Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 238 of 292
Found at i:69126166 original size:18 final size:19
Alignment explanation
Indices: 69126133--69126169 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
69126123 GATATGATTC
*
69126133 TAAAATTATTTAAAAAAAT
1 TAAAATTATATAAAAAAAT
69126152 TAAAA-TATATAAAAAAAT
1 TAAAATTATATAAAAAAAT
69126170 CAGGGAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAATTATATAAAAAAAT
Found at i:69126458 original size:22 final size:21
Alignment explanation
Indices: 69126423--69126549 Score: 60
Period size: 19 Copynumber: 6.5 Consensus size: 21
69126413 AAAAGGTATC
* *
69126423 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
69126444 TACAAAATCATATCTTGTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
69126467 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
69126486 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
**
69126504 T--GTATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
69126521 TGCATATCATA--TCTATGAT
1 TACAAATCATATCTCTAAGAT
69126540 TACAAATCAT
1 TACAAATCAT
69126550 TGAAGATTAT
Statistics
Matches: 89, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
17 15 0.17
18 15 0.17
19 32 0.36
21 3 0.03
22 15 0.17
23 9 0.10
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:69126485 original size:19 final size:19
Alignment explanation
Indices: 69126461--69126540 Score: 130
Period size: 19 Copynumber: 4.4 Consensus size: 19
69126451 TCATATCTTG
69126461 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
69126480 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
69126498 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
69126515 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
*
69126534 TATGATT
1 TAAGATT
69126541 ACAAATCATT
Statistics
Matches: 57, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
17 16 0.28
18 16 0.28
19 25 0.44
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:69126513 original size:35 final size:37
Alignment explanation
Indices: 69126461--69126540 Score: 128
Period size: 35 Copynumber: 2.2 Consensus size: 37
69126451 TCATATCTTG
69126461 TAAGATTGCATATCATATCTAAGATTGCA-ATCATATC
1 TAAGATTG-ATATCATATCTAAGATTGCATATCATATC
69126498 TAAGATTG-TATCATATCTAAGATTGCATATCATATC
1 TAAGATTGATATCATATCTAAGATTGCATATCATATC
*
69126534 TATGATT
1 TAAGATT
69126541 ACAAATCATT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
35 19 0.46
36 14 0.34
37 8 0.20
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (37 bp):
TAAGATTGATATCATATCTAAGATTGCATATCATATC
Found at i:69126528 original size:14 final size:15
Alignment explanation
Indices: 69126473--69126528 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
69126463 AGATTGCATA
69126473 TCATATCTAAGATTG
1 TCATATCTAAGATTG
69126488 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
69126506 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
69126523 -CATATC
1 TCATATC
69126529 ATATCTATGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:69126548 original size:19 final size:19
Alignment explanation
Indices: 69126436--69126549 Score: 117
Period size: 19 Copynumber: 5.9 Consensus size: 19
69126426 AAATTAAATC
*
69126436 TCTAAGATTACAAAATCATA
1 TCTAAGATTGC-AAATCATA
*
69126456 TCTTGTAAGATTGCATATCATA
1 TC---TAAGATTGCAAATCATA
69126478 TCTAAGATTGC-AATCATA
1 TCTAAGATTGCAAATCATA
*
69126496 TCTAAGATTG--TATCATA
1 TCTAAGATTGCAAATCATA
*
69126513 TCTAAGATTGCATATCATA
1 TCTAAGATTGCAAATCATA
* *
69126532 TCTATGATTACAAATCAT
1 TCTAAGATTGCAAATCAT
69126550 TGAAGATTAT
Statistics
Matches: 82, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
17 16 0.20
18 16 0.20
19 31 0.38
20 2 0.02
22 9 0.11
23 8 0.10
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCAAATCATA
Found at i:69126962 original size:45 final size:45
Alignment explanation
Indices: 69126906--69127099 Score: 246
Period size: 45 Copynumber: 4.3 Consensus size: 45
69126896 CGAAACCTGC
* * * *
69126906 TATCTTTGATCTGCTCTCCGTCTAATACAGAGACGCTAAATCTAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
*
69126951 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * *
69126996 T-TCTTCAATCTGCTCCCCATCTAATACAGAGATGCCAAATTTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * *
69127040 TATCTCCAATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* *
69127085 CATCTTGGATCTGCT
1 TATCTTCGATCTGCT
69127100 TCGATGTAAA
Statistics
Matches: 129, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 39 0.30
45 90 0.70
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.32
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
Found at i:69127022 original size:89 final size:89
Alignment explanation
Indices: 69126914--69127083 Score: 250
Period size: 89 Copynumber: 1.9 Consensus size: 89
69126904 GCTATCTTTG
* * * * *
69126914 ATCTGCTCTCCGTCTAATACAGAGACGCTAAATCTATTATCTTCGATCTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTATTATCTCCAATCTGCTCCCCGTCTAATAC
69126979 AGAGACGCCAAATCTGCTTCTTCA
66 AGAGACGCCAAATCTGCTTCTTCA
* * * *
69127003 ATCTGCTCCCCATCTAATACAGAGATGCCAAATTTGTTATCTCCAATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTATTATCTCCAATCTGCTCCCCGTCTAATAC
*
69127068 AGAGATGCCAAATCTG
66 AGAGACGCCAAATCTG
69127084 TCATCTTGGA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
89 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (89 bp):
ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTATTATCTCCAATCTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTGCTTCTTCA
Found at i:69127242 original size:78 final size:78
Alignment explanation
Indices: 69127113--69127329 Score: 362
Period size: 78 Copynumber: 2.8 Consensus size: 78
69127103 ATGTAAACAC
* * *
69127113 ATGAAGGTCAGATATGCTATGCCTTCGATCTGCTCCCCGTCTACTACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
69127178 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
69127191 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
69127256 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * **
69127269 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
69127330 TGTTTCTTCG
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 130 1.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:69127825 original size:219 final size:220
Alignment explanation
Indices: 69127271--69127987 Score: 1154
Period size: 220 Copynumber: 3.3 Consensus size: 220
69127261 CTGCTTCAAT
* *
69127271 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* *
69127336 TTCGATTTGTTCTCTAACAGTACAGAGATTCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
*
69127401 TGAAAGCTAAATCT-GCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTT
131 TGAAAGCCAAATCTAGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTT
69127465 GGATCTACTTCGATGTGAAGACATCC
196 GGATCTACTTCGATGTGAA-ACATCC
*
69127491 GAAGGTTAGATCTGATATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* ** *
69127556 TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCATAAACACG
66 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* **
69127621 TGAAAGCCAAAT-TAGCTATGTTTTTTATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTT
131 TGAAAGCCAAATCTAGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTT
69127685 GGATCTACTTCGATGTGAAACATCC
196 GGATCTACTTCGATGTGAAACATCC
*
69127710 GAAGGTTAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTA
1 GAAGGTTAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * * * *
69127775 TTTGATTCGTTCTCTGATAGTACAGAGATGCCAAATCATCTTAAATCTGCTTCAGCGTAAACACA
66 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* * *
69127840 TGAAAGCCAAATCTA-TTATGTCTTCGATCTGCTCCTTGTAAACACAAGGATGCCAAATCATCTT
131 TGAAAGCCAAATCTAGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTT
69127904 GGATCTACTTCGATGTGAAAACATCC
196 GGATCTACTTCGATGTG-AAACATCC
* ***
69127930 GAAGGTTAGATCTGCTATGTCTTTGATCTGCT-TCCGTCTAATACAAAGATGCCAAATC
1 GAAGGTTAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
69127988 ATCTTGGATC
Statistics
Matches: 460, Mismatches: 34, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
219 220 0.48
220 240 0.52
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32
Consensus pattern (220 bp):
GAAGGTTAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
TGAAAGCCAAATCTAGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTT
GGATCTACTTCGATGTGAAACATCC
Found at i:69128069 original size:78 final size:78
Alignment explanation
Indices: 69127939--69128315 Score: 587
Period size: 78 Copynumber: 4.8 Consensus size: 78
69127929 CGAAGGTTAG
* *
69127939 ATCTGCTATGTCTTTGATCTGCT-TCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTACTT
1 ATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTACTT
*
69128003 TAATGAAGGTCCA
66 CAATGAAGGTCCA
* * * *
69128016 ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTACTT
*
69128081 CAATGAAGGTCAA
66 CAATGAAGGTCCA
* *
69128094 ATCTGCTCTGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTACTT
69128159 CAATGAAGGT-CA
66 CAATGAAGGTCCA
* * *
69128171 GATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGTCAAATCATCTTGGATCTACT
1 -ATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTACT
69128236 TCAATGAAGGTCCA
65 TCAATGAAGGTCCA
* * *
69128250 ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTACTT
69128315 C
66 C
69128316 GATGTGAAAA
Statistics
Matches: 275, Mismatches: 22, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
77 23 0.08
78 250 0.91
79 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.34
Consensus pattern (78 bp):
ATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTACTT
CAATGAAGGTCCA
Found at i:69128213 original size:156 final size:156
Alignment explanation
Indices: 69127930--69128389 Score: 609
Period size: 156 Copynumber: 2.9 Consensus size: 156
69127920 GAAAACATCC
* * * *
69127930 GAAGGTTAGATCTGCTATGTCTTTGATCTGCT-TCCGTCTAATACAAAGATGCCAAATCATCTTG
1 GAAGGTCAAATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTG
* * * * * *
69127994 GATCTACTTTAATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGAT
66 GATCTGCTTCAATGAAGGT-CAGATCTGTTATGTCTTAGATCTGCTCTCCGTCGAATATAGAGAT
*
69128058 GCCAAATCATCTTGGATCTGCTTCAAT
130 GCCAAATCATCTTGGATCTACTTCAAT
*
69128085 GAAGGTCAAATCTGCTCTGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAAATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTG
* *
69128150 GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATG
66 GATCTGCTTCAATGAAGGTCAGATCTGTTATGTCTTAGATCTGCTCTCCGTCGAATATAGAGATG
*
69128215 TCAAATCATCTTGGATCTACTTCAAT
131 CCAAATCATCTTGGATCTACTTCAAT
* * *
69128241 GAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAAATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTG
*
69128306 GATCTGCTTCGATGTGAAAACATCCGAAGGTTAGATCTGTTATGTCTTAGATCTGCTCTCCGTCG
66 GATCTGCTTC---------A-AT--GAAGGTCAGATCTGTTATGTCTTAGATCTGCTCTCCGTCG
*
69128371 AATATGGAGATGCCAAATC
119 AATATAGAGATGCCAAATC
69128390 TGTTTCTTCG
Statistics
Matches: 268, Mismatches: 23, Indels: 15
0.88 0.08 0.05
Matches are distributed among these distances:
155 30 0.11
156 181 0.68
165 1 0.00
166 2 0.01
168 54 0.20
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (156 bp):
GAAGGTCAAATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTGCTTCAATGAAGGTCAGATCTGTTATGTCTTAGATCTGCTCTCCGTCGAATATAGAGATG
CCAAATCATCTTGGATCTACTTCAAT
Found at i:69136418 original size:17 final size:18
Alignment explanation
Indices: 69136396--69136430 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
69136386 GATATGATAC
*
69136396 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
69136413 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
69136431 CAGGGAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:69136715 original size:22 final size:21
Alignment explanation
Indices: 69136680--69136755 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
69136670 AAAAGGTATC
* *
69136680 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
69136701 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
69136724 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
69136743 TGC-AATCATATCT
1 TACAAATCATATCT
69136756 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:69136772 original size:35 final size:37
Alignment explanation
Indices: 69136709--69136806 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
69136699 ATTACAAAAT
69136709 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
69136745 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
69136780 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
69136807 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:69136814 original size:17 final size:19
Alignment explanation
Indices: 69136716--69136806 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
69136706 AATCATATCT
69136716 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
69136735 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
69136753 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
69136770 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
69136789 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
69136807 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:69139671 original size:46 final size:46
Alignment explanation
Indices: 69139604--69139695 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
69139594 CTCTGATATG
* * *
69139604 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAAA
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAA
* * *
69139650 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTCAAA
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAA
69139696 GATAAATAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (46 bp):
AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAA
Found at i:69143665 original size:46 final size:46
Alignment explanation
Indices: 69143598--69143689 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
69143588 CTCTGATATG
* * *
69143598 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAAA
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAA
* * *
69143644 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTCAAA
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAA
69143690 GATAAATAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (46 bp):
AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAA
Found at i:69144710 original size:23 final size:22
Alignment explanation
Indices: 69144667--69144724 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
69144657 AAAAGGTATC
* *
69144667 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
69144688 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
69144711 TGCATATCATATCT
1 TACAAATCATATCT
69144725 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:69144738 original size:22 final size:19
Alignment explanation
Indices: 69144694--69144758 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 19
69144684 AGATTACAAA
69144694 ATCATATCTTCTAAGATTG
1 ATCATATCTTCTAAGATTG
69144713 --CATATCATATCTAAGATTG
1 ATCATATC-T-TCTAAGATTG
69144732 CATCATA---TCTAAGATTG
1 -ATCATATCTTCTAAGATTG
69144749 TATCATATCT
1 -ATCATATCT
69144759 AAGATTGCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 15
0.70 0.02 0.28
Matches are distributed among these distances:
17 22 0.59
18 1 0.03
19 10 0.27
22 4 0.11
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (19 bp):
ATCATATCTTCTAAGATTG
Found at i:69144771 original size:14 final size:15
Alignment explanation
Indices: 69144717--69144790 Score: 69
Period size: 17 Copynumber: 4.5 Consensus size: 15
69144707 AGATTGCATA
69144717 TCATATCTAAGATTG
1 TCATATCTAAGATTG
69144732 CATCATATCTAAGATTG
1 --TCATATCTAAGATTG
69144749 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
69144766 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
69144785 -CATATC
1 TCATATC
69144791 ATTGAAGATT
Statistics
Matches: 54, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
14 6 0.11
17 31 0.57
19 17 0.31
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:69144800 original size:17 final size:19
Alignment explanation
Indices: 69144703--69144792 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
69144693 AATCATATCT
69144703 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
69144722 TCTAAGATTGC--ATCATA
1 TCTAAGATTGCATATCATA
69144739 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
69144756 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
69144775 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
69144793 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 32 0.47
19 36 0.53
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:69147660 original size:45 final size:45
Alignment explanation
Indices: 69147594--69147684 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
69147584 CTCTGATATG
* * *
69147594 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAA
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAA
* * *
69147639 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTCAA
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAA
69147684 A
1 A
69147685 GATAAATAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAA
Found at i:69147695 original size:45 final size:45
Alignment explanation
Indices: 69147601--69147697 Score: 122
Period size: 45 Copynumber: 2.2 Consensus size: 45
69147591 ATGAAATGTG
* * * *
69147601 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAATGAG
1 TAAGACCATAGTTGAAAGACACCATGGCAACATGACAAAAATAAA
* * * *
69147646 TAAGACCATAGTTGAAAGACACTATGGCATCATGTCAAAGATAAA
1 TAAGACCATAGTTGAAAGACACCATGGCAACATGACAAAAATAAA
69147691 TAAGACC
1 TAAGACC
69147698 GTGGATGGGA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.44, C:0.16, G:0.20, T:0.20
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACCATGGCAACATGACAAAAATAAA
Found at i:69152773 original size:46 final size:46
Alignment explanation
Indices: 69152706--69152797 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
69152696 CTCTGATATG
* * *
69152706 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAAA
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAA
* * *
69152752 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTCAAA
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAA
69152798 GATAAATAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (46 bp):
AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAA
Found at i:69155256 original size:17 final size:17
Alignment explanation
Indices: 69155230--69155273 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
69155220 TTTTAATAAA
69155230 AATA-AAAAAATATTTT
1 AATATAAAAAATATTTT
* *
69155246 ATTTTAAAAAATATTTT
1 AATATAAAAAATATTTT
69155263 AATATAAAAAA
1 AATATAAAAAA
69155274 AGGAGTTGCG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 2 0.09
17 21 0.91
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AATATAAAAAATATTTT
Found at i:69157805 original size:26 final size:24
Alignment explanation
Indices: 69157747--69157806 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 24
69157737 AACATGATTT
*
69157747 TTGGAGATAATTTATTCAAAATAC
1 TTGGAGATAATTTATTCAAAAGAC
**
69157771 TTAAAGATAATTTATTCGAAAACGAC
1 TTGGAGATAATTTATTC-AAAA-GAC
69157797 TTGGAGATAA
1 TTGGAGATAA
69157807 AACTTCAAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 15 0.52
25 4 0.14
26 10 0.34
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.33
Consensus pattern (24 bp):
TTGGAGATAATTTATTCAAAAGAC
Found at i:69158595 original size:11 final size:10
Alignment explanation
Indices: 69158579--69158621 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
69158569 CATATTTACA
69158579 TTTTATGTTAT
1 TTTTA-GTTAT
* *
69158590 TTTTATTTGT
1 TTTTAGTTAT
69158600 TTTTAGTTAAT
1 TTTTAGTT-AT
69158611 TTTTAGTTAT
1 TTTTAGTTAT
69158621 T
1 T
69158622 CTGAGTAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 13 0.48
11 14 0.52
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (10 bp):
TTTTAGTTAT
Found at i:69160758 original size:46 final size:46
Alignment explanation
Indices: 69160676--69160767 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
69160666 AGTGATATGA
* * *
69160676 ACAAAATATGTTTAACTCAATATAGTAGAAAGTGTAAGAATAGTTG
1 ACAAAATATGTTTAACTCAAGATAGTACAAAATGTAAGAATAGTTG
* *
69160722 ACAAAATGTGTTTAACTCAAGATATTACAAAATGTAAGAATAGTTG
1 ACAAAATATGTTTAACTCAAGATAGTACAAAATGTAAGAATAGTTG
69160768 GCATATCTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.46, C:0.08, G:0.16, T:0.30
Consensus pattern (46 bp):
ACAAAATATGTTTAACTCAAGATAGTACAAAATGTAAGAATAGTTG
Found at i:69180290 original size:26 final size:25
Alignment explanation
Indices: 69180251--69180336 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 25
69180241 CCAAATTTAC
**
69180251 AAAAAAAAAAAAATAGTTGAGTGAT
1 AAAAAAAATTAAATAGTTGAGTGAT
*
69180276 AACAAAAAATTAAATAGTTAAGTGAT
1 AA-AAAAAATTAAATAGTTGAGTGAT
*
69180302 CAAATTAAATAAATT-GATAGTTGAGTGAT
1 --AA--AAA-AAATTAAATAGTTGAGTGAT
69180331 AAAAAA
1 AAAAAA
69180337 GGGTAAACTA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
24 1 0.02
25 5 0.10
26 20 0.40
27 2 0.04
28 2 0.04
29 15 0.30
30 5 0.10
ACGTcount: A:0.58, C:0.02, G:0.14, T:0.26
Consensus pattern (25 bp):
AAAAAAAATTAAATAGTTGAGTGAT
Found at i:69181991 original size:15 final size:15
Alignment explanation
Indices: 69181971--69182006 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
69181961 TCTTCGATCT
69181971 ACGATGACGATGATG
1 ACGATGACGATGATG
69181986 ACGATGACGATGATG
1 ACGATGACGATGATG
*
69182001 ATGATG
1 ACGATG
69182007 TTGAGAAGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.33, C:0.11, G:0.33, T:0.22
Consensus pattern (15 bp):
ACGATGACGATGATG
Found at i:69187752 original size:11 final size:11
Alignment explanation
Indices: 69187733--69187761 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
69187723 GTATTTGTGA
69187733 AAAAT-AAAAT
1 AAAATAAAAAT
69187743 AAAATAAAAAT
1 AAAATAAAAAT
69187754 AAAATAAA
1 AAAATAAA
69187762 GAACACACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:69192201 original size:11 final size:11
Alignment explanation
Indices: 69192182--69192210 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
69192172 CAATTTGTGA
69192182 AAAAT-AAAAT
1 AAAATAAAAAT
69192192 AAAATAAAAAT
1 AAAATAAAAAT
69192203 AAAATAAA
1 AAAATAAA
69192211 TAACACACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:69201115 original size:25 final size:26
Alignment explanation
Indices: 69201087--69201143 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
69201077 GCATTTAGGT
**
69201087 TAATTTAAC-CCTAGGGGTATTTCAG
1 TAATTTAACACCTAGGGGTATAACAG
**
69201112 TAATTTTTCACCTAGGGGTATAACAG
1 TAATTTAACACCTAGGGGTATAACAG
69201138 TAATTT
1 TAATTT
69201144 TCCATACATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 7 0.26
26 20 0.74
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (26 bp):
TAATTTAACACCTAGGGGTATAACAG
Found at i:69201125 original size:26 final size:27
Alignment explanation
Indices: 69201096--69201171 Score: 84
Period size: 26 Copynumber: 2.8 Consensus size: 27
69201086 TTAATTTAAC
*
69201096 CCTAGGGGTATTTCAGTAATTTTTC-A
1 CCTAGGGGTATTTCAGTAATTTTCCAA
**
69201122 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATTTCAGTAATTTTCCA-A
*
69201150 CATAGGGGTATTAT-AGTAATTT
1 CCTAGGGGTATT-TCAGTAATTT
69201172 ATCTGTTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 22 0.54
28 19 0.46
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (27 bp):
CCTAGGGGTATTTCAGTAATTTTCCAA
Found at i:69201167 original size:28 final size:26
Alignment explanation
Indices: 69201098--69201171 Score: 78
Period size: 28 Copynumber: 2.8 Consensus size: 26
69201088 AATTTAACCC
* *
69201098 TAGGGGTATT-TCAGTAATTTTTCACC
1 TAGGGGTATTAT-AGTAATTTTCCACA
* *
69201124 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATTATAGTAATTTTCC--ACA
69201152 TAGGGGTATTATAGTAATTT
1 TAGGGGTATTATAGTAATTT
69201172 ATCTGTTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 19 0.49
28 20 0.51
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (26 bp):
TAGGGGTATTATAGTAATTTTCCACA
Found at i:69202656 original size:26 final size:26
Alignment explanation
Indices: 69202620--69202677 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
69202610 CATGAAATTC
69202620 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
69202646 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
69202672 TTATCA
1 TTATCA
69202678 ATTTGTATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:69205560 original size:25 final size:25
Alignment explanation
Indices: 69205536--69205583 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
69205526 ATGTGGAATA
*
69205536 ATGTATAGAATACA-ATATTAAAAT
1 ATGTACAGAATACACATATTAAAAT
* *
69205560 ATTTACATAATACACATATTAAAA
1 ATGTACAGAATACACATATTAAAA
69205584 ATAACTAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.33
Consensus pattern (25 bp):
ATGTACAGAATACACATATTAAAAT
Found at i:69205594 original size:25 final size:24
Alignment explanation
Indices: 69205544--69205596 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
69205534 TAATGTATAG
**
69205544 AATACAATATTAAAATATTTACAT
1 AATACAATATTAAAATAACTACAT
69205568 AATACACATATTAAAAATAACTA-AT
1 AATACA-ATATT-AAAATAACTACAT
69205593 AATA
1 AATA
69205597 ATATTCCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.24
25 11 0.44
26 8 0.32
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.32
Consensus pattern (24 bp):
AATACAATATTAAAATAACTACAT
Found at i:69207278 original size:14 final size:14
Alignment explanation
Indices: 69207259--69207287 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
69207249 CAATGTATCG
69207259 AACATAGGGCTCAC
1 AACATAGGGCTCAC
69207273 AACATAGGGCTCAC
1 AACATAGGGCTCAC
69207287 A
1 A
69207288 TAAGGGGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.28, G:0.21, T:0.14
Consensus pattern (14 bp):
AACATAGGGCTCAC
Found at i:69208503 original size:18 final size:19
Alignment explanation
Indices: 69208470--69208559 Score: 65
Period size: 19 Copynumber: 4.5 Consensus size: 19
69208460 CAAAATTTAC
69208470 ATTTTATAAATTTTT-ACAA
1 ATTTT-TAAATTTTTAACAA
*
69208489 ATTTTTAATTTTTTAACAA
1 ATTTTTAAATTTTTAACAA
* *
69208508 TTTTTTAAAAATTTTTTAAATAA
1 ATTTTT--AAA-TTTTT-AACAA
* * *
69208531 AATTTAAAATTTATTAACTA
1 ATTTTTAAATTT-TTAACAA
69208551 ATTTTTAAA
1 ATTTTTAAA
69208560 ATGTTTTTTA
Statistics
Matches: 54, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
18 8 0.15
19 14 0.26
20 13 0.24
21 7 0.13
22 5 0.09
23 7 0.13
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTTTTAAATTTTTAACAA
Found at i:69208523 original size:12 final size:11
Alignment explanation
Indices: 69208495--69208527 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
69208485 ACAAATTTTT
*
69208495 AATTTTTTAAC
1 AATTTTTTAAA
69208506 AATTTTTTAAA
1 AATTTTTTAAA
69208517 AATTTTTTAAA
1 AATTTTTTAAA
69208528 TAAAATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (11 bp):
AATTTTTTAAA
Found at i:69208539 original size:21 final size:21
Alignment explanation
Indices: 69208515--69208567 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
69208505 CAATTTTTTA
69208515 AAAATTTTTTAAATAAAATTT
1 AAAATTTTTTAAATAAAATTT
* * **
69208536 AAAATTTATTAACTAATTTTT
1 AAAATTTTTTAAATAAAATTT
69208557 AAAATGTTTTT
1 AAAAT-TTTTT
69208568 TATTTTTCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
AAAATTTTTTAAATAAAATTT
Found at i:69208694 original size:20 final size:20
Alignment explanation
Indices: 69208657--69208742 Score: 57
Period size: 20 Copynumber: 4.3 Consensus size: 20
69208647 GACAATCAAC
* *
69208657 TTGATCAACGTGCTATGTCA
1 TTGATCAACCTGCCATGTCA
*
69208677 TTGATGAACCTGCCATGTCA
1 TTGATCAACCTGCCATGTCA
* * ** *
69208697 -CGGTCAATGTGTCATGTCA
1 TTGATCAACCTGCCATGTCA
* **
69208716 TTGGTCAACCTATCATGTCA
1 TTGATCAACCTGCCATGTCA
*
69208736 TTAATCA
1 TTGATCA
69208743 CATGACACAT
Statistics
Matches: 50, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
19 13 0.26
20 37 0.74
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (20 bp):
TTGATCAACCTGCCATGTCA
Found at i:69219144 original size:17 final size:17
Alignment explanation
Indices: 69219120--69219154 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
69219110 CAATATCATC
*
69219120 CAAAAAAAAGAAAAAATA
1 CAAAAAAAA-TAAAAATA
69219138 CAAAAAAAATAAAAATA
1 CAAAAAAAATAAAAATA
69219155 AGTTACACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.83, C:0.06, G:0.03, T:0.09
Consensus pattern (17 bp):
CAAAAAAAATAAAAATA
Found at i:69220942 original size:16 final size:16
Alignment explanation
Indices: 69220921--69220952 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
69220911 CGTTTGGTTC
69220921 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
69220937 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
69220953 ATTGTATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.31, T:0.25
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:69220958 original size:16 final size:16
Alignment explanation
Indices: 69220922--69220958 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
69220912 GTTTGGTTCG
*
69220922 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAA
69220938 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAA
*
69220954 TTGTA
1 CTGTA
69220959 TTCAGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.27, T:0.30
Consensus pattern (16 bp):
CTGTAATGGAATAGAA
Found at i:69223375 original size:53 final size:53
Alignment explanation
Indices: 69223303--69223417 Score: 158
Period size: 53 Copynumber: 2.2 Consensus size: 53
69223293 AAGAAAGAAA
* * * * * *
69223303 GAAAGAAAAATGTTGCAACTCTGCAACTAAAGGGTTTTGTTGGCTTAAAGGGT
1 GAAAAAAAAAAGTTACAACTCTGCAACCAAAGGATCTTGTTGGCTTAAAGGGT
*
69223356 GAAAAAAAAAAGTTACAACTCTGCAACCAAATGATCTTGTTGGCTTAAAGGGT
1 GAAAAAAAAAAGTTACAACTCTGCAACCAAAGGATCTTGTTGGCTTAAAGGGT
*
69223409 GAAGAAAAA
1 GAAAAAAAA
69223418 TGTAACACCC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.24
Consensus pattern (53 bp):
GAAAAAAAAAAGTTACAACTCTGCAACCAAAGGATCTTGTTGGCTTAAAGGGT
Found at i:69227468 original size:6 final size:6
Alignment explanation
Indices: 69227425--69227497 Score: 83
Period size: 6 Copynumber: 11.8 Consensus size: 6
69227415 AGAAACAACC
* * * *
69227425 ATAAAA ATAGAAA GAGAAAA ATAACA AGAAAG ATAAAA ATAAAA ATAAAA
1 ATAAAA ATA-AAA -ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
*
69227475 ATAAAA ATAAAA ATAAAG ATAAA
1 ATAAAA ATAAAA ATAAAA ATAAA
69227498 TAGACTCAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
6 48 0.86
7 6 0.11
8 2 0.04
ACGTcount: A:0.77, C:0.01, G:0.08, T:0.14
Consensus pattern (6 bp):
ATAAAA
Found at i:69228091 original size:40 final size:39
Alignment explanation
Indices: 69228034--69228185 Score: 152
Period size: 40 Copynumber: 3.8 Consensus size: 39
69228024 TTTGGTGGCT
*
69228034 TTAGCGGCGC-TTTCTAAAAACGCAGCTAAAGATCGAGTA
1 TTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGATC-AGTA
* * *
69228073 TTAGCGGCACTTTTCTAAAAACGCCGCTATATG-TACACCT-
1 TTAGCGGCGCTTTTCTAAAAACGCCGCTA-AAGAT-CA-GTA
* *
69228113 TTAGCGACGCTTTT-TAGAAAACGCCGCTAAAGATCAAGCA
1 TTAGCGGCGCTTTTCTA-AAAACGCCGCTAAAGATC-AGTA
69228153 TTAGCGGCG-TTTTCTAAAAAGCGCCGCTAAAGA
1 TTAGCGGCGCTTTTCTAAAAA-CGCCGCTAAAGA
69228186 ATTTTGTAAT
Statistics
Matches: 93, Mismatches: 10, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
39 22 0.24
40 67 0.72
41 4 0.04
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (39 bp):
TTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGATCAGTA
Found at i:69228178 original size:80 final size:79
Alignment explanation
Indices: 69228032--69228181 Score: 221
Period size: 80 Copynumber: 1.9 Consensus size: 79
69228022 CCTTTGGTGG
* * *
69228032 CTTTAGCGGCGCTTTCTAAAAACGCAGCTAAAGATCGAGTATTAGCGGCACTTTTCTAAAAACGC
1 CTTTAGCGACGCTTTCTAAAAACGCAGCTAAAGATCAAGCATTAGCGGCACTTTTCTAAAAACGC
69228097 CGCTATATGTACAC
66 CGCTATATGTACAC
* * *
69228111 CTTTAGCGACGCTTTTTAGAAAACGCCGCTAAAGATCAAGCATTAGCGGC-GTTTTCTAAAAAGC
1 CTTTAGCGACGCTTTCTA-AAAACGCAGCTAAAGATCAAGCATTAGCGGCACTTTTCTAAAAA-C
69228175 GCCGCTA
64 GCCGCTA
69228182 AAGAATTTTG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
79 27 0.43
80 36 0.57
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (79 bp):
CTTTAGCGACGCTTTCTAAAAACGCAGCTAAAGATCAAGCATTAGCGGCACTTTTCTAAAAACGC
CGCTATATGTACAC
Found at i:69228235 original size:132 final size:132
Alignment explanation
Indices: 69228073--69228314 Score: 348
Period size: 132 Copynumber: 1.8 Consensus size: 132
69228063 AGATCGAGTA
* *
69228073 TTAGCGGCACTTTTCTAAAAACGCCGCTATATGTACACCTTTAGCGACGCTTTTTAGAAAACGCC
1 TTAGCGGCACTTTTCTAAAAACGCCGCTATAAGTACACCTTTAGCGACGCTTTTTAAAAAACGCC
* *
69228138 GCTA-AAG-ATCAAGCATTAGCGGCG-TTTTCTAAAAAGCGCCGCTAAAGAATTTTGTAATTTAG
66 GCTATAAGTA-C-ACCATTAGCGGCGCTTTT-TAAAAAACGCCGCTAAAGAATTTTGTAATTTAG
69228200 TGGCT
128 TGGCT
* * *
69228205 TTAGCGGCGCTTTT-TAAGAAACGCCTCTATAAGTATACCTTTAGCGACGCTTTTTAAAAAACGC
1 TTAGCGGCACTTTTCTAA-AAACGCCGCTATAAGTACACCTTTAGCGACGCTTTTTAAAAAACGC
*
69228269 CGCTATAAGTACACCTTTAGCGGCGCTTTTTAAAAAACGCCGCTAA
65 CGCTATAAGTACACCATTAGCGGCGCTTTTTAAAAAACGCCGCTAA
69228315 TGCTCAATTT
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
131 3 0.03
132 86 0.88
133 8 0.08
134 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (132 bp):
TTAGCGGCACTTTTCTAAAAACGCCGCTATAAGTACACCTTTAGCGACGCTTTTTAAAAAACGCC
GCTATAAGTACACCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGAATTTTGTAATTTAGTGG
CT
Found at i:69228339 original size:40 final size:40
Alignment explanation
Indices: 69228203--69228313 Score: 186
Period size: 40 Copynumber: 2.8 Consensus size: 40
69228193 AATTTAGTGG
* * *
69228203 CTTTAGCGGCGCTTTTTAAGAAACGCCTCTATAAGTATAC
1 CTTTAGCGGCGCTTTTTAAAAAACGCCGCTATAAGTACAC
*
69228243 CTTTAGCGACGCTTTTTAAAAAACGCCGCTATAAGTACAC
1 CTTTAGCGGCGCTTTTTAAAAAACGCCGCTATAAGTACAC
69228283 CTTTAGCGGCGCTTTTTAAAAAACGCCGCTA
1 CTTTAGCGGCGCTTTTTAAAAAACGCCGCTA
69228314 ATGCTCAATT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (40 bp):
CTTTAGCGGCGCTTTTTAAAAAACGCCGCTATAAGTACAC
Found at i:69228432 original size:23 final size:23
Alignment explanation
Indices: 69228406--69228450 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
69228396 AGATTTTTGG
*
69228406 TATATGATTAATTGTTTT-TTATT
1 TATATG-TTAATTATTTTCTTATT
69228429 TATATGTTAATTATTTTCTTAT
1 TATATGTTAATTATTTTCTTAT
69228451 ATAATTGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.64
Consensus pattern (23 bp):
TATATGTTAATTATTTTCTTATT
Found at i:69228665 original size:22 final size:21
Alignment explanation
Indices: 69228613--69228675 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
69228603 ATGGGTTAAA
*
69228613 GGTTAA-GGTTTAAGTTTTAG
1 GGTTAAGGGTTTAAGGTTTAG
**
69228633 GGTATTGGGGTTTAAGGTTTAGG
1 GGT-TAAGGGTTTAAGGTTTA-G
69228656 GGTTAAGGG-TTAAGGGTTTA
1 GGTTAAGGGTTTAA-GGTTTA
69228676 TGTTTTATTG
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
20 3 0.09
21 5 0.15
22 22 0.65
23 4 0.12
ACGTcount: A:0.22, C:0.00, G:0.38, T:0.40
Consensus pattern (21 bp):
GGTTAAGGGTTTAAGGTTTAG
Found at i:69229894 original size:43 final size:43
Alignment explanation
Indices: 69229848--69230003 Score: 199
Period size: 43 Copynumber: 3.7 Consensus size: 43
69229838 TAATTTTTTA
*
69229848 AAAGGTCAT-ATTTTTAGCGGCGTTTTTAGGAAAAGCGCCGCT
1 AAAGGTCATGATCTTTAGCGGCGTTTTTAGGAAAAGCGCCGCT
* * * *
69229890 AAAAGTCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
1 AAAGGTCATGATCTTTAGCGGCGTTTTTAGGAAAAGCGCCGCT
* * *
69229933 AAAGGTCCTGGTCTTTAGCGGCGTTTTTTA-AAAAAGCGCCGCT
1 AAAGGTCATGATCTTTAGCGGCG-TTTTTAGGAAAAGCGCCGCT
* *
69229976 AAAGGTCCTGATTTTTAGCGGCGTTTTT
1 AAAGGTCATGATCTTTAGCGGCGTTTTT
69230004 TTCTAAAAAA
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
42 13 0.13
43 81 0.83
44 4 0.04
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
AAAGGTCATGATCTTTAGCGGCGTTTTTAGGAAAAGCGCCGCT
Found at i:69237206 original size:23 final size:27
Alignment explanation
Indices: 69237180--69237235 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
69237170 ATATAAAATT
69237180 TAAATATTT-TAA-A-GTAA-TTAATA
1 TAAATATTTGTAAGATGTAATTTAATA
*
69237203 TAAATTATTTGTAAGATTTAATTTAATA
1 TAAA-TATTTGTAAGATGTAATTTAATA
69237231 TAAAT
1 TAAAT
69237236 TTTAAATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 4 0.15
24 5 0.19
25 3 0.11
26 1 0.04
27 4 0.15
28 10 0.37
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.46
Consensus pattern (27 bp):
TAAATATTTGTAAGATGTAATTTAATA
Found at i:69241267 original size:23 final size:25
Alignment explanation
Indices: 69241213--69241323 Score: 117
Period size: 23 Copynumber: 4.6 Consensus size: 25
69241203 TATCATGTAT
* *
69241213 GCTCTTTCGAGCT-ATGATCAGTAA
1 GCTCTATCGAGCTGATGAACAGTAA
* *
69241237 GCTCCTCTTGAGCTGATGAACAGTAA
1 GCT-CTATCGAGCTGATGAACAGTAA
*
69241263 GCTCTATCGAGCTGA--AACGGTAA
1 GCTCTATCGAGCTGATGAACAGTAA
69241286 GCTCTATCGAGC---TGAACAGTAA
1 GCTCTATCGAGCTGATGAACAGTAA
*
69241308 GCTCTTTCGAGCTGAT
1 GCTCTATCGAGCTGAT
69241324 ATATCGGTAA
Statistics
Matches: 72, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
22 18 0.25
23 19 0.26
24 3 0.04
25 19 0.26
26 13 0.18
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
GCTCTATCGAGCTGATGAACAGTAA
Found at i:69241305 original size:45 final size:48
Alignment explanation
Indices: 69241253--69241346 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 48
69241243 CTTGAGCTGA
69241253 TGAACAGTAAGCTCTATCGAGCTGA-A-A-CGGTAAGCTC-TATCGAGC
1 TGAACAGTAAGCTCTATCGAGCTGATATATCGGTAAGCTCATAT-GAGC
*
69241298 TGAACAGTAAGCTCTTTCGAGCTGATATATCGGTAAGCTCATATGAGC
1 TGAACAGTAAGCTCTATCGAGCTGATATATCGGTAAGCTCATATGAGC
69241346 T
1 T
69241347 ATGGTGAGTC
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
45 24 0.55
46 1 0.02
47 1 0.02
48 15 0.34
49 3 0.07
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (48 bp):
TGAACAGTAAGCTCTATCGAGCTGATATATCGGTAAGCTCATATGAGC
Found at i:69241310 original size:22 final size:22
Alignment explanation
Indices: 69241253--69241322 Score: 113
Period size: 22 Copynumber: 3.1 Consensus size: 22
69241243 CTTGAGCTGA
69241253 TGAACAGTAAGCTCTATCGAGC
1 TGAACAGTAAGCTCTATCGAGC
*
69241275 TGAAACGGTAAGCTCTATCGAGC
1 TG-AACAGTAAGCTCTATCGAGC
*
69241298 TGAACAGTAAGCTCTTTCGAGC
1 TGAACAGTAAGCTCTATCGAGC
69241320 TGA
1 TGA
69241323 TATATCGGTA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
22 23 0.52
23 21 0.48
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATCGAGC
Found at i:69243432 original size:74 final size:74
Alignment explanation
Indices: 69243311--69243454 Score: 288
Period size: 74 Copynumber: 1.9 Consensus size: 74
69243301 TTTTATAAAC
69243311 TGTCGACACTTAGTATGGTCTATTTTGGTCTAGCACATGATCTTTATCTATAAAGAACAAGAGTC
1 TGTCGACACTTAGTATGGTCTATTTTGGTCTAGCACATGATCTTTATCTATAAAGAACAAGAGTC
69243376 TTACTCAAG
66 TTACTCAAG
69243385 TGTCGACACTTAGTATGGTCTATTTTGGTCTAGCACATGATCTTTATCTATAAAGAACAAGAGTC
1 TGTCGACACTTAGTATGGTCTATTTTGGTCTAGCACATGATCTTTATCTATAAAGAACAAGAGTC
69243450 TTACT
66 TTACT
69243455 TGAGTAAGGA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 70 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (74 bp):
TGTCGACACTTAGTATGGTCTATTTTGGTCTAGCACATGATCTTTATCTATAAAGAACAAGAGTC
TTACTCAAG
Found at i:69243717 original size:19 final size:20
Alignment explanation
Indices: 69243684--69243725 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
69243674 TTTTCTATTC
* *
69243684 ATTAAAATATTATTTATTTA
1 ATTAAAATATAATTTAATTA
69243704 ATTAAAAT-TAATTTAATTA
1 ATTAAAATATAATTTAATTA
69243723 ATT
1 ATT
69243726 TTCTTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
ATTAAAATATAATTTAATTA
Found at i:69243743 original size:17 final size:18
Alignment explanation
Indices: 69243711--69243756 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 18
69243701 TTAATTAAAA
69243711 TTAATTTAATTAATTTTC
1 TTAATTTAATTAATTTTC
*
69243729 TTAATTAAATT-ATTTTC
1 TTAATTTAATTAATTTTC
*
69243746 TCAATTTAATT
1 TTAATTTAATT
69243757 CTAATTTCGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.59
Consensus pattern (18 bp):
TTAATTTAATTAATTTTC
Found at i:69249081 original size:2 final size:2
Alignment explanation
Indices: 69249074--69249109 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
69249064 TGGTATTTAC
69249074 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69249110 TTTCTCTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69250743 original size:22 final size:22
Alignment explanation
Indices: 69250715--69250762 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
69250705 ATGCAATAGG
69250715 TTTGATATCCATTATTTCTTGA
1 TTTGATATCCATTATTTCTTGA
*
69250737 TTTGATATCCATTATTTCTTTA
1 TTTGATATCCATTATTTCTTGA
69250759 TTTG
1 TTTG
69250763 CTTTTTGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.21, C:0.12, G:0.08, T:0.58
Consensus pattern (22 bp):
TTTGATATCCATTATTTCTTGA
Found at i:69261805 original size:10 final size:11
Alignment explanation
Indices: 69261785--69261831 Score: 55
Period size: 10 Copynumber: 4.5 Consensus size: 11
69261775 TTAGGATTTG
69261785 TTTTCATTTATC
1 TTTT-ATTTATC
69261797 TTTTA-TTATC
1 TTTTATTTATC
69261807 -TTTATTTAT-
1 TTTTATTTATC
*
69261816 TTGTATTTATC
1 TTTTATTTATC
69261827 TTTTA
1 TTTTA
69261832 GAATTTAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
9 4 0.13
10 17 0.57
11 5 0.17
12 4 0.13
ACGTcount: A:0.19, C:0.09, G:0.02, T:0.70
Consensus pattern (11 bp):
TTTTATTTATC
Found at i:69262773 original size:17 final size:16
Alignment explanation
Indices: 69262746--69262777 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
69262736 TAATTGTGTG
69262746 AAAAAATAAATAAATA
1 AAAAAATAAATAAATA
69262762 AAAAAATAAAATAAAT
1 AAAAAAT-AAATAAAT
69262778 TGTGACAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAAAATAAATAAATA
Found at i:69266520 original size:40 final size:40
Alignment explanation
Indices: 69266426--69266570 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
69266416 TACTCGAATG
*
69266426 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGCGACT
* * *
69266467 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGCGACT
* *
69266507 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
*
69266547 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
69266571 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 27 0.29
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
Found at i:69267633 original size:31 final size:31
Alignment explanation
Indices: 69267577--69267669 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
69267567 CCTTTTCATA
*
69267577 TTTCATA-TTCATAATACT-GGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
69267606 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
69267637 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
69267668 TT
1 TT
69267670 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
29 7 0.11
30 10 0.16
31 44 0.72
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:69267925 original size:24 final size:24
Alignment explanation
Indices: 69267861--69268002 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
69267851 GCTTTATCAT
*
69267861 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
69267886 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
69267909 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
69267932 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
69267956 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
69267980 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69268003 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
23 40 0.36
24 63 0.57
25 8 0.07
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69267950 original size:47 final size:48
Alignment explanation
Indices: 69267861--69268001 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
69267851 GCTTTATCAT
*
69267861 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
69267909 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
69267956 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
69268002 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
46 12 0.14
47 41 0.47
48 34 0.39
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:69267976 original size:71 final size:71
Alignment explanation
Indices: 69267860--69268002 Score: 218
Period size: 71 Copynumber: 2.0 Consensus size: 71
69267850 TGCTTTATCA
*
69267860 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCAATAACTGGGGCATAAG
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCAATAACTGGGGCATAAG
69267925 CCCTTT
66 CCCTTT
* **
69267931 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTCAATAACTGGGGCATA
69267994 AGCCCTTT
64 AGCCCTTT
69268002 T
1 T
69268003 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
70 21 0.32
71 45 0.68
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:69268078 original size:20 final size:20
Alignment explanation
Indices: 69268053--69268112 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
69268043 TATGATTACC
69268053 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
69268073 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
69268093 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
69268113 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:69268083 original size:11 final size:11
Alignment explanation
Indices: 69268053--69268107 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
69268043 TATGATTACC
69268053 TCATGTGCATA
1 TCATGTGCATA
*
69268064 TCA--TACATA
1 TCATGTGCATA
69268073 TCATGTGCATA
1 TCATGTGCATA
* *
69268084 TCA--TACATT
1 TCATGTGCATA
69268093 TCATGTGCATA
1 TCATGTGCATA
69268104 TCAT
1 TCAT
69268108 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:69268187 original size:25 final size:25
Alignment explanation
Indices: 69268155--69268202 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69268145 ATACATAAAC
* * *
69268155 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69268180 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69268203 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69275733 original size:31 final size:31
Alignment explanation
Indices: 69275695--69275787 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
69275685 CCTTTTCATA
69275695 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
69275726 TTTCATATTTCAT-ATA-TGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
69275755 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
69275786 TT
1 TT
69275788 ACTGTAAACG
Statistics
Matches: 59, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
29 26 0.44
30 5 0.08
31 28 0.47
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:69276030 original size:24 final size:24
Alignment explanation
Indices: 69275979--69276097 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
69275969 GCTTTATCAT
*
69275979 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
69276004 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
69276028 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
69276051 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
69276075 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69276098 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69276058 original size:47 final size:48
Alignment explanation
Indices: 69275979--69276097 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
69275969 GCTTTATCAT
*
69275979 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
69276028 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
69276075 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69276098 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:69276173 original size:20 final size:20
Alignment explanation
Indices: 69276148--69276207 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
69276138 TATGATTACC
69276148 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
69276168 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
69276188 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
69276208 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:69276178 original size:11 final size:11
Alignment explanation
Indices: 69276148--69276202 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
69276138 TATGATTACC
69276148 TCATGTGCATA
1 TCATGTGCATA
*
69276159 TCA--TACATA
1 TCATGTGCATA
69276168 TCATGTGCATA
1 TCATGTGCATA
* *
69276179 TCA--TACATT
1 TCATGTGCATA
69276188 TCATGTGCATA
1 TCATGTGCATA
69276199 TCAT
1 TCAT
69276203 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:69276282 original size:25 final size:25
Alignment explanation
Indices: 69276250--69276297 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69276240 ATACATAAAC
* * *
69276250 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69276275 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69276298 CTTATAAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69288016 original size:30 final size:31
Alignment explanation
Indices: 69287962--69288055 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
69287952 CCTTTTCATA
*
69287962 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
69287993 TTTCATATTTCATATTA-TGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
69288023 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
69288054 TT
1 TT
69288056 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
30 30 0.49
31 31 0.51
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:69288298 original size:24 final size:24
Alignment explanation
Indices: 69288247--69288365 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
69288237 GCTTTATCAT
*
69288247 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
69288272 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
69288296 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
69288319 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
69288343 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69288366 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69288326 original size:47 final size:48
Alignment explanation
Indices: 69288247--69288365 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
69288237 GCTTTATCAT
*
69288247 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
69288296 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
69288343 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69288366 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:69288441 original size:20 final size:20
Alignment explanation
Indices: 69288416--69288475 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
69288406 TATGATTACC
69288416 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
69288436 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
69288456 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
69288476 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:69288446 original size:11 final size:11
Alignment explanation
Indices: 69288416--69288470 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
69288406 TATGATTACC
69288416 TCATGTGCATA
1 TCATGTGCATA
*
69288427 TCA--TACATA
1 TCATGTGCATA
69288436 TCATGTGCATA
1 TCATGTGCATA
* *
69288447 TCA--TACATT
1 TCATGTGCATA
69288456 TCATGTGCATA
1 TCATGTGCATA
69288467 TCAT
1 TCAT
69288471 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:69288550 original size:25 final size:25
Alignment explanation
Indices: 69288518--69288565 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69288508 ATACATAAAC
* * *
69288518 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69288543 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69288566 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69297886 original size:39 final size:40
Alignment explanation
Indices: 69297773--69297916 Score: 193
Period size: 39 Copynumber: 3.6 Consensus size: 40
69297763 TACTCGAATG
*
69297773 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
* *
69297814 ACATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * *
69297854 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
*
69297893 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
69297917 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 36 0.39
40 27 0.29
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:69308004 original size:23 final size:25
Alignment explanation
Indices: 69307978--69308023 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
69307968 TATCATTCAT
*
69307978 TTCATTATAT-CA-ATATTTTATAC
1 TTCATCATATCCATATATTTTATAC
*
69308001 TTCATCATTTCCATATATTTTAT
1 TTCATCATATCCATATATTTTAT
69308024 GTATATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 2 0.11
25 9 0.47
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.54
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATAC
Found at i:69308347 original size:46 final size:46
Alignment explanation
Indices: 69308295--69308549 Score: 323
Period size: 46 Copynumber: 5.7 Consensus size: 46
69308285 TGTCATAGTG
* * * *
69308295 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
* ** * * *
69308341 TCTTTCAACTATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
69308387 TCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCAT-GTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
69308432 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
69308478 TCTTTCAACCATGGTCTT--ACA---C--A-CAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
69308516 TCTTTCAACCATAGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
69308550 AGAGCACACT
Statistics
Matches: 187, Mismatches: 12, Indels: 20
0.85 0.05 0.09
Matches are distributed among these distances:
38 32 0.17
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 49 0.26
46 97 0.52
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:69308448 original size:91 final size:92
Alignment explanation
Indices: 69308295--69308548 Score: 321
Period size: 91 Copynumber: 2.9 Consensus size: 92
69308285 TGTCATAGTG
* * * * * *
69308295 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACTATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTCTCTATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * *
69308360 TTCTTTTCATGTCACGTTGCCATGGTA
66 CACATTTCATATCACGTTGCCATGGTA
69308387 TCTTTCAACCATGGTCTTACACA-TCTCATATCAGGTTGCCAT-GTATCTTTCAACCATGGTCTT
1 TCTTTCAACCATGGTCTTACACATTCTC-TATCAGGTTGCCATGGTATCTTTCAACCATGGTCTT
*
69308450 ACACATTTCATATCAGGTTGCCATGGTA
65 ACACATTTCATATCACGTTGCCATGGTA
*
69308478 TCTTTCAACCATGGTCTT--ACA----C-A-CAGGTTGCCATGGTATCTTTCAACCATAGTCTTA
1 TCTTTCAACCATGGTCTTACACATTCTCTATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
69308535 CACATTTCATATCA
66 CACATTTCATATCA
69308549 GAGAGCACAC
Statistics
Matches: 148, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
83 11 0.07
84 36 0.24
86 1 0.01
89 3 0.02
91 64 0.43
92 33 0.22
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (92 bp):
TCTTTCAACCATGGTCTTACACATTCTCTATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
CACATTTCATATCACGTTGCCATGGTA
Found at i:69308514 original size:38 final size:38
Alignment explanation
Indices: 69308463--69308538 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
69308453 CATTTCATAT
*
69308463 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
69308501 CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
69308539 TTTCATATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
Found at i:69313958 original size:16 final size:18
Alignment explanation
Indices: 69313937--69313969 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
69313927 GATATGATAC
69313937 TAAAAT-TAT-TAAAAAT
1 TAAAATATATATAAAAAT
69313953 TAAAATATATATAAAAA
1 TAAAATATATATAAAAA
69313970 AAGGGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 3 0.20
18 6 0.40
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAATATATATAAAAAT
Found at i:69314258 original size:22 final size:21
Alignment explanation
Indices: 69314223--69314298 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
69314213 AAAAGGTATC
* *
69314223 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
69314244 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
69314267 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
69314286 TGC-AATCATATCT
1 TACAAATCATATCT
69314299 AAAATTGCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:69314283 original size:19 final size:19
Alignment explanation
Indices: 69314259--69314332 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
69314249 AATCATATCT
69314259 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
69314278 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
69314296 TCTAAAATTGCATATCATA
1 TCTAAGATTGCATATCATA
69314315 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
69314333 TGAAGATTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 17 0.33
19 35 0.67
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:69314306 original size:37 final size:38
Alignment explanation
Indices: 69314252--69314332 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 38
69314242 ATTACAAAAT
*
69314252 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAAATTGCATATCATATCTAAGATTG
69314288 CA-ATCATATCTAAAATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAAATTGCATATCATATCTAAGATTG
69314325 CATATCAT
1 CATATCAT
69314333 TGAAGATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 30 0.73
38 5 0.12
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (38 bp):
CATATCATATCTAAAATTGCATATCATATCTAAGATTG
Found at i:69318742 original size:17 final size:18
Alignment explanation
Indices: 69318706--69318751 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
69318696 TATTGTTTGG
69318706 ATATTGTATAACTCTTGTT
1 ATATTGT-TAACTCTTGTT
*
69318725 ATATTGTTAA-TTTTGTT
1 ATATTGTTAACTCTTGTT
69318742 ACTATT-TTAA
1 A-TATTGTTAA
69318752 AGGCATCTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 11 0.44
18 7 0.28
19 7 0.28
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.57
Consensus pattern (18 bp):
ATATTGTTAACTCTTGTT
Found at i:69323050 original size:32 final size:32
Alignment explanation
Indices: 69323009--69323073 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
69322999 GGACTGCCCC
69323009 AGCTGGCACAATTGAGGACAATAATAAAACTA
1 AGCTGGCACAATTGAGGACAATAATAAAACTA
*
69323041 AGCTGGCACAATTGAGGACAATATTAAAACTA
1 AGCTGGCACAATTGAGGACAATAATAAAACTA
69323073 A
1 A
69323074 CTTCGAATGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.20
Consensus pattern (32 bp):
AGCTGGCACAATTGAGGACAATAATAAAACTA
Found at i:69335567 original size:30 final size:30
Alignment explanation
Indices: 69335533--69335595 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
69335523 TCAAAATATA
*
69335533 AGATAGTCAGCATTAAAGAAACTAAAAAGT
1 AGATAGTCAGCATAAAAGAAACTAAAAAGT
69335563 AGATAGTCAGCATAAAAGAAACTAAAAAGT
1 AGATAGTCAGCATAAAAGAAACTAAAAAGT
69335593 AGA
1 AGA
69335596 ATGTTTATAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.56, C:0.10, G:0.17, T:0.17
Consensus pattern (30 bp):
AGATAGTCAGCATAAAAGAAACTAAAAAGT
Found at i:69338892 original size:2 final size:2
Alignment explanation
Indices: 69338887--69338923 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
69338877 AATATCCTTT
69338887 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
69338924 TCTAAATACG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:69340188 original size:20 final size:21
Alignment explanation
Indices: 69340135--69340197 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
69340125 AAAACGGGTA
*
69340135 TTAATA-T-TATTAAATATTT
1 TTAATATTATATTAATTATTT
* *
69340154 TTAATGTTATTTTAATTATTT
1 TTAATATTATATTAATTATTT
*
69340175 TTAA-ATTCTATTAATTATGTT
1 TTAATATTATATTAATTAT-TT
69340196 TT
1 TT
69340198 TAATCCTTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 5 0.14
20 12 0.34
21 18 0.51
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (21 bp):
TTAATATTATATTAATTATTT
Found at i:69343405 original size:24 final size:23
Alignment explanation
Indices: 69343336--69343405 Score: 56
Period size: 24 Copynumber: 3.0 Consensus size: 23
69343326 ATAATGTTAA
*
69343336 AATTA-AATTATAACTATTTTTA-
1 AATTATAATTAT-ACAATTTTTAT
* *
69343358 ACTAATAATTATA-AATTATATTAT
1 AATTATAATTATACAATT-T-TTAT
69343382 AATTATAATTATCACAATTTTTAT
1 AATTATAATTAT-ACAATTTTTAT
69343406 TATATTTTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
21 3 0.08
22 5 0.14
23 9 0.24
24 14 0.38
25 2 0.05
26 4 0.11
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (23 bp):
AATTATAATTATACAATTTTTAT
Found at i:69347897 original size:25 final size:28
Alignment explanation
Indices: 69347847--69347898 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 28
69347837 CAATATTTTT
*
69347847 GCATGAAAATTGATATGATAGGAAAATC
1 GCATGAAAATTGATATGATAGAAAAATC
69347875 GCATGAAAA-T-AT-TGATAGAAAAAT
1 GCATGAAAATTGATATGATAGAAAAAT
69347899 TTTACCGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 11 0.48
26 2 0.09
27 1 0.04
28 9 0.39
ACGTcount: A:0.50, C:0.06, G:0.19, T:0.25
Consensus pattern (28 bp):
GCATGAAAATTGATATGATAGAAAAATC
Found at i:69361276 original size:30 final size:30
Alignment explanation
Indices: 69361240--69361297 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
69361230 CACAGACTAG
*
69361240 CACATGGGCGTATGGCCAGCTCGTGTGGCT
1 CACATGGGCGTATGGCCAGCCCGTGTGGCT
*
69361270 CACATGGGCGTGTGGCCAGCCCGTGTGG
1 CACATGGGCGTATGGCCAGCCCGTGTGG
69361298 AAATGCCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.12, C:0.28, G:0.40, T:0.21
Consensus pattern (30 bp):
CACATGGGCGTATGGCCAGCCCGTGTGGCT
Found at i:69363126 original size:6 final size:6
Alignment explanation
Indices: 69363115--69363159 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
69363105 AATAGACATA
69363115 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAA-T AAAA
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAA
69363160 GATAAAAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
5 5 0.13
6 34 0.87
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
AAAATT
Found at i:69363170 original size:6 final size:6
Alignment explanation
Indices: 69363112--69363190 Score: 68
Period size: 6 Copynumber: 12.7 Consensus size: 6
69363102 CAAAATAGAC
* * * * * *
69363112 ATAAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
*
69363160 GATAAAA ATAAAAAA ATAAAC ATAAAA ATAA
1 -ATAAAA AT--AAAA ATAAAA ATAAAA ATAA
69363191 TCAGACTCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
6 54 0.82
7 6 0.09
8 6 0.09
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.24
Consensus pattern (6 bp):
ATAAAA
Found at i:69363184 original size:20 final size:21
Alignment explanation
Indices: 69363151--69363190 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
69363141 AATTAAAATT
*
69363151 AAAATAAAAGATAAAAATAAA
1 AAAATAAAACATAAAAATAAA
69363172 AAAAT-AAACATAAAAATAA
1 AAAATAAAACATAAAAATAA
69363191 TCAGACTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.80, C:0.03, G:0.03, T:0.15
Consensus pattern (21 bp):
AAAATAAAACATAAAAATAAA
Found at i:69364870 original size:28 final size:28
Alignment explanation
Indices: 69364822--69364876 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
69364812 ATGGAAAGAC
* * *
69364822 AATAATAATGATATATAAAGAATAAATA
1 AATAATAAAGATACATAAAGAAAAAATA
69364850 AATAATAAAGA-ACATAGAAGAAAAAAT
1 AATAATAAAGATACATA-AAGAAAAAAT
69364877 CGATTGAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (28 bp):
AATAATAAAGATACATAAAGAAAAAATA
Found at i:69365281 original size:29 final size:29
Alignment explanation
Indices: 69365221--69365282 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
69365211 GACACGATTC
* * * *
69365221 TGTGAGCCTCGTGTTGAGCCATACGATAG
1 TGTGAGCCTCCTGTGGAGCCACACGACAG
* *
69365250 TGTGAGCCTCCTGTGGGGCCACACGACCG
1 TGTGAGCCTCCTGTGGAGCCACACGACAG
69365279 TGTG
1 TGTG
69365283 GCTCGAATCC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.16, C:0.26, G:0.34, T:0.24
Consensus pattern (29 bp):
TGTGAGCCTCCTGTGGAGCCACACGACAG
Found at i:69375733 original size:2 final size:2
Alignment explanation
Indices: 69375726--69375768 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
69375716 ATATGCATGA
69375726 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69375768 A
1 A
69375769 CGTGCATGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:69380529 original size:19 final size:16
Alignment explanation
Indices: 69380500--69380548 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 16
69380490 TAGTAATTGA
69380500 TTAT-TTTTTAAAATT
1 TTATATTTTTAAAATT
69380515 TTAATATAGTTTTAATAATT
1 TT-ATAT--TTTTAA-AATT
69380535 TTATATTTTTAAAA
1 TTATATTTTTAAAA
69380549 ATTAAATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
15 2 0.07
16 4 0.14
17 7 0.24
19 10 0.34
20 6 0.21
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (16 bp):
TTATATTTTTAAAATT
Found at i:69386261 original size:989 final size:986
Alignment explanation
Indices: 69384124--69387245 Score: 4165
Period size: 989 Copynumber: 3.2 Consensus size: 986
69384114 ACACTTATGC
69384124 ATACAAGTCTTCTCAATTTATAATGAAATGAGACTTGCTAACATACTAGATAAATGACAATCAAT
1 ATACAAGTCTTCTCAATTTATAATGAAATGAGACTTGCTAACATACTAGATAAATGACAATCAAT
* ** * *
69384189 CTTCCAAC-AAAACAACAAGATAATAAGCTAAAACAATAATGAATTCAGATT-TTTTTAATTTTA
66 CTTCCAACTAAAACAACAAGATAATCAGCTCTAACAATAATGGATTCGGATTCTTTTTAATTTTA
* * *
69384252 AAATTTTATGTACTTTTAATTATAAAAATCATTCAAAAAATAATTTTAATA-TTTTT-AAGTTAC
131 AATTTTTATTTACTTTTAATTATAAAAATCATTCTAAAAATAATTTTAATATTTTTTGAAGTTAC
* * * *
69384315 AATTATATTTAATATATCTATATAACAATAATAACAATTGATTAGTGCAATAAATAAACAAAATC
196 AATTATAATTAATATATCTATATAACAATAATCACAATTAATTAGTGCAATACATAAACAAAATC
* ** ** *
69384380 ACAAGTACGATTGATACATCCGTACAATTATGACTAGAATCAACCAATGCAATTTCATGCACAAA
261 ACAAATATAATCAATACATCCGTACAATTATGACTAGAATCAACCAATGCAATTTAATGCACAAA
* * * * *
69384445 TAGACATATTAATAATCAACGTATATACATATATGGAACGCACGTGTTAAGATTTAAATAAAAAA
326 CAGACATATTAATAATCAACGAATATA-GT-T-T---A-GAAC-TGTTAA-ATATAAATAAAAAA
* * * * *
69384510 AACTACGTACTGGAAACGCACAAATGATATTTATGCATGGTGGGAGTCAACCTGGTATCACAAAA
382 AACTACGTATTGAAAACCCACAAATGATATTTATGCATGGTGGGAGTCGACCTGGTATCACAAAG
*
69384575 TTTCTACTTTGCCATCAAACCAAGACCACATTGACAAAAGAATTTTAACATTAAAATAAACATCA
447 TTTCTACTTTGCCATCAAACCAAGACCACATTGACAAAAGAATTTTAATATTAAAATAAACATCA
*
69384640 AAGGTTAAGCGACTTAGACATAAGCAAGAAATTCTTTCATTATCTAAATTT-TTTTAATACAATC
512 AAGGTTAAGCGACTTAGACATAAGCAAGAAATTCTTTCATTATCTAAATTTGTTTCAATACAATC
* *
69384704 GTTGAATAATTCTATTAGTAAAATATAATTTAAATATTATGTATTATATTTTGAAAGTTCTAAAA
577 GTTGAATAATTCTACTAGTAAAATATAATTTAAATATTATATATTATATTTTGAAAGTTCT-AAA
* * * *
69384769 TGATATTTGCAAGCAAATTGAATAAG-ACCAACTATTTTCGACACTGATGATGAACAATAAAGAA
641 TGATACTTGCAAGCAAATTGAGT-AGTACCAACTATTTTCGACACTGATGAAGAATAATAAAG-A
* * * * ** * *
69384833 CACAACAATATATTTGCATAGTTTAGTTTCCATACATCAGCAAAGCCTTAGTTCTGATATAATCT
704 CACAACAATATGTTTGCGTAGTTTAGTTT-CATACATCAGCGAGGCCTTAGTAATGAGATAATCC
* ** * *
69384898 ATTTTCTTAATACTTTGTACAACAAGTAGTTACAAACACTAAGTCTCATAAAAATAGGATTACAC
768 ATTATCTTAGCACTTTGTACAACAAGTAGTTACAAACACTAACTCTCATAAAAATAGGATTTCAC
*
69384963 TTTTGTTCCTTAA-ATCTAGACAAG-CCTTCTCTAAATTTCCTCCCTGAAAATATAGGATAAAAA
833 TTTTGTACC-TAAGATCTAGACAAGTCC--CTCTAAATTTCCTCCCTGAAAATATAGGATAAAAA
*
69385026 TCAAGTAACACACTTGATTTTACACTTAGTGCAATCTAAATAAACATTCATCACTAAACAGAAAT
895 TCAAGTAACACACTTGATTTTACACTTAGTGCAATCTAAATAAACATTCCTCACTAAACAGAAAT
*
69385091 AAGTGCTCTCAAATCAGTATATAACCT
960 AAGTGCTCTCAAATAAGTATATAACCT
* * * *
69385118 ATACAAGTCTTCTCAATTTATAATAAAATTAGACTTGCTAACATACTAGATCAGTGACAATCAAT
1 ATACAAGTCTTCTCAATTTATAATGAAATGAGACTTGCTAACATACTAGATAAATGACAATCAAT
* * * * * *
69385183 CTTCCAACTAAAACAATAAAATAATCAGCTCTAAGAATAATGGATTCGGATTCTTTCTAGTTTAA
66 CTTCCAACTAAAACAACAAGATAATCAGCTCTAACAATAATGGATTCGGATTCTTTTTAATTTTA
* * * *
69385248 AATTTTTATTTACTTTTAATTATAAAAATGACTCTAAATATCATTTTAATATTTTTTGAAGTTAC
131 AATTTTTATTTACTTTTAATTATAAAAATCATTCTAAAAATAATTTTAATATTTTTTGAAGTTAC
* *
69385313 AACTATAATTAATATA-CTTATATAACAATAATCACAATTAATTAGTGTAATACATAAACAAAAT
196 AATTATAATTAATATATC-TATATAACAATAATCACAATTAATTAGTGCAATACATAAACAAAAT
*
69385377 CACAAATATAATCAATACATCCGTACAATTATGACTAGAATCAACCAAAGCAATTTAATGCACAA
260 CACAAATATAATCAATACATCCGTACAATTATGACTAGAATCAACCAATGCAATTTAATGCACAA
* * *
69385442 ACAAACATATTAATAAT-AACGCATAT-GTTTTG-A-T-TTAAATAAATAAATAAATAAATAACT
325 ACAGACATATTAATAATCAACGAATATAGTTTAGAACTGTTAAAT--ATAAATAAA-AAA-AACT
* * * *
69385502 ACGTATTGAAAACCCACAAATAATATTTATGCATGGTGGCAGTTGACCTGGAATCACAAAGTTTC
386 ACGTATTGAAAACCCACAAATGATATTTATGCATGGTGGGAGTCGACCTGGTATCACAAAGTTTC
* *
69385567 TACTTTGCCATCAAACCAAAACCACATTGACAAAAGAATTTTAATATTAAAATAAACATTAAAGG
451 TACTTTGCCATCAAACCAAGACCACATTGACAAAAGAATTTTAATATTAAAATAAACATCAAAGG
* *
69385632 TTAAGCGACTTAGACATAAGCAAGAAATTCTTTTATTATCTAAATTTGTTTCAATACAATCGTGG
516 TTAAGCGACTTAGACATAAGCAAGAAATTCTTTCATTATCTAAATTTGTTTCAATACAATCGTTG
* * * *
69385697 ACTAATTTTACTAGTAAAATATAATTTAAATATTATATATTATATTTTGAAAGTCCTACAATAAT
581 AATAATTCTACTAGTAAAATATAATTTAAATATTATATATTATATTTTGAAAGTTCTA-AATGAT
* * * *
69385762 ACTTGCAAGCAAATTGAGTAGTATCAACTATTTTCGGCACTAATGAAGAATAATAAAGAGCATAA
645 ACTTGCAAGCAAATTGAGTAGTACCAACTATTTTCGACACTGATGAAGAATAATAAAGA-CACAA
* * * * * **
69385827 CAATACGTTTGTGTATTTTAGTTTGCATACATCAACGAGGCCTTTGTAATGAGATAATCCATCGT
709 CAATATGTTTGCGTAGTTTAGTTT-CATACATCAGCGAGGCCTTAGTAATGAGATAATCCATTAT
* * * * *
69385892 CTTAGCACTTTGTACAAAAAATAGTTACAAATACAAACTTTCATAAAAATAGGATTTCACTTTTG
773 CTTAGCACTTTGTACAACAAGTAGTTACAAACACTAACTCTCATAAAAATAGGATTTCACTTTTG
** * * *
69385957 TACCTAAGATGAAGACAAGTACCCTCTAAATTTCATCACTAAAAATATAGGATAAAAATCAAGTA
838 TACCTAAGATCTAGACAAGT-CCCTCTAAATTTCCTCCCTGAAAATATAGGATAAAAATCAAGTA
* * * *
69386022 ACACACTAGATTTTACACTAAGTGCAGAT-TAAATAAACATTCCTCAATAAACAGAAATAAGTGT
902 ACACACTTGATTTTACACTTAGTGCA-ATCTAAATAAACATTCCTCACTAAACAGAAATAAGTGC
* *
69386086 TCTCAAATAAGTACATAACTT
966 TCTCAAATAAGTATATAACCT
69386107 ATACAAGTCTTCTCAATTTATAATGAAATGAGACTTGCTAACATACTAGATAAATGACAATCAAT
1 ATACAAGTCTTCTCAATTTATAATGAAATGAGACTTGCTAACATACTAGATAAATGACAATCAAT
* * **
69386172 CTTCCAACTAAAACAACAAGATAATCAGCTCTAAGAATAATGGATTTGGATTCTTTTTTGTTTTA
66 CTTCCAACTAAAACAACAAGATAATCAGCTCTAACAATAATGGATTCGGATTCTTTTTAATTTTA
69386237 AATTTTTATTTACTTTTAATTATAAAAATCATTCTAAAAATAATTTTAATATTTTTTGAAGTTAC
131 AATTTTTATTTACTTTTAATTATAAAAATCATTCTAAAAATAATTTTAATATTTTTTGAAGTTAC
*
69386302 AATTATAATTAATATATCTATATAACAATAATCACAATAAATTAGTGCAATACATAAACAAAATC
196 AATTATAATTAATATATCTATATAACAATAATCACAATTAATTAGTGCAATACATAAACAAAATC
* * *
69386367 A-AAAGT-TCAATCAAAACATCCGTACAATTATGGCTAGAATCAACCAATGGAATTTAATGCACA
261 ACAAA-TAT-AATCAATACATCCGTACAATTATGACTAGAATCAACCAATGCAATTTAATGCACA
* * *
69386430 AACAGACATATTAATAATCAACGAATATACAGATATAGAACACACGTGTTGAGATGTAAATAAAA
324 AACAGACATATTAATAATCAACGAATAT--AG-TTTAG---A-AC-TGTT-AAATATAAATAAAA
* * * *
69386495 AAAATTACGTATTAAAAACCCACAAATGATATTTATGCATGGTGGGAGTCGACCAGTTATCACAA
380 AAAACTACGTATTGAAAACCCACAAATGATATTTATGCATGGTGGGAGTCGACCTGGTATCACAA
* * *
69386560 AGTTTCTATTTTACCATCTAACCAAGA-C-CATTGACAAAAGAATTTTAATATTAAAATAAACAT
445 AGTTTCTACTTTGCCATCAAACCAAGACCACATTGACAAAAGAATTTTAATATTAAAATAAACAT
* * * * *
69386623 CAAAGGTTAAGCTACTTAGACATAACCAAGAAATTCTTCCATTACCTAAATTTGTTTCACTACAA
510 CAAAGGTTAAGCGACTTAGACATAAGCAAGAAATTCTTTCATTATCTAAATTTGTTTCAATACAA
* * *
69386688 TCGTTGAATAATTCTACTGGTAAAATTTAATTTAAATATTATATATTATATTTTGGAAGTTCTAA
575 TCGTTGAATAATTCTACTAGTAAAATATAATTTAAATATTATATATTATATTTTGAAAGTTCTAA
* * * * * *
69386753 ACCGGTAGTCGCAAGCAAATTGAGTAGTGCCAACTATTTTCGACAATGATGAAGAATAA-AAA-A
640 A-TGATACTTGCAAGCAAATTGAGTAGTACCAACTATTTTCGACACTGATGAAGAATAATAAAGA
* * * * * *
69386816 CACAACAATATGTTTGCGCAGTTCAGTTTCATACATTAGCGAGGTCTTAGCAGTGAGATAATCCA
704 CACAACAATATGTTTGCGTAGTTTAGTTTCATACATCAGCGAGGCCTTAGTAATGAGATAATCCA
* * **
69386881 TTATCTTAGCACTTTATATAACAAGTAGTTACAAACACTAACTCTCACGAAAATAGGA--TCACT
769 TTATCTTAGCACTTTGTACAACAAGTAGTTACAAACACTAACTCTCATAAAAATAGGATTTCACT
* * *
69386944 TTTGTACCTGAGATCTAGACAAATCTCCTCTAAATTTCCTCCCTGAAAATATAGGATAAAAACCA
834 TTTGTACCTAAGATCTAGACAAGTC-CCTCTAAATTTCCTCCCTGAAAATATAGGATAAAAATCA
* * * * *
69387009 AGTAACATACTTGATTCTACACTTAGTG-AACTCTAAATAAACTTTCCTCACTAAATAAAAATAA
898 AGTAACACACTTGATTTTACACTTAGTGCAA-TCTAAATAAACATTCCTCACTAAACAGAAATAA
*
69387073 GTGCTCTCAAATTAGTATATAACCT
962 GTGCTCTCAAATAAGTATATAACCT
* * * * *
69387098 ATACAAGTATTTTCAATTTATAATGAAATAAGACTTGTTAACATACTAGATCAATGACAATCAAT
1 ATACAAGTCTTCTCAATTTATAATGAAATGAGACTTGCTAACATACTAGATAAATGACAATCAAT
* *
69387163 CTTCCAACTAAAACAACAAG---ATCAGCTCTAACAATAATGGGATTCGGAATCTTTTTTATTTT
66 CTTCCAACTAAAACAACAAGATAATCAGCTCTAACAATAAT-GGATTCGGATTCTTTTTAATTTT
69387225 AAATTTTTATTTACTTTTAAT
130 AAATTTTTATTTACTTTTAAT
69387246 CTGAACACAG
Statistics
Matches: 1865, Mismatches: 224, Indels: 83
0.86 0.10 0.04
Matches are distributed among these distances:
984 2 0.00
985 4 0.00
986 9 0.00
987 3 0.00
988 197 0.11
989 708 0.38
990 14 0.01
991 214 0.11
993 79 0.04
994 96 0.05
995 37 0.02
996 58 0.03
997 211 0.11
998 137 0.07
999 79 0.04
1000 3 0.00
1001 9 0.00
1002 2 0.00
1003 3 0.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.32
Consensus pattern (986 bp):
ATACAAGTCTTCTCAATTTATAATGAAATGAGACTTGCTAACATACTAGATAAATGACAATCAAT
CTTCCAACTAAAACAACAAGATAATCAGCTCTAACAATAATGGATTCGGATTCTTTTTAATTTTA
AATTTTTATTTACTTTTAATTATAAAAATCATTCTAAAAATAATTTTAATATTTTTTGAAGTTAC
AATTATAATTAATATATCTATATAACAATAATCACAATTAATTAGTGCAATACATAAACAAAATC
ACAAATATAATCAATACATCCGTACAATTATGACTAGAATCAACCAATGCAATTTAATGCACAAA
CAGACATATTAATAATCAACGAATATAGTTTAGAACTGTTAAATATAAATAAAAAAAACTACGTA
TTGAAAACCCACAAATGATATTTATGCATGGTGGGAGTCGACCTGGTATCACAAAGTTTCTACTT
TGCCATCAAACCAAGACCACATTGACAAAAGAATTTTAATATTAAAATAAACATCAAAGGTTAAG
CGACTTAGACATAAGCAAGAAATTCTTTCATTATCTAAATTTGTTTCAATACAATCGTTGAATAA
TTCTACTAGTAAAATATAATTTAAATATTATATATTATATTTTGAAAGTTCTAAATGATACTTGC
AAGCAAATTGAGTAGTACCAACTATTTTCGACACTGATGAAGAATAATAAAGACACAACAATATG
TTTGCGTAGTTTAGTTTCATACATCAGCGAGGCCTTAGTAATGAGATAATCCATTATCTTAGCAC
TTTGTACAACAAGTAGTTACAAACACTAACTCTCATAAAAATAGGATTTCACTTTTGTACCTAAG
ATCTAGACAAGTCCCTCTAAATTTCCTCCCTGAAAATATAGGATAAAAATCAAGTAACACACTTG
ATTTTACACTTAGTGCAATCTAAATAAACATTCCTCACTAAACAGAAATAAGTGCTCTCAAATAA
GTATATAACCT
Found at i:69398480 original size:24 final size:24
Alignment explanation
Indices: 69398448--69398498 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
69398438 CCACCATCTG
69398448 AAAGGATTACAGATTTGGCTACTC
1 AAAGGATTACAGATTTGGCTACTC
69398472 AAAGGATTACAGATTTGGCTACTC
1 AAAGGATTACAGATTTGGCTACTC
69398496 AAA
1 AAA
69398499 TCCACTATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (24 bp):
AAAGGATTACAGATTTGGCTACTC
Found at i:69408943 original size:39 final size:39
Alignment explanation
Indices: 69408885--69408962 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
69408875 CCTAAACCAA
* * * *
69408885 AATCCACAAGAAAGCATCCTTCGAGTTTCAAGCC-AACCT
1 AATCCAAAAGAAAGAATCCTTCAAGCTTCAA-CCTAACCT
69408924 AATCCAAAAGAAAGAATCCTTCAAGCTTCAACCTAACCT
1 AATCCAAAAGAAAGAATCCTTCAAGCTTCAACCTAACCT
69408963 TGAATCACTG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.06
39 32 0.94
ACGTcount: A:0.40, C:0.29, G:0.10, T:0.21
Consensus pattern (39 bp):
AATCCAAAAGAAAGAATCCTTCAAGCTTCAACCTAACCT
Found at i:69411214 original size:21 final size:21
Alignment explanation
Indices: 69411173--69411214 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
69411163 TTTTCTCGAA
* *
69411173 TCGAGTCGAATGAGATGAAAT
1 TCGAATCGAATGAGATCAAAT
69411194 TCGAATCGAATCGA-ATCAAAT
1 TCGAATCGAAT-GAGATCAAAT
69411215 ATATTTGTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.24
Consensus pattern (21 bp):
TCGAATCGAATGAGATCAAAT
Found at i:69415839 original size:10 final size:11
Alignment explanation
Indices: 69415822--69415852 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
69415812 AATATTTTTG
69415822 TAATAATAAAA
1 TAATAATAAAA
69415833 TAA-AATAAAA
1 TAATAATAAAA
69415843 TAATAATAAA
1 TAATAATAAA
69415853 GAATTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:69418811 original size:11 final size:11
Alignment explanation
Indices: 69418795--69418819 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
69418785 TTGTATGTTC
69418795 TTTATTTTATT
1 TTTATTTTATT
69418806 TTTATTTTATT
1 TTTATTTTATT
69418817 TTT
1 TTT
69418820 TTAAGCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:69427329 original size:33 final size:33
Alignment explanation
Indices: 69427284--69427349 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
69427274 TATCCAAAAA
*
69427284 GAGTAAATTAGCACTTAGAACTTCAACAGCTAC
1 GAGTAAAGTAGCACTTAGAACTTCAACAGCTAC
*
69427317 GAGTAAAGTAGCACTTAGAACTTCTACAGCTAC
1 GAGTAAAGTAGCACTTAGAACTTCAACAGCTAC
69427350 TTGGACTCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (33 bp):
GAGTAAAGTAGCACTTAGAACTTCAACAGCTAC
Found at i:69436644 original size:21 final size:20
Alignment explanation
Indices: 69436606--69436644 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
69436596 ACATATACGA
*
69436606 AAACAACTTAAAACACTAGT
1 AAACAACTTAAAAAACTAGT
*
69436626 AAACCACTTGAAAAAACTA
1 AAACAACTT-AAAAAACTA
69436645 AAACACCCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.56, C:0.21, G:0.05, T:0.18
Consensus pattern (20 bp):
AAACAACTTAAAAAACTAGT
Found at i:69438410 original size:20 final size:20
Alignment explanation
Indices: 69438385--69438422 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
69438375 AAATTTTATT
69438385 TTATTTTTATATTTTGAAAA
1 TTATTTTTATATTTTGAAAA
*
69438405 TTATTTTTATTTTTTGAA
1 TTATTTTTATATTTTGAA
69438423 TTTTAAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (20 bp):
TTATTTTTATATTTTGAAAA
Done.