Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 249 of 292
Found at i:72443843 original size:29 final size:29
Alignment explanation
Indices: 72443811--72443873 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
72443801 TTCCACTAGA
72443811 TATACACTATCCATAGAAAATCCATTTTT
1 TATACACTATCCATAGAAAATCCATTTTT
* *
72443840 TATACACTCTCCATAGAAAATTCATTTTT
1 TATACACTATCCATAGAAAATCCATTTTT
72443869 TATAC
1 TATAC
72443874 CCCCGAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.37, C:0.21, G:0.03, T:0.40
Consensus pattern (29 bp):
TATACACTATCCATAGAAAATCCATTTTT
Found at i:72444262 original size:9 final size:9
Alignment explanation
Indices: 72444244--72444397 Score: 83
Period size: 9 Copynumber: 17.6 Consensus size: 9
72444234 TATTTATGTA
72444244 TTATGTAAG
1 TTATGTAAG
*
72444253 TTAAGTAAG
1 TTATGTAAG
*
72444262 TTCTGTAAG
1 TTATGTAAG
72444271 TTATGTAAG
1 TTATGTAAG
*
72444280 ATATG--A-
1 TTATGTAAG
72444286 -TATGATAA-
1 TTATG-TAAG
* *
72444294 ATATTTAAG
1 TTATGTAAG
72444303 TATTATGTAAG
1 --TTATGTAAG
*
72444314 TTATGATATG
1 TTATG-TAAG
* * *
72444324 ATATAT-AT
1 TTATGTAAG
72444332 TTATGTAAG
1 TTATGTAAG
72444341 TTATGTAAG
1 TTATGTAAG
72444350 TTATGTAAG
1 TTATGTAAG
*
72444359 TTATGGTATG
1 TTAT-GTAAG
* * *
72444369 ATATAT-AT
1 TTATGTAAG
72444377 TTATGT-A-
1 TTATGTAAG
72444384 TTATGTAAG
1 TTATGTAAG
72444393 TTATG
1 TTATG
72444398 ATATGATATA
Statistics
Matches: 110, Mismatches: 23, Indels: 24
0.70 0.15 0.15
Matches are distributed among these distances:
5 4 0.04
7 7 0.06
8 14 0.13
9 65 0.59
10 13 0.12
11 7 0.06
ACGTcount: A:0.36, C:0.01, G:0.18, T:0.45
Consensus pattern (9 bp):
TTATGTAAG
Found at i:72444309 original size:34 final size:34
Alignment explanation
Indices: 72444271--72444414 Score: 144
Period size: 34 Copynumber: 3.9 Consensus size: 34
72444261 GTTCTGTAAG
*
72444271 TTATGTAAGATATGATATGATAAATATTTAAGTA
1 TTATGTAAGTTATGATATGATAAATATTTAAGTA
* *
72444305 TTATGTAAGTTATGATATGATATATATTTATGTAA
1 TTATGTAAGTTATGATATGATAAATATTTAAGT-A
*
72444340 GTTATGTAAGTTATGTAAGTTATGGTATGATATATATTTATGTA
1 -TTATGTAAGTTATG--A--TAT-G-AT-A-A-ATATTTAAGTA
*
72444384 TTATGTAAGTTATGATATGATATATATTTAA
1 TTATGTAAGTTATGATATGATAAATATTTAA
72444415 CATTAAGATA
Statistics
Matches: 93, Mismatches: 6, Indels: 22
0.77 0.05 0.18
Matches are distributed among these distances:
34 37 0.40
35 1 0.01
36 15 0.16
37 2 0.02
38 2 0.02
39 3 0.03
40 3 0.03
41 2 0.02
42 2 0.02
43 15 0.16
44 1 0.01
45 10 0.11
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.47
Consensus pattern (34 bp):
TTATGTAAGTTATGATATGATAAATATTTAAGTA
Found at i:72444349 original size:79 final size:79
Alignment explanation
Indices: 72444257--72444413 Score: 269
Period size: 79 Copynumber: 2.0 Consensus size: 79
72444247 TGTAAGTTAA
*
72444257 GTAAGTTCTGTAAGTTATGTAAGATATGATATGATAAATATTTAAGTATTATGTAAGTTATGATA
1 GTAAGTTATGTAAGTTATGTAAGATATGATATGATAAATATTTAAGTATTATGTAAGTTATGATA
72444322 TGATATATATTTAT
66 TGATATATATTTAT
* * * *
72444336 GTAAGTTATGTAAGTTATGTAAGTTATGGTATGATATATATTTATGTATTATGTAAGTTATGATA
1 GTAAGTTATGTAAGTTATGTAAGATATGATATGATAAATATTTAAGTATTATGTAAGTTATGATA
72444401 TGATATATATTTA
66 TGATATATATTTA
72444414 ACATTAAGAT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (79 bp):
GTAAGTTATGTAAGTTATGTAAGATATGATATGATAAATATTTAAGTATTATGTAAGTTATGATA
TGATATATATTTAT
Found at i:72445712 original size:25 final size:25
Alignment explanation
Indices: 72445691--72445758 Score: 127
Period size: 25 Copynumber: 2.7 Consensus size: 25
72445681 TTGGAGAAGC
72445691 AGCAGAGGGATGCCGACGGAGATGT
1 AGCAGAGGGATGCCGACGGAGATGT
72445716 AGCAGAGGGATGCCGACGGAGATGT
1 AGCAGAGGGATGCCGACGGAGATGT
*
72445741 AGCAGAGGGCTGCCGACG
1 AGCAGAGGGATGCCGACG
72445759 ACAATGCGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.19, G:0.44, T:0.10
Consensus pattern (25 bp):
AGCAGAGGGATGCCGACGGAGATGT
Found at i:72445905 original size:24 final size:24
Alignment explanation
Indices: 72445873--72445918 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
72445863 ACCCAAGATG
*
72445873 TATGCATATTGATATATGTATATA
1 TATGCATATTGATATATATATATA
72445897 TATGCATATTGATATATATATA
1 TATGCATATTGATATATATATA
72445919 GACACACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.39, C:0.04, G:0.11, T:0.46
Consensus pattern (24 bp):
TATGCATATTGATATATATATATA
Found at i:72445911 original size:14 final size:14
Alignment explanation
Indices: 72445873--72445913 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
72445863 ACCCAAGATG
72445873 TATGCATATTGATA
1 TATGCATATTGATA
72445887 TATG--TA-T-ATA
1 TATGCATATTGATA
72445897 TATGCATATTGATA
1 TATGCATATTGATA
72445911 TAT
1 TAT
72445914 ATATAGACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
10 7 0.30
11 1 0.04
12 4 0.17
13 1 0.04
14 10 0.43
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.46
Consensus pattern (14 bp):
TATGCATATTGATA
Found at i:72447695 original size:15 final size:15
Alignment explanation
Indices: 72447662--72447704 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
72447652 AATTTTAATT
*
72447662 ATATTT-AATAATTA
1 ATATTTAAATATTTA
*
72447676 TTATTTAAATATTTA
1 ATATTTAAATATTTA
72447691 ATATTTAAAT-TTTA
1 ATATTTAAATATTTA
72447705 GGTAAAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATATTTAAATATTTA
Found at i:72447704 original size:22 final size:23
Alignment explanation
Indices: 72447651--72447704 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 23
72447641 TAATTTGAAA
72447651 AAATTTTAATTATATTTAATAATT
1 AAATTTTAA-TATATTTAATAATT
* *
72447675 -ATTATTTAA-ATATTTAATATTT
1 AAAT-TTTAATATATTTAATAATT
72447697 AAATTTTA
1 AAATTTTA
72447705 GGTAAAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
22 16 0.64
23 4 0.16
24 5 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
AAATTTTAATATATTTAATAATT
Found at i:72448620 original size:34 final size:37
Alignment explanation
Indices: 72448571--72448657 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 37
72448561 CAAAATAACA
*
72448571 AACCCCAAACCATAAACTT-A-ACATACTACCA-TTG
1 AACCCTAAACCATAAACTTAATACATACTACCATTTG
* *
72448605 AACCCTAAACTATAAACTTAAAATATATACTACCATTTG
1 AACCCTAAACCATAAACTT--AATACATACTACCATTTG
72448644 AACCCTAAACCATA
1 AACCCTAAACCATA
72448658 GGCCTTAAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
34 17 0.39
37 1 0.02
38 10 0.23
39 16 0.36
ACGTcount: A:0.46, C:0.28, G:0.02, T:0.24
Consensus pattern (37 bp):
AACCCTAAACCATAAACTTAATACATACTACCATTTG
Found at i:72449257 original size:41 final size:41
Alignment explanation
Indices: 72449181--72449377 Score: 177
Period size: 41 Copynumber: 4.8 Consensus size: 41
72449171 TTTTTCGGCG
* * *
72449181 TTTGGACAAAAAACGCTGCTATTGATCAG-TATTAGTGGCA
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCA
** * *
72449221 TTTGGACCAAAAACGCCGCTATTTCTTAGTTTTTAGTGGCGT
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGC-A
* * * * *
72449263 TTTAGA-TAAAAACGCAGCTATTGATCAATTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCA
* * *
72449303 TTT-TAGCTAAAAACGCCGCTATTGAACAGTTTTTAGTGGCA
1 TTTGGA-CCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCA
* * *
72449344 TTTAGG-CCAAAAACGCCGTTATTGTTAAGTTTTT
1 TTT-GGACCAAAAACGCCGCTATTGATCAGTTTTT
72449378 TGCGGCGTTA
Statistics
Matches: 125, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
39 1 0.01
40 27 0.22
41 92 0.74
42 5 0.04
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (41 bp):
TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCA
Found at i:72449931 original size:31 final size:31
Alignment explanation
Indices: 72449896--72449977 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
72449886 GTTTATTATG
*
72449896 AAAAATAATCTCAAAATAACAATATT-TAAAT
1 AAAAA-AATCTCAAAATAACAACATTATAAAT
* **
72449927 AAAAAAAT-TGAGATTTAACAACATTATAAAT
1 AAAAAAATCTCA-AAATAACAACATTATAAAT
*
72449958 AAAAAAAACTCAAAATAACA
1 AAAAAAATCTCAAAATAACA
72449978 TATCAAAATA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
29 2 0.05
30 13 0.32
31 23 0.57
32 2 0.05
ACGTcount: A:0.63, C:0.10, G:0.02, T:0.24
Consensus pattern (31 bp):
AAAAAAATCTCAAAATAACAACATTATAAAT
Found at i:72457434 original size:17 final size:17
Alignment explanation
Indices: 72457419--72457455 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
72457409 GTAAATAATT
72457419 AAATTAACTAATTAATCA
1 AAATTAA-TAATTAATCA
72457437 AAATTAATAA-TAAT-A
1 AAATTAATAATTAATCA
72457452 AAAT
1 AAAT
72457456 ATTATAAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 5 0.26
16 4 0.21
17 3 0.16
18 7 0.37
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (17 bp):
AAATTAATAATTAATCA
Found at i:72460168 original size:6 final size:6
Alignment explanation
Indices: 72460157--72460183 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
72460147 GCGGATACGG
72460157 CCCTTA CCCTTA CCCTTA CCCTTA CCC
1 CCCTTA CCCTTA CCCTTA CCCTTA CCC
72460184 GCCACCGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.56, G:0.00, T:0.30
Consensus pattern (6 bp):
CCCTTA
Found at i:72464722 original size:21 final size:21
Alignment explanation
Indices: 72464696--72464770 Score: 80
Period size: 21 Copynumber: 3.4 Consensus size: 21
72464686 TCAGATATTA
72464696 TTATTATCATTACTATTTTCG
1 TTATTATCATTACTATTTTCG
* *
72464717 TTATTATTCTTATTACTATTTACA
1 TTATTA-TC--ATTACTATTTTCG
*
72464741 TTATTATTATTACTA-TTTCTG
1 TTATTATCATTACTATTTTC-G
72464762 TTATTATCA
1 TTATTATCA
72464771 CTTTTACTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
20 3 0.07
21 21 0.48
22 2 0.05
23 1 0.02
24 17 0.39
ACGTcount: A:0.27, C:0.12, G:0.03, T:0.59
Consensus pattern (21 bp):
TTATTATCATTACTATTTTCG
Found at i:72464731 original size:24 final size:24
Alignment explanation
Indices: 72464693--72464768 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 24
72464683 CTATCAGATA
*
72464693 TTATTATTATCATTACTATTTTCG
1 TTATTATTATTATTACTATTTTCG
* *
72464717 TTATTATTCTTATTACTATTTAC-
1 TTATTATTATTATTACTATTTTCG
72464740 --ATTATTATTATTACTA-TTTCTG
1 TTATTATTATTATTACTATTTTC-G
72464762 TTATTAT
1 TTATTAT
72464769 CACTTTTACT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
20 3 0.07
21 15 0.35
24 25 0.58
ACGTcount: A:0.26, C:0.11, G:0.03, T:0.61
Consensus pattern (24 bp):
TTATTATTATTATTACTATTTTCG
Found at i:72464794 original size:26 final size:26
Alignment explanation
Indices: 72464763--72464813 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 26
72464753 CTATTTCTGT
72464763 TATTATCACTTTTACTA-ATTTTTTCC
1 TATTATCA-TTTTACTACATTTTTTCC
*
72464789 TATTATTATTTTACTATCATTTTTT
1 TATTATCATTTTACTA-CATTTTTT
72464814 TATACTAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 8 0.36
26 7 0.32
27 7 0.32
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.63
Consensus pattern (26 bp):
TATTATCATTTTACTACATTTTTTCC
Found at i:72466007 original size:2 final size:2
Alignment explanation
Indices: 72466000--72466085 Score: 165
Period size: 2 Copynumber: 43.5 Consensus size: 2
72465990 TTATCCAAAA
72466000 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
72466042 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
72466083 AG A
1 AG A
72466086 TTAAAAAAAA
Statistics
Matches: 83, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
1 1 0.01
2 82 0.99
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:72466208 original size:29 final size:27
Alignment explanation
Indices: 72466148--72466209 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 27
72466138 CACCATCTTG
*
72466148 GTACCTAAACTTTTTTTATCACAATTT
1 GTACCTAAACTTTTTTTATCACAAGTT
*
72466175 GTACCTAAACTACTTTTTT-TCCCAAGTT
1 GTACCTAAACT--TTTTTTATCACAAGTT
72466203 GATACCT
1 G-TACCT
72466210 CCGTTAGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 11 0.37
28 8 0.27
29 11 0.37
ACGTcount: A:0.27, C:0.23, G:0.06, T:0.44
Consensus pattern (27 bp):
GTACCTAAACTTTTTTTATCACAAGTT
Found at i:72466492 original size:18 final size:18
Alignment explanation
Indices: 72466469--72466508 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
72466459 ATTTCTCTCT
* *
72466469 CTTTTTTTTTCTTTTTTC
1 CTTTTTTTTTCCTTCTTC
72466487 CTTTTTTTTTCCTTCTTC
1 CTTTTTTTTTCCTTCTTC
72466505 CTTT
1 CTTT
72466509 ATAATGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (18 bp):
CTTTTTTTTTCCTTCTTC
Found at i:72474061 original size:18 final size:17
Alignment explanation
Indices: 72474038--72474071 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
72474028 TGCCTCTTTT
*
72474038 TTTTTTTTTAAATATTTA
1 TTTTTTTCT-AATATTTA
72474056 TTTTTTTCTAATATTT
1 TTTTTTTCTAATATTT
72474072 TACTATACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTTTCTAATATTTA
Found at i:72477484 original size:31 final size:30
Alignment explanation
Indices: 72477427--72477485 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
72477417 GAAATATTAT
*
72477427 ATTTTAGTCACTTGCGTTATCGTGTTGTAAC
1 ATTTTAGTCACTAGCGTTATC-TGTTGTAAC
72477458 ATTTTAGTCACTGAGTCGTTAT-TGTTGT
1 ATTTTAGTCACT-AG-CGTTATCTGTTGT
72477486 TAACGGTGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
31 18 0.72
32 1 0.04
33 6 0.24
ACGTcount: A:0.19, C:0.14, G:0.20, T:0.47
Consensus pattern (30 bp):
ATTTTAGTCACTAGCGTTATCTGTTGTAAC
Found at i:72478268 original size:33 final size:33
Alignment explanation
Indices: 72478231--72478298 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
72478221 GATTAATTCT
* *
72478231 ATATTTTATGTATCATTATATTAAATTATTTAA
1 ATATTTCATATATCATTATATTAAATTATTTAA
* *
72478264 ATATTTCATATCTCTTTATATTAAATTATTTAA
1 ATATTTCATATATCATTATATTAAATTATTTAA
72478297 AT
1 AT
72478299 TTTATTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.54
Consensus pattern (33 bp):
ATATTTCATATATCATTATATTAAATTATTTAA
Found at i:72478372 original size:25 final size:25
Alignment explanation
Indices: 72478340--72478404 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 25
72478330 TTTATATAGC
*
72478340 ATTAATTTTAAAAATAATTTATATTA
1 ATTATTTTTAAAAA-AATTTATATTA
* *
72478366 ATTATTTTTTATAAAATTTATATTA
1 ATTATTTTTAAAAAAATTTATATTA
72478391 ATTACTATTTTAAA
1 ATTA-T-TTTTAAA
72478405 TTTATATTCC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 15 0.47
26 12 0.38
27 5 0.16
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
ATTATTTTTAAAAAAATTTATATTA
Found at i:72478409 original size:23 final size:25
Alignment explanation
Indices: 72478355--72478412 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
72478345 TTTTAAAAAT
* *
72478355 AATTTATATTAATTATTTTTTATAA
1 AATTTATATTAATTACTATTTATAA
72478380 AATTTATATTAATTACTATTT-T-A
1 AATTTATATTAATTACTATTTATAA
72478403 AATTTATATT
1 AATTTATATT
72478413 CCATGCATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 11 0.35
24 1 0.03
25 19 0.61
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (25 bp):
AATTTATATTAATTACTATTTATAA
Found at i:72478834 original size:13 final size:13
Alignment explanation
Indices: 72478816--72478841 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72478806 ACTTTGCCCC
72478816 CTAAAATTATAAA
1 CTAAAATTATAAA
72478829 CTAAAATTATAAA
1 CTAAAATTATAAA
72478842 AATTTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
CTAAAATTATAAA
Found at i:72481652 original size:17 final size:16
Alignment explanation
Indices: 72481618--72481655 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
72481608 TATCATATGT
72481618 ATATAAATATAAAAAA
1 ATATAAATATAAAAAA
72481634 ATATAAA-ATAGAAATAA
1 ATATAAATATA-AAA-AA
72481651 ATATA
1 ATATA
72481656 TAAAGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 3 0.15
16 10 0.50
17 7 0.35
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
ATATAAATATAAAAAA
Found at i:72481665 original size:17 final size:18
Alignment explanation
Indices: 72481617--72481659 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
72481607 TTATCATATG
* *
72481617 TATATAAATATAAAAAAA
1 TATATAAATAGAAATAAA
72481635 TATA-AAATAGAAATAAA
1 TATATAAATAGAAATAAA
72481652 TATATAAA
1 TATATAAA
72481660 GAAAATTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (18 bp):
TATATAAATAGAAATAAA
Found at i:72481679 original size:29 final size:28
Alignment explanation
Indices: 72481617--72481679 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 28
72481607 TTATCATATG
72481617 TATAT-AAATATAAAAAAATATAAAATA
1 TATATAAAATATAAAAAAATATAAAATA
* * *
72481644 GAAATAAATATATAAAGAAAAT-TCAAATA
1 TATATAAA-ATATAAA-AAAATATAAAATA
72481673 TATATAA
1 TATATAA
72481680 TCTAGGGATA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
27 3 0.11
28 2 0.07
29 18 0.64
30 5 0.18
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.29
Consensus pattern (28 bp):
TATATAAAATATAAAAAAATATAAAATA
Found at i:72482053 original size:19 final size:21
Alignment explanation
Indices: 72482022--72482070 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
72482012 TTAAACTTTT
72482022 TATATTT-AAAAAA-TT-ATA
1 TATATTTAAAAAAATTTAATA
*
72482040 TATTTTTAAAAAAATTTAATA
1 TATATTTAAAAAAATTTAATA
72482061 TATATTTAAA
1 TATATTTAAA
72482071 TTTTTAGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 6 0.23
19 6 0.23
20 2 0.08
21 12 0.46
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TATATTTAAAAAAATTTAATA
Found at i:72499645 original size:1 final size:1
Alignment explanation
Indices: 72499639--72499664 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
72499629 AAGTTGAAAG
72499639 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
72499665 GGGGGAGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:72515504 original size:25 final size:25
Alignment explanation
Indices: 72515470--72515521 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
72515460 TCTAGTATAT
72515470 AGTTTCAGACATAATAAATCTATTC
1 AGTTTCAGACATAATAAATCTATTC
72515495 AGTTTCAGACATAATAAATCTATTC
1 AGTTTCAGACATAATAAATCTATTC
72515520 AG
1 AG
72515522 ACATATATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (25 bp):
AGTTTCAGACATAATAAATCTATTC
Found at i:72518555 original size:46 final size:46
Alignment explanation
Indices: 72518488--72518579 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
72518478 GCACCCATAA
72518488 AACACACAATAGATCGCATTTTATCATCTATATATAAGAAAGTTGT
1 AACACACAATAGATCGCATTTTATCATCTATATATAAGAAAGTTGT
*
72518534 AACACACAATAGATCGCATTTTGTCATCTATATATAAGAAAGTTGT
1 AACACACAATAGATCGCATTTTATCATCTATATATAAGAAAGTTGT
72518580 CAAACATATT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (46 bp):
AACACACAATAGATCGCATTTTATCATCTATATATAAGAAAGTTGT
Found at i:72520754 original size:3 final size:3
Alignment explanation
Indices: 72520746--72520791 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
72520736 CTTGTTTTTC
72520746 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
72520792 CTAGAGAGGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:72526288 original size:26 final size:26
Alignment explanation
Indices: 72526226--72526344 Score: 116
Period size: 26 Copynumber: 4.5 Consensus size: 26
72526216 TCTGATTTCG
* *
72526226 CACACTTAGTGCTCATAAATTAATTCA
1 CACACTTAGTGCT-ATAAATCAACTCA
*
72526253 CACACATAGTGCT-TAAATCCAACTCA
1 CACACTTAGTGCTATAAAT-CAACTCA
* * *
72526279 CACACTTAGTGCTCAGAAATTAATTCA
1 CACACTTAGTGCT-ATAAATCAACTCA
* *
72526306 CACACATAGTGCT-TAAATCCAACTCG
1 CACACTTAGTGCTATAAAT-CAACTCA
72526332 CACACTTAGTGCT
1 CACACTTAGTGCT
72526345 CAGTATCAAA
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
25 9 0.12
26 33 0.44
27 29 0.39
28 4 0.05
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (26 bp):
CACACTTAGTGCTATAAATCAACTCA
Found at i:72526290 original size:53 final size:53
Alignment explanation
Indices: 72526226--72526347 Score: 226
Period size: 53 Copynumber: 2.3 Consensus size: 53
72526216 TCTGATTTCG
*
72526226 CACACTTAGTGCTCATAAATTAATTCACACACATAGTGCTTAAATCCAACTCA
1 CACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCA
*
72526279 CACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCG
1 CACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCA
72526332 CACACTTAGTGCTCAG
1 CACACTTAGTGCTCAG
72526348 TATCAAATTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
53 67 1.00
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (53 bp):
CACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCA
Found at i:72526357 original size:53 final size:52
Alignment explanation
Indices: 72526223--72526370 Score: 208
Period size: 53 Copynumber: 2.8 Consensus size: 52
72526213 ATATCTGATT
72526223 TCGCACACTTAGTGCTCA-TAAATTAATTCACACACATAGTGCTTAAATCCAAC
1 TCGCACACTTAGTGCTCAGT--ATTAATTCACACACATAGTGCTTAAATCCAAC
* *
72526276 TCACACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAAC
1 TCGCACACTTAGTGCTCAG-TATTAATTCACACACATAGTGCTTAAATCCAAC
* * *
72526329 TCGCACACTTAGTGCTCAGTATCAAATTCGCACACTTAGTGC
1 TCGCACACTTAGTGCTCAGTAT-TAATTCACACACATAGTGC
72526371 ATCCCTCAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
52 2 0.02
53 83 0.98
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.28
Consensus pattern (52 bp):
TCGCACACTTAGTGCTCAGTATTAATTCACACACATAGTGCTTAAATCCAAC
Found at i:72526360 original size:27 final size:26
Alignment explanation
Indices: 72526226--72526370 Score: 123
Period size: 27 Copynumber: 5.5 Consensus size: 26
72526216 TCTGATTTCG
*
72526226 CACACTTAGTGCTCATAAAT-TAATTCA
1 CACACTTAGTGCTC--AAATCCAATTCA
* * *
72526253 CACACATAGTGCTTAAATCCAACTCA
1 CACACTTAGTGCTCAAATCCAATTCA
*
72526279 CACACTTAGTGCTCAGAAAT-TAATTCA
1 CACACTTAGTGCTC--AAATCCAATTCA
* * * *
72526306 CACACATAGTGCTTAAATCCAACTCG
1 CACACTTAGTGCTCAAATCCAATTCA
* * *
72526332 CACACTTAGTGCTCAGTATCAAATTCG
1 CACACTTAGTGCTCA-AATCCAATTCA
72526359 CACACTTAGTGC
1 CACACTTAGTGC
72526371 ATCCCTCAAA
Statistics
Matches: 95, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
25 8 0.08
26 34 0.36
27 49 0.52
28 4 0.04
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.28
Consensus pattern (26 bp):
CACACTTAGTGCTCAAATCCAATTCA
Found at i:72526625 original size:2 final size:2
Alignment explanation
Indices: 72526618--72526656 Score: 69
Period size: 2 Copynumber: 19.0 Consensus size: 2
72526608 TATGTCAAAC
72526618 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
72526657 TCAAGTATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:72528808 original size:35 final size:35
Alignment explanation
Indices: 72528764--72528831 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
72528754 AAAACTTAAA
72528764 TTTTAAATCCATTAAAACTCAAGAAATTGAGGTAT
1 TTTTAAATCCATTAAAACTCAAGAAATTGAGGTAT
*
72528799 TTTTAAATCCATTAAAACTTAAGAAATTGAGGT
1 TTTTAAATCCATTAAAACTCAAGAAATTGAGGT
72528832 TTCGAGTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (35 bp):
TTTTAAATCCATTAAAACTCAAGAAATTGAGGTAT
Found at i:72540318 original size:2 final size:2
Alignment explanation
Indices: 72540311--72540344 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
72540301 AAAAGCATAA
72540311 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72540345 TTAAGAACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72541120 original size:5 final size:5
Alignment explanation
Indices: 72541110--72541138 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
72541100 ATATTTTCAA
72541110 TTAAT TTAAT TTAAT TTAAT TT-AT TTAAT
1 TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT
72541139 ATTATATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTAAT
Found at i:72546405 original size:36 final size:36
Alignment explanation
Indices: 72546365--72546444 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
72546355 TGTTAACTGA
72546365 GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
1 GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
72546401 GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
1 GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
72546437 GACTAAAT
1 GAC-AAAT
72546445 TGTAAAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 39 0.91
37 4 0.09
ACGTcount: A:0.42, C:0.04, G:0.21, T:0.33
Consensus pattern (36 bp):
GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
Found at i:72551035 original size:27 final size:27
Alignment explanation
Indices: 72550969--72551022 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
72550959 AAAGTATGAG
*
72550969 AAAGAATGTATGAACTAAAATATGAAT
1 AAAGAATGTATGAACTAAAATATAAAT
72550996 AAAGAATGTATGAACTAAAATATAAAT
1 AAAGAATGTATGAACTAAAATATAAAT
72551023 TGAGTTGGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.57, C:0.04, G:0.13, T:0.26
Consensus pattern (27 bp):
AAAGAATGTATGAACTAAAATATAAAT
Found at i:72559730 original size:109 final size:109
Alignment explanation
Indices: 72559617--72559907 Score: 285
Period size: 107 Copynumber: 2.7 Consensus size: 109
72559607 TACAAAAATA
* * * *
72559617 TATAATACTAAAATTTACCATATCCATAATATGGATTGAAAAATAAATATTTCACATATAAAAAT
1 TATAATATTAAAATTTACCATACCCACAATATGGATTGAAAAATAAATATTTGACATATAAAAAT
* * ** *
72559682 TATATTTATTAAA-AATAATGATATTTGGAATAATTAATTGATTT
66 TATATATA-AAAATAATAATGATATTTAAAATAATTAATTAATTT
* * * *
72559726 TATAATATTATAATTTATCATACCCACAATGTAGG--TAAAAATATAATGATATTTGA-A-AT--
1 TATAATATTAAAATTTACCATACCCACAATAT-GGATTGAAAA-ATAA--ATATTTGACATATAA
* *
72559785 AATTTATATATAAAAATAATAATGATATTTAAAATAATTATTTAATTT
62 AAATTATATATAAAAATAATAATGATATTTAAAATAATTAATTAATTT
* * *
72559833 TATAATATTAAAA-ATACCATACCCACAATAT-AAGTGGAGAAAATAAATATTTGACATATAAAA
1 TATAATATTAAAATTTACCATACCCACAATATGGA-TTGA-AAAATAAATATTTGACATATAAAA
*
72559896 ATTATACATAAA
64 ATTATATATAAA
72559908 GAAAAATATA
Statistics
Matches: 145, Mismatches: 24, Indels: 26
0.74 0.12 0.13
Matches are distributed among these distances:
105 8 0.06
106 19 0.13
107 56 0.39
108 8 0.06
109 44 0.30
110 3 0.02
111 7 0.05
ACGTcount: A:0.50, C:0.07, G:0.06, T:0.37
Consensus pattern (109 bp):
TATAATATTAAAATTTACCATACCCACAATATGGATTGAAAAATAAATATTTGACATATAAAAAT
TATATATAAAAATAATAATGATATTTAAAATAATTAATTAATTT
Found at i:72559820 original size:18 final size:18
Alignment explanation
Indices: 72559763--72559822 Score: 63
Period size: 17 Copynumber: 3.4 Consensus size: 18
72559753 AATGTAGGTA
72559763 AAAAT-ATAATGATATTT
1 AAAATAATAATGATATTT
* * *
72559780 GAAATAAT--TTATATATA
1 AAAATAATAATGATAT-TT
72559797 AAAATAATAATGATATTT
1 AAAATAATAATGATATTT
72559815 AAAATAAT
1 AAAATAAT
72559823 TATTTAATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
16 5 0.15
17 12 0.36
18 11 0.33
19 5 0.15
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATAATAATGATATTT
Found at i:72559996 original size:26 final size:27
Alignment explanation
Indices: 72559967--72560038 Score: 67
Period size: 26 Copynumber: 2.7 Consensus size: 27
72559957 TAACATAATG
*
72559967 ATAAATATAAAAATATATTTTATTT-T
1 ATAAATAAAAAAATATATTTTATTTAT
* * * **
72559993 ATAATTAGATATTTATTATTTTATTTAT
1 ATAAATAAAAAAATA-TATTTTATTTAT
72560021 ATAAATAAAAAAAT-TATT
1 ATAAATAAAAAAATATATT
72560039 AATTAAAAAG
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
26 14 0.41
27 10 0.29
28 10 0.29
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (27 bp):
ATAAATAAAAAAATATATTTTATTTAT
Found at i:72569302 original size:26 final size:26
Alignment explanation
Indices: 72569266--72569401 Score: 245
Period size: 26 Copynumber: 5.2 Consensus size: 26
72569256 TGATACAAAT
72569266 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
72569292 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
72569318 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
72569344 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
72569370 TGATAATTGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
72569396 TGATAA
1 TGATAA
72569402 GAATTTCATG
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 108 1.00
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:72572246 original size:46 final size:46
Alignment explanation
Indices: 72572049--72572246 Score: 306
Period size: 46 Copynumber: 4.3 Consensus size: 46
72572039 TTGGGGTGCT
* * * *
72572049 ACATTTCATGTCACGTTGCCATGGTATCTTTCGACCATGGTCTTAT
1 ACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTAC
* * *
72572095 TCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTAT
1 ACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTAC
* *
72572141 ACATTTTATATCAGGTTACCATGGTATCTTTCAACCATGGTCTTAC
1 ACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTAC
*
72572187 ACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGGCTTAC
1 ACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTAC
72572233 ACATTTCATATCAG
1 ACATTTCATATCAG
72572247 AGAGCATACT
Statistics
Matches: 141, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 141 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (46 bp):
ACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTAC
Found at i:72578058 original size:10 final size:10
Alignment explanation
Indices: 72578043--72578071 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
72578033 TATTAAACTA
72578043 AAAAAAATAC
1 AAAAAAATAC
72578053 AAAAAAATA-
1 AAAAAAATAC
72578062 AAAAAAATAC
1 AAAAAAATAC
72578072 CTTTTTTCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.10
Consensus pattern (10 bp):
AAAAAAATAC
Found at i:72578677 original size:18 final size:20
Alignment explanation
Indices: 72578642--72578686 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 20
72578632 TTCTTTATTA
72578642 AATATTATTAGTATTATT-TC
1 AATATTATTAG-ATTATTATC
72578662 TAATATTATTA-A-TATTATC
1 -AATATTATTAGATTATTATC
72578681 AATATT
1 AATATT
72578687 TTTTTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 10 0.43
19 3 0.13
21 10 0.43
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (20 bp):
AATATTATTAGATTATTATC
Found at i:72578784 original size:3 final size:3
Alignment explanation
Indices: 72578771--72578933 Score: 56
Period size: 3 Copynumber: 53.0 Consensus size: 3
72578761 TTTAATTTCA
* * * *
72578771 TAT TGT TAT TAT TAG TAT TA- TAA TAT TA- TATT TAT TAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
* * *
72578815 TAG TAT ATAT T-T TAT TAT ATAT GTAT ATAT ATACT TTT TAT ATAG TAT
1 TAT TAT -TAT TAT TAT TAT -TAT -TAT -TAT -TA-T TAT TAT -TAT TAT
*
72578863 TAT CT-T T-T CTAT TAT TA- TATT TAT TAT TA- TATT TAT TAT T-T TCAC
1 TAT -TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT T-AT
* *
72578908 TAT TAT TAT T-T TTT TAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
72578934 ACGTATATAC
Statistics
Matches: 122, Mismatches: 20, Indels: 36
0.69 0.11 0.20
Matches are distributed among these distances:
2 16 0.13
3 78 0.64
4 27 0.22
5 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:72578809 original size:12 final size:12
Alignment explanation
Indices: 72578776--72578902 Score: 83
Period size: 12 Copynumber: 10.7 Consensus size: 12
72578766 TTTCATATTG
72578776 TTATTATTAGTAT
1 TTATTATTA-TAT
*
72578789 TATAATATTATAT
1 T-TATTATTATAT
72578802 TTATTATTA-AT
1 TTATTATTATAT
*
72578813 ATTAGTA-TATATT
1 -TTATTATTATA-T
72578826 TTATTA-TATAT
1 TTATTATTATAT
*
72578837 GTA-TATATATACT
1 TTATTAT-TATA-T
72578850 TT-TTA-TATA-
1 TTATTATTATAT
*
72578859 GTATTATCT-T-T
1 TTATTAT-TATAT
72578870 TCTATTATTATAT
1 T-TATTATTATAT
72578883 TTATTATTATAT
1 TTATTATTATAT
72578895 TTATTATT
1 TTATTATT
72578903 TTCACTATTA
Statistics
Matches: 91, Mismatches: 8, Indels: 31
0.70 0.06 0.24
Matches are distributed among these distances:
9 1 0.01
10 5 0.05
11 13 0.14
12 53 0.58
13 12 0.13
14 7 0.08
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (12 bp):
TTATTATTATAT
Found at i:72578843 original size:20 final size:21
Alignment explanation
Indices: 72578780--72578894 Score: 72
Period size: 21 Copynumber: 5.7 Consensus size: 21
72578770 ATATTGTTAT
*
72578780 TATTAGTATTATAATAT-TATA
1 TATTATTATTAT-ATATGTATA
72578801 T-TTATTATTA-ATATTAGTATA
1 TATTATTATTATATA-T-GTATA
72578822 TATT-TTATTATATATGTATA
1 TATTATTATTATATATGTATA
*
72578842 TATATACTTTTTATATA-GTAT-
1 TAT-TA-TTATTATATATGTATA
72578863 TATCT-TT-TCTAT-TAT-TATA
1 TAT-TATTAT-TATATATGTATA
72578882 T-TTATTATTATAT
1 TATTATTATTATAT
72578895 TTATTATTTT
Statistics
Matches: 77, Mismatches: 3, Indels: 30
0.70 0.03 0.27
Matches are distributed among these distances:
17 1 0.01
18 15 0.19
19 9 0.12
20 16 0.21
21 18 0.23
22 9 0.12
23 9 0.12
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (21 bp):
TATTATTATTATATATGTATA
Found at i:72579063 original size:29 final size:29
Alignment explanation
Indices: 72579026--72579105 Score: 78
Period size: 31 Copynumber: 2.7 Consensus size: 29
72579016 TCATTTCTTC
72579026 ATTAT-TTTTTTATTTATTATTTT-AAAT
1 ATTATATTTTTTATTTATTATTTTAAAAT
72579053 ACTCT-TATTTTATGTATATTATT-TTTTAAAAT
1 A-T-TATATTTT-T-TAT-TTATTATTTTAAAAT
*
72579085 ATTATATTTTTTATATATTAT
1 ATTATATTTTTTATTTATTAT
72579106 GTATATTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 16
0.72 0.02 0.27
Matches are distributed among these distances:
27 1 0.02
28 6 0.14
29 9 0.21
30 3 0.07
31 14 0.33
32 10 0.23
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (29 bp):
ATTATATTTTTTATTTATTATTTTAAAAT
Found at i:72579117 original size:21 final size:21
Alignment explanation
Indices: 72579062--72579161 Score: 75
Period size: 21 Copynumber: 4.7 Consensus size: 21
72579052 TACTCTTATT
*
72579062 TTATGTATATTATTTTT-TAAA
1 TTATGTATATT-TTTTTATATA
*
72579083 ATAT-TATA-TTTTTTATATA
1 TTATGTATATTTTTTTATATA
72579102 TTATGTATATTTTTTTATATCCTA
1 TTATGTATATTTTTTTATA---TA
*
72579126 TTAT-TCATA-TATTTTATTATA
1 TTATGT-ATATTTTTTTA-TATA
*
72579147 TTATGTATATATTTT
1 TTATGTATATTTTTT
72579162 AATAACTACA
Statistics
Matches: 63, Mismatches: 6, Indels: 19
0.72 0.07 0.22
Matches are distributed among these distances:
18 5 0.08
19 7 0.11
20 8 0.13
21 21 0.33
22 4 0.06
23 7 0.11
24 11 0.17
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (21 bp):
TTATGTATATTTTTTTATATA
Found at i:72579135 original size:24 final size:26
Alignment explanation
Indices: 72579100--72579147 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
72579090 ATTTTTTATA
72579100 TATTATGTATAT-TTTT-TTATATCC
1 TATTATGTATATATTTTATTATATCC
72579124 TATTAT-TCATATATTTTATTATAT
1 TATTATGT-ATATATTTTATTATAT
72579148 TATGTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.05
24 10 0.48
25 4 0.19
26 6 0.29
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.62
Consensus pattern (26 bp):
TATTATGTATATATTTTATTATATCC
Found at i:72579162 original size:21 final size:21
Alignment explanation
Indices: 72579057--72579270 Score: 87
Period size: 25 Copynumber: 9.4 Consensus size: 21
72579047 TTAAATACTC
*
72579057 TTATTTTATGTATATTATTTT-
1 TTATATTATGTATA-TATTTTA
* * *
72579078 TTAAAATAT-TATATTTTTTA
1 TTATATTATGTATATATTTTA
*
72579098 -TATATTATGTATATTTTTTTA
1 TTATATTATGTATA-TATTTTA
*
72579119 TATCCTATTAT-TCATATATTTTA
1 T-T-ATATTATGT-ATATATTTTA
72579142 TTATATTATGTATATATTTTAA
1 TTATATTATGTATATATTTT-A
* *
72579164 TAACTACATTATGTATGTATTTTTAA
1 T---TATATTATGTATATA-TTTT-A
* *
72579190 CTCTATATTACGTACATACTTTTGA
1 -T-TATATTATGTATATA-TTTT-A
72579215 -TATCATTATATGTATATATCTTTA
1 TTAT-A-T-TATGTATATAT-TTTA
* *
72579239 ATATATATAGGTATATATTTATA
1 TTATAT-TATGTATATATTT-TA
*
72579262 TAATATTAT
1 TTATATTAT
72579271 TAATAGGTAA
Statistics
Matches: 150, Mismatches: 23, Indels: 39
0.71 0.11 0.18
Matches are distributed among these distances:
19 11 0.07
20 8 0.05
21 28 0.19
22 11 0.07
23 28 0.19
24 13 0.09
25 44 0.29
26 6 0.04
27 1 0.01
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.56
Consensus pattern (21 bp):
TTATATTATGTATATATTTTA
Found at i:72579247 original size:23 final size:22
Alignment explanation
Indices: 72579083--72579258 Score: 92
Period size: 25 Copynumber: 7.6 Consensus size: 22
72579073 ATTTTTTAAA
*
72579083 ATAT-TATAT-TTTTTATATAT
1 ATATGTATATATTTTAATATAT
* * *
72579103 -TATGTATATTTTTTTATATCCT
1 ATATGTATATATTTTAATAT-AT
*
72579125 ATTAT-TCATATATTTTATTATAT
1 A-TATGT-ATATATTTTAATATAT
*
72579148 -TATGTATATATTTTAATAACTAC
1 ATATGTATATATTTTAAT-A-TAT
* *
72579171 ATTATGTATGTATTTTTAACTCTAT
1 A-TATGTATATA-TTTTAA-TATAT
* * *
72579196 ATTACGTACATACTTTTGATATCATT
1 A-TATGTATATA-TTTTAATAT-A-T
72579222 ATATGTATATATCTTTAATATAT
1 ATATGTATATAT-TTTAATATAT
*
72579245 ATAGGTATATATTT
1 ATATGTATATATTT
72579259 ATATAATATT
Statistics
Matches: 120, Mismatches: 20, Indels: 30
0.71 0.12 0.18
Matches are distributed among these distances:
19 3 0.03
20 5 0.04
21 23 0.19
22 5 0.04
23 16 0.13
24 18 0.15
25 41 0.34
26 8 0.07
27 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (22 bp):
ATATGTATATATTTTAATATAT
Found at i:72579349 original size:24 final size:23
Alignment explanation
Indices: 72579312--72579367 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
72579302 TATGTAAATG
* *
72579312 TTATGTAGATATTTTAATATCATA
1 TTATGTATACATTTTAATAT-ATA
**
72579336 TTATGTATACATTTTTTTATATA
1 TTATGTATACATTTTAATATATA
*
72579359 TTACGTATA
1 TTATGTATA
72579368 TTTATCTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 11 0.41
24 16 0.59
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (23 bp):
TTATGTATACATTTTAATATATA
Found at i:72579631 original size:20 final size:18
Alignment explanation
Indices: 72579580--72579621 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
72579570 AGTATACGTG
**
72579580 TATATAATATGCTTTTTA
1 TATATAATATTATTTTTA
72579598 TATATAATATTATTTTTA
1 TATATAATATTATTTTTA
72579616 TATATA
1 TATATA
72579622 TCATTATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (18 bp):
TATATAATATTATTTTTA
Found at i:72579887 original size:28 final size:28
Alignment explanation
Indices: 72579844--72579903 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 28
72579834 TATATTGTTA
72579844 TTTTTTATTATTATTA-TAAATACATTAT
1 TTTTTTATTATTATTAGT-AATACATTAT
*
72579872 TTTTCTTATTA-TATTAGTAGTACATTAT
1 TTTT-TTATTATTATTAGTAATACATTAT
72579900 TTTT
1 TTTT
72579904 ATTTTTCTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 22 0.76
29 7 0.24
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (28 bp):
TTTTTTATTATTATTAGTAATACATTAT
Found at i:72580838 original size:231 final size:220
Alignment explanation
Indices: 72580408--72580859 Score: 737
Period size: 231 Copynumber: 2.0 Consensus size: 220
72580398 AAAAAAAAAG
*
72580408 AGGATTTATTAGGTGTCCGATCACACCTAGGAAAAAAGGATCAGTGGCGACTCCCCTTTTTAATA
1 AGGATTTATTAGGTGTCCGATCACACCTAGGAAAAAAGGATCAGTGGCGACTACCCTTTTTAATA
72580473 AAATCGAAAGTCGGTTTTCAAATTTTCAATAAATCGCCTCAAAAGCGAAAATTTTACGTCGCTAC
66 AAATCGAAAGTCGGTTTTCAAATTTTCAATAAATCGCCTCAAAAGCGAAAATTTTACGTCGCTAC
* *
72580538 AGCTACAAAACAAATTTAGTAGATAAAAGTGTTTAGATTTTGATAATTTTGACTGAACCTTTTCG
131 AGCTACAAAACAAATTTAGTAGATAAAAGTGTTTAGATTTTGATAATTTTAACTAAACCTTTTCG
72580603 AATTAATTCTCCCATTCACCATATT
196 AATTAATTCTCCCATTCACCATATT
*
72580628 AGGATTTATTAGGTGTCCGATCACACCTAGGAAAAAATGATC-GATGGCGACTACCCTTTTTAAT
1 AGGATTTATTAGGTGTCCGATCACACCTAGGAAAAAAGGATCAG-TGGCGACTACCCTTTTTAAT
72580692 AAAATCGAAAGTCGGTTTTCAAATTTTCAATAAATTAC-CTCAATTAACGACCAAAAGCGAAAAT
65 AAAATCGAAAGTCGGTTTTCAAATTTTCAATAAA-T-CGC-C---T------CAAAAGCGAAAAT
72580756 TTTACGTCGCTACAGCTACAAAACAAATTTAGTAGATAAAAGTGTTTAGATTTTGATAATTTTAA
118 TTTACGTCGCTACAGCTACAAAACAAATTTAGTAGATAAAAGTGTTTAGATTTTGATAATTTTAA
72580821 CTAAACCTTTTCGAATTAATTCTCCCATTCACCATATT
183 CTAAACCTTTTCGAATTAATTCTCCCATTCACCATATT
72580859 A
1 A
72580860 CTCCAATCAT
Statistics
Matches: 215, Mismatches: 4, Indels: 15
0.92 0.02 0.06
Matches are distributed among these distances:
219 1 0.00
220 94 0.44
221 2 0.01
222 2 0.01
225 1 0.00
231 115 0.53
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (220 bp):
AGGATTTATTAGGTGTCCGATCACACCTAGGAAAAAAGGATCAGTGGCGACTACCCTTTTTAATA
AAATCGAAAGTCGGTTTTCAAATTTTCAATAAATCGCCTCAAAAGCGAAAATTTTACGTCGCTAC
AGCTACAAAACAAATTTAGTAGATAAAAGTGTTTAGATTTTGATAATTTTAACTAAACCTTTTCG
AATTAATTCTCCCATTCACCATATT
Found at i:72590455 original size:28 final size:28
Alignment explanation
Indices: 72590424--72590485 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
72590414 ACTAGGACGA
* *
72590424 TAAACACGAGGTAAGTCTG-CTGAGATAG
1 TAAACACGAGGTAAGTCCGCCAG-GATAG
*
72590452 TAAACTCGAGGTAAGTCCGCCAGGATAG
1 TAAACACGAGGTAAGTCCGCCAGGATAG
72590480 TAAACA
1 TAAACA
72590486 TAGGCAGCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 27 0.93
29 2 0.07
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.19
Consensus pattern (28 bp):
TAAACACGAGGTAAGTCCGCCAGGATAG
Found at i:72592478 original size:51 final size:51
Alignment explanation
Indices: 72592351--72592479 Score: 129
Period size: 51 Copynumber: 2.5 Consensus size: 51
72592341 TCTCCTCTAG
* * * *
72592351 CTTGCCTACAAGATGGA-TTTGCCTCCAAGGATATCATACTTTTTGGATTCA
1 CTTGCCTACAAGA-CGACTTTACCTCCAAGGATATCATACTTTCTAGATTCA
* * * * *
72592402 CTTACCTACAAAACAAC-TTAGCCTCCCAGGCTATCATACTTTCCTAG-TTCA
1 CTTGCCTACAAGACGACTTTA-CCTCCAAGGATATCATACTTT-CTAGATTCA
72592453 CTTGCCTACAAGACGACTTTACCTCCA
1 CTTGCCTACAAGACGACTTTACCTCCA
72592480 TGATTATTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
50 3 0.05
51 53 0.87
52 5 0.08
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.31
Consensus pattern (51 bp):
CTTGCCTACAAGACGACTTTACCTCCAAGGATATCATACTTTCTAGATTCA
Found at i:72596303 original size:7 final size:7
Alignment explanation
Indices: 72596291--72596322 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
72596281 TGTAGTCTTA
72596291 AATGGTC
1 AATGGTC
72596298 AATGGTC
1 AATGGTC
72596305 AATGGTC
1 AATGGTC
72596312 AATGGTC
1 AATGGTC
72596319 AATG
1 AATG
72596323 CTTCAGCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28
Consensus pattern (7 bp):
AATGGTC
Found at i:72601299 original size:33 final size:32
Alignment explanation
Indices: 72601233--72601382 Score: 129
Period size: 33 Copynumber: 4.5 Consensus size: 32
72601223 TTTCTGATGG
* * * *
72601233 ACATAACCTTTTCCAGTCGTACACTCGAGGTGT
1 ACAT-ACCTTTTCAAGTGGTACACTCAAAGTGT
*
72601266 ACATTCCCTTTTCAAGTGGTACACTCAAAGTGT
1 ACA-TACCTTTTCAAGTGGTACACTCAAAGTGT
** * * *
72601299 ATGTATTCTTTTCAAGTTGTACACGCAAAGTGT
1 ACATA-CCTTTTCAAGTGGTACACTCAAAGTGT
* * * *
72601332 ACATAGGCTTTTCAAATTGTACACACAAAGTGT
1 ACATA-CCTTTTCAAGTGGTACACTCAAAGTGT
72601365 ACATAACCTTTTCAAGTG
1 ACAT-ACCTTTTCAAGTG
72601383 TACCATTTAG
Statistics
Matches: 94, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
32 1 0.01
33 91 0.97
34 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.33
Consensus pattern (32 bp):
ACATACCTTTTCAAGTGGTACACTCAAAGTGT
Found at i:72601376 original size:66 final size:66
Alignment explanation
Indices: 72601233--72601385 Score: 164
Period size: 66 Copynumber: 2.3 Consensus size: 66
72601223 TTTCTGATGG
* * * * * * * *
72601233 ACATAACCTTTTCCAGTCGTACACTCGAGGTGTACATTCCCTTTTCAAGTGGTACACTCAAAGTG
1 ACATAACCTTTTCAAGTTGTACACGCAAAGTGTACATACCCTTTTCAAATGGTACACACAAAGTG
72601298 T
66 T
** ** ** *
72601299 ATGTATTCTTTTCAAGTTGTACACGCAAAGTGTACATAGGCTTTTCAAATTGTACACACAAAGTG
1 ACATAACCTTTTCAAGTTGTACACGCAAAGTGTACATACCCTTTTCAAATGGTACACACAAAGTG
72601364 T
66 T
72601365 ACATAACCTTTTCAAG-TGTAC
1 ACATAACCTTTTCAAGTTGTAC
72601386 CATTTAGGTA
Statistics
Matches: 68, Mismatches: 19, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
65 5 0.07
66 63 0.93
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (66 bp):
ACATAACCTTTTCAAGTTGTACACGCAAAGTGTACATACCCTTTTCAAATGGTACACACAAAGTG
T
Found at i:72602102 original size:20 final size:20
Alignment explanation
Indices: 72602060--72602102 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
72602050 TTATCTATCA
* * *
72602060 ATAACCTTTCATTTTCTATC
1 ATAACCTTTCAATTTATAGC
*
72602080 ATAATCTTTCAATTTATAGC
1 ATAACCTTTCAATTTATAGC
72602100 ATA
1 ATA
72602103 TTCATCCATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.47
Consensus pattern (20 bp):
ATAACCTTTCAATTTATAGC
Found at i:72604857 original size:19 final size:20
Alignment explanation
Indices: 72604835--72604874 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
72604825 TATTTTAGTC
*
72604835 ATTTAATTA-TTATTTTTTT
1 ATTTAATTATTTAATTTTTT
*
72604854 ATTTAGTTATTTAATTTTTT
1 ATTTAATTATTTAATTTTTT
72604874 A
1 A
72604875 AAATTAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (20 bp):
ATTTAATTATTTAATTTTTT
Found at i:72612515 original size:64 final size:64
Alignment explanation
Indices: 72612436--72612562 Score: 254
Period size: 64 Copynumber: 2.0 Consensus size: 64
72612426 AACAAGTGTT
72612436 GTTTTATGTGTTAAATTGATAGTTAATTAATTTTGACTTAAGTCAATGTCTATTATTGTTTGTA
1 GTTTTATGTGTTAAATTGATAGTTAATTAATTTTGACTTAAGTCAATGTCTATTATTGTTTGTA
72612500 GTTTTATGTGTTAAATTGATAGTTAATTAATTTTGACTTAAGTCAATGTCTATTATTGTTTGT
1 GTTTTATGTGTTAAATTGATAGTTAATTAATTTTGACTTAAGTCAATGTCTATTATTGTTTGT
72612563 TAATCCAATC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.28, C:0.05, G:0.16, T:0.52
Consensus pattern (64 bp):
GTTTTATGTGTTAAATTGATAGTTAATTAATTTTGACTTAAGTCAATGTCTATTATTGTTTGTA
Found at i:72614902 original size:25 final size:25
Alignment explanation
Indices: 72614864--72615012 Score: 106
Period size: 25 Copynumber: 5.9 Consensus size: 25
72614854 TGTATGAAAA
* *
72614864 AAAAAATATGTACATAATATAGTGT
1 AAAAAATATATACATAATATAGTAT
*
72614889 AAAAAATACATACATAATATA--AT
1 AAAAAATATATACATAATATAGTAT
* * *
72614912 -TAAAATATATACATAAGATAACATGTAGA
1 AAAAAATATATACAT-A-AT-ATA-GTA-T
* *
72614941 AAAAAAAATATAAATAATATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * *
72614966 TAAAGATATATACATAAAATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * *
72614991 AATATATATATACGTAATATAG
1 AAAAAATATATACATAATATAG
72615013 AATTTAGAAT
Statistics
Matches: 94, Mismatches: 22, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
22 12 0.13
23 2 0.02
24 2 0.02
25 58 0.62
26 3 0.03
27 2 0.02
28 3 0.03
29 1 0.01
30 11 0.12
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (25 bp):
AAAAAATATATACATAATATAGTAT
Found at i:72614974 original size:23 final size:23
Alignment explanation
Indices: 72614948--72615074 Score: 68
Period size: 25 Copynumber: 5.5 Consensus size: 23
72614938 AGAAAAAAAA
72614948 ATATAAATAATATAGTATTAAAG
1 ATATAAATAATATAGTATTAAAG
* *
72614971 ATATATACATAAAATAGTA-TAATAT
1 ATATA-A-ATAATATAGTATTAA-AG
* * *
72614996 ATATATACGTAATATAGAATT-TAG
1 ATATA-A-ATAATATAGTATTAAAG
** *
72615020 AATATACCTAATATA-T-TAAAAG
1 -ATATAAATAATATAGTATTAAAG
* *
72615042 ATATATATAATATAATATTAAA-
1 ATATAAATAATATAGTATTAAAG
72615064 ATAT-AATAATA
1 ATATAAATAATA
72615075 AAAAAAAAGA
Statistics
Matches: 80, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
21 19 0.24
22 7 0.09
23 16 0.20
24 5 0.06
25 32 0.40
26 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (23 bp):
ATATAAATAATATAGTATTAAAG
Found at i:72615011 original size:50 final size:46
Alignment explanation
Indices: 72614943--72615077 Score: 116
Period size: 48 Copynumber: 2.9 Consensus size: 46
72614933 CATGTAGAAA
* *
72614943 AAAAAATATAAATAATATAGTATTAAAGATATATACATAAAATAGTAT
1 AAAAGATATATATAATATAGTATTAAAGATATATACATAAAATA-T-T
* * * * * *
72614991 AATATATATATACGTAATATAGAATT-TAGA-ATATACCTAATATATT
1 AAAAGATATATA--TAATATAGTATTAAAGATATATACATAAAATATT
*
72615037 AAAAGATATATATAATATAATATTAAA-ATATAATA-ATAAAA
1 AAAAGATATATATAATATAGTATTAAAGATAT-ATACATAAAA
72615078 AAAAAGAGAG
Statistics
Matches: 68, Mismatches: 14, Indels: 13
0.72 0.15 0.14
Matches are distributed among these distances:
44 11 0.16
45 7 0.10
46 14 0.21
47 1 0.01
48 21 0.31
49 3 0.04
50 11 0.16
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (46 bp):
AAAAGATATATATAATATAGTATTAAAGATATATACATAAAATATT
Found at i:72615068 original size:13 final size:13
Alignment explanation
Indices: 72615032--72615077 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
72615022 TATACCTAAT
*
72615032 ATATTAAAAGAT-
1 ATATTAAAATATA
*
72615044 ATA-TATAATATA
1 ATATTAAAATATA
72615056 ATATTAAAATATA
1 ATATTAAAATATA
*
72615069 ATAATAAAA
1 ATATTAAAA
72615078 AAAAAGAGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
11 6 0.21
12 6 0.21
13 16 0.57
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (13 bp):
ATATTAAAATATA
Found at i:72615585 original size:30 final size:30
Alignment explanation
Indices: 72615549--72615616 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
72615539 AGGTACAAGT
72615549 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
* *
72615579 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
72615609 GGTGGTGG
1 GGTGGTGG
72615617 CAAGACTAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.18, C:0.06, G:0.51, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
Found at i:72615742 original size:21 final size:19
Alignment explanation
Indices: 72615712--72615755 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
72615702 TTGATGTAAA
72615712 TTGGGCTTTGGAGTTAAGATT
1 TTGGGCTTTGG-GTTAA-ATT
* *
72615733 TTGGGTTTTGGGTTTAATT
1 TTGGGCTTTGGGTTAAATT
72615752 TTGG
1 TTGG
72615756 TGGGTTAGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 7 0.33
20 4 0.19
21 10 0.48
ACGTcount: A:0.14, C:0.02, G:0.34, T:0.50
Consensus pattern (19 bp):
TTGGGCTTTGGGTTAAATT
Found at i:72616572 original size:91 final size:89
Alignment explanation
Indices: 72616291--72616828 Score: 474
Period size: 90 Copynumber: 6.0 Consensus size: 89
72616281 ACTAGGCATT
* ** ** *
72616291 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGC-CAAGGCTCAACTCACTTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGA-CTTGAGGCTCAACTCACCTCTCGCAATATGA
72616355 GTTGA--TTTTT-AAAACAAAATTTG
65 GTTGATTTTTTTGAAAACAAAA-TTG
* ** * ** * *
72616378 TAAAACAGATTTTGAAAATACCTCGGTATGTGAC-CGAGGCTCAACTCACCTCTCGTAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAG
**
72616442 TTGA--TTTTTGCAAAGATTAAATTG
66 TTGATTTTTTTG-AAA-ACAAAATTG
* * * *
72616466 AAAAAAAAATCAATTGAAAATACCTCGGCGTGTGATTTGAGGCTCAACTCACCT-TCGCAATATG
1 AAAAACAGA--AATTGAAAATACCTCAGCGTGTGACTTGAGGCTCAACTCACCTCTCGCAATATG
72616530 AGTTGATTTTTTTGACAAACATAAATTG
64 AGTTGATTTTTTTGA-AAACA-AAATTG
* * * *
72616558 AAAAAAAAGAAATTGAAAATATCTCAGCGTGT--CCTGAGGCTGAACTCACCTCTCGCAATATGA
1 -AAAAACAGAAATTGAAAATACCTCAGCGTGTGACTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
72616621 GTTGATTTTTTGGAAAAACAAATTTG
65 GTTGATTTTTTTG-AAAACAAAATTG
* * ** * * *
72616647 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCATCACTCGTAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
72616712 CTGATTTTTTTCAAACACAGAAATTG
66 TTGATTTTTTTGAAA-ACA-AAATTG
* * * * * *
72616738 AAGAACAGAAATGGAAAACACCTCAGC--GT--CTTGAGGTTTAACTTACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAG
*
72616799 CTGATTTTTTTGAAAGACAGAAATTG
66 TTGATTTTTTTGAAA-ACA-AAATTG
72616825 AAAA
1 AAAA
72616829 TAACTCAACG
Statistics
Matches: 371, Mismatches: 63, Indels: 34
0.79 0.13 0.07
Matches are distributed among these distances:
86 37 0.10
87 76 0.20
88 40 0.11
89 30 0.08
90 99 0.27
91 67 0.18
92 14 0.04
93 8 0.02
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (89 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAACAAAATTG
Found at i:72616624 original size:180 final size:174
Alignment explanation
Indices: 72616291--72618222 Score: 549
Period size: 148 Copynumber: 11.9 Consensus size: 174
72616281 ACTAGGCATT
* ** * *
72616291 AAAAACAGAAA-TTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGA
1 AAAAACA-AAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCT-TCGCAATATGA
* ** * * *
72616355 GTTGA--TTTTTAAAACAAAATTTGTAAAACAGATTTTGAAAATACCTCGGTATGTGACC-GAGG
64 GTTGATTTTTTTAAAACAAAA-TTGAAAAACAGAAATTGAAAATACCTCAG--CGTGTCCTGAGG
* **
72616417 CTCAACTCACCTCTCGTAATATGAGTTGATTTTTGCAAAGATTAAA-TTG
126 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGCAAA-AACAAATTTG
* * **
72616466 AAAAA-AAAATCAATTGAAAATACCTCGGCGTGTGATTTGAGGCTCAACTCACCTTCGCAATATG
1 AAAAACAAAAT---TTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCTTCGCAATATG
* *
72616530 AGTTGATTTTTTTGACAAACATAAATTGAAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCTGA
63 AGTTGATTTTTTT-A-AAACA-AAATTG-AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGA
* *
72616595 GGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACAAATTTG
124 GGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGCAAAAACAAATTTG
* *
72616647 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCATCAC-TCGTAATATGA
1 AAAAACAAAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCA-C-CTTCGCAATATGA
* * * * *
72616711 GCTGATTTTTTTCAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGC--GTCTTGAGG
64 GTTGATTTTTTT-AAA-ACA-AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGG
* * * *
72616774 TTTAACTTACCTCTCGCAATATGAGCTGA-TTTT-----------TTTG
126 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGCAAAAACAAATTTG
* * * * ** *
72616811 AAAGACAGAAA-TTGAAAATAACTCAACGTGT--CTTGAGGCTCAACTTACCTCTCGCAATATGA
1 AAAAACA-AAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCT-TCGCAATATGA
* * * * *
72616873 GTTGA----TTT---------TTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTC
64 GTTGATTTTTTTAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
*
72616923 AACTCACCTCTCGCAATATGAGCTGA-TTTT-----------TTT-
129 AACTCACCTCTCGCAATATGAGTTGATTTTTGCAAAAACAAATTTG
* * ** *
72616956 AAAAGACAGAAA-TTGAAAATACCTCAACGTGT--CTTGATGCTCAACTCACCTCTCGCAATATG
1 AAAA-ACA-AAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCT-TCGCAATATG
* * *
72617018 AGTTGA----TTT---------TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
63 AGTTGATTTTTTTAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCT
*
72617070 CAACTCACCTATCGCAATATGAGTTGA-TTTT-----------TTTG
128 CAACTCACCTCTCGCAATATGAGTTGATTTTTGCAAAAACAAATTTG
* * **
72617105 AAAAACAGAAA-TTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACA-AAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCT-TCGCAATATGA
* * * *
72617167 GTTGA----GTT---------TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
64 GTTGATTTTTTTAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
*
72617219 AACTCACCTCTCGCAATATGAGTTGATGTTTTTG-AAAAACAGAAATTG
129 AACTCACCTCTCGCAATATGAGTTGA--TTTTTGCAAAAACA-AATTTG
* * * * * * *
72617267 AAGAACAGAAA-TGGAAAACACCTCAGCGTCT---T-GAGGTTCAACTCACCTCTCACAATATGA
1 AAAAACA-AAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCT-TCGCAATATGA
* * * * *
72617327 GCT-A-ATTTTT---------TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTC
64 GTTGATTTTTTTAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
72617381 AACTCACCTCTCGCAATATGAGTTGATTTTTG-----AC-------
129 AACTCACCTCTCGCAATATGAGTTGATTTTTGCAAAAACAAATTTG
* * * * * ** **
72617415 -AAAA-AAAA-TTGAAATTACCTCAGCGTCTTGAGGTTCAA--CTCACCTCTCGCAAT-ATAAGC
1 AAAAACAAAATTTGAAAATACCTCAGCGT-GTGA-G-TCAAGGCTCAACTCAC-C-TTCGCAATA
** *** * * *
72617474 TGA-TTTTTTTTAAAAAAAG---------------AAATTGAAAATACCTCAACGTGTCTTGAGG
61 TGAGTTGATTTTTTTAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGG
72617523 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-----AC-------
126 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGCAAAAACAAATTTG
* * * **
72617560 --AAACAAAAATTGAAATTACCTCAGCGTGT--CTTGAGGCTCAACTCACCTATCGCAATATGAG
1 AAAAACAAAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCT-TCGCAATATGAG
* * *
72617621 TTGA--TTTTT---------TTGAAAAACAGAAATTGAAAATACCTCAACGTTTCTTGAGGCTCA
65 TTGATTTTTTTAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCA
* *
72617675 ACTCACCTCTTGCAATATGAGTTGAGTTTTG-----AC-------
130 ACTCACCTCTCGCAATATGAGTTGATTTTTGCAAAAACAAATTTG
* * ** * *
72617708 --AAACAAAAATTGAAATTACCTCAGCGTGT-CCT-GAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAAAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCT-TCGCAATATGAG
72617769 TTGATTTTTTTAGAAACATAAATT-AAAAA-AGAAATTGAAAA-ACCTCAGCGTGTCCTGAGGCT
65 TTGATTTTTTTA-AAACA-AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCT
** *
72617831 CAACTCA-CTCTCGCAATATGAGTT-ATTTGAAAAGCAAATTTTGTAAGGCAAAAATTG
128 CAACTCACCTCTCGCAATATGAGTTGATTT---TTGCAAA------AA--C-AAATTTG
*** *
72617888 AAAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCT-GAGGCTCAACTCACCTTCGCAATATGAG
1 AAAAACA-AAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCTTCGCAATATGAG
** ** * *
72617951 TTGATTTGAAAAGCAGAATTAAGGCAAAAATTGAAAAACAGAAATT-AAAATACCTCGGCGTGCC
65 TTGATTT---------TTTTAAAAC-AAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTC
*
72618015 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAGC--A-TT-
120 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGCAAAAACAAATTTG
*** * * *** * * *
72618065 AAATTGAAAA-TTAAAAATACCT-TGC---TGCCCCGAGGCTCAGCTCACCTCTTGCAATATGAG
1 AAAAACAAAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCT-TCGCAATATGAG
*
72618125 TTGA-TTTTTGAAAAGCATAAATTGAAAAA-ACGAAATTGAAAATACCTCAGCGTGTGACCTGAG
65 TTGATTTTTTTAAAA-CA-AAATTGAAAAACA-GAAATTGAAAATACCTCAGCGTGT--CCTGAG
*
72618188 GCCCAACTCACCTCTCGCAATATGAGTTGATTTTT
125 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
72618223 TTGAAAGAAA
Statistics
Matches: 1456, Mismatches: 161, Indels: 287
0.76 0.08 0.15
Matches are distributed among these distances:
141 2 0.00
142 4 0.00
143 13 0.01
144 5 0.00
145 93 0.06
146 180 0.12
147 3 0.00
148 298 0.20
149 7 0.00
150 18 0.01
151 9 0.01
152 1 0.00
156 5 0.00
157 16 0.01
158 28 0.02
159 14 0.01
160 40 0.03
161 4 0.00
162 121 0.08
164 33 0.02
165 20 0.01
166 15 0.01
168 40 0.03
170 1 0.00
172 4 0.00
173 20 0.01
174 16 0.01
175 11 0.01
176 30 0.02
177 69 0.05
178 7 0.00
179 65 0.04
180 75 0.05
181 41 0.03
182 48 0.03
183 21 0.01
184 1 0.00
190 10 0.01
191 14 0.01
192 33 0.02
193 17 0.01
194 4 0.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (174 bp):
AAAAACAAAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCTTCGCAATATGAGT
TGATTTTTTTAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTTGCAAAAACAAATTTG
Found at i:72616651 original size:14 final size:14
Alignment explanation
Indices: 72616633--72616664 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
72616623 TGATTTTTTG
72616633 GAAAAACA-AATTT
1 GAAAAACAGAATTT
72616646 GAAAAACAGAATTT
1 GAAAAACAGAATTT
72616660 GAAAA
1 GAAAA
72616665 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.19
Consensus pattern (14 bp):
GAAAAACAGAATTT
Found at i:72616884 original size:73 final size:73
Alignment explanation
Indices: 72616735--72617797 Score: 1207
Period size: 73 Copynumber: 14.3 Consensus size: 73
72616725 AACACAGAAA
* * * * * *
72616735 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTTAACTTACCTCTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
72616798 GCTGATTTTT
65 GTTGA-TTTT
* *
72616808 TTGAAAGACAGAAATTGAAAATAACTCAACGTGTCTTGAGGCTCAACTTACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
72616873 GTTGA-TTT
65 GTTGATTTT
* * * *
72616881 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
72616944 GCTGATTTTT
65 GTTGA-TTTT
* *
72616954 TTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGATGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
72617019 GTTGA-TTT
65 GTTGATTTT
* * * * *
72617027 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
72617092 GTTGATTTTT
65 GTTGA-TTTT
72617102 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
72617167 GTTGA-GTT
65 GTTGATTTT
* * * *
72617175 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
72617240 GTTGATGTTT
65 GTTGAT-TTT
* * ** * *
72617250 TTGAAAAACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCT
1 TTG-AAAACAGAAATT---G---A-AAAT----ACCTCAAC-GTGTCTTGAGGCTCAACTCACCT
* * *
72617315 CTCACAATATGAGCTAATTTTT
53 CTCGCAATATGAGTTGA-TTTT
72617337 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
72617402 GTTGA-TTT
65 GTTGATTTT
* * * * *
72617410 TTGACAAA-AAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATAA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
72617472 GCTGATTTTTT
65 GTTGA--TTTT
* *
72617483 TTAAAAAAAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
72617548 TTGA-TTT
66 TTGATTTT
* * * *
72617555 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
72617620 GTTGATTTTT
65 GTTGA-TTTT
* *
72617630 TTGAAAAACAGAAATTGAAAATACCTCAACGTTTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
72617695 GTTGA-GTT
65 GTTGATTTT
* * * * *
72617703 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
72617768 GTTGATTTT
65 GTTGATTTT
* * *
72617777 TTTAGAAACATAAATTAAAAA
1 TTGA-AAACAGAAATTGAAAA
72617798 AGAAATTGAA
Statistics
Matches: 847, Mismatches: 99, Indels: 87
0.82 0.10 0.08
Matches are distributed among these distances:
70 36 0.04
71 37 0.04
72 31 0.04
73 352 0.42
74 27 0.03
75 289 0.34
76 7 0.01
78 1 0.00
80 4 0.00
81 2 0.00
82 3 0.00
84 1 0.00
86 7 0.01
87 49 0.06
88 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:72617139 original size:148 final size:149
Alignment explanation
Indices: 72616757--72617858 Score: 1262
Period size: 148 Copynumber: 7.3 Consensus size: 149
72616747 AATGGAAAAC
* * * * *
72616757 ACCTCAGC--GTCTTGAGGTTTAACTTACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGA
1 ACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGA
* *
72616820 AATTGAAAATAACTCAACGTGTCTTGAGGCTCAACTTACCTCTCGCAATATGAGTTGA-TTTTTG
66 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
72616884 ACAAACAAAAATTGAAATT
131 ACAAACAAAAATTGAAATT
* *
72616903 ACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT-AAAAGACAG
1 ACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-ACAG
*
72616965 AAATTGAAAATACCTCAACGTGTCTTGATGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
65 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
72617029 GACAAACAAAAATTGAAATT
130 GACAAACAAAAATTGAAATT
* *
72617049 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGA
1 ACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGA
*
72617114 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-GTTTTG
66 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
72617178 ACAAACAAAAATTGAAATT
131 ACAAACAAAAATTGAAATT
* *
72617197 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATGTTTTTGAAAAACAGA
1 ACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGA
* * *
72617262 AATTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCACAATAT
66 AATT---G---A-AAAT-------ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
72617325 GAGCTAATTTTTTTGA-AAGACAGAAATTGAAAAT
117 GAGTTGA-TTTTTTGACAA-ACAAAAATTGAAATT
*
72617359 ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAAA-A-
1 ACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAAACAG
* * * * *
72617420 AAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATAAGCTGATTTTTT
65 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* * *
72617483 TTA-AAAAAAGAAATTGAAAAT
129 TGACAAACAA-AAATTGAAATT
* * *
72617504 ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAA
1 ACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGA
* * *
72617567 AATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTT
66 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
* * *
72617632 GAAAAACAGAAATTGAAAAT
130 GACAAACAAAAATTGAAATT
* * * * * *
72617652 ACCTCAACGTTTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA--GTTTTGACAAACAAA
1 ACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGA
* * * * *
72617715 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTT
66 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* *
72617780 AGAAACATAAATTAAAAAAGAAATT
131 ACAAACAAAAATT------GAAATT
*
72617805 GAAAAACCTCAGCGTGTCCTGAGGCTCAACTCA-CTCTCGCAATATGAGTT-ATTT
1 -----ACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
72617859 GAAAAGCAAA
Statistics
Matches: 859, Mismatches: 56, Indels: 70
0.87 0.06 0.07
Matches are distributed among these distances:
144 5 0.01
145 123 0.14
146 160 0.19
147 17 0.02
148 363 0.42
149 8 0.01
151 1 0.00
152 3 0.00
153 6 0.01
154 1 0.00
155 4 0.00
156 2 0.00
157 16 0.02
158 25 0.03
159 5 0.01
160 43 0.05
161 7 0.01
162 70 0.08
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (149 bp):
ACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGA
AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
ACAAACAAAAATTGAAATT
Found at i:72617273 original size:14 final size:14
Alignment explanation
Indices: 72617250--72617284 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
72617240 GTTGATGTTT
72617250 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
72617264 TTGAAGAACAGAAA
1 TTGAAAAACAGAAA
*
72617278 TGGAAAA
1 TTGAAAA
72617285 CACCTCAGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.06, G:0.20, T:0.14
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:72617681 original size:528 final size:528
Alignment explanation
Indices: 72616643--72617852 Score: 2018
Period size: 528 Copynumber: 2.3 Consensus size: 528
72616633 GAAAAACAAA
* * * * ** * * * *
72616643 TTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCATCACTCGTAATA
1 TTTGACAAACAAAAATTGAAATTACCTCAGCGTGT-CCT-GAGGCTCAACTCACCTCTCGCAATA
* *
72616708 TGAGCTGATTTTTTTCAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAG
64 TGAGTTGA-TTTTTTCAAAAACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAG
* * *
72616773 GTTTAACTTACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATAACTCAAC
128 GTTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAGAAATTGAAAATAACTCAAC
*
72616838 GTGTCTTGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
193 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
* *
72616903 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAA
258 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATAAGCTGATTTTTTTAAAAGAAAGAAA
*
72616968 TTGAAAATACCTCAACGTGTCTTGATGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
323 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
72617033 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
388 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
72617098 TTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
453 TTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
72617163 ATGAGTTGAGT
518 ATGAGTTGAGT
72617174 TTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
72617239 AGTTGATGTTTTTGAAAAACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGT
66 AGTTGAT-TTTTTCAAAAACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGT
* *
72617304 TCAACTCACCTCTCACAATATGAGCTAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGT
130 TCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAGAAATTGAAAATAACTCAACGT
72617369 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAA-AAAAATTGAAATTAC
195 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTAC
72617433 CTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATAAGCTGATTTTTTTTAAAA-AAAGAAAT
260 CTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATAAGCTGA-TTTTTTTAAAAGAAAGAAAT
72617497 TGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAA
324 TGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAA
*
72617562 ACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATT
389 ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATT
* *
72617627 TTTTTGAAAAACAGAAATTGAAAATACCTCAACGTTTCTTGAGGCTCAACTCACCTCTTGCAATA
454 TTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
72617692 TGAGTTGAGT
519 TGAGTTGAGT
*
72617702 TTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATG
1 TTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * * * * *
72617767 AGTTGATTTTTTTAGAAACATAAATT-AA-AAAAGAAATTGAAAA-ACCTCAGCGTGTCCTGAGG
66 AGTTGATTTTTTCAAAAACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGC--GTCTTGAGG
*
72617829 CTCAACTCA-CTCTCGCAATATGAG
129 TTCAACTCACCTCTCGCAATATGAG
72617853 TTATTTGAAA
Statistics
Matches: 641, Mismatches: 34, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
524 8 0.01
525 27 0.04
526 18 0.03
527 16 0.02
528 338 0.53
529 202 0.32
530 1 0.00
531 31 0.05
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (528 bp):
TTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTCAAAAACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTT
CAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAGAAATTGAAAATAACTCAACGTG
TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACC
TCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATAAGCTGATTTTTTTAAAAGAAAGAAATTG
AAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAAC
AAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTT
TTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGAGT
Found at i:72617988 original size:96 final size:98
Alignment explanation
Indices: 72617788--72618062 Score: 419
Period size: 96 Copynumber: 2.9 Consensus size: 98
72617778 TTAGAAACAT
72617788 AAATT-AAAAA-AGAAATTGAAAA-ACCTCAGCGTGT-CCTGAGGCTCAACTCA-CTCTCGCAAT
1 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCTGAGGCTCAACTCACCTCTCGCAAT
72617848 ATGAGTT-ATTTGAAAAGCAAATTTTGTAAGGCAA
66 ATGAGTTGATTTGAAAAGCAAA--TTGTAAGGCAA
72617882 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCTGAGGCTCAACTCACCT-TCGCAAT
1 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCTGAGGCTCAACTCACCTCTCGCAAT
72617946 ATGAGTTGATTTGAAAAGCAGAA-T-TAAGGCAA
66 ATGAGTTGATTTGAAAAGCA-AATTGTAAGGCAA
*
72617978 AAATTGAAAAACAGAAATT-AAAATACCTCGGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCTGAGGCTCAACTCACCTCTCGCAAT
72618041 ATGAGTTGATTTTTGAAAAGCA
66 ATGAGTTGA--TTTGAAAAGCA
72618063 TTAAATTGAA
Statistics
Matches: 170, Mismatches: 1, Indels: 17
0.90 0.01 0.09
Matches are distributed among these distances:
94 25 0.15
95 36 0.21
96 39 0.23
97 24 0.14
98 30 0.18
99 14 0.08
100 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (98 bp):
AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTGAAAAGCAAATTGTAAGGCAA
Found at i:72618208 original size:89 final size:88
Alignment explanation
Indices: 72617882--72618222 Score: 307
Period size: 79 Copynumber: 3.9 Consensus size: 88
72617872 TGTAAGGCAA
72617882 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGT-CCCTGAGGCTCAACTCACCT-TCGCAA
1 AAATTGAAAAAC-GAAATTGAAAATACCTCAGCGTGTGCCCTGAGGCTCAACTCACCTCTCGCAA
72617945 TATGAGTTGA--TTTGAAAAGCA-
65 TATGAGTTGATTTTTGAAAAGCAT
* * ** * ** ** *
72617966 GAATTAAGGCAAAAATTGAAAAACAGAAATTAAAATACCTCGGCGTGCCCTGAGGCTCAACTCAC
1 AAATT---G-AAAAA-CG--AAATTGAAAAT-ACCT-CAGC-GTGTGCCCTGAGGCTCAACTCAC
72618031 CTCTCGCAATATGAGTTGATTTTTGAAAAGCATT
56 CTCTCGCAATATGAGTTGATTTTTGAAAAGCA-T
* * * * *
72618065 AAATTG----A--AAATTAAAAATACCT-TGC---TGCCCCGAGGCTCAGCTCACCTCTTGCAAT
1 AAATTGAAAAACGAAATTGAAAATACCTCAGCGTGTGCCCTGAGGCTCAACTCACCTCTCGCAAT
72618120 ATGAGTTGATTTTTGAAAAGCAT
66 ATGAGTTGATTTTTGAAAAGCAT
* *
72618143 AAATTGAAAAAACGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAA
1 AAATTG-AAAAACGAAATTGAAAATACCTCAGCGTGTGCCCTGAGGCTCAACTCACCTCTCGCAA
72618208 TATGAGTTGATTTTT
65 TATGAGTTGATTTTT
72618223 TTGAAAGAAA
Statistics
Matches: 201, Mismatches: 29, Indels: 49
0.72 0.10 0.18
Matches are distributed among these distances:
78 7 0.03
79 49 0.24
83 2 0.01
84 4 0.02
85 16 0.08
86 9 0.04
87 1 0.00
88 6 0.03
89 39 0.19
90 8 0.04
91 3 0.01
92 2 0.01
93 3 0.01
94 20 0.10
95 16 0.08
96 1 0.00
97 11 0.05
99 4 0.02
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (88 bp):
AAATTGAAAAACGAAATTGAAAATACCTCAGCGTGTGCCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTGAAAAGCAT
Found at i:72630341 original size:22 final size:24
Alignment explanation
Indices: 72630283--72630350 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 24
72630273 TGTATGAAAA
* *
72630283 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
72630307 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
72630331 -AAAATATATACATAAGATAA
1 AAAAATATATACATAATATAA
72630351 CATGTAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 18 0.47
24 1 0.03
25 19 0.50
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:72630409 original size:25 final size:25
Alignment explanation
Indices: 72630373--72630505 Score: 102
Period size: 25 Copynumber: 5.6 Consensus size: 25
72630363 AAATATATAT
*
72630373 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
72630398 ATATATACATAAAATAGTA-TAATAT
1 ATATATACATAATATAGTATTAA-AG
* * *
72630423 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
72630447 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
72630469 AATATATATATAATATAATATTAAA-
1 -ATATATACATAATATAGTATTAAAG
72630494 A-ATATA-ATAATA
1 ATATATACATAATA
72630506 ACAAAAAAAG
Statistics
Matches: 86, Mismatches: 15, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
21 1 0.01
22 8 0.09
23 19 0.22
24 18 0.21
25 35 0.41
26 5 0.06
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:72630829 original size:16 final size:16
Alignment explanation
Indices: 72630791--72630829 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
72630781 CCAAAAAAAA
*
72630791 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
72630807 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
72630823 AATAACT
1 AAAAACT
72630830 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:72631029 original size:30 final size:30
Alignment explanation
Indices: 72630987--72631085 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
72630977 TAGGTACAAG
*
72630987 TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
72631017 AGGTGGTAGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
72631047 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
72631077 TGGTGGTGG
1 TGGTGGTGG
72631086 CAAAGGCTAG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.18, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:72634679 original size:25 final size:24
Alignment explanation
Indices: 72634624--72634681 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
72634614 ATATATATGT
*
72634624 ATATAATACTAAGTAATAATAATA
1 ATATAATACCAAGTAATAATAATA
*
72634648 ATAATAATACCATGCTAATAAATAA-A
1 AT-ATAATACCAAG-TAAT-AATAATA
72634674 ATATAATA
1 ATATAATA
72634682 ATGATAGCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 2 0.07
25 15 0.52
26 7 0.24
27 5 0.17
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (24 bp):
ATATAATACCAAGTAATAATAATA
Found at i:72634758 original size:18 final size:18
Alignment explanation
Indices: 72634727--72634767 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
72634717 TATTAAGACT
*
72634727 AAAA-TAAAATAATGAGA-
1 AAAAGTAAAAAAATG-GAC
72634744 AAAAGTAAAAAAATGGAC
1 AAAAGTAAAAAAATGGAC
72634762 AAAAGT
1 AAAAGT
72634768 GAATTAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.68, C:0.02, G:0.15, T:0.15
Consensus pattern (18 bp):
AAAAGTAAAAAAATGGAC
Found at i:72635862 original size:2 final size:2
Alignment explanation
Indices: 72635855--72635884 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
72635845 TTGTACACCC
72635855 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72635885 CAGCTAGAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72637947 original size:3 final size:3
Alignment explanation
Indices: 72637939--72637993 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
72637929 CTTTTTCTCT
72637939 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
72637987 TTA TTA T
1 TTA TTA T
72637994 CTCTCTTTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:72638126 original size:2 final size:2
Alignment explanation
Indices: 72638115--72638143 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
72638105 TATTTCTTTC
72638115 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72638144 TTAATGAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:72648659 original size:10 final size:11
Alignment explanation
Indices: 72648641--72648681 Score: 52
Period size: 10 Copynumber: 4.0 Consensus size: 11
72648631 TAAATTTTAA
72648641 AAGATAAATAC
1 AAGATAAATAC
72648652 AA-ATAAAT-C
1 AAGATAAATAC
*
72648661 AAGATAATTA-
1 AAGATAAATAC
72648671 AAGATAAATAC
1 AAGATAAATAC
72648682 CAAAATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
9 3 0.12
10 20 0.80
11 2 0.08
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (11 bp):
AAGATAAATAC
Found at i:72649316 original size:139 final size:139
Alignment explanation
Indices: 72649065--72649341 Score: 466
Period size: 139 Copynumber: 2.0 Consensus size: 139
72649055 TATACTATTT
* *
72649065 TCACTAATTATTCAAATAAATAATTTTATAAGTCAAATTACTATATATACGTATTTTTTTATAGT
1 TCACTAATTATTCAAATAAATAATTTTATAAGTCAAATTACTATATATACATATTTTATTATAGT
* * * *
72649130 TAACTCATAAATTTTTCAAATTAAGAAAATTCACCCTCAAATTGAATTTTTTAACACCAATAAAA
66 TAACTCATAAAATTTTCAAATTAAAAAAATTCACCCTCAAATCGAATTTTTTAACACCAACAAAA
72649195 ATCGAGTCA
131 ATCGAGTCA
72649204 TCACTAATTATTCAAATAAATAATTTTATAAGTCAAATTACTATATATACATATTTTATTATAGT
1 TCACTAATTATTCAAATAAATAATTTTATAAGTCAAATTACTATATATACATATTTTATTATAGT
* *
72649269 TAACTCATAAAAATTTT-AATTTAAAAAAATTCACCTTCAAATCGAATTTTTTAACACCAACAAA
66 TAACTCAT-AAAATTTTCAAATTAAAAAAATTCACCCTCAAATCGAATTTTTTAACACCAACAAA
72649333 AATCGAGTC
130 AATCGAGTC
72649342 GTTGCAGACA
Statistics
Matches: 129, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
139 122 0.95
140 7 0.05
ACGTcount: A:0.44, C:0.14, G:0.04, T:0.38
Consensus pattern (139 bp):
TCACTAATTATTCAAATAAATAATTTTATAAGTCAAATTACTATATATACATATTTTATTATAGT
TAACTCATAAAATTTTCAAATTAAAAAAATTCACCCTCAAATCGAATTTTTTAACACCAACAAAA
ATCGAGTCA
Found at i:72650453 original size:2 final size:2
Alignment explanation
Indices: 72650446--72650474 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
72650436 ATCTAAAATT
72650446 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
72650475 TTAACGGCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:72651348 original size:3 final size:3
Alignment explanation
Indices: 72651340--72651386 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
72651330 TCTAAAACTA
72651340 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
72651387 AAGAGATTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:72655760 original size:2 final size:2
Alignment explanation
Indices: 72655753--72655788 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
72655743 ATAATAATAC
* *
72655753 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
72655789 ATAGAAATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:72655849 original size:38 final size:37
Alignment explanation
Indices: 72655807--72655882 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 37
72655797 ACACACTACT
*
72655807 ATATAATAATAATAATAAATATAAA-AATACAAAAATAA
1 ATATAATAAAAATAATAAAT-TAAAGAATA-AAAAATAA
*
72655845 ATATAATAAAAATATTAAATTAAAGTAATAAAAAATAA
1 ATATAATAAAAATAATAAATTAAAG-AATAAAAAATAA
72655883 TACTATATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 4 0.12
38 26 0.76
39 4 0.12
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.28
Consensus pattern (37 bp):
ATATAATAAAAATAATAAATTAAAGAATAAAAAATAA
Found at i:72655934 original size:10 final size:10
Alignment explanation
Indices: 72655743--72655935 Score: 55
Period size: 10 Copynumber: 18.9 Consensus size: 10
72655733 AGTAAAGTAA
72655743 ATAATAATACT
1 ATAATAATA-T
72655754 ATATATAA-AT
1 ATA-ATAATAT
72655764 AT-ATATATAT
1 ATAATA-ATAT
*
72655774 ATATATATGTAT
1 ATA-ATA-ATAT
*
72655786 ATAATAGAAAT
1 ATAATA-ATAT
* *
72655797 ACACACTACTAT
1 ATA-A-TAATAT
72655809 ATAATAATA-
1 ATAATAATAT
72655818 ATAATAA-AT
1 ATAATAATAT
* *
72655827 ATAAAAATACA
1 ATAATAATA-T
*
72655838 AAAATAA-AT
1 ATAATAATAT
*
72655847 ATAATAA-AA
1 ATAATAATAT
*
72655856 ATATTAA-AT
1 ATAATAATAT
*
72655865 -TAAAGTAATAA
1 AT-AA-TAATAT
*
72655876 AAAATAATACT
1 ATAATAATA-T
72655887 ATATATAA-AT
1 ATA-ATAATAT
*
72655897 AT-ATATATAC
1 ATAATA-ATAT
*
72655907 ATAAAAATAT
1 ATAATAATAT
* *
72655917 ACACTAATAT
1 ATAATAATAT
72655927 ATAATAATA
1 ATAATAATA
72655936 GTAATAGCAA
Statistics
Matches: 132, Mismatches: 31, Indels: 39
0.65 0.15 0.19
Matches are distributed among these distances:
8 8 0.06
9 30 0.23
10 44 0.33
11 25 0.19
12 23 0.17
13 2 0.02
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (10 bp):
ATAATAATAT
Found at i:72655951 original size:133 final size:134
Alignment explanation
Indices: 72655709--72655960 Score: 289
Period size: 133 Copynumber: 1.9 Consensus size: 134
72655699 ATTGGGTTGG
* * * *
72655709 ATATAATGATAATAATAATATTAAAGTAAAGTAAATAATAATACTATATATAAATATATATATAT
1 ATATAATAAAAATAATAATATTAAAGTAAAGTAAAAAATAATACTATATATAAATATATATATAC
* * * * * *
72655774 ATATATATGTATATAATAGAAATACACACTACTATATAATAATAATAATAAATATAAAAATACAA
66 ATAAAAATATACATAATAGAAATACACACTAC-ATACAAAAATAATAA-AAATATAAAAATACAA
72655839 AAATAA
129 AAATAA
*
72655845 ATATAATAAAAATATTAA-ATTAAAGT-AA-TAAAAAATAATACTATATATAAATATATATATAC
1 ATATAATAAAAATAATAATATTAAAGTAAAGTAAAAAATAATACTATATATAAATATATATATAC
* * * *
72655907 ATAAAAATATACACTAATATATAATA-ATAGTA-ATAGCAAAAATAATGAAAATAT
66 ATAAAAATATACA-TAATAGA-AATACACACTACATA-CAAAAATAATAAAAATAT
72655961 GAGTAATATT
Statistics
Matches: 98, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
132 9 0.09
133 50 0.51
134 12 0.12
135 12 0.12
136 15 0.15
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (134 bp):
ATATAATAAAAATAATAATATTAAAGTAAAGTAAAAAATAATACTATATATAAATATATATATAC
ATAAAAATATACATAATAGAAATACACACTACATACAAAAATAATAAAAATATAAAAATACAAAA
ATAA
Found at i:72656155 original size:3 final size:3
Alignment explanation
Indices: 72656142--72656221 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
72656132 GAGGGTATAT
72656142 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
72656186 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
72656222 AAAAAATAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 9 0.15
3 42 0.68
4 9 0.15
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:72656166 original size:12 final size:12
Alignment explanation
Indices: 72656142--72656222 Score: 78
Period size: 12 Copynumber: 6.8 Consensus size: 12
72656132 GAGGGTATAT
72656142 ATAATAT-AATA
1 ATAATATAAATA
72656153 ATAATATAAATA
1 ATAATATAAATA
*
72656165 ATAATATATACATG
1 ATAATATA-A-ATA
*
72656179 AGAA-AT-AATA
1 ATAATATAAATA
72656189 ATAATATAAATA
1 ATAATATAAATA
* *
72656201 ATAGTAAAAATA
1 ATAATATAAATA
*
72656213 ATAAAATAAA
1 ATAATATAAA
72656223 AAAAATAAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
10 5 0.09
11 10 0.18
12 33 0.59
13 3 0.05
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:72656168 original size:18 final size:18
Alignment explanation
Indices: 72656138--72656217 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
72656128 TGGAGAGGGT
72656138 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
72656156 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
* *
72656175 CAT-GAGA-AATAATAATA
1 -ATATAAATAATAATAATA
* *
72656192 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
72656210 ATAATAAA
1 AT-ATAAA
72656218 ATAAAAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 2 0.04
17 8 0.16
18 28 0.56
19 10 0.20
20 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:72656218 original size:9 final size:9
Alignment explanation
Indices: 72656142--72656230 Score: 56
Period size: 9 Copynumber: 9.4 Consensus size: 9
72656132 GAGGGTATAT
72656142 ATAATATAATA
1 ATAATA-AA-A
*
72656153 ATAATATAA
1 ATAATAAAA
*
72656162 ATAATAATAT
1 ATAATAA-AA
*
72656172 ATACATGAGAA
1 ATA-AT-AAAA
*
72656183 ATAATAATA
1 ATAATAAAA
72656192 AT-ATAAATA
1 ATAATAAA-A
*
72656201 ATAGTAAAA
1 ATAATAAAA
72656210 ATAAT-AAA
1 ATAATAAAA
*
72656218 ATAAAAAAA
1 ATAATAAAA
72656227 ATAA
1 ATAA
72656231 AACAAAGCTC
Statistics
Matches: 61, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
8 11 0.18
9 26 0.43
10 11 0.18
11 12 0.20
12 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (9 bp):
ATAATAAAA
Found at i:72656760 original size:30 final size:30
Alignment explanation
Indices: 72656726--72656841 Score: 189
Period size: 30 Copynumber: 3.9 Consensus size: 30
72656716 ATTTGATGGT
72656726 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
*
72656756 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
* *
72656786 GTAGGTGCAAATGGGAGGCAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
72656816 GTAGGTGCAAGTGGGA-AGCAAGGTGG
1 GTAGGTGCAAGTGGGAGA-CAAGGTGG
72656842 CTAGGGTTTT
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
30 81 1.00
ACGTcount: A:0.26, C:0.07, G:0.51, T:0.16
Consensus pattern (30 bp):
GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
Found at i:72657592 original size:42 final size:43
Alignment explanation
Indices: 72657448--72657600 Score: 152
Period size: 43 Copynumber: 3.5 Consensus size: 43
72657438 TAAATTTAGC
72657448 CTGTTACCCTACTGTTTAAGGG-TTAAGGCTTGTCACCTTCGAT
1 CTGTTACCCTACTGTTT-AGGGTTTAAGGCTTGTCACCTTCGAT
* * * * * *
72657491 CTGTTTCCCTACTGCTTAGGGGGTTTAA-GATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGTTTA--GGGTTTAAGGCT-TGT-CACCTTCGA-T
72657537 CTGTTACCCTACTG-TTAGGGTTTAAGGCTTGTCACCTTCGAT
1 CTGTTACCCTACTGTTTAGGGTTTAAGGCTTGTCACCTTCGAT
* *
72657579 CTGTTTCCTTACTGTTTAGGGT
1 CTGTTACCCTACTGTTTAGGGT
72657601 CTGTAAATTT
Statistics
Matches: 88, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
42 18 0.20
43 34 0.39
44 7 0.08
45 11 0.12
46 18 0.20
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (43 bp):
CTGTTACCCTACTGTTTAGGGTTTAAGGCTTGTCACCTTCGAT
Found at i:72657668 original size:44 final size:42
Alignment explanation
Indices: 72657614--72658377 Score: 200
Period size: 44 Copynumber: 17.7 Consensus size: 42
72657604 TAAATTTAAC
*
72657614 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATTGTCTTTGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGC--ATTGTCTTTGAT
* ** * *
72657658 CTGTTTCCCTACTGCTTAGGGGGTTAA-G-ATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCAT-TGT-CTTTGA-T
* * * *
72657701 CTCTTACCCTACTGCTTAGGGGTTTAAGGCCCATCG-CATTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGG--CATTGTC-TTTGAT
* * ** * *
72657745 CTGTTTCCCTACTGCTTAGGAGGTTAA-G-ATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCAT-TGT-CTTTGA-T
* * *
72657788 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGG--CATTGTCTTTGAT
* * * *
72657832 CTGTTTCCCTACTGCTTA-GGGGTTAA-G-ATCTGTAAATTTAAC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCAT-TGT--CTTTGAT
* ** *
72657874 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGG--CATTGTCTTTGAT
* * *
72657918 CTGTTTCCCTACTGCTTAGGGGGTTAA-G-ATCTGTAAATTT-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCAT-TGT--CTTTGA-T
* * * ** * *
72657961 CTGCTACCCTACTGCTTAAGGGGTTAA-G-ATCTATAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCAT-TGT-CTTTGA-T
** * * * *
72658004 CTGTTACCCTACTATTTAGGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCATT-GTCTTTGAT
* * * *
72658048 CTGCT-CCACTACTGCTTAGGGAGATAA-G-ATCTG-CAATTTGGT
1 CTGTTACC-CTACTGCTTAGGGGGTTAAGGCAT-TGTC--TTTGAT
* * * * *
72658090 CTGTTACCCTACTGCTTAAGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCATT-GTCTTTGAT
* * ** *
72658134 CTGTTTCCCTACTGCATA-GGGGTTAA-G-ATCTGGAAATTT-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCAT-T-G-TCTTTGA-T
* * *
72658176 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCTTCGTCTTTGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGG-CATT-GTCTTTGAT
* * * * *
72658220 CTGCT-CCACTATTGCTTAGGGAGATAA-G-ATCTG-CAATTTGGT
1 CTGTTACC-CTACTGCTTAGGGGGTTAAGGCAT-TGTC--TTTGAT
* * * *
72658262 CTGTTACCCTACTGCTTAGGGGTTTAAGACCTTTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCATT-GTCTTTGAT
* *** * *
72658306 CTGCT-CCACTACTGCTTAGGGAAATAA-G-ATCTG-CAATTCGGT
1 CTGTTACC-CTACTGCTTAGGGGGTTAAGGCAT-TGTC--TTTGAT
*
72658348 CTGTTACCCTACTGCTTAGGGGTTTAAGGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGC
72658378 CCATCAACCT
Statistics
Matches: 512, Mismatches: 140, Indels: 136
0.65 0.18 0.17
Matches are distributed among these distances:
39 2 0.00
40 11 0.02
41 14 0.03
42 123 0.24
43 152 0.30
44 182 0.36
45 14 0.03
46 8 0.02
47 6 0.01
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (42 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGGCATTGTCTTTGAT
Found at i:72657746 original size:87 final size:86
Alignment explanation
Indices: 72657600--72657985 Score: 603
Period size: 87 Copynumber: 4.4 Consensus size: 86
72657590 CTGTTTAGGG
* ** * *
72657600 TCTGTAAATTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATTGTCTTTGATCTGTTTC
1 TCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCG-CTTCGATCTGTTTC
72657665 CCTACTGCTTAGGGGGTTAAGA
65 CCTACTGCTTAGGGGGTTAAGA
* *
72657687 TCTGTAAATTCAGCCTCTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTCGATCTGTTTC
1 TCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGC-TTCGATCTGTTTC
*
72657752 CCTACTGCTTAGGAGGTTAAGA
65 CCTACTGCTTAGGGGGTTAAGA
* *
72657774 TCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCGCCTTCGATCTGTTTC
1 TCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCG-CTTCGATCTGTTTC
72657839 CCTACTGCTTA-GGGGTTAAGA
65 CCTACTGCTTAGGGGGTTAAGA
* *
72657860 TCTGTAAATTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTC
1 TCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATC-GCTTCGATCTGTTTC
72657925 CCTACTGCTTAGGGGGTTAAGA
65 CCTACTGCTTAGGGGGTTAAGA
*
72657947 TCTGTAAATTTAGCCTGCTACCCTACTGCTTAAGGGGTT
1 TCTGTAAATTTAGCCTGTTACCCTACTGCTT-AGGGGTT
72657986 AAGATCTATA
Statistics
Matches: 277, Mismatches: 17, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
86 81 0.29
87 188 0.68
88 8 0.03
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (86 bp):
TCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCTTCGATCTGTTTCC
CTACTGCTTAGGGGGTTAAGA
Found at i:72657817 original size:253 final size:256
Alignment explanation
Indices: 72657365--72657985 Score: 896
Period size: 253 Copynumber: 2.4 Consensus size: 256
72657355 TTCAGCTTGG
* *
72657365 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTACTTAGGGTGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
* * * *** *
72657430 AAGATCTGTAAATTTAGCCTGTTACCCTACTGTTTAAGGG-TTAAGGCTTGTCACCTTCGATCTG
66 AAGATCTGTAAATTTAGCCTCTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACATTCGATCTG
* *
72657494 TTTCCCTACTGCTTAGGGGGTTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGTTAGGGTT
131 TTTCCCTACTGCTTAGGAGGTTTAAGATCTGTAAA-CTTCAGCCTGTTACCCTACTGTTAGGGGT
*** * *
72657559 TAAGGCTTGTCACCTTCGATCTGTTTCCTTACTGTTTA-GG-G-TCTGTAAATTTAACCTGT
195 TAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGAGATCTGTAAATTTAACCTGT
** * *
72657618 TACCCTACTGCTTAGGGGTTTAAGGCTTATTGTCTTTGATCTGTTTCCCTACTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
* *
72657683 AAGATCTGTAAATTCAGCCTCTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTCGATCTG
66 AAGATCTGTAAATTTAGCCTCTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACATTCGATCTG
72657748 TTTCCCTACTGCTTAGGAGG-TTAAGATCTGTAAA-TTCAGCCTGTTACCCTACTGCTTAGGGGG
131 TTTCCCTACTGCTTAGGAGGTTTAAGATCTGTAAACTTCAGCCTGTTACCCTACTG-TTA-GGGG
*
72657811 TTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAACCT
194 TTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTTA-GGG---AGATCTGTAAATTTAACCT
72657876 GT
255 GT
*
72657878 TACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
72657943 AAGATCTGTAAATTTAGCCTGC-TACCCTACTGCTTAAGGGGTT
66 AAGATCTGTAAATTTAGCCT-CTTACCCTACTGCTT-AGGGGTT
72657986 AAGATCTATA
Statistics
Matches: 327, Mismatches: 29, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
251 20 0.06
252 3 0.01
253 145 0.44
254 38 0.12
255 2 0.01
259 1 0.00
260 110 0.34
261 8 0.02
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (256 bp):
TACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
AAGATCTGTAAATTTAGCCTCTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACATTCGATCTG
TTTCCCTACTGCTTAGGAGGTTTAAGATCTGTAAACTTCAGCCTGTTACCCTACTGTTAGGGGTT
AAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGAGATCTGTAAATTTAACCTGT
Found at i:72657922 original size:130 final size:129
Alignment explanation
Indices: 72657365--72658113 Score: 503
Period size: 130 Copynumber: 5.8 Consensus size: 129
72657355 TTCAGCTTGG
* * * *
72657365 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTACTTAGGGTGTT
1 TACCCTACTGCTTAGGGGTTTAAGACCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
* * * * * ** * *
72657430 AAGATCTGTAAATTTAG-CCTGTTACCCTACTGTTTAAGGGTTAAGGCTTGTCACCTTCGATCTG
66 AAGATCTGTAAACTTCGACCTGTTACCCTACTGCTTAGGGGTTAAGTC-TGT-AAATTCAACCTG
72657494 T
129 T
* * ** * * *
72657495 TTCCCTACTGCTTAGGGGGTTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTG-TTA-GGG
1 TACCCTACTGCTTA-GGGGTTTAAGACCCAT-CATCTTCGA-TCTGTTTCCCTACTGCTTAGGGG
* * * * * * * * *
72657557 TTTAAG-GCTTGTCACCTTCGATCTGTTTCCTTACTGTTTA--GG----GTCTGTAAATTTAACC
63 GTTAAGATC-TGTAAACTTCGACCTGTTACCCTACTGCTTAGGGGTTAAGTCTGTAAATTCAACC
72657615 TGT
127 TGT
* ** ** *
72657618 TACCCTACTGCTTAGGGGTTTAAGGCTTATTGTCTTTGATCTGTTTCCCTACTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGACCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
* * ** ** * *
72657683 AAGATCTGTAAA-TTC-AGCCTCTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTCGATC
66 AAGATCTGTAAACTTCGA-CCTGTTACCCTACTGCTTAGGGG-TTAA-GTCTGT-AAATTCAACC
72657746 TGT
127 TGT
* * ** ** * *
72657749 TTCCCTACTGCTTAGGAGG-TTAAGATCTGT-AAATTC-AGCCTGTTACCCTACTGCTTAGGGGG
1 TACCCTACTGCTTAGG-GGTTTAAGACCCATCATCTTCGA-TCTGTTTCCCTACTGCTTAGGGGG
** ** *** * * *
72657811 TTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAACCT
64 TTAAGATCTGTAAACTTCGACCTGTTACCCTACTGCTTAGGGGTTAAG-TCTGTAAATTCAACCT
72657876 GT
128 GT
*
72657878 TACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGACCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
* * * * *
72657943 AAGATCTGTAAATTTAG-CCTGCTACCCTACTGCTTAAGGGGTTAAGATCTATAAATTCAGCCTG
66 AAGATCTGTAAACTTCGACCTGTTACCCTACTGCTT-AGGGGTTAAG-TCTGTAAATTCAACCTG
72658007 T
129 T
** * * * * *
72658008 TACCCTACTATTTAGGGGTTTAAGACCCTTCGTCTTCGATCTG-CTCCACTACTGCTTAGGGAGA
1 TACCCTACTGCTTAGGGGTTTAAGACCCATCATCTTCGATCTGTTTCC-CTACTGCTTAGGGGGT
* * ** *
72658072 TAAGATCTG-CAA-TTTGGTCTGTTACCCTACTGCTTAAGGGTT
65 TAAGATCTGTAAACTTCGACCTGTTACCCTACTGCTTAGGGGTT
72658114 TAAGACCCTT
Statistics
Matches: 470, Mismatches: 119, Indels: 62
0.72 0.18 0.10
Matches are distributed among these distances:
121 18 0.04
122 33 0.07
123 33 0.07
124 6 0.01
125 2 0.00
128 11 0.02
129 71 0.15
130 190 0.40
131 86 0.18
132 20 0.04
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (129 bp):
TACCCTACTGCTTAGGGGTTTAAGACCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
AAGATCTGTAAACTTCGACCTGTTACCCTACTGCTTAGGGGTTAAGTCTGTAAATTCAACCTGT
Found at i:72657924 original size:173 final size:174
Alignment explanation
Indices: 72657365--72657988 Score: 862
Period size: 173 Copynumber: 3.6 Consensus size: 174
72657355 TTCAGCTTGG
* *
72657365 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTACTTAGG-GTGT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGAG-GT
* * * *
72657429 TAAGATCTGTAAATTTAGCCTGTTACCCTACTGTTTA-AGGGTTAAGGCTTGTCACCTTCGATCT
65 TAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTATCGCCTTCGATCT
72657493 GTTTCCCTACTGCTTAGGGGGTTTAAGATCTGTAAATCTTCAGCCTGT
130 GTTTCCCTACTGCTTAGGGGG-TTAAGATCTGTAAAT-TT-AGCCTGT
*** * * *
72657541 TACCCTACTG-TTA-GGGTTTAAGGCTTGTCACCTTCGATCTGTTTCCTTACTG-TT--TAGG--
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGAGGTT
* * * * *
72657599 --G-TCTGTAAATTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATTGTCTTTGATCTG
66 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTATCGCCTTCGATCTG
* *
72657661 TTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTCT
131 TTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGT
*
72657705 TACCCTACTGCTTAGGGGTTTAAGGCCCATC-GCATTCGATCTGTTTCCCTACTGCTTAGGAGGT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCATC-TTCGATCTGTTTCCCTACTGCTTAGGAGGT
* **
72657769 TAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCGCCTTCGATCT
65 TAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTATCGCCTTCGATCT
*
72657834 GTTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAACCTGT
130 GTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGT
*
72657878 TACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGAGGTT
* *
72657943 AAGATCTGTAAATTTAGCCTGCTACCCTACTGCTTAAGGGGTTAAG
66 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAG
72657989 ATCTATAAAT
Statistics
Matches: 393, Mismatches: 41, Indels: 31
0.85 0.09 0.07
Matches are distributed among these distances:
164 16 0.04
165 5 0.01
166 77 0.20
167 44 0.11
169 3 0.01
171 1 0.00
172 1 0.00
173 132 0.34
174 101 0.26
175 3 0.01
176 10 0.03
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (174 bp):
TACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGAGGTT
AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTATCGCCTTCGATCTG
TTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGT
Found at i:72658031 original size:43 final size:42
Alignment explanation
Indices: 72657658--72658032 Score: 297
Period size: 43 Copynumber: 8.7 Consensus size: 42
72657648 TGTCTTTGAT
* *
72657658 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTATAAATTCAGC
* ** * ** *
72657701 CTCTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCATTC-GAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTAT-AAATTCAG-C
* *
72657745 CTGTTTCCCTACTGCTTAGGAGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGG-GGTTAAGATCTATAAATTCAGC
** * *** *
72657788 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCGCCTTC-GAT
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTAT-AAATTCAG-C
* * * *
72657832 CTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAAC
1 CTGTTACCCTACTGCTTAGGGGTTAAGATCTATAAATTCAGC
** * ** *
72657874 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTAT-AAATTCAG-C
* * *
72657918 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTATAAATTCAGC
*
72657961 CTGCTACCCTACTGCTTAAGGGGTTAAGATCTATAAATTCAGC
1 CTGTTACCCTACTGCTT-AGGGGTTAAGATCTATAAATTCAGC
**
72658004 CTGTTACCCTACTATTTAGGGGTTTAAGA
1 CTGTTACCCTACTGCTTAGGGG-TTAAGA
72658033 CCCTTCGTCT
Statistics
Matches: 252, Mismatches: 64, Indels: 32
0.72 0.18 0.09
Matches are distributed among these distances:
42 32 0.13
43 133 0.53
44 81 0.32
45 6 0.02
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (42 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGATCTATAAATTCAGC
Found at i:72658094 original size:86 final size:86
Alignment explanation
Indices: 72658004--72658427 Score: 586
Period size: 86 Copynumber: 4.9 Consensus size: 86
72657994 TAAATTCAGC
**
72658004 CTGTTACCCTACTATTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
72658069 AGATAAGATCTGCAATTTGGT
66 AGATAAGATCTGCAATTTGGT
* * *
72658090 CTGTTACCCTACTGCTTAAGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCC-CTACTGCATAGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTG-CTCCACTACTGCTTAGG
* * * *
72658154 G-GTTAAGATCTGGAAATTTAGC
65 GAGATAAGATCT-GCAATTTGGT
* * * *
72658176 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCTTCGTCTTTGATCTGCTCCACTATTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
72658241 AGATAAGATCTGCAATTTGGT
66 AGATAAGATCTGCAATTTGGT
*
72658262 CTGTTACCCTACTGCTTAGGGGTTTAAGACCTTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* *
72658327 AAATAAGATCTGCAATTCGGT
66 AGATAAGATCTGCAATTTGGT
* * ** * *
72658348 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCAACCTT-GATTTGTTTCC-CTACTGCTTAG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTC-GTCTTCGATCTG-CTCCACTACTGCTTAG
72658411 GGAGATAAGATCTGCAA
64 GGAGATAAGATCTGCAA
72658428 ATTCACTGAT
Statistics
Matches: 297, Mismatches: 35, Indels: 12
0.86 0.10 0.03
Matches are distributed among these distances:
85 12 0.04
86 267 0.90
87 18 0.06
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (86 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGCAATTTGGT
Found at i:72658157 original size:172 final size:169
Alignment explanation
Indices: 72657961--72658427 Score: 648
Period size: 172 Copynumber: 2.7 Consensus size: 169
72657951 TAAATTTAGC
* *
72657961 CTGCTACCCTACTGCTTAAGGGGTTAAGATCTATAAATTCAGCCTGTTACCCTACTATTTAGGGG
1 CTGCT-CCCTACTGCTT-AGGGGTTAAGATCT-GAAATTCAGCCTGTTACCCTACTACTTAGGGG
*
72658026 TTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTGGTC
63 TTTAAGGCCCTTCGTCTT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTGGTC
72658091 TGTTACCCTACTGCTTAAGGGTTTAAGACCCTTCGTCTTCGAT
127 TGTTACCCTACTGCTTAAGGGTTTAAGACCCTTCGTCTTCGAT
* * *
72658134 CTGTTTCCCTACTGCATAGGGGTTAAGATCTGGAAATTTAGCCTGTTACCCTACTACTTAGGGGT
1 CTG-CTCCCTACTGCTTAGGGGTTAAGATCT-GAAATTCAGCCTGTTACCCTACTACTTAGGGGT
*
72658199 TTAAGGCCCTTCGTCTTTGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGCAATTTGGTCT
64 TTAAGGCCCTTCGTC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCT
* *
72658264 GTTACCCTACTGCTTAGGGGTTTAAGACCTTTCGTCTTCGAT
128 GTTACCCTACTGCTTAAGGGTTTAAGACCCTTCGTCTTCGAT
** * * * *
72658306 CTGCTCCACTACTGCTTAGGGAAATAAGATCTGCAATTCGGTCTGTTACCCTACTGCTTAGGGGT
1 CTGCTCC-CTACTGCTTAGGG-GTTAAGATCTGAAATTCAGCCTGTTACCCTACTACTTAGGGGT
* ** * *
72658371 TTAAGGCCCATCAACCTTGATTTGTTTCC-CTACTGCTTAGGGAGATAAGATCTGCAA
64 TTAAGGCCCTTC-GTCTTGATCTG-CTCCACTACTGCTTAGGGAGATAAGATCTGCAA
72658428 ATTCACTGAT
Statistics
Matches: 263, Mismatches: 25, Indels: 13
0.87 0.08 0.04
Matches are distributed among these distances:
171 3 0.01
172 232 0.88
173 27 0.10
174 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (169 bp):
CTGCTCCCTACTGCTTAGGGGTTAAGATCTGAAATTCAGCCTGTTACCCTACTACTTAGGGGTTT
AAGGCCCTTCGTCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCTGTT
ACCCTACTGCTTAAGGGTTTAAGACCCTTCGTCTTCGAT
Found at i:72666359 original size:30 final size:30
Alignment explanation
Indices: 72666323--72666437 Score: 212
Period size: 30 Copynumber: 3.8 Consensus size: 30
72666313 AAAACCCTAG
*
72666323 CCACCTTGCCTCCCACTTGCACCTACTCTA
1 CCACCTTGCCTCCCACTTGCACCTACTCCA
72666353 CCACCTTGCCTCCCACTTGCACCTACTCCA
1 CCACCTTGCCTCCCACTTGCACCTACTCCA
72666383 CCACCTTGCCTCCCACTTGCACCTACTCCA
1 CCACCTTGCCTCCCACTTGCACCTACTCCA
*
72666413 CCACCTTGTCTCCCACTTGCACCTA
1 CCACCTTGCCTCCCACTTGCACCTA
72666438 TACCATCAAA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.17, C:0.51, G:0.07, T:0.25
Consensus pattern (30 bp):
CCACCTTGCCTCCCACTTGCACCTACTCCA
Found at i:72666375 original size:18 final size:18
Alignment explanation
Indices: 72666354--72666406 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
72666344 CCTACTCTAC
72666354 CACCTTGCCTCCCACTTG
1 CACCTTGCCTCCCACTTG
*
72666372 CACC-T-ACT-CCAC---
1 CACCTTGCCTCCCACTTG
72666384 CACCTTGCCTCCCACTTG
1 CACCTTGCCTCCCACTTG
72666402 CACCT
1 CACCT
72666407 ACTCCACCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
12 4 0.15
13 1 0.04
14 2 0.07
15 8 0.30
16 2 0.07
17 1 0.04
18 9 0.33
ACGTcount: A:0.15, C:0.53, G:0.08, T:0.25
Consensus pattern (18 bp):
CACCTTGCCTCCCACTTG
Found at i:72666955 original size:3 final size:3
Alignment explanation
Indices: 72666944--72667157 Score: 74
Period size: 3 Copynumber: 69.3 Consensus size: 3
72666934 TTTATTTTTT
* *
72666944 TTA TT- TTA TTA TTT TTA CTA TTA TTA TTA TTA TTA TTA TT- TCTCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-T-A
* *
72666989 TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA -TA TATA CCCTC
1 T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA --TTA
* * * * *
72667034 TCCA -TA TTTA TT- TATA TTA TTA CTA TCA TTA TTG TTA CTT- CTA TTA
1 T-TA TTA -TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
* * *
72667080 TT- TT- TTA TT- TCTGA CTA CTA TTA TTA TATA TATA TGTA TTA TTG
1 TTA TTA TTA TTA T-T-A TTA TTA TTA TTA T-TA T-TA T-TA TTA TTA
72667124 TT- TGTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
72667158 CACCCCTATT
Statistics
Matches: 162, Mismatches: 24, Indels: 50
0.69 0.10 0.21
Matches are distributed among these distances:
2 17 0.10
3 117 0.72
4 25 0.15
5 3 0.02
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Done.