 GCCCCCTTAAAAATAAAAAATTTGATTTAATCCATTAAAAATTATAAAAATATAGGCTATTCAAA
1 GCCCCC-TAAAAATAAAAAATTTGATTTAATCCATTAAAAATTATAAAAATATAAGCTATTCAAA
*
68516032 TGGTGAAATTGCATTTTTACTATAGTAAAAATTACAATTTAATTTC
65 TGGTGAAATTACATTTTTACTATAGTAAAAATTACAATTTAATTTC
68516078 GCCCCCTAAAAATAATAAAAATTTGATTTAATCCATTAAAAATTATAAAAATATAAGCTATTCAA
1 GCCCCCTAAAAAT-A-AAAAATTTGATTTAATCCATTAAAAATTATAAAAATATAAGCTATTCAA
* * *
68516143 ATGGTGAAATTACATTTTTACTGTCGTAAAAATTACAATTTAATTTT
64 ATGGTGAAATTACATTTTTACTATAGTAAAAATTACAATTTAATTTC
68516190 GCCCCCTAAAAA
1 GCCCCCTAAAAA
68516202 AATTTTCTAG
Statistics
Matches: 117, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
110 7 0.06
111 7 0.06
112 103 0.88
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35
Consensus pattern (110 bp):
GCCCCCTAAAAATAAAAAATTTGATTTAATCCATTAAAAATTATAAAAATATAAGCTATTCAAAT
GGTGAAATTACATTTTTACTATAGTAAAAATTACAATTTAATTTC
Found at i:68521956 original size:23 final size:23
Alignment explanation
Indices: 68521930--68521979 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
68521920 CTTGGGCCGT
68521930 GCCAGGCCAATCAAGCCTGGTGG
1 GCCAGGCCAATCAAGCCTGGTGG
68521953 GCCAGGCCAATCAAGCCTGGTGG
1 GCCAGGCCAATCAAGCCTGGTGG
68521976 GCCA
1 GCCA
68521980 AACTTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.22, C:0.32, G:0.34, T:0.12
Consensus pattern (23 bp):
GCCAGGCCAATCAAGCCTGGTGG
Found at i:68525430 original size:35 final size:34
Alignment explanation
Indices: 68525381--68525446 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 34
68525371 CAAATCTTTA
* *
68525381 AACCATGAATCCCAAACTCATAACACGTAAACTTG
1 AACCATGAAACCCAAACCCATAACAC-TAAACTTG
*
68525416 AACCATTAAACCCAAACCCATAACACTAAAC
1 AACCATGAAACCCAAACCCATAACACTAAAC
68525447 CTTAAACCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 5 0.18
35 23 0.82
ACGTcount: A:0.47, C:0.32, G:0.05, T:0.17
Consensus pattern (34 bp):
AACCATGAAACCCAAACCCATAACACTAAACTTG
Found at i:68526000 original size:20 final size:19
Alignment explanation
Indices: 68525965--68526016 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
68525955 TCTAAATTTT
68525965 ATTTTTTAAAATATTTTTAGA
1 ATTTTTT-AAA-ATTTTTAGA
*
68525986 ACTTTTTTAAAATTTTTATA
1 A-TTTTTTAAAATTTTTAGA
68526006 ATTTTTTAAAA
1 ATTTTTTAAAA
68526017 ATATAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 10 0.34
20 9 0.31
21 4 0.14
22 6 0.21
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (19 bp):
ATTTTTTAAAATTTTTAGA
Found at i:68526001 original size:10 final size:10
Alignment explanation
Indices: 68525965--68526016 Score: 61
Period size: 10 Copynumber: 5.1 Consensus size: 10
68525955 TCTAAATTTT
68525965 ATTTTTTAAA
1 ATTTTTTAAA
68525975 ATATTTTTAGAA
1 AT-TTTTTA-AA
*
68525987 CTTTTTTAAA
1 ATTTTTTAAA
*
68525997 A-TTTTTATA
1 ATTTTTTAAA
68526006 ATTTTTTAAA
1 ATTTTTTAAA
68526016 A
1 A
68526017 ATATAAATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
9 8 0.23
10 12 0.34
11 12 0.34
12 3 0.09
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (10 bp):
ATTTTTTAAA
Found at i:68526017 original size:20 final size:20
Alignment explanation
Indices: 68525965--68526018 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
68525955 TCTAAATTTT
68525965 ATTTTTTAAAATATTTTTAGA
1 ATTTTTTAAAA-ATTTTTAGA
*
68525986 ACTTTTTT-AAAATTTTTATA
1 A-TTTTTTAAAAATTTTTAGA
68526006 ATTTTTTAAAAAT
1 ATTTTTTAAAAAT
68526019 ATAAATTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 6 0.20
20 14 0.47
21 4 0.13
22 6 0.20
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (20 bp):
ATTTTTTAAAAATTTTTAGA
Done.