Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 247 of 292
Found at i:71894019 original size:43 final size:43
Alignment explanation
Indices: 71893958--71894070 Score: 172
Period size: 43 Copynumber: 2.6 Consensus size: 43
71893948 AAAAAACACT
* * *
71893958 GCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCC
1 GCTAAAAGTCATGGCTTTTAGCGGCATTTATGAGAAAAGCGCC
71894001 GCTAAAAGTCATGGCTTTTAGCGGCATTTATGAGAAAAGCGCC
1 GCTAAAAGTCATGGCTTTTAGCGGCATTTATGAGAAAAGCGCC
* *
71894044 GCTAAAAGTCACGTCTTTTTAGCGGCA
1 GCTAAAAGTCATGGC-TTTTAGCGGCA
71894071 CTTTTCCCAC
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
43 53 0.83
44 11 0.17
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (43 bp):
GCTAAAAGTCATGGCTTTTAGCGGCATTTATGAGAAAAGCGCC
Found at i:71900143 original size:9 final size:9
Alignment explanation
Indices: 71900087--71900190 Score: 100
Period size: 9 Copynumber: 11.2 Consensus size: 9
71900077 TTATGAAGTT
*
71900087 GTTATGTAC
1 GTTATGTAA
*
71900096 GTTATGTGA
1 GTTATGTAA
71900105 GTTATGTAA
1 GTTATGTAA
*
71900114 ATTATGTAA
1 GTTATGTAA
*
71900123 GTTATGTGA
1 GTTATGTAA
71900132 GTTATGTAA
1 GTTATGTAA
71900141 GTTGTTATGTAA
1 ---GTTATGTAA
*
71900153 ATTATGTAA
1 GTTATGTAA
* *
71900162 GTTATATGA
1 GTTATGTAA
71900171 GTTATGTAA
1 GTTATGTAA
* *
71900180 TTTATTTAA
1 GTTATGTAA
71900189 GT
1 GT
71900191 AATGATCAAT
Statistics
Matches: 76, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
9 67 0.88
12 9 0.12
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
GTTATGTAA
Found at i:71900148 original size:39 final size:39
Alignment explanation
Indices: 71900105--71900179 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
71900095 CGTTATGTGA
*
71900105 GTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
1 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
71900144 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAA
1 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAA
71900180 TTTATTTAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.45
Consensus pattern (39 bp):
GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
Found at i:71900732 original size:241 final size:241
Alignment explanation
Indices: 71900309--71900775 Score: 880
Period size: 241 Copynumber: 1.9 Consensus size: 241
71900299 TGAATATAGT
71900309 AATTTTTTAAGATTCATCATACGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
*
71900374 TCGATATAAGGCAACCCGTCAGGTTTTCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
*
71900439 AGGTTAGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
131 AGGTTAGAGAGAAGGTCAGCTATTGTTGTAATTTTAATAGACAAGCAAGCTACATGGTAATAAAT
71900504 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
71900550 AATTTTTTAAGATTCATCATACGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
71900615 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
* *
71900680 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATAGATAAGCAAGCTACATGGTAATAAAT
131 AGGTTAGAGAGAAGGTCAGCTATTGTTGTAATTTTAATAGACAAGCAAGCTACATGGTAATAAAT
* *
71900745 ATTTAATAGTAAATGAGCTCGATGGAACTTT
196 ATTCAATAGTAAATGAGCTCGATAGAACTTT
71900776 AACTATTTTA
Statistics
Matches: 220, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
241 220 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (241 bp):
AATTTTTTAAGATTCATCATACGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
AGGTTAGAGAGAAGGTCAGCTATTGTTGTAATTTTAATAGACAAGCAAGCTACATGGTAATAAAT
ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:71904970 original size:14 final size:14
Alignment explanation
Indices: 71904935--71904971 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
71904925 TATTATCTCT
71904935 TAAATAATTTAATC
1 TAAATAATTTAATC
71904949 TAAA-AATTTAATC
1 TAAATAATTTAATC
71904962 TAAATAATTT
1 TAAATAATTT
71904972 CATTTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (14 bp):
TAAATAATTTAATC
Found at i:71905417 original size:21 final size:21
Alignment explanation
Indices: 71905374--71905419 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
71905364 CTTAAAACCC
* **
71905374 TAAACCATATACCCTAATTTA
1 TAAACCATAAACCCTAAACTA
71905395 TAAACCATAAACCCTAAACTA
1 TAAACCATAAACCCTAAACTA
71905416 TAAA
1 TAAA
71905420 GATAATTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (21 bp):
TAAACCATAAACCCTAAACTA
Found at i:71905550 original size:21 final size:21
Alignment explanation
Indices: 71905525--71905574 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
71905515 AACCGTAAAC
*
71905525 CCATAATCCCT-AATCCATAAT
1 CCATAAACCCTGAAT-CATAAT
*
71905546 CCATAAACCCTGAATCATAAA
1 CCATAAACCCTGAATCATAAT
*
71905567 ACATAAAC
1 CCATAAAC
71905575 TCTAAACCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 22 0.88
22 3 0.12
ACGTcount: A:0.46, C:0.30, G:0.02, T:0.22
Consensus pattern (21 bp):
CCATAAACCCTGAATCATAAT
Found at i:71905629 original size:16 final size:16
Alignment explanation
Indices: 71905604--71905634 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71905594 ACACTTAAAT
71905604 CATAACCCTTAAACCC
1 CATAACCCTTAAACCC
*
71905620 CATAATCCTTAAACC
1 CATAACCCTTAAACC
71905635 TTAAAATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.23
Consensus pattern (16 bp):
CATAACCCTTAAACCC
Found at i:71905682 original size:21 final size:22
Alignment explanation
Indices: 71905644--71905684 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
71905634 CTTAAAATAA
*
71905644 TAACTCATAAACCTTAAACCCT
1 TAACTCATAAACCCTAAACCCT
*
71905666 TAAC-CATATACCCTAAACC
1 TAACTCATAAACCCTAAACC
71905685 GTAAAGTACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.24
Consensus pattern (22 bp):
TAACTCATAAACCCTAAACCCT
Found at i:71906830 original size:46 final size:46
Alignment explanation
Indices: 71906793--71907133 Score: 506
Period size: 46 Copynumber: 7.4 Consensus size: 46
71906783 ATAAAATGTG
* * **
71906793 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAA
* *
71906839 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAA
* **
71906885 TAAGACCATGGTTGAAAGATACCATAGCAACATGACGGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAA
* * *
71906931 TAAGACCATGGTTGAAAGATACCATGGCAGCGTAACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAA
*
71906977 TAAGACCATGGTTGAAAGATACCATGGCAACATGATA-GAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAA
*
71907023 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAA
*
71907069 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAA
*
71907115 TAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGA
71907134 CACTATGACA
Statistics
Matches: 269, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
45 2 0.01
46 266 0.99
47 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAA
Found at i:71907450 original size:16 final size:17
Alignment explanation
Indices: 71907429--71907461 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
71907419 ATGATGGTGC
*
71907429 ATGAAAT-ATTGATATA
1 ATGAAATGATTAATATA
71907445 ATGAAATGATTAATATA
1 ATGAAATGATTAATATA
71907462 TACTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTAATATA
Found at i:71923249 original size:2 final size:2
Alignment explanation
Indices: 71923242--71923267 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
71923232 TTGTACTCTT
71923242 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
71923268 AATTTTAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:71927707 original size:2 final size:2
Alignment explanation
Indices: 71927700--71927729 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
71927690 TTTACAATTA
*
71927700 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71927730 TAGAAAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:71928937 original size:21 final size:21
Alignment explanation
Indices: 71928899--71928947 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
71928889 AAGCAGCAGC
*
71928899 AAGGAGAAGAAGAGAAAAAAA
1 AAGGAGAAGAAGAAAAAAAAA
71928920 AAGGAGAAG--GAAAAAAAAGA
1 AAGGAGAAGAAGAAAAAAAA-A
*
71928940 AAAGAGAA
1 AAGGAGAA
71928948 TGTATAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 8 0.32
20 8 0.32
21 9 0.36
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (21 bp):
AAGGAGAAGAAGAAAAAAAAA
Found at i:71929074 original size:26 final size:26
Alignment explanation
Indices: 71929041--71929095 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
71929031 TTGTTGTTAG
*
71929041 TTATTATTGTTAGTAAAAAACTCTTA
1 TTATTATTGTTAGTAAAAAACTATTA
71929067 TTATTATTGTTAGTAAAAAACTATTA
1 TTATTATTGTTAGTAAAAAACTATTA
71929093 TTA
1 TTA
71929096 GGATTGTTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.47
Consensus pattern (26 bp):
TTATTATTGTTAGTAAAAAACTATTA
Found at i:71929101 original size:26 final size:26
Alignment explanation
Indices: 71929046--71929103 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
71929036 GTTAGTTATT
* **
71929046 ATTGTTAGTAAAAAACTCTTATTATT
1 ATTGTTAGTAAAAAACTATTATTAGG
71929072 ATTGTTAGTAAAAAACTATTATTAGG
1 ATTGTTAGTAAAAAACTATTATTAGG
71929098 ATTGTT
1 ATTGTT
71929104 GGTTATTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (26 bp):
ATTGTTAGTAAAAAACTATTATTAGG
Found at i:71929138 original size:36 final size:37
Alignment explanation
Indices: 71929067--71929149 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 37
71929057 AAAACTCTTA
* * *
71929067 TTATTATTGTTAGTAAAAAACTATTATTAGGATTGTTGG
1 TTATTATTGTTAGTAAAAAACCATAATT--GATTGTTAG
71929106 TTATTATTGTTAGTAAAAAACCCA-AATT-ATTGTTAG
1 TTATTATTGTTAGTAAAAAA-CCATAATTGATTGTTAG
71929142 TTATTATT
1 TTATTATT
71929150 ATTGTTGATT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
36 15 0.38
39 23 0.57
40 2 0.05
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (37 bp):
TTATTATTGTTAGTAAAAAACCATAATTGATTGTTAG
Found at i:71932889 original size:18 final size:17
Alignment explanation
Indices: 71932857--71932904 Score: 69
Period size: 18 Copynumber: 2.8 Consensus size: 17
71932847 TTGCATATAT
71932857 TTAATGTTCTAATTAGA
1 TTAATGTTCTAATTAGA
*
71932874 TTAATGTATTTAATTAGA
1 TTAATGT-TCTAATTAGA
*
71932892 TTAATGTTGTAAT
1 TTAATGTTCTAAT
71932905 GTATTTAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 12 0.43
18 16 0.57
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.50
Consensus pattern (17 bp):
TTAATGTTCTAATTAGA
Found at i:71933454 original size:18 final size:18
Alignment explanation
Indices: 71933409--71933456 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
71933399 TTCAACTGTG
* * *
71933409 GCTCAGGCTCGGGCTCTG
1 GCTCTGGCTCGGGATCTA
*
71933427 GCTCTTGCTCGGGATCTA
1 GCTCTGGCTCGGGATCTA
*
71933445 GCTGTGGCTCGG
1 GCTCTGGCTCGG
71933457 ACTCTATATC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.06, C:0.29, G:0.38, T:0.27
Consensus pattern (18 bp):
GCTCTGGCTCGGGATCTA
Found at i:71938775 original size:150 final size:148
Alignment explanation
Indices: 71938481--71938995 Score: 694
Period size: 148 Copynumber: 3.5 Consensus size: 148
71938471 TTTTGTTCGG
*
71938481 TGATTTTGGCCCTTTGTT-GATTTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTT--
1 TGATTTTGGCACTTTGTTGGATTTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTCG
* * *
71938543 CA-TAT-TTTTTGTATTATTTTAGTATATAATCTTGT--AATGTATTATTTAA--GTTTTTTATA
66 CATTTTATTTTTATATTATTTTAGTATATAATGTT-TCAAATGTATTATTTAAGTGTTTTTTATA
71938602 TTAATTTAATAAATAACCC
130 TTAATTTAATAAATAACCC
* * * *
71938621 TGATTTTAGCACTTTGTTGGTATTTTTTTATTTTCGAATTTTATTTTTAAAAATATATTATTTTT
1 TGATTTTGGCACTTTGTTGG-ATTTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTC
*
71938686 GCATTTTATTTTTATATTATTTTAGTATATAATGTTTCAAATGTATTATTAAAGTGTTTTATTAT
65 GCATTTTATTTTTATATTATTTTAGTATATAATGTTTCAAATGTATTATTTAAGTGTTTT-TTAT
*
71938751 ATTAATTTAATAAATAACCT
129 ATTAATTTAATAAATAACCC
* *
71938771 TGATTTTGACACTTTGTTGG-TATTTTTTATTTTTGGATTTTATTTTTTAAAATATATTATTTTC
1 TGATTTTGGCACTTTGTTGGAT-TTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTC
** * * *
71938835 ATATTTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTA
65 GCA-TTTTA-TTTTTATATTATTTTAGTATATAATGTTTCAAATGTATTATTTAAGTGTTTTTTA
*
71938900 -A-TAATTTAGTAAATAACCC
128 TATTAATTTAATAAATAACCC
* * *
71938919 TGATTTTGGCACTTTATTGGATTTTTTTACTTTCGGATTTTATTTTTTAAAATATACTATTTTCG
1 TGATTTTGGCACTTTGTTGGATTTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTCG
*
71938984 TATTTTATTTTT
66 CATTTTATTTTT
71938996 GTAACACCCC
Statistics
Matches: 331, Mismatches: 29, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
140 16 0.05
141 1 0.00
142 41 0.12
144 2 0.01
145 3 0.01
146 31 0.09
147 18 0.05
148 76 0.23
149 46 0.14
150 49 0.15
151 48 0.15
ACGTcount: A:0.28, C:0.06, G:0.09, T:0.58
Consensus pattern (148 bp):
TGATTTTGGCACTTTGTTGGATTTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTCG
CATTTTATTTTTATATTATTTTAGTATATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATAT
TAATTTAATAAATAACCC
Found at i:71939845 original size:43 final size:44
Alignment explanation
Indices: 71939782--71939910 Score: 129
Period size: 46 Copynumber: 2.9 Consensus size: 44
71939772 CTTTTATTCA
* * *
71939782 TTCACCGACATT-TCGCCTGCTAGGCCCG-AGGCCCGATATCAT-
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGGCCCGA-ATAATG
*
71939824 TTCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAATG
1 TTCACCGGCATTATAGCCTGCTAGGCCCG-AAGGCCCGAATAATG
* * * * *
71939869 TCTCACCGGCATAATAGTCAGCTAGGCTCAAAGGCCCGAATA
1 T-TCACCGGCATTATAGCCTGCTAGGCCCGAAGGCCCGAATA
71939911 TAATACCAGC
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
42 11 0.15
43 14 0.19
44 4 0.05
45 21 0.28
46 24 0.32
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (44 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGGCCCGAATAATG
Found at i:71939959 original size:38 final size:38
Alignment explanation
Indices: 71939903--71940025 Score: 183
Period size: 38 Copynumber: 3.2 Consensus size: 38
71939893 GGCTCAAAGG
* *
71939903 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
71939941 CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
71939979 CCCCAATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
71940017 CCCGGATAT
1 CCCGAATAT
71940026 CATATTTCGA
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 75 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:71942777 original size:14 final size:15
Alignment explanation
Indices: 71942754--71942782 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
71942744 TTGTTTGCAT
71942754 TTTTTAAATTTTTAA
1 TTTTTAAATTTTTAA
71942769 TTTTT-AATTTTTAA
1 TTTTTAAATTTTTAA
71942783 AATATACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTAAATTTTTAA
Found at i:71943323 original size:148 final size:149
Alignment explanation
Indices: 71942657--71943427 Score: 1276
Period size: 150 Copynumber: 5.2 Consensus size: 149
71942647 GCTGTCACAA
* * *
71942657 TTTTTATATTATTTTAGTACATAATATTTCAAATGTACTATTTTAGTTTTTTTTAATAATTTAGT
1 TTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAATAATTTAGT
* * ** *
71942722 AAATAACCCTGATTTTGGCCATTTGTTTGCATTTTTTAAATTTT-TAATTTTTAATTTTTAAAAT
66 AAATAACCCTGATTTTGGCCCTTTGTTTGTATTTTTTAAATTTTCGGA-TTTTATTTTTTAAAAT
*
71942786 ATACTATTTTCGTTTTTTATT
130 ATACTATTTTCGTATTTTA-T
* *
71942807 TTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTGTCTTATAATAATTTAG
1 TTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAG-TGTTTTTTAATAATTTAG
* *
71942872 TAAATAATCCTGATTTTGGCCCTTTGTTTGTAATTTTTAAATTTTCGGATTTTATTTTTTAAAAT
65 TAAATAACCCTGATTTTGGCCCTTTGTTTGTATTTTTTAAATTTTCGGATTTTATTTTTTAAAAT
71942937 ATACTATTTTCGTATTTTAT
130 ATACTATTTTCGTATTTTAT
71942957 TTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTTAATAATTTAG
1 TTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTG-TTTTTTAATAATTTAG
*
71943022 TAAATAACCCTGATTTTGGCCCTTTGTTTGCATTTTTTAAATTTTCGGATTTTATTTTTTAAAAT
65 TAAATAACCCTGATTTTGGCCCTTTGTTTGTATTTTTTAAATTTTCGGATTTTATTTTTTAAAAT
*
71943087 ATACTATTTTCATATTTTAT
130 ATACTATTTTCGTATTTTAT
*
71943107 TTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTAGTTTAGTGTTTTTTAATAATTTAGT
1 TTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAATAATTTAGT
*
71943172 AAATAACCCTGATTTTGGCCCTTTGTTTGTATTTTTTAAATTTTCAGATTTTATTTTTTAAAATA
66 AAATAACCCTGATTTTGGCCCTTTGTTTGTATTTTTTAAATTTTCGGATTTTATTTTTTAAAATA
71943237 TACTATTTTCGTATTTTA-
131 TACTATTTTCGTATTTTAT
* * *
71943255 TTTTTACATTATTTTAGTACATAATATTTTAAATGTATTATTTTAGTGTTTTTTAATAATTTAGT
1 TTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAATAATTTAGT
* * *
71943320 AAATAACCCTGATTTTGGCCATTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATA
66 AAATAACCCTGATTTTGGCCCTTTGTTTGTATTTTTTAAATTTTCGGATTTTATTTTTTAAAATA
71943385 TACTATTTTCGTATTTTAT
131 TACTATTTTCGTATTTTAT
*
71943404 TTTTTATATTATTTTAGTAAATAA
1 TTTTTATATTATTTTAGTACATAA
71943428 CTCACCAGCA
Statistics
Matches: 584, Mismatches: 33, Indels: 9
0.93 0.05 0.01
Matches are distributed among these distances:
148 140 0.24
149 121 0.21
150 233 0.40
151 89 0.15
152 1 0.00
ACGTcount: A:0.28, C:0.07, G:0.08, T:0.56
Consensus pattern (149 bp):
TTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAATAATTTAGT
AAATAACCCTGATTTTGGCCCTTTGTTTGTATTTTTTAAATTTTCGGATTTTATTTTTTAAAATA
TACTATTTTCGTATTTTAT
Found at i:71943476 original size:17 final size:17
Alignment explanation
Indices: 71943451--71943488 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
71943441 CTTTCCCCAA
*
71943451 ATTTTTTTTCGTATTTT
1 ATTTCTTTTCGTATTTT
71943468 ATTTCTTTTCGTATTTT
1 ATTTCTTTTCGTATTTT
71943485 ATTT
1 ATTT
71943489 TTTCATTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.13, C:0.08, G:0.05, T:0.74
Consensus pattern (17 bp):
ATTTCTTTTCGTATTTT
Found at i:71944030 original size:3 final size:3
Alignment explanation
Indices: 71944016--71944057 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
71944006 GTGCCGCCTC
* *
71944016 CTT CTC CTT CTT CTT CTT C-T CTT CTT CTC CTT CTT -TT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
71944058 CGAAATGAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 4 0.12
3 29 0.88
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
CTT
Found at i:71944041 original size:14 final size:14
Alignment explanation
Indices: 71944013--71944058 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
71944003 CCAGTGCCGC
71944013 CTCCTTCTCCTTCTT
1 CTCCTTCT-CTTCTT
*
71944028 CTTCTTCTCTTCTT
1 CTCCTTCTCTTCTT
*
71944042 CTCCTTCTTTTCTT
1 CTCCTTCTCTTCTT
71944056 CTC
1 CTC
71944059 GAAATGAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
14 21 0.75
15 7 0.25
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (14 bp):
CTCCTTCTCTTCTT
Found at i:71944048 original size:17 final size:17
Alignment explanation
Indices: 71944022--71944057 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
71944012 CCTCCTTCTC
*
71944022 CTTCTTCTTCTTCTCTT
1 CTTCTCCTTCTTCTCTT
*
71944039 CTTCTCCTTCTTTTCTT
1 CTTCTCCTTCTTCTCTT
71944056 CT
1 CT
71944058 CGAAATGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (17 bp):
CTTCTCCTTCTTCTCTT
Found at i:71945343 original size:23 final size:23
Alignment explanation
Indices: 71945314--71945359 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
71945304 ATTATATTAA
* *
71945314 AATTAAAATTAAAATATAAATAT
1 AATTAAAAATAAAAAATAAATAT
*
71945337 AATTAAAAATAAAAAATATATAT
1 AATTAAAAATAAAAAATAAATAT
71945360 TTATTATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
AATTAAAAATAAAAAATAAATAT
Found at i:71946448 original size:17 final size:17
Alignment explanation
Indices: 71946423--71946456 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
71946413 TATTTCATCA
*
71946423 ATATATTATATCATTAT
1 ATATATTATATAATTAT
*
71946440 ATATTTTATATAATTAT
1 ATATATTATATAATTAT
71946457 TAAATTTAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
ATATATTATATAATTAT
Found at i:71949849 original size:27 final size:27
Alignment explanation
Indices: 71949802--71949865 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
71949792 TGCAATTTGG
*
71949802 ATTATAATAAAAAACAATATTTTAAAA
1 ATTATAATAAAAAACAATATTTAAAAA
**
71949829 ATTATAATCAAAAAA-TTTATTTAAAAAA
1 ATTATAAT-AAAAAACAATATTT-AAAAA
*
71949857 ATTAAAATA
1 ATTATAATA
71949866 GATCAAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
27 14 0.45
28 17 0.55
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (27 bp):
ATTATAATAAAAAACAATATTTAAAAA
Found at i:71955031 original size:11 final size:11
Alignment explanation
Indices: 71955015--71955041 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
71955005 AAAAAATTCG
71955015 TAATAAAATCA
1 TAATAAAATCA
71955026 TAATAAAATCA
1 TAATAAAATCA
71955037 TAATA
1 TAATA
71955042 TATGATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (11 bp):
TAATAAAATCA
Found at i:71956139 original size:2 final size:2
Alignment explanation
Indices: 71956132--71956157 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
71956122 AATCTAAGCC
71956132 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
71956158 TTTTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71958290 original size:42 final size:42
Alignment explanation
Indices: 71958229--71958366 Score: 141
Period size: 42 Copynumber: 3.3 Consensus size: 42
71958219 TTGATTTATT
* *
71958229 CAATGATGCACTTATGTGCCAGTATAATTGCTTCAGTATATC
1 CAATGATGCACTTACGTGCCAGTATAATTGCTTCAGTACATC
** * * * **
71958271 TGATGGTGCACTTACGTGCCAGTATATTTTCTTTGGTACATC
1 CAATGATGCACTTACGTGCCAGTATAATTGCTTCAGTACATC
* * * * **
71958313 CAATGATGCACTTACGTGTCAGCATGATTGCTTCGGTTTATC
1 CAATGATGCACTTACGTGCCAGTATAATTGCTTCAGTACATC
71958355 CAATGATGCACT
1 CAATGATGCACT
71958367 ATGTGTATCA
Statistics
Matches: 76, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
42 76 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (42 bp):
CAATGATGCACTTACGTGCCAGTATAATTGCTTCAGTACATC
Found at i:71958396 original size:43 final size:41
Alignment explanation
Indices: 71958310--71958410 Score: 98
Period size: 43 Copynumber: 2.4 Consensus size: 41
71958300 TCTTTGGTAC
* * **
71958310 ATCCAATGATGCACTTACGTGTCAGCATGATTGCTTCGGTTT
1 ATCCAATGATGCAC-TATGTGTCAGCATGATTCCTTCAATTT
71958352 ATCCAATGATGCACTATGTGTATCAGCAT-ATTTCCTTCAATTT
1 ATCCAATGATGCACTATGTG--TCAGCATGA-TTCCTTCAATTT
**
71958395 ATCTGATGA-GCACTAT
1 ATCCAATGATGCACTAT
71958411 AGTGCCACTT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
41 5 0.10
42 22 0.44
43 23 0.46
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.37
Consensus pattern (41 bp):
ATCCAATGATGCACTATGTGTCAGCATGATTCCTTCAATTT
Found at i:71981335 original size:29 final size:29
Alignment explanation
Indices: 71981293--71981353 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
71981283 AGTTTATAGC
71981293 ACTTTGACATAGAACTATAGCCAATAAAA
1 ACTTTGACATAGAACTATAGCCAATAAAA
71981322 ACTTTGACATAGAACTATAGCCAATAAAA
1 ACTTTGACATAGAACTATAGCCAATAAAA
71981351 ACT
1 ACT
71981354 AACTTCTCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.48, C:0.18, G:0.10, T:0.25
Consensus pattern (29 bp):
ACTTTGACATAGAACTATAGCCAATAAAA
Found at i:71987649 original size:13 final size:13
Alignment explanation
Indices: 71987633--71987666 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
71987623 AATAAAATAA
71987633 TAAAATATCTTAT
1 TAAAATATCTTAT
71987646 TAAAATATCTTAT
1 TAAAATATCTTAT
71987659 TAAAATAT
1 TAAAATAT
71987667 TAATAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (13 bp):
TAAAATATCTTAT
Found at i:71988850 original size:208 final size:208
Alignment explanation
Indices: 71988469--71988912 Score: 789
Period size: 208 Copynumber: 2.1 Consensus size: 208
71988459 GTCGTGTGAC
* * **
71988469 CCACACGGCTTAGACACATAGGCGTGTCACTAATCATGTGGATTTTGGGACTTAGGTTTTTATTT
1 CCACACTGCTTGGACACACGGGCGTGTCACTAATCATGTGGATTTTGGGACTTAGGTTTTTATTT
* * *
71988534 GTAAAGGAAATCGACAGAGAGTTACACGGCGAGGACACACGGGTGTGTCCTCGGCCGTGTGAGCC
66 GTAAAGGAAATCGACAGAGAGTTACACAGCCAGGACACACGGGCGTGTCCTCGGCCGTGTGAGCC
71988599 CTGAAGTTTAAATCCCCAAAAATCGACAAAGACACGAGCTAAAAGAGGCCACACGGGCGTGCAAC
131 CTGAAGTTTAAATCCCCAAAAATCGACAAAGACACGAGCTAAAAGAGGCCACACGGGCGTGCAAC
71988664 ACGGTCATGTGGA
196 ACGGTCATGTGGA
*
71988677 CCACACTGCTTGGACACACGGGCGTGTCACTAATCATGTGGATTTTGGGAGTTAGGTTTTTATTT
1 CCACACTGCTTGGACACACGGGCGTGTCACTAATCATGTGGATTTTGGGACTTAGGTTTTTATTT
*
71988742 GTAAAGGAAATCGACCGAGAGTTACACAGCCAGGACACACGGGCGTGTCCTCGGCCGTGTGAGCC
66 GTAAAGGAAATCGACAGAGAGTTACACAGCCAGGACACACGGGCGTGTCCTCGGCCGTGTGAGCC
* *
71988807 CTGAAGTTTAAATCCCCAAAAATCGACAAAGATACGGGCTAAAAGAGGCCACACGGGCGTGCAAC
131 CTGAAGTTTAAATCCCCAAAAATCGACAAAGACACGAGCTAAAAGAGGCCACACGGGCGTGCAAC
71988872 ACGGTCATGTGGA
196 ACGGTCATGTGGA
71988885 CCACACTGCTTGGACACACGGGCGTGTC
1 CCACACTGCTTGGACACACGGGCGTGTC
71988913 CTAGGCCGTA
Statistics
Matches: 225, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
208 225 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (208 bp):
CCACACTGCTTGGACACACGGGCGTGTCACTAATCATGTGGATTTTGGGACTTAGGTTTTTATTT
GTAAAGGAAATCGACAGAGAGTTACACAGCCAGGACACACGGGCGTGTCCTCGGCCGTGTGAGCC
CTGAAGTTTAAATCCCCAAAAATCGACAAAGACACGAGCTAAAAGAGGCCACACGGGCGTGCAAC
ACGGTCATGTGGA
Found at i:71989367 original size:28 final size:27
Alignment explanation
Indices: 71989323--71989377 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 27
71989313 CCGCAATCTA
71989323 CCCAAAATCATTTCCCACCAAAATTTT
1 CCCAAAATCATTTCCCACCAAAATTTT
71989350 CCCAAAATCCATTTCCCACCAAAATTTT
1 CCCAAAAT-CATTTCCCACCAAAATTTT
71989378 ACTCTCCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.36, C:0.35, G:0.00, T:0.29
Consensus pattern (27 bp):
CCCAAAATCATTTCCCACCAAAATTTT
Found at i:71989453 original size:19 final size:20
Alignment explanation
Indices: 71989423--71989463 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
71989413 CAAAAACCCT
*
71989423 CAAAACTTTTTATTTTCCCC
1 CAAAACTTTTTACTTTCCCC
*
71989443 CAAAA-TTTTTACTTTCTCC
1 CAAAACTTTTTACTTTCCCC
71989462 CA
1 CA
71989464 CTTTCCGCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.44
Consensus pattern (20 bp):
CAAAACTTTTTACTTTCCCC
Found at i:71993313 original size:14 final size:14
Alignment explanation
Indices: 71993292--71993337 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
71993282 TCATTACTCT
71993292 TTTATTATTA-TTA-
1 TTTATT-TTATTTAC
71993305 TTTA-TTTATTTAC
1 TTTATTTTATTTAC
*
71993318 TTTATTTTATTTAT
1 TTTATTTTATTTAC
71993332 TTTATT
1 TTTATT
71993338 ATAAGCCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
11 3 0.10
12 4 0.14
13 8 0.28
14 14 0.48
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATTTTATTTAC
Found at i:71993334 original size:9 final size:9
Alignment explanation
Indices: 71993292--71993337 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
71993282 TCATTACTCT
71993292 TTTATTATTA
1 TTTATT-TTA
71993302 -TTA-TTTA
1 TTTATTTTA
71993309 TTTA-TTTA
1 TTTATTTTA
71993317 CTTTATTTTA
1 -TTTATTTTA
71993327 TTTATTTTA
1 TTTATTTTA
71993336 TT
1 TT
71993338 ATAAGCCTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
7 3 0.09
8 8 0.24
9 18 0.55
10 4 0.12
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTATTTTA
Found at i:72005321 original size:22 final size:22
Alignment explanation
Indices: 72005296--72005350 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
72005286 ATTTAATCCT
72005296 TTTCTCCTCTTCAGTATTTGTG
1 TTTCTCCTCTTCAGTATTTGTG
72005318 TTTCTCCTCTTCAGTATTTGTG
1 TTTCTCCTCTTCAGTATTTGTG
72005340 TTTCTCCTCTT
1 TTTCTCCTCTT
72005351 ATCAGTTGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.07, C:0.25, G:0.11, T:0.56
Consensus pattern (22 bp):
TTTCTCCTCTTCAGTATTTGTG
Found at i:72009135 original size:54 final size:51
Alignment explanation
Indices: 72009017--72009135 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 51
72009007 AAGTGTCGCC
* * *
72009017 TTACTGTTACTGTTCCGGATTCGTTCCGAAGAGGTACTCCGTACCTTACTG
1 TTACTGTTACTGTTCCGAATTCGTTCCGAAGAGGTACTCCGTACCCTACTA
* * * *
72009068 TTACTGTTACTGTTCCGAATTTGTTCTGATGAGGTACTCTGTGTACCGCTACTA
1 TTACTGTTACTGTTCCGAATTCGTTCCGAAGAGGTACTC--CGTACC-CTACTA
72009122 TTACTGTTACTGTT
1 TTACTGTTACTGTT
72009136 ACCGTTACGA
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
51 35 0.60
53 5 0.09
54 18 0.31
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (51 bp):
TTACTGTTACTGTTCCGAATTCGTTCCGAAGAGGTACTCCGTACCCTACTA
Found at i:72009378 original size:18 final size:18
Alignment explanation
Indices: 72009251--72009378 Score: 168
Period size: 18 Copynumber: 7.1 Consensus size: 18
72009241 TAAATAAAGG
*
72009251 TACTGAATAACTGACTGC
1 TACTGAATAACTGACTGT
*
72009269 TACTGAATAACTGACTGC
1 TACTGAATAACTGACTGT
72009287 TACTGAATAACTGACTGT
1 TACTGAATAACTGACTGT
* *
72009305 TACTGGATAACTGACTGC
1 TACTGAATAACTGACTGT
*
72009323 TACTGAATAATTGACTGT
1 TACTGAATAACTGACTGT
* *
72009341 TACTGAATAATTTA-TCGT
1 TACTGAATAACTGACT-GT
*
72009359 TACTGAATAACTGATTGT
1 TACTGAATAACTGACTGT
72009377 TA
1 TA
72009379 AAGAGTACTA
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
17 1 0.01
18 97 0.98
19 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
Consensus pattern (18 bp):
TACTGAATAACTGACTGT
Found at i:72014379 original size:23 final size:24
Alignment explanation
Indices: 72014353--72014406 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
72014343 AATATATATT
72014353 TATTATTAAA-ATATTAATAT-AAA
1 TATTATTAAATATA-TAATATAAAA
* *
72014376 TATTCTTAAATATATAATTTAAAA
1 TATTATTAAATATATAATATAAAA
72014400 TATTATT
1 TATTATT
72014407 TGAAATTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 14 0.54
24 12 0.46
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
TATTATTAAATATATAATATAAAA
Found at i:72014437 original size:22 final size:19
Alignment explanation
Indices: 72014391--72014437 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 19
72014381 TTAAATATAT
*
72014391 AATTTAAAATATTATTTGA
1 AATTTAAAATATTATTTAA
72014410 AATTTAAAATCATTACTATTAA
1 AATTTAAAAT-ATTA-T-TTAA
72014432 AATTTA
1 AATTTA
72014438 TTATTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 10 0.42
20 4 0.17
21 1 0.04
22 9 0.38
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (19 bp):
AATTTAAAATATTATTTAA
Found at i:72014461 original size:19 final size:18
Alignment explanation
Indices: 72014429--72014468 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
72014419 TCATTACTAT
*
72014429 TAAAATTTATTATTAAAA
1 TAAAATTTAATATTAAAA
*
72014447 TAAAATTATAATATTTAAA
1 TAAAATT-TAATATTAAAA
72014466 TAA
1 TAA
72014469 TTTATTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:72014465 original size:33 final size:33
Alignment explanation
Indices: 72014428--72014535 Score: 87
Period size: 33 Copynumber: 3.1 Consensus size: 33
72014418 ATCATTACTA
72014428 TTAAAATTTATTATTAAAATAAAATTATAATAT
1 TTAAAATTTATTATTAAAATAAAATTATAATAT
*
72014461 TTAAATAATTTATTA--AAAATAATTAATTATATTA-
1 TT-AA-AATTTATTATTAAAATAA--AATTATAATAT
*
72014495 TTAAATATTTATTTTTAATAATATTAAACATTATAATAT
1 TTAAA-ATTTATTATT-A-AA-A-TAAA-ATTATAATAT
72014534 TT
1 TT
72014536 TATATATTTA
Statistics
Matches: 59, Mismatches: 3, Indels: 20
0.72 0.04 0.24
Matches are distributed among these distances:
32 1 0.02
33 18 0.31
34 4 0.07
35 18 0.31
36 1 0.02
37 3 0.05
38 9 0.15
39 5 0.08
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (33 bp):
TTAAAATTTATTATTAAAATAAAATTATAATAT
Found at i:72014489 original size:35 final size:33
Alignment explanation
Indices: 72014432--72014507 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 33
72014422 TTACTATTAA
72014432 AATTTATTATTAAAATAAAATTATAATATTTAAAT
1 AATTTATTA-TAAAATAAAATTATAATA-TTAAAT
*
72014467 AATTTATTA-AAAATAATTAATTATATTATTAAAT
1 AATTTATTATAAAATAA--AATTATAATATTAAAT
72014501 -ATTTATT
1 AATTTATT
72014508 TTTAATAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
33 14 0.37
34 6 0.16
35 18 0.47
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (33 bp):
AATTTATTATAAAATAAAATTATAATATTAAAT
Found at i:72014521 original size:35 final size:34
Alignment explanation
Indices: 72014426--72014521 Score: 92
Period size: 35 Copynumber: 2.8 Consensus size: 34
72014416 AAATCATTAC
* *
72014426 TATTAAA-ATTTATTATTAAAATA-AAATTATAA
1 TATTAAATATTTATTTTTAAAATATTAATTATAA
* *
72014458 TATTTAAATAATTTA--TTAAAAATAATTAATTATAT
1 TA-TTAAAT-ATTTATTTTTAAAAT-ATTAATTATAA
72014493 TATTAAATATTTATTTTTAATAATATTAA
1 TATTAAATATTTATTTTTAA-AATATTAA
72014522 ACATTATAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
32 2 0.04
33 16 0.31
34 7 0.14
35 23 0.45
36 3 0.06
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (34 bp):
TATTAAATATTTATTTTTAAAATATTAATTATAA
Found at i:72019779 original size:5 final size:5
Alignment explanation
Indices: 72019763--72019812 Score: 52
Period size: 5 Copynumber: 10.4 Consensus size: 5
72019753 AGATAATATT
* *
72019763 TTTTA -TTT- TTTTA TTTTA TTATT- TATTA TTTTA TTTTA TTTAA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA
72019811 TT
1 TT
72019813 AATTTAGCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
4 8 0.22
5 27 0.73
6 2 0.05
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:72019787 original size:20 final size:20
Alignment explanation
Indices: 72019759--72019802 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
72019749 AGGAAGATAA
* *
72019759 TATTTTTTATTTTTTTATTT
1 TATTATTTATTATTTTATTT
72019779 TATTATTTATTATTTTATTT
1 TATTATTTATTATTTTATTT
72019799 TATT
1 TATT
72019803 TAATTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (20 bp):
TATTATTTATTATTTTATTT
Found at i:72019791 original size:15 final size:14
Alignment explanation
Indices: 72019759--72019812 Score: 60
Period size: 15 Copynumber: 3.9 Consensus size: 14
72019749 AGGAAGATAA
72019759 TATT-TTTTATTTT
1 TATTATTTTATTTT
72019772 T-TTATTTTATTATT
1 TATTATTTTATT-TT
72019786 TATTATTTTA-TTT
1 TATTATTTTATTTT
72019799 TATTTAATTTTATT
1 TA-TT-ATTTTATT
72019813 AATTTAGCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 2 0.06
13 12 0.34
14 6 0.17
15 14 0.40
16 1 0.03
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (14 bp):
TATTATTTTATTTT
Found at i:72019811 original size:20 final size:20
Alignment explanation
Indices: 72019765--72019812 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
72019755 ATAATATTTT
* *
72019765 TTATTTTTTTATTTTATTAT
1 TTATTATTTTATTTTATTAA
72019785 TTATTATTTTATTTTATTTAA
1 TTATTATTTTATTTTA-TTAA
72019806 TT-TTATT
1 TTATTATT
72019813 AATTTAGCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (20 bp):
TTATTATTTTATTTTATTAA
Found at i:72026086 original size:38 final size:39
Alignment explanation
Indices: 72026002--72026136 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
72025992 ACCAATATGG
*
72026002 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
72026041 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
72026079 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
72026120 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
72026137 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:72028035 original size:10 final size:9
Alignment explanation
Indices: 72028009--72028039 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
72027999 TTATGTGTTC
72028009 TTTATTTTA
1 TTTATTTTA
72028018 TTTATTTTA
1 TTTATTTTA
72028027 TTCTATTTTA
1 TT-TATTTTA
72028037 TTT
1 TTT
72028040 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:72032533 original size:5 final size:5
Alignment explanation
Indices: 72032510--72032545 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
72032500 CAGTTTCTTT
72032510 TATATA TATAA TAATAA TATAA TATAA TATAA TATA
1 TATA-A TATAA T-ATAA TATAA TATAA TATAA TATA
72032546 CTTAATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 20 0.69
6 9 0.31
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:72038667 original size:38 final size:39
Alignment explanation
Indices: 72038583--72038717 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
72038573 ACCAATATGG
*
72038583 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
72038622 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
72038660 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
72038701 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
72038718 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:72040297 original size:5 final size:5
Alignment explanation
Indices: 72040279--72040309 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
72040269 TTTCTTTTAT
72040279 ATATA ATAATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA
72040310 CTTAATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:72041438 original size:46 final size:46
Alignment explanation
Indices: 72041386--72041567 Score: 222
Period size: 46 Copynumber: 4.0 Consensus size: 46
72041376 AGTGTGCTCT
* *
72041386 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
72041432 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * *
72041478 GTGATATGAAATGAACAAGACCATTGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
72041524 ATGACA-GAAAATGAGTAAGACCATAGCTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
72041568 TCATGTCAAA
Statistics
Matches: 121, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 120 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:72051315 original size:32 final size:32
Alignment explanation
Indices: 72051266--72051356 Score: 100
Period size: 32 Copynumber: 2.9 Consensus size: 32
72051256 TTTTTTTTTA
*
72051266 TTTT-AATTTGATTAATTTTAATCTTAATATTT
1 TTTTAAATTTGA-TAATTTTAATCTTAATACTT
*
72051298 TTTTGAA-TTGATCAATTTTAATTCTT-ATACTT
1 TTTTAAATTTGAT-AATTTTAA-TCTTAATACTT
*
72051330 TTTTAAATTTGA-AATTTTAATCCTAAT
1 TTTTAAATTTGATAATTTTAATCTTAAT
72051357 CTAAACCGTA
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
30 3 0.06
31 11 0.22
32 27 0.53
33 10 0.20
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.57
Consensus pattern (32 bp):
TTTTAAATTTGATAATTTTAATCTTAATACTT
Found at i:72054490 original size:66 final size:67
Alignment explanation
Indices: 72054405--72054529 Score: 200
Period size: 66 Copynumber: 1.9 Consensus size: 67
72054395 TTAAAATATT
* * *
72054405 TTTCGCATATATATTTATAATCTAAGTTT-TAGTTTCTTGATAAATTTTATATA-TATTTAAAGA
1 TTTCACATATATATTTATAATCT-AGTTTGTAGTTTCTTAATAAATTATATATATTATTTAAAGA
72054468 TTC
65 TTC
72054471 TTTCACATATATATTTATAATCTAGTTTGTAGTTTCTTAATAAATTATATATATTATTT
1 TTTCACATATATATTTATAATCTAGTTTGTAGTTTCTTAATAAATTATATATATTATTT
72054530 TCGTAAAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
65 5 0.09
66 44 0.81
67 5 0.09
ACGTcount: A:0.34, C:0.07, G:0.06, T:0.53
Consensus pattern (67 bp):
TTTCACATATATATTTATAATCTAGTTTGTAGTTTCTTAATAAATTATATATATTATTTAAAGAT
TC
Found at i:72063823 original size:13 final size:13
Alignment explanation
Indices: 72063805--72063829 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72063795 CCAACTCCAC
72063805 ACGGCCGTGCGAT
1 ACGGCCGTGCGAT
72063818 ACGGCCGTGCGA
1 ACGGCCGTGCGA
72063830 AAATAGGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.40, T:0.12
Consensus pattern (13 bp):
ACGGCCGTGCGAT
Found at i:72070040 original size:46 final size:44
Alignment explanation
Indices: 72069936--72070043 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
72069926 TGTCTTTGAC
** * * *
72069936 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
72069980 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
72070026 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
72070044 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:72073866 original size:18 final size:19
Alignment explanation
Indices: 72073828--72073868 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
72073818 TGGTTCATGT
72073828 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
72073847 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
72073865 TTTC
1 TTTC
72073869 TCATTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:72074058 original size:39 final size:38
Alignment explanation
Indices: 72073991--72074125 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
72073981 ACCAATATGG
* * *
72073991 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
72074030 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
72074068 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
72074109 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
72074126 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:72074391 original size:18 final size:19
Alignment explanation
Indices: 72074365--72074403 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
72074355 TTTCAATTCA
72074365 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
72074384 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
72074402 AT
1 AT
72074404 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:72075718 original size:5 final size:5
Alignment explanation
Indices: 72075708--72075744 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
72075698 TTATGTTTAT
72075708 ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT
72075745 TAAAACATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:72076358 original size:12 final size:11
Alignment explanation
Indices: 72076325--72076358 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
72076315 CAAATTCCAC
72076325 AAAATCCTCTT
1 AAAATCCTCTT
72076336 AAAATCCTCTT
1 AAAATCCTCTT
72076347 AAAATCCCTCTT
1 AAAAT-CCTCTT
72076359 CCATTATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 16 0.73
12 6 0.27
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATCCTCTT
Found at i:72078431 original size:15 final size:16
Alignment explanation
Indices: 72078400--72078433 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
72078390 AATTTCTTTG
72078400 TTCAAAAACAAATTTTA
1 TTCAAAAAC-AATTTTA
72078417 TTCAAAAAC-ATTTTA
1 TTCAAAAACAATTTTA
72078432 TT
1 TT
72078434 TGTCATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
17 9 0.53
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (16 bp):
TTCAAAAACAATTTTA
Found at i:72080729 original size:16 final size:16
Alignment explanation
Indices: 72080677--72080737 Score: 59
Period size: 16 Copynumber: 3.6 Consensus size: 16
72080667 TTTATGTAAG
72080677 TTTATTTAATATTAGTT
1 TTTATTTAAT-TTAGTT
* **
72080694 ATTAATTTAATTTAAAT
1 -TTTATTTAATTTAGTT
*
72080711 TTTATTTTATTTAGTT
1 TTTATTTAATTTAGTT
72080727 TTTATTATAAT
1 TTTATT-TAAT
72080738 GTTATATTAT
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
16 18 0.53
17 7 0.21
18 9 0.26
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (16 bp):
TTTATTTAATTTAGTT
Found at i:72081808 original size:2 final size:2
Alignment explanation
Indices: 72081801--72081834 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
72081791 GAATGTGAAG
72081801 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72081835 TTTTTTTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72081897 original size:21 final size:22
Alignment explanation
Indices: 72081873--72081913 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
72081863 TTGAGTAATG
*
72081873 TTTTAAATTTAC-TCTTTTTTT
1 TTTTAAATTAACTTCTTTTTTT
*
72081894 TTTTTAATTAACTTCTTTTT
1 TTTTAAATTAACTTCTTTTT
72081914 AACATGTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTAAATTAACTTCTTTTTTT
Found at i:72095331 original size:3 final size:3
Alignment explanation
Indices: 72095323--72095362 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
72095313 ATACAACATA
*
72095323 AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
72095363 TTCAATAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:72106773 original size:21 final size:21
Alignment explanation
Indices: 72106747--72106787 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
72106737 TTGTATGTCT
* *
72106747 ACAATTTCATTCTCGTTAGGC
1 ACAATTTCATCCTCCTTAGGC
72106768 ACAATTTCATCCTCCTTAGG
1 ACAATTTCATCCTCCTTAGG
72106788 AAAAATACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (21 bp):
ACAATTTCATCCTCCTTAGGC
Found at i:72111257 original size:20 final size:20
Alignment explanation
Indices: 72111232--72111299 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
72111222 TGTAGTTTCA
72111232 AACTTTACTATTTTATGCTC
1 AACTTTACTATTTTATGCTC
* ** *
72111252 AACTTT-CCAAATTATAGTTTC
1 AACTTTACTATTTTAT-G-CTC
72111273 AAACTTTACTATTTTATGCTC
1 -AACTTTACTATTTTATGCTC
72111294 AACTTT
1 AACTTT
72111300 CCAAATTTTC
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
19 6 0.17
20 13 0.36
21 4 0.11
22 7 0.19
23 6 0.17
ACGTcount: A:0.29, C:0.19, G:0.04, T:0.47
Consensus pattern (20 bp):
AACTTTACTATTTTATGCTC
Found at i:72111271 original size:42 final size:42
Alignment explanation
Indices: 72111224--72111306 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
72111214 TTTAACCCTG
72111224 TAGTTTCAAACTTTACTATTTTATGCTCAACTTTCCAAATTA
1 TAGTTTCAAACTTTACTATTTTATGCTCAACTTTCCAAATTA
72111266 TAGTTTCAAACTTTACTATTTTATGCTCAACTTTCCAAATT
1 TAGTTTCAAACTTTACTATTTTATGCTCAACTTTCCAAATT
72111307 TTCATATTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.30, C:0.19, G:0.05, T:0.46
Consensus pattern (42 bp):
TAGTTTCAAACTTTACTATTTTATGCTCAACTTTCCAAATTA
Found at i:72111307 original size:21 final size:21
Alignment explanation
Indices: 72111241--72111308 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
72111231 AAACTTTACT
72111241 ATTTTATGCTCAACTTTCCAA
1 ATTTTATGCTCAACTTTCCAA
* * * *
72111262 ATTATA-GTTTCAAACTTTAC-T
1 ATTTTATG-CTC-AACTTTCCAA
72111283 ATTTTATGCTCAACTTTCCAA
1 ATTTTATGCTCAACTTTCCAA
72111304 ATTTT
1 ATTTT
72111309 CATATTTCAT
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
20 8 0.23
21 19 0.54
22 8 0.23
ACGTcount: A:0.29, C:0.19, G:0.04, T:0.47
Consensus pattern (21 bp):
ATTTTATGCTCAACTTTCCAA
Found at i:72128984 original size:7 final size:8
Alignment explanation
Indices: 72128971--72129000 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
72128961 AAAATTTAAA
72128971 AATTTTTT
1 AATTTTTT
72128979 AATTTTTT
1 AATTTTTT
72128987 AATTTTTT
1 AATTTTTT
72128995 AATTTT
1 AATTTT
72129001 ATTATGTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
AATTTTTT
Found at i:72130676 original size:18 final size:18
Alignment explanation
Indices: 72130653--72130688 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
72130643 ATCCAATTGC
72130653 TTTGTCCAATGACCTCGT
1 TTTGTCCAATGACCTCGT
72130671 TTTGTCCAATGACCTCGT
1 TTTGTCCAATGACCTCGT
72130689 CATGTGTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.39
Consensus pattern (18 bp):
TTTGTCCAATGACCTCGT
Found at i:72133139 original size:17 final size:17
Alignment explanation
Indices: 72133117--72133167 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
72133107 GAATTACCTA
72133117 AAATTTTATATATTTTT
1 AAATTTTATATATTTTT
*
72133134 AAA-TTTAAATTATTTTT
1 AAATTTTATA-TATTTTT
* *
72133151 AGTATTTTTTATATTTT
1 A-AATTTTATATATTTT
72133168 GATATATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
16 5 0.19
17 11 0.41
18 7 0.26
19 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
AAATTTTATATATTTTT
Found at i:72135998 original size:3 final size:3
Alignment explanation
Indices: 72135992--72136060 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
72135982 TTATCACTTC
72135992 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
72136040 TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
72136061 ATTTTACTAT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:72136458 original size:22 final size:21
Alignment explanation
Indices: 72136419--72136517 Score: 76
Period size: 22 Copynumber: 4.5 Consensus size: 21
72136409 TTTTCTTTTA
72136419 ATATTTTATATATTATTATGTAC
1 ATATTTT-TATA-TATTATGTAC
* *
72136442 ATATTTTGATATCATTA-GTTAT
1 ATATTTTTATAT-ATTATG-TAC
*
72136464 ATATTTTTATATATTATGTAT
1 ATATTTTTATATATTATGTAC
* *
72136485 ATTTCTTTTACTAT-TTCATGTAT
1 ATAT-TTTTA-TATATT-ATGTAC
72136508 ATATTTTTAT
1 ATATTTTTAT
72136518 TTCATCTCAT
Statistics
Matches: 65, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
21 13 0.20
22 33 0.51
23 19 0.29
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (21 bp):
ATATTTTTATATATTATGTAC
Found at i:72136578 original size:25 final size:26
Alignment explanation
Indices: 72136520--72136587 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 26
72136510 ATTTTTATTT
* * *
72136520 CATCTCATGTATAAATTTTTGAATAC
1 CATCTTATATATATATTTTTGAATAC
* * *
72136546 TATGTTATATCTATATTTTT-AATAC
1 CATCTTATATATATATTTTTGAATAC
*
72136571 CATCTTATGTATATATT
1 CATCTTATATATATATT
72136588 ATTATATCTA
Statistics
Matches: 32, Mismatches: 10, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
25 18 0.56
26 14 0.44
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (26 bp):
CATCTTATATATATATTTTTGAATAC
Found at i:72136825 original size:3 final size:3
Alignment explanation
Indices: 72136782--72136810 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
72136772 TGCGTGTGCA
72136782 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
72136811 GTATATGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:72136838 original size:10 final size:10
Alignment explanation
Indices: 72136823--72136847 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
72136813 ATATGTTTAT
72136823 TATATATGTA
1 TATATATGTA
72136833 TATATATGTA
1 TATATATGTA
72136843 TATAT
1 TATAT
72136848 TTTAATAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (10 bp):
TATATATGTA
Found at i:72136838 original size:23 final size:23
Alignment explanation
Indices: 72136796--72136841 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
72136786 ATTATTATTA
72136796 TTATTATTATTATTAGTATATGT
1 TTATTATTATTATTAGTATATGT
72136819 TTATTATATATGTA-TA-TATATGT
1 TTATTAT-TAT-TATTAGTATATGT
72136842 ATATATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 14 0.67
24 5 0.24
25 2 0.10
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.59
Consensus pattern (23 bp):
TTATTATTATTATTAGTATATGT
Found at i:72136865 original size:25 final size:26
Alignment explanation
Indices: 72136831--72136927 Score: 80
Period size: 25 Copynumber: 3.9 Consensus size: 26
72136821 ATTATATATG
72136831 TATATATATGTATATA-TTTTAATAAC
1 TATAT-TATGTATATACTTTTAATAAC
* * *
72136857 TATATTATGTATGTATTTTTAA-CAC
1 TATATTATGTATATACTTTTAATAAC
* * *
72136882 TATTTTATGTATACACTTTCAAT-A-
1 TATATTATGTATATACTTTTAATAAC
*
72136906 T-TATTATGTATTTA-TTTTAATA
1 TATATTATGTATATACTTTTAATA
72136928 CATATGTACA
Statistics
Matches: 57, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
22 6 0.11
23 10 0.18
24 1 0.02
25 29 0.51
26 11 0.19
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.54
Consensus pattern (26 bp):
TATATTATGTATATACTTTTAATAAC
Found at i:72137002 original size:31 final size:30
Alignment explanation
Indices: 72136937--72137003 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 30
72136927 ACATATGTAC
72136937 ATAT-TTATGTAGTATTATTAATATATTTT
1 ATATGTTATGTAGTATTATTAATATATTTT
*
72136966 TTATGTTAT-TAGTATT-TCTAATATATATTGT
1 ATATGTTATGTAGTATTAT-TAATATAT-TT-T
72136997 ATATGTT
1 ATATGTT
72137004 CATTTTTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 1 0.03
29 18 0.56
30 6 0.19
31 7 0.22
ACGTcount: A:0.31, C:0.01, G:0.09, T:0.58
Consensus pattern (30 bp):
ATATGTTATGTAGTATTATTAATATATTTT
Found at i:72137031 original size:23 final size:23
Alignment explanation
Indices: 72136987--72137034 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
72136977 GTATTTCTAA
* *
72136987 TATATATTGTATATGTTCATTTT
1 TATATATTATATATATTCATTTT
72137010 TATATATTATATATATAT-ATTTT
1 TATATATTATATATAT-TCATTTT
72137033 TA
1 TA
72137035 GTATTATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 21 0.95
24 1 0.05
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (23 bp):
TATATATTATATATATTCATTTT
Found at i:72140131 original size:21 final size:21
Alignment explanation
Indices: 72140106--72140145 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
72140096 TTCCATACTT
*
72140106 AATTTTAATTATTAATTAATG
1 AATTTAAATTATTAATTAATG
72140127 AATTTAAATTATTAATTAA
1 AATTTAAATTATTAATTAA
72140146 ATTTAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (21 bp):
AATTTAAATTATTAATTAATG
Found at i:72140148 original size:18 final size:20
Alignment explanation
Indices: 72140106--72140153 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
72140096 TTCCATACTT
*
72140106 AATTTTAATTATTAATTAATG
1 AATTTAAATTATTAATTAA-G
72140127 AATTTAAATTATTAATT-A-
1 AATTTAAATTATTAATTAAG
72140145 AATTTAAAT
1 AATTTAAAT
72140154 ATCATGAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 9 0.35
20 1 0.04
21 16 0.62
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
AATTTAAATTATTAATTAAG
Found at i:72142799 original size:15 final size:15
Alignment explanation
Indices: 72142779--72142808 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
72142769 TAATACTTAT
*
72142779 AATTCTCATTTTAAA
1 AATTCTCATTATAAA
72142794 AATTCTCATTATAAA
1 AATTCTCATTATAAA
72142809 TACACCATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (15 bp):
AATTCTCATTATAAA
Found at i:72144272 original size:2 final size:2
Alignment explanation
Indices: 72144267--72144293 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
72144257 AAGAGAATAA
72144267 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
72144294 AAAAAAAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:72152315 original size:2 final size:2
Alignment explanation
Indices: 72152308--72152335 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
72152298 AAGGAAGAGC
72152308 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72152336 GATTGGTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72154033 original size:7 final size:7
Alignment explanation
Indices: 72154021--72154047 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
72154011 GGCAGGAAAG
72154021 TGAAAAC
1 TGAAAAC
72154028 TGAAAAC
1 TGAAAAC
72154035 TGAAAAC
1 TGAAAAC
72154042 TGAAAA
1 TGAAAA
72154048 GGCTGTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.11, G:0.15, T:0.15
Consensus pattern (7 bp):
TGAAAAC
Found at i:72157335 original size:31 final size:32
Alignment explanation
Indices: 72157293--72157386 Score: 88
Period size: 31 Copynumber: 3.0 Consensus size: 32
72157283 CTAGCCTAAC
*
72157293 CTTAAAAAAAAAACATTT-A-ATAGCCTAATGA
1 CTTAAATAAAAAAC-TTTCAGATAGCCTAATGA
* **
72157324 TTTAAAT-AAAAACTTTCAGATAGTTTAATGA
1 CTTAAATAAAAAACTTTCAGATAGCCTAATGA
* **
72157355 CTTAAAT-AAAAACTTTCAAATAGTTTAATGA
1 CTTAAATAAAAAACTTTCAGATAGCCTAATGA
72157386 C
1 C
72157387 CATTTTGTAA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
29 3 0.05
30 7 0.13
31 45 0.82
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (32 bp):
CTTAAATAAAAAACTTTCAGATAGCCTAATGA
Found at i:72158291 original size:22 final size:22
Alignment explanation
Indices: 72158244--72158291 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
72158234 TATTTAAGTT
* *
72158244 AATAATTAAATTAGTGATTTAT
1 AATAATTAAATTAGTGAATTAA
72158266 AATAATTAAA-TAGTGCAATTAA
1 AATAATTAAATTAGTG-AATTAA
72158288 AATA
1 AATA
72158292 GTGATCATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.38
Consensus pattern (22 bp):
AATAATTAAATTAGTGAATTAA
Found at i:72174787 original size:28 final size:27
Alignment explanation
Indices: 72174743--72174795 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
72174733 GGGAAATTTA
*
72174743 TAATATTATGACATGAATAAATATTAAT
1 TAATATTATGACATGAA-AAAAATTAAT
*
72174771 TAATATTATAGA-GTGAAAAAAATTA
1 TAATATTAT-GACATGAAAAAAATTA
72174796 GCAAAAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 7 0.32
28 13 0.59
29 2 0.09
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (27 bp):
TAATATTATGACATGAAAAAAATTAAT
Found at i:72177692 original size:18 final size:19
Alignment explanation
Indices: 72177664--72177709 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
72177654 GAAACAAAAT
*
72177664 AATATATAAAAA-AATTAA
1 AATAAATAAAAAGAATTAA
* *
72177682 AGTAAATAAAAAGATTTAA
1 AATAAATAAAAAGAATTAA
72177701 AATAAATAA
1 AATAAATAA
72177710 TAAATGAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (19 bp):
AATAAATAAAAAGAATTAA
Found at i:72177750 original size:30 final size:29
Alignment explanation
Indices: 72177716--72177823 Score: 114
Period size: 28 Copynumber: 3.8 Consensus size: 29
72177706 ATAATAAATG
*
72177716 AAACAACTTAAAGTAAATAATATATTAAAA
1 AAACAACTTAAAATAAATAATATA-TAAAA
** * * *
72177746 AAACAGTTTCAAATAAATAATGTAT-GAA
1 AAACAACTTAAAATAAATAATATATAAAA
*
72177774 AAA-AACTTAAAATAAATAATA-ATAATA
1 AAACAACTTAAAATAAATAATATATAAAA
*
72177801 AAACAGCTTAAAATAAATAATAT
1 AAACAACTTAAAATAAATAATAT
72177824 GAAATTTTTA
Statistics
Matches: 62, Mismatches: 13, Indels: 7
0.76 0.16 0.09
Matches are distributed among these distances:
26 2 0.03
27 18 0.29
28 22 0.35
29 1 0.02
30 19 0.31
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.27
Consensus pattern (29 bp):
AAACAACTTAAAATAAATAATATATAAAA
Found at i:72177766 original size:56 final size:55
Alignment explanation
Indices: 72177697--72177822 Score: 164
Period size: 55 Copynumber: 2.3 Consensus size: 55
72177687 ATAAAAAGAT
* * *
72177697 TTAAAATAAATAATAAATG-AAACAACTTAAAGTAAATAATATATTAAAAAAACAGT
1 TTAAAATAAATAATAAATGAAAAAAACTTAAAATAAATAATA-A-TAAAAAAACAGC
* ** *
72177753 TTCAAATAAATAATGTATGAAAAAAACTTAAAATAAATAATAATAATAAAACAGC
1 TTAAAATAAATAATAAATGAAAAAAACTTAAAATAAATAATAATAAAAAAACAGC
72177808 TTAAAATAAATAATA
1 TTAAAATAAATAATA
72177823 TGAAATTTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
55 23 0.38
56 17 0.28
57 20 0.33
ACGTcount: A:0.63, C:0.06, G:0.05, T:0.27
Consensus pattern (55 bp):
TTAAAATAAATAATAAATGAAAAAAACTTAAAATAAATAATAATAAAAAAACAGC
Found at i:72177775 original size:27 final size:28
Alignment explanation
Indices: 72177697--72177822 Score: 118
Period size: 30 Copynumber: 4.5 Consensus size: 28
72177687 ATAAAAAGAT
* *
72177697 TTAAAATAAATAAT-A-AATGAAACAAC
1 TTAAAATAAATAATAATAATAAAACAGC
* * *
72177723 TTAAAGTAAATAATATATTAAAAAAACAGT
1 TTAAAATAAATAATA-A-TAATAAAACAGC
* *
72177753 TTCAAATAAATAATGTATGAA-AAAA-A-C
1 TTAAAATAAATAAT-AAT-AATAAAACAGC
72177780 TTAAAATAAATAATAATAATAAAACAGC
1 TTAAAATAAATAATAATAATAAAACAGC
72177808 TTAAAATAAATAATA
1 TTAAAATAAATAATA
72177823 TGAAATTTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
25 2 0.03
26 19 0.24
27 14 0.17
28 18 0.22
29 5 0.06
30 22 0.28
ACGTcount: A:0.63, C:0.06, G:0.05, T:0.27
Consensus pattern (28 bp):
TTAAAATAAATAATAATAATAAAACAGC
Found at i:72177930 original size:27 final size:25
Alignment explanation
Indices: 72177687--72178000 Score: 186
Period size: 26 Copynumber: 11.9 Consensus size: 25
72177677 ATTAAAGTAA
*
72177687 ATAAAAAGATTTAAAATAAATAATAA
1 ATAAAAAG-TTTAAAATAAATAATAT
* *
72177713 ATGAAACAA-CTTAAAGTAAATAATAT
1 AT-AAA-AAGTTTAAAATAAATAATAT
* *
72177739 ATTAAAAAAACAGTTTCAAATAAATAATGT
1 A-T---AAAA-AGTTTAAAATAAATAATAT
**
72177769 ATGAAAAAAACTTAAAATAAATAATAAT
1 AT--AAAAAGTTTAAAATAAATAAT-AT
*
72177797 AATAAAACAGCTTAAAATAAAT-A-AT
1 -ATAAAA-AGTTTAAAATAAATAATAT
* ** * *
72177822 ATGAAATTTTTAAAATGAATAATAG
1 ATAAAAAGTTTAAAATAAATAATAT
* * * *
72177847 ATAAAACAATTTAAATTGAATATTAT
1 ATAAAA-AGTTTAAAATAAATAATAT
* *
72177873 ACGTAAAAA-TTTTAAATAGATAATAT
1 A--TAAAAAGTTTAAAATAAATAATAT
72177899 ATAAAATAGTTTAAAATAAATAATATT
1 ATAAAA-AGTTTAAAATAAATAATA-T
* *
72177926 ATAAATAATGTTTAAAATAACTAATAA
1 ATAAA-AA-GTTTAAAATAAATAATAT
* *
72177953 ATAAAAATTTTAAAATAAACAATAT
1 ATAAAAAGTTTAAAATAAATAATAT
* *
72177978 ATGAAAAGATTTTAAATAAATAA
1 ATAAAAAG-TTTAAAATAAATAA
72178001 GATAAGCAAG
Statistics
Matches: 224, Mismatches: 43, Indels: 42
0.72 0.14 0.14
Matches are distributed among these distances:
23 10 0.04
24 11 0.05
25 29 0.13
26 73 0.33
27 36 0.16
28 44 0.20
29 7 0.03
30 14 0.06
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (25 bp):
ATAAAAAGTTTAAAATAAATAATAT
Found at i:72182249 original size:19 final size:18
Alignment explanation
Indices: 72182225--72182260 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
72182215 GAAACCTTTA
72182225 TATACAAATAAATATTGAG
1 TATACAAATAAA-ATTGAG
72182244 TATACAAATAAAATTGA
1 TATACAAATAAAATTGA
72182261 TGATGTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.31
Consensus pattern (18 bp):
TATACAAATAAAATTGAG
Found at i:72182619 original size:2 final size:2
Alignment explanation
Indices: 72182612--72182639 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
72182602 TATATGAGTT
72182612 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
72182640 AAAGAATATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:72182684 original size:2 final size:2
Alignment explanation
Indices: 72182677--72182707 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
72182667 TGGAAATTAA
72182677 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
72182708 AGAATATCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:72182717 original size:66 final size:66
Alignment explanation
Indices: 72182612--72182744 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
72182602 TATATGAGTT
72182612 TATATATATATATATATATATATATATAAAAGAATATCCTAGTTTTAATAATAGATGGAAATTAA
1 TATATATATATATATATATATATATATAAAAGAATATCCTAGTTTTAATAATAGATGGAAATTAA
72182677 A
66 A
*
72182678 TATATATATATATATATATATATATATATAAGAATATCCTAGTTTTAATAATAGATGGAAATTAA
1 TATATATATATATATATATATATATATAAAAGAATATCCTAGTTTTAATAATAGATGGAAATTAA
72182743 A
66 A
72182744 T
1 T
72182745 GTAAATACAA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (66 bp):
TATATATATATATATATATATATATATAAAAGAATATCCTAGTTTTAATAATAGATGGAAATTAA
A
Found at i:72184571 original size:13 final size:16
Alignment explanation
Indices: 72184538--72184583 Score: 53
Period size: 14 Copynumber: 3.1 Consensus size: 16
72184528 AAATGGACTC
72184538 TTTGGACTTATTTATT
1 TTTGGACTTATTTATT
72184554 TTTGGA-TT-TTTATT
1 TTTGGACTTATTTATT
* *
72184568 TTGGGTC-TATTTATT
1 TTTGGACTTATTTATT
72184583 T
1 T
72184584 ACAAATGAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 11 0.42
15 9 0.35
16 6 0.23
ACGTcount: A:0.15, C:0.04, G:0.15, T:0.65
Consensus pattern (16 bp):
TTTGGACTTATTTATT
Found at i:72184858 original size:119 final size:118
Alignment explanation
Indices: 72184727--72184985 Score: 367
Period size: 119 Copynumber: 2.2 Consensus size: 118
72184717 AAAAAAATAA
* * *
72184727 TTTTGGTGCTGGCCTTTTAATGGCCGATACCACTCTAGTAAAAAAAAATTTTCAAAATTTTTTGG
1 TTTTGGTGCTGGCCTTCTAATGGCCGACACCACTCTAGTAAAAAAAAA-TTT-AAAATTTTTTGA
* * * * **
72184792 GTGTTGGTCTTCTACTGGCCAGCACTTGTACAAAAATATC-AGGAAATATTTTTT
64 GTGCTAGTCTTCTAATGACCAGCACCAGTACAAAAATATCAAGGAAATATTTTTT
*
72184846 TTTTGGTGCTGGCCTTCTAATGGCCGACACCACTGTAGTAAAAAAAAATTTAAAATTTTTTGAGT
1 TTTTGGTGCTGGCCTTCTAATGGCCGACACCACTCTAGTAAAAAAAAATTTAAAATTTTTTGAGT
* * * *
72184911 GCTAGTCTTCTAATGACCGGTACCAGTACAAAAATATCAAGGAATTTTTTTTT
66 GCTAGTCTTCTAATGACCAGCACCAGTACAAAAATATCAAGGAAATATTTTTT
72184964 TTTTGGTGCTGGCCTTCTAATG
1 TTTTGGTGCTGGCCTTCTAATG
72184986 AACAGGCAAA
Statistics
Matches: 125, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
117 43 0.34
118 37 0.30
119 45 0.36
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (118 bp):
TTTTGGTGCTGGCCTTCTAATGGCCGACACCACTCTAGTAAAAAAAAATTTAAAATTTTTTGAGT
GCTAGTCTTCTAATGACCAGCACCAGTACAAAAATATCAAGGAAATATTTTTT
Found at i:72184905 original size:59 final size:58
Alignment explanation
Indices: 72184727--72184906 Score: 145
Period size: 59 Copynumber: 3.0 Consensus size: 58
72184717 AAAAAAATAA
* *
72184727 TTTTGGTGCTGGCCTTTTAATGGCCGATACCACTCTAGTAAAAAAAAATTTTCAAAA-TTT
1 TTTTGGTGCTGGCCTTCTAATGGCCGACACCACT-TAGTAAAAAAAAA-TTT-AAAATTTT
* * * * * * * **
72184787 TTTGGGTGTTGGTCTTCTACTGG-C--CAGCACTT-GTACAAAAATATCAGGAAATATTTTTT
1 TTTTGGTGCTGGCCTTCTAATGGCCGACACCACTTAGTAAAAAAAAAT--TTAAA-A--TTTT
72184846 TTTTGGTGCTGGCCTTCTAATGGCCGACACCACTGTAGTAAAAAAAAATTTAAAATTTT
1 TTTTGGTGCTGGCCTTCTAATGGCCGACACCACT-TAGTAAAAAAAAATTTAAAATTTT
72184905 TT
1 TT
72184907 GAGTGCTAGT
Statistics
Matches: 89, Mismatches: 20, Indels: 23
0.67 0.15 0.17
Matches are distributed among these distances:
54 1 0.01
55 12 0.13
56 2 0.02
57 5 0.06
59 29 0.33
60 19 0.21
61 1 0.01
62 9 0.10
63 1 0.01
64 10 0.11
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (58 bp):
TTTTGGTGCTGGCCTTCTAATGGCCGACACCACTTAGTAAAAAAAAATTTAAAATTTT
Found at i:72187295 original size:1 final size:1
Alignment explanation
Indices: 72187289--72187316 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
72187279 TTTCAAAGTG
72187289 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
72187317 CAGCAGACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:72194530 original size:37 final size:36
Alignment explanation
Indices: 72194480--72194566 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
72194470 TACGAAGTCT
72194480 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
72194516 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
72194553 TCACCCGGAACATA
1 T-ACCCGG-ACATA
72194567 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:72194684 original size:50 final size:49
Alignment explanation
Indices: 72194615--72194709 Score: 145
Period size: 50 Copynumber: 1.9 Consensus size: 49
72194605 ATTCACATTA
* * *
72194615 GCCATTCGGCTTTACCACATATATATATATATTTCACATTCATCACGTCG
1 GCCATTAGGCCTTACCACATATATATACAT-TTTCACATTCATCACGTCG
*
72194665 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCAC
1 GCCATTAGGCCTTACCACATATATATACATTTTCACATTCATCAC
72194710 ATATATATAC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
49 15 0.37
50 26 0.63
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.36
Consensus pattern (49 bp):
GCCATTAGGCCTTACCACATATATATACATTTTCACATTCATCACGTCG
Found at i:72194708 original size:27 final size:27
Alignment explanation
Indices: 72194678--72194738 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
72194668 ATTAGGCCTT
*
72194678 ATCACATATATATACATTTTCACATTC
1 ATCACATATATATACACTTTCACATTC
72194705 ATCACATATATATACACTTTCACATTC
1 ATCACATATATATACACTTTCACATTC
*
72194732 GTCACAT
1 ATCACAT
72194739 CGGCCATTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.38
Consensus pattern (27 bp):
ATCACATATATATACACTTTCACATTC
Found at i:72194742 original size:76 final size:75
Alignment explanation
Indices: 72194635--72194785 Score: 248
Period size: 76 Copynumber: 2.0 Consensus size: 75
72194625 TTTACCACAT
* * *
72194635 ATATATATATATTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCA
1 ATATATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
72194700 CATTCATCAC
66 CATTCATCAC
*
72194710 ATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ATATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
*
72194775 ACATTCGTCAC
65 ACATTCATCAC
72194786 GCCATTAGGC
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
75 10 0.14
76 60 0.86
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (75 bp):
ATATATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
CATTCATCAC
Found at i:72194761 original size:49 final size:49
Alignment explanation
Indices: 72194705--72195005 Score: 520
Period size: 49 Copynumber: 6.2 Consensus size: 49
72194695 TTTCACATTC
72194705 ATCACATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTT
1 ATCACATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTT
72194754 ATCACATATATATACACTTTCACATTCGT--CA-C-GCCATTAGGCCTT
1 ATCACATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTT
* * *
72194799 ATCACATATATATACACTTTCACATTCATCACGTCAGCCATTAGGCCTT
1 ATCACATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTT
* *
72194848 ATCACATATATATACACTTTCACATTCGTCACGTCAGCCATTAGGCCTT
1 ATCACATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTT
72194897 ATCACATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTT
1 ATCACATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTT
*
72194946 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTT
72194995 ATCACATATAT
1 ATCACATATAT
72195006 TATTATGTAC
Statistics
Matches: 242, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
45 41 0.17
46 1 0.00
47 3 0.01
48 1 0.00
49 196 0.81
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
ATCACATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTT
Found at i:72200593 original size:16 final size:17
Alignment explanation
Indices: 72200555--72200596 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
72200545 TTTTTTGTTG
72200555 TTTTTTTTTTGCTAGAA
1 TTTTTTTTTTGCTAGAA
**
72200572 -AATTTTTTTGCT-GAA
1 TTTTTTTTTTGCTAGAA
72200587 TTTTTTTTTT
1 TTTTTTTTTT
72200597 TTGCTCTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 3
0.74 0.15 0.11
Matches are distributed among these distances:
15 3 0.15
16 17 0.85
ACGTcount: A:0.17, C:0.05, G:0.10, T:0.69
Consensus pattern (17 bp):
TTTTTTTTTTGCTAGAA
Found at i:72200885 original size:29 final size:29
Alignment explanation
Indices: 72200809--72200909 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
72200799 ACTTCTGGGG
* ** *
72200809 CTAAATGTAATTTTTAGAAAATTTAGGGT
1 CTAAATGAAATTTAAAGAAAGTTTAGGGT
* *
72200838 -TAAATGCAATTTAAGGAAAGTTTAGGGT
1 CTAAATGAAATTTAAAGAAAGTTTAGGGT
*
72200866 CTAAGTGAAATTTAAAGAAAGTTTAAGGGT
1 CTAAATGAAATTTAAAGAAAGTTT-AGGGT
*
72200896 CAAAATGAAATTTA
1 CTAAATGAAATTTA
72200910 GGAAAAATTT
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
28 23 0.38
29 20 0.33
30 17 0.28
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.34
Consensus pattern (29 bp):
CTAAATGAAATTTAAAGAAAGTTTAGGGT
Done.