Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 254 of 292
Found at i:73654407 original size:23 final size:23
Alignment explanation
Indices: 73654381--73654448 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 23
73654371 GTGATATTTA
*
73654381 ATAATAAATTTAAAATATAATAT
1 ATAATAAATATAAAATATAATAT
*
73654404 ATAATAAAAAATATATAATAATAATAT
1 ATAAT---AAATATAAAAT-ATAATAT
73654431 ATAA-AAATATAAAATATA
1 ATAATAAATATAAAATATA
73654449 TTGGTTTAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
22 3 0.08
23 15 0.39
26 9 0.24
27 11 0.29
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (23 bp):
ATAATAAATATAAAATATAATAT
Found at i:73654424 original size:17 final size:19
Alignment explanation
Indices: 73654392--73654427 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
73654382 TAATAAATTT
73654392 AAAATATAATATATAATAA
1 AAAATATAATATATAATAA
73654411 AAAATAT-ATA-ATAATAA
1 AAAATATAATATATAATAA
73654428 TATATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 3 0.18
19 7 0.41
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAATATAATATATAATAA
Found at i:73654961 original size:18 final size:17
Alignment explanation
Indices: 73654925--73655057 Score: 176
Period size: 18 Copynumber: 7.5 Consensus size: 17
73654915 AATCATATCT
73654925 TCTAAGATTGTATATCATA
1 TCTAAGATTG-A-ATCATA
73654944 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
73654962 TTTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
73654979 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
73654997 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
73655014 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
73655032 TTTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
73655049 TCTAAGATT
1 TCTAAGATT
73655058 ACATATCATT
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
17 45 0.44
18 46 0.45
19 11 0.11
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (17 bp):
TCTAAGATTGAATCATA
Found at i:73654982 original size:35 final size:35
Alignment explanation
Indices: 73654927--73655066 Score: 235
Period size: 35 Copynumber: 3.9 Consensus size: 35
73654917 TCATATCTTC
73654927 TAAGATTGTATATCATATCTAAGATTGCAATCATATT
1 TAAGATTG--TATCATATCTAAGATTGCAATCATATT
*
73654964 TAAGATTGTATCATATCTAAGATTGCAATCATATC
1 TAAGATTGTATCATATCTAAGATTGCAATCATATT
73654999 TAAGATTGTATCATATCTAAGATTGCAATCATATT
1 TAAGATTGTATCATATCTAAGATTGCAATCATATT
*
73655034 TAAGATTGTATCATATCTAAGATTACATATCAT
1 TAAGATTGTATCATATCTAAGATTGCA-ATCAT
73655067 TGAAGATTAT
Statistics
Matches: 99, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
35 86 0.87
36 5 0.05
37 8 0.08
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (35 bp):
TAAGATTGTATCATATCTAAGATTGCAATCATATT
Found at i:73655299 original size:20 final size:21
Alignment explanation
Indices: 73655247--73655305 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
73655237 GAATGTCTAC
*
73655247 AACTACTACTATTATTCTTATT
1 AACTA-TACTATTATTATTATT
*
73655269 AAC-ATATTATTATTATT-TT
1 AACTATACTATTATTATTATT
*
73655288 TACTATACTATTATTATT
1 AACTATACTATTATTATT
73655306 CCCCTTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 4 0.12
20 24 0.75
21 1 0.03
22 3 0.09
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.54
Consensus pattern (21 bp):
AACTATACTATTATTATTATT
Found at i:73655365 original size:3 final size:3
Alignment explanation
Indices: 73655352--73655547 Score: 173
Period size: 3 Copynumber: 64.7 Consensus size: 3
73655342 TATATTAATG
*
73655352 TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** * *
73655400 TAT TAT GTAT ATAT TAG TAT T-T ATAT TAT CGT TAT TAT TAC TAT TGT
1 TAT TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
73655447 TAA TAT TTT TAT TAC TAT TAT TTT TAT TCCT T-T TATT TAT TAT CAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
** * *
73655493 TA- TAT TAT TAT TAT TGC TAT TGT TAC TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
73655540 TAT TAT TA
1 TAT TAT TA
73655548 AAAAATTTTA
Statistics
Matches: 153, Mismatches: 33, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
2 5 0.03
3 136 0.89
4 12 0.08
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:73655652 original size:17 final size:17
Alignment explanation
Indices: 73655619--73655652 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
73655609 TTTTATTATC
*
73655619 ATTATTACTATCGTATT
1 ATTATTACTATCATATT
*
73655636 ATTATTACTATTATATT
1 ATTATTACTATCATATT
73655653 TTCATCTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.56
Consensus pattern (17 bp):
ATTATTACTATCATATT
Found at i:73655715 original size:14 final size:14
Alignment explanation
Indices: 73655642--73655729 Score: 59
Period size: 14 Copynumber: 5.7 Consensus size: 14
73655632 TATTATTATT
73655642 ACTATTATATTTTC
1 ACTATTATATTTTC
*
73655656 ATCTATATAGATTTTC
1 A-CTAT-TATATTTTC
* *
73655672 TTAGTACTTATATTTCTT
1 --ACTA-TTATATTT-TC
73655690 ATCTATTTATATTTTC
1 A-CTA-TTATATTTTC
*
73655706 ACTATTATATTTTA
1 ACTATTATATTTTC
*
73655720 AGTATTATAT
1 ACTATTATAT
73655730 CTATATTTAT
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
14 19 0.33
15 7 0.12
16 11 0.19
17 18 0.31
18 3 0.05
ACGTcount: A:0.30, C:0.10, G:0.03, T:0.57
Consensus pattern (14 bp):
ACTATTATATTTTC
Found at i:73663602 original size:4 final size:4
Alignment explanation
Indices: 73663589--73663625 Score: 56
Period size: 4 Copynumber: 9.0 Consensus size: 4
73663579 TTTATTTATC
*
73663589 AATT AGTT AATT AATT AATT AATT AATTT AATT AATT
1 AATT AATT AATT AATT AATT AATT AA-TT AATT AATT
73663626 TCCTAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 26 0.87
5 4 0.13
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (4 bp):
AATT
Found at i:73667472 original size:29 final size:29
Alignment explanation
Indices: 73667430--73667490 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
73667420 TGTAATATTG
**
73667430 TTAGTCCAAGAAAGTAGTCGATAAAACAT
1 TTAGTCCAAGAAAGTAGAAGATAAAACAT
*
73667459 TTAGTCCAAGAAAGTAGAATATAAAACAT
1 TTAGTCCAAGAAAGTAGAAGATAAAACAT
73667488 TTA
1 TTA
73667491 CTAATAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.11, G:0.15, T:0.26
Consensus pattern (29 bp):
TTAGTCCAAGAAAGTAGAAGATAAAACAT
Found at i:73667864 original size:2 final size:2
Alignment explanation
Indices: 73667852--73667881 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
73667842 TAAAAAGTGT
*
73667852 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
73667882 AAATTAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:73669685 original size:23 final size:23
Alignment explanation
Indices: 73669605--73669700 Score: 63
Period size: 23 Copynumber: 4.2 Consensus size: 23
73669595 TTTTAAATTA
** *
73669605 TTTTAATATTTAAATAATATATT
1 TTTTAATATTTTTATAATATAAT
* * *
73669628 TTTTATTATGACTTTATAAAATAA-
1 TTTTAATAT--TTTTATAATATAAT
* *
73669652 TATAAATTATTTTTATAATATAAT
1 TTTTAA-TATTTTTATAATATAAT
*
73669676 TTTTAATA--TTTATAATACAAT
1 TTTTAATATTTTTATAATATAAT
73669697 TTTT
1 TTTT
73669701 TTAAAAAAAT
Statistics
Matches: 55, Mismatches: 14, Indels: 10
0.70 0.18 0.13
Matches are distributed among these distances:
21 16 0.29
23 21 0.38
24 7 0.13
25 11 0.20
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (23 bp):
TTTTAATATTTTTATAATATAAT
Found at i:73676530 original size:10 final size:10
Alignment explanation
Indices: 73676515--73676546 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
73676505 TAATTTAGAC
73676515 TTTGTTTTTT
1 TTTGTTTTTT
73676525 TTTGTTTTTT
1 TTTGTTTTTT
73676535 TTT-TTTTTT
1 TTTGTTTTTT
73676544 TTT
1 TTT
73676547 ACTTTTAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (10 bp):
TTTGTTTTTT
Found at i:73679614 original size:22 final size:23
Alignment explanation
Indices: 73679586--73679638 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
73679576 TTACTCTCTT
* *
73679586 TTTTTTTGCTATTTTATTGTTA-
1 TTTTTTTCCTATTATATTGTTAC
*
73679608 TTTTTTTCCTATTATGTTGTTAC
1 TTTTTTTCCTATTATATTGTTAC
73679631 TATTTTTT
1 T-TTTTTT
73679639 TGAAGTAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 19 0.73
23 1 0.04
24 6 0.23
ACGTcount: A:0.13, C:0.08, G:0.08, T:0.72
Consensus pattern (23 bp):
TTTTTTTCCTATTATATTGTTAC
Found at i:73679869 original size:2 final size:2
Alignment explanation
Indices: 73679820--73679854 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
73679810 TTTAGTGTAT
73679820 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73679855 TTTAAAAGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:73680100 original size:32 final size:30
Alignment explanation
Indices: 73680056--73680125 Score: 77
Period size: 32 Copynumber: 2.3 Consensus size: 30
73680046 TATTATAATC
*
73680056 TATAATATAATAATAATATTAATAATTATA
1 TATAATATAATAATAATAGTAATAATTATA
** *
73680086 TATACATATTAATAATTTTAGTAATAGTTATA
1 TATA-ATA-TAATAATAATAGTAATAATTATA
*
73680118 TATTATAT
1 TATAATAT
73680126 TATTATATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
30 5 0.15
31 6 0.18
32 22 0.67
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (30 bp):
TATAATATAATAATAATAGTAATAATTATA
Found at i:73683775 original size:30 final size:30
Alignment explanation
Indices: 73683741--73683933 Score: 260
Period size: 30 Copynumber: 6.4 Consensus size: 30
73683731 AATCTTAGCC
*
73683741 TTTTCCACCACCAACTCCACTAGCCACTCT
1 TTTTCCACCACCAACTCCACTAGCCACACT
* *
73683771 TTTTCTACCACCAACTCCACTAGCCACTCT
1 TTTTCCACCACCAACTCCACTAGCCACACT
*
73683801 TTTTCCACCACCAACTCCACTAGCCACACC
1 TTTTCCACCACCAACTCCACTAGCCACACT
*
73683831 TTTTCCACCACCAACTCCACTAGCCACACC
1 TTTTCCACCACCAACTCCACTAGCCACACT
*
73683861 TTTTCCACCACCAAATCCACTAGCCACACT
1 TTTTCCACCACCAACTCCACTAGCCACACT
** ** * *
73683891 TGCTCCATTACCTACTCCACTAACCACACT
1 TTTTCCACCACCAACTCCACTAGCCACACT
**
73683921 TGCTCCACCACCA
1 TTTTCCACCACCA
73683934 TTTGTACCTA
Statistics
Matches: 147, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 147 1.00
ACGTcount: A:0.26, C:0.47, G:0.04, T:0.24
Consensus pattern (30 bp):
TTTTCCACCACCAACTCCACTAGCCACACT
Found at i:73683837 original size:18 final size:18
Alignment explanation
Indices: 73683816--73683868 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
73683806 CACCACCAAC
73683816 TCCACTAGCCACACCTTT
1 TCCACTAGCCACACCTTT
*
73683834 TCCACCA-CCA-A-C---
1 TCCACTAGCCACACCTTT
73683846 TCCACTAGCCACACCTTT
1 TCCACTAGCCACACCTTT
73683864 TCCAC
1 TCCAC
73683869 CACCAAATCC
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
12 6 0.22
13 3 0.11
14 1 0.04
15 2 0.07
16 1 0.04
17 3 0.11
18 11 0.41
ACGTcount: A:0.25, C:0.49, G:0.04, T:0.23
Consensus pattern (18 bp):
TCCACTAGCCACACCTTT
Found at i:73684459 original size:24 final size:23
Alignment explanation
Indices: 73684431--73684483 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
73684421 TTGTTATTAT
*
73684431 TATATTTCTTAATATTATATTAGA
1 TATATTTCTT-ATAATATATTAGA
* *
73684455 TATA-TTCTTTTAATATATTAGG
1 TATATTTCTTATAATATATTAGA
73684477 TATATTT
1 TATATTT
73684484 TAAATTCTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 14 0.56
23 7 0.28
24 4 0.16
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.57
Consensus pattern (23 bp):
TATATTTCTTATAATATATTAGA
Found at i:73684639 original size:19 final size:19
Alignment explanation
Indices: 73684615--73684673 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 19
73684605 TTTTTAACAC
73684615 TATATTATGTACATATTTT
1 TATATTATGTACATATTTT
**
73684634 TATATTATCACGTATTTATTTT
1 TATATTAT---GTACATATTTT
73684656 T-TATATATGTACATATTT
1 TATAT-TATGTACATATTT
73684674 ATGTAGTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
19 16 0.50
21 3 0.09
22 13 0.41
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.58
Consensus pattern (19 bp):
TATATTATGTACATATTTT
Found at i:73684813 original size:16 final size:15
Alignment explanation
Indices: 73684789--73684836 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
73684779 TAATTATTAT
*
73684789 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
73684805 TATTTTAATATTTTA
1 TATTTTAATATTTTA
73684820 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
73684836 T
1 T
73684837 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:73684824 original size:7 final size:8
Alignment explanation
Indices: 73684789--73684840 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
73684779 TAATTATTAT
*
73684789 TATTCTAA
1 TATTTTAA
*
73684797 TATTTTGA
1 TATTTTAA
73684805 TATTTTAA
1 TATTTTAA
73684813 TATTTT-A
1 TATTTTAA
73684820 TATTTTATA
1 TATTTTA-A
*
73684829 TATTTTAT
1 TATTTTAA
73684837 TATT
1 TATT
73684841 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:73688624 original size:17 final size:17
Alignment explanation
Indices: 73688604--73688638 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
73688594 GACAGTCATG
*
73688604 AAAAGAAAAAGAAAAAA
1 AAAACAAAAAGAAAAAA
73688621 AAAACAAAAAGAAAAAA
1 AAAACAAAAAGAAAAAA
73688638 A
1 A
73688639 CAAAAGAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.89, C:0.03, G:0.09, T:0.00
Consensus pattern (17 bp):
AAAACAAAAAGAAAAAA
Found at i:73688643 original size:6 final size:6
Alignment explanation
Indices: 73688604--73688636 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
73688594 GACAGTCATG
*
73688604 AAAAGA AAAAGA AAAA-A AAAACA AAAAGA AAAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAA
73688637 AACAAAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:73690944 original size:71 final size:72
Alignment explanation
Indices: 73690826--73690991 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 72
73690816 TATTTTGATG
* * **
73690826 TTTCAATTTCTGTTTGTCAAAAATCTACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGGTACGC
1 TTTCAATTTCTGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
73690891 TGAGGTAT
65 TGAGGTAT
* *
73690899 TTTCAATTTAT-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGGT
1 TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCT
73690963 GAGGTAT
66 GAGGTAT
73690970 TTTCAATTTCTGTTTTCAAAAA
1 TTTCAATTTCTGTTTTCAAAAA
73690992 AAAAAATCAA
Statistics
Matches: 85, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
71 62 0.73
72 13 0.15
73 10 0.12
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (72 bp):
TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCT
GAGGTAT
Found at i:73691084 original size:71 final size:71
Alignment explanation
Indices: 73691001--73691136 Score: 209
Period size: 71 Copynumber: 1.9 Consensus size: 71
73690991 AAAAAAATCA
* * *
73691001 AAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCAAGTCACATTGAGGTATTTTCTATTT
1 AAAAAATCAACTCATATGGCGAAAGGTGAGTTAAGCCTCAAGACACATTGAGGTATTTTCAATTT
73691066 ATCATC
66 ATCATC
* * **
73691072 AAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACATGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATGGCGAAAGGTGAGTTAAGCCTCAAGACACATTGAGGTATTTTCAATTT
73691137 CTGTTCAATT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (71 bp):
AAAAAATCAACTCATATGGCGAAAGGTGAGTTAAGCCTCAAGACACATTGAGGTATTTTCAATTT
ATCATC
Found at i:73691220 original size:86 final size:85
Alignment explanation
Indices: 73691072--73691299 Score: 273
Period size: 85 Copynumber: 2.7 Consensus size: 85
73691062 ATTTATCATC
* * * * *
73691072 AAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACATGTTGAGGTATTTTCAA-TT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
*
73691136 T-CTG-TTCAATTTATGTTTTTTT
66 TCCTGTTTTAATTTA----TTTTT
** *
73691158 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
73691223 TCCTGTTTTAATTTATTTTT
66 TCCTGTTTTAATTTATTTTT
* * * **
73691243 CAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATT
73691300 TTCTATTTAT
Statistics
Matches: 123, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
85 55 0.45
86 54 0.44
87 3 0.02
88 3 0.02
89 8 0.07
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (85 bp):
AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
TCCTGTTTTAATTTATTTTT
Found at i:73691281 original size:85 final size:83
Alignment explanation
Indices: 73691072--73692573 Score: 706
Period size: 71 Copynumber: 18.5 Consensus size: 83
73691062 ATTTATCATC
* * * * *
73691072 AAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACATGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
73691137 CTGTTCAATTTATGTTTTTTT
66 CTGTTCAATTTA---TTTTTT
** *
73691158 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAA-TT
*
73691223 TCCTGTTTTAATTTA-TTTTT
65 T-CTG-TTCAATTTATTTTTT
* * * **
73691243 CAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAAGTCACATTGAGGTA---T---TTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
** *
73691302 C---T--ATTTA-TCATC
66 CTGTTCAATTTATTTTTT
* * * * * * *
73691314 AAAAAATCAACTCATATGGTGAGAGGTGAGTTGAACCTCAAGACATGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
*
73691379 TTGTTCAATTTATGTTTTTTT
66 CTGTTCAATTTA---TTTTTT
* * * *
73691400 TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTGTCAATTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAA-TT
*
73691464 TCGTGTTTTAATTTA-TTTTT
65 TC-TG-TTCAATTTATTTTTT
* * ** *
73691484 CAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
* *
73691549 -AG--C-----A----TC
66 CTGTTCAATTTATTTTTT
* * ** * * *
73691555 AAAAAATCAACTCATATTGTGAAAAGTGAGTTGAGCCT-TGGCTCACGTGCTGAGCTATTTTCAA
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAG-ACAC--GCTGAGGTATTGTCAA
* *
73691619 TTTCTGTTTTTAATGTCTA-GTTTT
63 TTTCTG--TTCAAT-T-TATTTTTT
* * * ** * *
73691643 AAAGAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGCCAATTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAA--T
* * *
73691708 TTGTGTTTTAATTTATTTTTCA
64 TTCTG-TTCAATTTATTTTT-T
* * * * *
73691730 AAAAAATCAACTCATATTGC-AAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTCGATT
1 AAAAAATCAACTCATATTGCGAA-AGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATT
* * *
73691794 TCTTCTTTCCAATTTCTGTTCTTCA
65 TC-T-GTT-CAATTTAT-TT-TT-T
* * **
73691819 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGA-G----GT--A--T
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
** *
73691875 -T-TTCAATTTA-TCATC
66 CTGTTCAATTTATTTTTT
* * * *
73691890 AAAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
73691955 CTGTT---TTTCA------
66 CTGTTCAATTT-ATTTTTT
* *
73691965 AAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGA-G----GT-AA---
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
*
73692021 -T-TTCAATTT-TGTTTGT
66 CTGTTCAATTTAT-TTTTT
* * * *
73692037 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
***
73692102 CTG-TC--TTTA---AAA
66 CTGTTCAATTTATTTTTT
* * * *
73692114 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
73692179 CTG-TC--TTTCA------
66 CTGTTCAATTT-ATTTTTT
* * * *
73692189 AAAAAATCAGCTCATATTGCGAGAGGTGGGTTGAACCTCAAGACACGCTGA-G----GT-AA--T
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
73692246 -T-TT-AATTT-TTGTTTGT
66 CTGTTCAATTTATT-TTT-T
* * * * * * * * *
73692262 CAAAAATCAGCTCATATTGTGAGAGGTGAGTTGAACTTCAAG--ACGCTGAGGTGTTTTCCATTT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
* *
73692325 CTGTTCTTTAATTTCTGTGTTTCAAA
66 CTGTTC---AATTTAT-T-TTT---T
* ** * ** * *
73692351 AAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAA
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCC-TCA-AGACACGCTGAGGTATTGTCAAT
* *
73692416 TTCTGTTTTTCAAATATTGTTTTTCCAA
64 TTCTG---TTC-AAT-TTATTTTT---T
* * * * *
73692444 AAAAAATCAACTCATATTGCGAGAGATGAGTTCAGCCTC-AGAACACGCTGAGATATTTTCAATT
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAG-ACACGCTGAGGTATTGTCAATT
* *
73692508 TCTTTTTTTTCAATTTATGTTTGTCA
65 TC----TGTTCAATTTAT-TTT-T-T
*
73692534 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
1 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCA
73692574 GGTCACACGC
Statistics
Matches: 1127, Mismatches: 157, Indels: 259
0.73 0.10 0.17
Matches are distributed among these distances:
64 2 0.00
65 1 0.00
66 2 0.00
67 7 0.01
69 4 0.00
70 3 0.00
71 148 0.13
72 50 0.04
73 57 0.05
74 5 0.00
75 101 0.09
76 4 0.00
77 77 0.07
78 8 0.01
79 4 0.00
80 8 0.01
81 3 0.00
82 13 0.01
84 46 0.04
85 98 0.09
86 116 0.10
87 75 0.07
88 56 0.05
89 91 0.08
90 44 0.04
91 28 0.02
92 5 0.00
93 60 0.05
94 4 0.00
95 4 0.00
96 3 0.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (83 bp):
AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTT
CTGTTCAATTTATTTTTT
Found at i:73691451 original size:156 final size:155
Alignment explanation
Indices: 73691158--73691455 Score: 368
Period size: 156 Copynumber: 1.9 Consensus size: 155
73691148 ATGTTTTTTT
* * ** *
73691158 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTT
1 AAAAAATCAACTCATATGGCGAAAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTGTCAATTT
*
73691223 TCCTGTTTTAATTTATTTTTCAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAAGTCA
66 T-CTGTTTTAATTTATTTTTCAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAAGGCA
*
73691288 CATTGAGGTATTTTCTATTTATCATC
130 CACTGAGGTATTTTCTATTTATCATC
* * * * *
73691314 AAAAAATCAACTCATATGGTGAGAGGTGAGTTGAACCTCAAGACATGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATGGCGAAAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTGTCAATTT
* * * * *
73691379 T-TG-TTCAATTTATGTTTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG
66 TCTGTTTTAATTTA----TTTTTCAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAAG
*
73691441 GCACGCTGAGGTATT
127 GCACACTGAGGTATT
73691456 GTCAATTTTC
Statistics
Matches: 120, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
153 8 0.07
154 2 0.02
156 69 0.57
157 41 0.34
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (155 bp):
AAAAAATCAACTCATATGGCGAAAGGTGAGTTGAACCTCAAGACACGCTGAGGTATTGTCAATTT
TCTGTTTTAATTTATTTTTCAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAAGGCAC
ACTGAGGTATTTTCTATTTATCATC
Found at i:73691586 original size:241 final size:243
Alignment explanation
Indices: 73690909--73692105 Score: 1244
Period size: 242 Copynumber: 5.0 Consensus size: 243
73690899 TTTCAATTTA
* ** * * *
73690909 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGGTGAGGTATTTTC
1 TTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTC
*** **** *
73690974 AA-TTTC-TGTTTTCAAAAAAAAAAATCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGC
66 AATTTTCGTGTTTT--AATTTATTTTTC-AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGC
*
73691037 CTCAAGTCACATTGAGGTATTTTCTATTTATCATCAAAAAATCAACTCATATGGCGAGAGGTGAG
128 CTCAAGTCACATTGAGGTATTTTCTATTTATCATCAAAAAATCAACTCATATGGTGAGAGGTGAG
73691102 TTGAGCCTCAAGACATGTTGAGGTATTTTCAATTTCTGTTCAATTTATGTT
193 TTGAGCCTCAAGACATGTTGAGGTATTTTCAATTTCTGTTCAATTTATGTT
* *
73691153 TTTTTAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTC
1 TTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTC
* *
73691218 AATTTTCCTGTTTTAATTTATTTTTC-AAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTC
66 AATTTTCGTGTTTTAATTTATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTC
73691282 AAGTCACATTGAGGTATTTTCTATTTATCATCAAAAAATCAACTCATATGGTGAGAGGTGAGTTG
131 AAGTCACATTGAGGTATTTTCTATTTATCATCAAAAAATCAACTCATATGGTGAGAGGTGAGTTG
* *
73691347 AACCTCAAGACATGTTGAGGTATTTTCAATTTTTGTTCAATTTATGTT
196 AGCCTCAAGACATGTTGAGGTATTTTCAATTTCTGTTCAATTTATGTT
73691395 TTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTGTC
1 TTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTC
73691459 AATTTTCGTGTTTTAATTTATTTTTC-AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTC
66 AATTTTCGTGTTTTAATTTATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTC
* * * * *
73691523 AAGTCACATTGAGGTATTTTCAATTTAGCATCAAAAAATCAACTCATATTGTGAAAAGTGAGTTG
131 AAGTCACATTGAGGTATTTTCTATTTATCATCAAAAAATCAACTCATATGGTGAGAGGTGAGTTG
** * * *
73691588 AGCCTTGGC-TCACGTGCTGAGCTATTTTCAATTTCTGTT---TTTAATGTCT
196 AGCC-T--CAAGACATGTTGAGGTATTTTCAATTTCTGTTCAATTT-ATGT-T
** * *
73691637 AGTTTTAAAGAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGC
1 TTTTTTAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGT
*
73691702 CAATTTTTGTGTTTTAATTTATTTTTCAAAAAAATCAACTCATATTGC-AAGAGGTGAGTTGAGC
65 CAATTTTCGTGTTTTAATTTATTTTTC-AAAAAATCAACTCATATTGCGAA-AGGTGAGTTGAGC
* * * * *
73691766 CTCAGGGCACACTGAGGTATTTTCGATTTCTTCTTTCCAATTTCTGTTCTTCAAAAAAATCAACT
128 CTCAAGTCACATTGAGG-----T--A-TT-TTC--T---A-TT-T-ATCATC-AAAAAATCAACT
* * * ** * *
73691831 CATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAA-TT-T-ATC-A-TCA
175 CATATGGTGAGAGGTGAGTTGAGCCTCAAGACATGTTGAGGTATTTTCAATTTCTGTTCAATTTA
73691891 ----
240 TGTT
* ** * * *
73691891 ------AAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTC
* *
73691950 AA-TTTC-TG-TTT--TTCA------AAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTC
66 AATTTTCGTGTTTTAATTTATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTC
* * ** * * * ** * *
73692004 AGGACACGCTGAGGTAATTTCAATTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGT
131 AAGTCACATTGAGGTATTTTCTA-TTT-ATCATCAAAAAATCAACTCATATGGTGAGAGGTGAGT
*
73692068 TGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGT
194 TGAGCCTCAAGACATGTTGAGGTATTTTCAATTTCTGT
73692106 CTTTAAAAAA
Statistics
Matches: 836, Mismatches: 80, Indels: 97
0.83 0.08 0.10
Matches are distributed among these distances:
218 59 0.07
219 2 0.00
220 7 0.01
221 4 0.00
226 3 0.00
227 1 0.00
228 1 0.00
230 1 0.00
235 48 0.06
236 1 0.00
240 3 0.00
241 149 0.18
242 200 0.24
243 58 0.07
244 113 0.14
245 8 0.01
246 55 0.07
247 50 0.06
248 3 0.00
251 1 0.00
253 1 0.00
254 2 0.00
255 3 0.00
259 2 0.00
260 3 0.00
261 5 0.01
262 15 0.02
263 4 0.00
264 34 0.04
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (243 bp):
TTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTC
AATTTTCGTGTTTTAATTTATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTC
AAGTCACATTGAGGTATTTTCTATTTATCATCAAAAAATCAACTCATATGGTGAGAGGTGAGTTG
AGCCTCAAGACATGTTGAGGTATTTTCAATTTCTGTTCAATTTATGTT
Found at i:73691749 original size:87 final size:86
Alignment explanation
Indices: 73691555--73691883 Score: 338
Period size: 87 Copynumber: 3.8 Consensus size: 86
73691545 ATTTAGCATC
* * * * ** *
73691555 AAAAAATCAACTCATATTGTGAAAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC--GCTGAGGTATTTTCAAT
* *
73691620 TTCTGTTTTTAATGTCTAGTTTT--
64 TTTTGTTTTTAAT-T-TATTTTTCA
* * **
73691643 AAAGAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGCCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTT
73691708 TTGTGTTTTAATTTATTTTTCA
66 TTGT-TTTTAATTTATTTTTCA
* * * *
73691730 AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTCGATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTT
* ** *
73691795 CTTCTTTCCAATTTCTGTTCTTCA
66 -TTGTTTTTAATTTAT-TT-TTCA
** * **
73691819 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTT
73691884 ATCATCAAAA
Statistics
Matches: 205, Mismatches: 30, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
85 6 0.03
86 20 0.10
87 72 0.35
88 43 0.21
89 64 0.31
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (86 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTT
TTGTTTTTAATTTATTTTTCA
Found at i:73691855 original size:89 final size:87
Alignment explanation
Indices: 73691649--73691883 Score: 319
Period size: 89 Copynumber: 2.7 Consensus size: 87
73691639 TTTTAAAGAG
* * ** *
73691649 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGCCAATTTTTGTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTCAATTTTTCTGT
**
73691714 TTTAATTTATTTTTCAAAAAAA
66 TCCAATTTATTTTTCAAAAAAA
* *
73691736 TCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTCGATTTCTTCT-
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTCAATTT-TTCTG
*
73691800 TTCCAATTTCTGTTCTTCAAAAAAA
65 TTCCAATTTAT-TT-TTCAAAAAAA
* * *
73691825 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAATTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTCAATTT
73691884 ATCATCAAAA
Statistics
Matches: 130, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
87 61 0.47
88 5 0.04
89 64 0.49
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (87 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTCAATTTTTCTGT
TCCAATTTATTTTTCAAAAAAA
Found at i:73692002 original size:75 final size:75
Alignment explanation
Indices: 73691803--73692329 Score: 682
Period size: 75 Copynumber: 7.1 Consensus size: 75
73691793 TTCTTCTTTC
* * *
73691803 CAATTTCTGTTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATT
1 CAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
73691868 GAGGTATTTT
66 GAGGTATTTT
* ** *
73691878 CAA-TT-T-ATCATC-AAAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCAAGACACGTT
1 CAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
73691939 GAGGTATTTT
66 GAGGTATTTT
* * *
73691949 CAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCT
1 CAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
*
73692014 GAGGTAATTT
66 GAGGTATTTT
*
73692024 CAATTT-TGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
1 CAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
73692086 GAGGTATTTT
66 GAGGTATTTT
** *
73692096 CAATTTCTGTCTTTAAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 CAATTTCTGT-TTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
73692161 TTGAGGTATTTT
64 TTGAGGTATTTT
* * * * *
73692173 CAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGGGTTGAACCTCAAGACACGCT
1 CAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
73692238 GAGGTAATTTT
66 GAGGT-ATTTT
* * * * * * *
73692249 -AATTTTTGTTTGTC--AAAAATCAGCTCATATTGTGAGAGGTGAGTTGAACTTCAAG--ACGCT
1 CAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
*
73692309 GAGGTGTTTT
66 GAGGTATTTT
*
73692319 CCATTTCTGTT
1 CAATTTCTGTT
73692330 CTTTAATTTC
Statistics
Matches: 404, Mismatches: 37, Indels: 26
0.87 0.08 0.06
Matches are distributed among these distances:
70 4 0.01
71 77 0.19
72 66 0.16
73 43 0.11
74 14 0.03
75 126 0.31
76 7 0.02
77 67 0.17
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (75 bp):
CAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
GAGGTATTTT
Found at i:73692205 original size:224 final size:224
Alignment explanation
Indices: 73691820--73692335 Score: 769
Period size: 224 Copynumber: 2.3 Consensus size: 224
73691810 TGTTCTTCAA
*
73691820 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTCAA-TT-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-CACGTTGAGGTATTTTCAATTTC
* ** *
73691883 TATC----ATCAAAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCAAGACACGTTGAGGT
65 TGTCTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT
* * * *
73691944 ATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGAC
130 ATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
73692009 ACGCTGAGGTAATTTCAA-TTTTGTTTGTC
195 ACGCTGAGGTAATTTCAATTTTTGTTTGTC
73692038 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-CACGTTGAGGTATTTTCAATTTC
*
73692103 TGTCTTTAAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT
65 TGTCTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT
* *
73692168 ATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGGGTTGAACCTCAAGAC
130 ATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
*
73692233 ACGCTGAGGTAATTTTAATTTTTGTTTGTC
195 ACGCTGAGGTAATTTCAATTTTTGTTTGTC
* * * * * * *
73692263 AAAAATCAGCTCATATTGTGAGAGGTGAGTTGAACTTCAAG-ACGCTGAGGTGTTTTCCATTTCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGCACGTTGAGGTATTTTCAATTTCT
73692327 GTTCTTTAA
66 G-TCTTTAA
73692336 TTTCTGTGTT
Statistics
Matches: 269, Mismatches: 21, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
218 59 0.22
219 2 0.01
220 3 0.01
223 21 0.08
224 136 0.51
225 48 0.18
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (224 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGCACGTTGAGGTATTTTCAATTTCT
GTCTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
CGCTGAGGTAATTTCAATTTTTGTTTGTC
Found at i:73692438 original size:13 final size:14
Alignment explanation
Indices: 73692408--73692440 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
73692398 CGCTGAGGTA
73692408 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
73692422 TTTTCAAATAT-TGT
1 TTTTCAAAT-TCTGT
73692436 TTTTC
1 TTTTC
73692441 CAAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.94
15 1 0.06
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.61
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:73692447 original size:93 final size:91
Alignment explanation
Indices: 73692304--73692786 Score: 384
Period size: 91 Copynumber: 5.3 Consensus size: 91
73692294 GAACTTCAAG
* * * * *
73692304 ACGCTGAGGTGTTTTCCATTTCTGTTCTTT--AATTTCTGTGTTTCAAAAAAAAATCAGCTCATA
1 ACGCTGAGGTATTTTCAAATTCTGTT-TTTCAAATTT-TGTTTTTC--AAAAAAATCAACTCATA
*
73692367 TTGCGAGTGGTGAGTTGAGCCTTGACTCAC
62 TTGCGAGAGGTGAGTTGAGCCTTGACTCAC
*
73692397 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATATTGTTTTTCCAAAAAAAATCAACTCATATT
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTT-C-AAAAAAATCAACTCATATT
* * *
73692462 GCGAGAGATGAGTTCAGCCTCAGA---AC
64 GCGAGAGGTGAGTTGAGCCT-TGACTCAC
* * * *
73692488 ACGCTGAGATATTTTCAATTTCTTTTTTTTC-AATTTATGTTTGTCAAAAAAATCAACTCATATT
1 ACGCTGAGGTATTTTCAAATTC-TGTTTTTCAAATTT-TGTTTTTCAAAAAAATCAACTCATATT
* *
73692552 GCGAGAGGTGAGTTGAGCC-TCAGGTCAC
64 GCGAGAGGTGAGTTGAGCCTTGA-CTCAC
** ** * * *
73692580 ACGCCAAGGTATTTTCAATTGATT-T-TTTTTTTAATTAATGCTTTGC--AAAAATCAACTCATA
1 ACGCTGAGGTATTTTCAA---ATTCTGTTTTTCAAATT-TTGTTTTTCAAAAAAATCAACTCATA
* * *
73692641 TTACGAGAGGTGAGTTGAGCCTCGAGTCAC
62 TTGCGAGAGGTGAGTTGAGCCTTGACTCAC
** * * * * *
73692671 ATACCGAGATATTTTCAAAATCTGTTTTACAAATTTTG-TTTT---AAAAATCAACTCATATTAC
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCAAAAAAATCAACTCATATTGC
* *
73692732 GAGAAGTGAGTTGAGCCTTGGCTCAC
66 GAGAGGTGAGTTGAGCCTTGACTCAC
** * *
73692758 GTGCTGAGCTATTTTCAATTTCTGTTTTT
1 ACGCTGAGGTATTTTCAAATTCTGTTTTT
73692787 AATGTCTAGT
Statistics
Matches: 320, Mismatches: 52, Indels: 42
0.77 0.13 0.10
Matches are distributed among these distances:
87 63 0.20
88 6 0.02
89 3 0.01
90 44 0.14
91 81 0.25
92 39 0.12
93 75 0.23
94 7 0.02
95 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (91 bp):
ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCAAAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTTGACTCAC
Found at i:73692570 original size:183 final size:177
Alignment explanation
Indices: 73692262--73692786 Score: 474
Period size: 183 Copynumber: 2.9 Consensus size: 177
73692252 TTTTGTTTGT
* * * * * * * *
73692262 CAAAAATCAGCTCATATTGTGAGAGGTGAGTTGAACTTC--AAGACGCTGAGGTGTTTTCCATTT
1 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGATATTTTCAATTT
* * * *
73692325 CTGTTCTTT-AATTTCTGTGTTTCAAAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCT
66 CTTTTTTTTCAATTT-TGT-TTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* *
73692389 TGACTCACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATATTGTTTTTC
127 TGACTCACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATAATG-CTTTC
* *
73692441 CAAAAAAAATCAACTCATATTGCGAGAGATGAGTTCAGCCTCAGAACACGCTGAGATATTTTCAA
1 C---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGATATTTTCAA
73692506 TTTCTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
63 TTTCTTTTTTTTCAATTT-TGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * ** * * * *
73692571 -TCAGGTCACACGCCAAGGTATTTTCAATTGATT-TTTTTTTTAATTAATGCTTTG
126 TTGA-CTCACACGCTGAGGTATTTTCAA---ATTCTGTTTTTCAAATAATGCTTTC
* * ** * *
73692625 CAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGAGTCACATACCGAGATATTTTCAAA
1 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-AACACGCTGAGATATTTTCAAT
* * * * *
73692690 ATC-TGTTTTACAAATTTTGTTTT---AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTT
64 TTCTTTTTTTTC-AATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
* ** * *
73692751 GGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTTT
128 GACTCACACGCTGAGGTATTTTCAAATTCTGTTTTT
73692787 AATGTCTAGT
Statistics
Matches: 282, Mismatches: 48, Indels: 35
0.77 0.13 0.10
Matches are distributed among these distances:
175 2 0.01
176 6 0.02
178 51 0.18
179 2 0.01
181 36 0.13
182 47 0.17
183 80 0.28
184 33 0.12
185 22 0.08
186 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (177 bp):
CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGATATTTTCAATTT
CTTTTTTTTCAATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAC
TCACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATAATGCTTTC
Found at i:73693496 original size:30 final size:30
Alignment explanation
Indices: 73693462--73693594 Score: 167
Period size: 30 Copynumber: 4.4 Consensus size: 30
73693452 AATCTTAGCC
*
73693462 TTTTCCACCACCAACTCCACTAGCCACTCT
1 TTTTCCACCACCAACTCCACTAGCCACACT
*
73693492 TTTTCCACCACCAACTCCACTAGCCACACC
1 TTTTCCACCACCAACTCCACTAGCCACACT
*
73693522 TTTTCCACCACCAAATCCACTAGCCACACT
1 TTTTCCACCACCAACTCCACTAGCCACACT
** ** * *
73693552 TGCTCCATTACCTACTCCACTAACCACACT
1 TTTTCCACCACCAACTCCACTAGCCACACT
**
73693582 TGCTCCACCACCA
1 TTTTCCACCACCA
73693595 CTTGTACCTA
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 89 1.00
ACGTcount: A:0.26, C:0.47, G:0.04, T:0.23
Consensus pattern (30 bp):
TTTTCCACCACCAACTCCACTAGCCACACT
Found at i:73694122 original size:24 final size:23
Alignment explanation
Indices: 73694094--73694146 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
73694084 TTGTTATTAT
*
73694094 TATATTTCTTAATATTATATTAGA
1 TATATTTCTT-ATAATATATTAGA
* *
73694118 TATA-TTCTTTTAATATATTAGG
1 TATATTTCTTATAATATATTAGA
73694140 TATATTT
1 TATATTT
73694147 TAAATTCTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 14 0.56
23 7 0.28
24 4 0.16
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.57
Consensus pattern (23 bp):
TATATTTCTTATAATATATTAGA
Found at i:73694209 original size:25 final size:25
Alignment explanation
Indices: 73694094--73694307 Score: 101
Period size: 25 Copynumber: 8.7 Consensus size: 25
73694084 TTGTTATTAT
73694094 TATATTTCTTAATATTATATTA-G-A
1 TATATTT-TTAATATTATATTATGTA
* *
73694118 TATATTCTTT--TAATATATTA-G-G
1 TATATT-TTTAATATTATATTATGTA
* *
73694140 TATATTTTAAAT-TCTATATTACGTA
1 TATATTTTTAATAT-TATATTATGTA
* * *
73694165 TATA-TATT-ATACTATTTTATGTA
1 TATATTTTTAATATTATATTATGTA
* * *
73694188 CATATCTTTAATATTATATTATTTA
1 TATATTTTTAATATTATATTATGTA
* *
73694213 TATATTTTTTTTCTACATGTTATCTTATGTA
1 TATA----TTTT-TA-ATATTATATTATGTA
* *
73694244 TATA-TCTT-A-ACTATATTATGTA
1 TATATTTTTAATATTATATTATGTA
* * *
73694266 TGTATTTTTAACACTATATTATGTA
1 TATATTTTTAATATTATATTATGTA
*
73694291 CATATTTTTAATATTAT
1 TATATTTTTAATATTAT
73694308 CACGTATTTA
Statistics
Matches: 141, Mismatches: 31, Indels: 35
0.68 0.15 0.17
Matches are distributed among these distances:
21 2 0.01
22 29 0.21
23 26 0.18
24 14 0.10
25 47 0.33
26 2 0.01
29 3 0.02
30 2 0.01
31 16 0.11
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (25 bp):
TATATTTTTAATATTATATTATGTA
Found at i:73694306 original size:20 final size:20
Alignment explanation
Indices: 73694281--73694339 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
73694271 TTTTAACACT
73694281 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
73694301 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
73694324 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
73694340 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:73694481 original size:16 final size:15
Alignment explanation
Indices: 73694457--73694504 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
73694447 TAATTATTAT
*
73694457 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
73694473 TATTTTAATATTTTA
1 TATTTTAATATTTTA
73694488 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
73694504 T
1 T
73694505 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:73694492 original size:7 final size:8
Alignment explanation
Indices: 73694457--73694508 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
73694447 TAATTATTAT
*
73694457 TATTCTAA
1 TATTTTAA
*
73694465 TATTTTGA
1 TATTTTAA
73694473 TATTTTAA
1 TATTTTAA
73694481 TATTTT-A
1 TATTTTAA
73694488 TATTTTATA
1 TATTTTA-A
*
73694497 TATTTTAT
1 TATTTTAA
73694505 TATT
1 TATT
73694509 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:73696334 original size:20 final size:21
Alignment explanation
Indices: 73696248--73696336 Score: 99
Period size: 21 Copynumber: 4.1 Consensus size: 21
73696238 TCAAAAAATA
*
73696248 TTTGTCTAAGTCACTTCGTTTCTT
1 TTTGTCTAAGTTACTTC---TCTT
*
73696272 TTTGTCCAAGTTACTTCTCTT
1 TTTGTCTAAGTTACTTCTCTT
*
73696293 TTTGTCTAAGTTGCTTCTCTT
1 TTTGTCTAAGTTACTTCTCTT
* *
73696314 TTTGTCTAACTCACTTC-CTT
1 TTTGTCTAAGTTACTTCTCTT
73696334 TTT
1 TTT
73696337 TCTTTGTGAG
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 37 0.64
24 15 0.26
ACGTcount: A:0.12, C:0.22, G:0.10, T:0.55
Consensus pattern (21 bp):
TTTGTCTAAGTTACTTCTCTT
Found at i:73706504 original size:16 final size:18
Alignment explanation
Indices: 73706477--73706513 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
73706467 GAAAAGCTGT
73706477 TTTAAGAAATTTA-TATA
1 TTTAAGAAATTTATTATA
73706494 TTTAA-AAATTTATTATA
1 TTTAAGAAATTTATTATA
73706511 TTT
1 TTT
73706514 TCATTGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTAAGAAATTTATTATA
Found at i:73710816 original size:13 final size:13
Alignment explanation
Indices: 73710798--73710823 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73710788 AAGTTTGGAA
73710798 AAAATTATATACG
1 AAAATTATATACG
73710811 AAAATTATATACG
1 AAAATTATATACG
73710824 TAATTTCTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (13 bp):
AAAATTATATACG
Found at i:73713133 original size:20 final size:21
Alignment explanation
Indices: 73713096--73713139 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
73713086 AAACATAATA
73713096 ATAGTATTAAAAAGTATATAC
1 ATAGTATTAAAAAGTATATAC
73713117 ATAGTATTAAAAA-TATATAC
1 ATAGTATTAAAAAGTATATAC
73713137 ATA
1 ATA
73713140 ATATATACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (21 bp):
ATAGTATTAAAAAGTATATAC
Found at i:73713142 original size:11 final size:11
Alignment explanation
Indices: 73713110--73713150 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
73713100 TATTAAAAAG
*
73713110 TATATACATAG
1 TATATACATAA
*
73713121 TAT-TA-AAAA
1 TATATACATAA
73713130 TATATACATAA
1 TATATACATAA
73713141 TATATACATA
1 TATATACATA
73713151 TTAGAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 5 0.20
10 4 0.16
11 16 0.64
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (11 bp):
TATATACATAA
Found at i:73713165 original size:69 final size:65
Alignment explanation
Indices: 73713090--73713243 Score: 152
Period size: 69 Copynumber: 2.3 Consensus size: 65
73713080 AAATATAAAC
* * * * *
73713090 ATAATAATAGTATTAAAAAGTATATACATAGTATTA-A-AAATATATACATAATATATACATATT
1 ATAATAATAATATTAAAAACTAT-TA-ATAATACTACATAAATATACACAT-ATATAT--ATATT
73713153 AGAAAA
61 A-AAAA
* *
73713159 ATAATAATATTA-AAAACAACTATTAATAATACTACATAAATATACACATATATATATATTAAAA
1 ATAATAATAATATTAAA-AACTATTAATAATACTACATAAATATACACATATATATATATTAAAA
73713223 A
65 A
73713224 ATACATAATAATATTAAAAA
1 ATA-ATAATAATATTAAAAA
73713244 TACGTACATA
Statistics
Matches: 72, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
65 7 0.10
66 16 0.22
67 10 0.14
68 12 0.17
69 27 0.38
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.32
Consensus pattern (65 bp):
ATAATAATAATATTAAAAACTATTAATAATACTACATAAATATACACATATATATATATTAAAAA
Found at i:73713221 original size:23 final size:22
Alignment explanation
Indices: 73713195--73713262 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 22
73713185 TAATACTACA
73713195 TAAATATACACATATATATATAT
1 TAAA-ATACACATATATATATAT
* *
73713218 TAAAAAATACATA-ATA-ATAT
1 TAAAATACACATATATATATAT
73713238 TAAAAATACGTACATAATATATATA
1 T-AAAATAC--ACAT-ATATATATA
73713263 CATATAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
20 5 0.14
21 8 0.23
22 7 0.20
23 8 0.23
24 1 0.03
25 3 0.09
26 3 0.09
ACGTcount: A:0.57, C:0.07, G:0.01, T:0.34
Consensus pattern (22 bp):
TAAAATACACATATATATATAT
Found at i:73713246 original size:56 final size:61
Alignment explanation
Indices: 73713179--73713292 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 61
73713169 TAAAAACAAC
*
73713179 TATTAATAATAC-TACATAA-ATATACACATAT-ATATA-TATT-AAAAAATACATAATAA
1 TATTAAAAATACGTACATAATATATACACATATAATATAGTATTAAAAAAATACATAATAA
*
73713235 TATTAAAAATACGTACATAATATATATACATATAATATAGTTATTAAAAAAATACATA
1 TATTAAAAATACGTACATAATATATACACATATAATATAG-TATTAAAAAAATACATA
73713293 CAATATATAG
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
56 11 0.22
57 7 0.14
58 11 0.22
59 5 0.10
61 4 0.08
62 12 0.24
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.34
Consensus pattern (61 bp):
TATTAAAAATACGTACATAATATATACACATATAATATAGTATTAAAAAAATACATAATAA
Found at i:73713316 original size:27 final size:28
Alignment explanation
Indices: 73713253--73713326 Score: 82
Period size: 27 Copynumber: 2.7 Consensus size: 28
73713243 ATACGTACAT
*
73713253 AATATATATACATATAATATAGTTATTAAA
1 AATATACATACA-AT-ATATAGTTATTAAA
* *
73713283 AAAATACATACAATATATAG-TATTAAG
1 AATATACATACAATATATAGTTATTAAA
73713310 AATATAC--ACAATATATA
1 AATATACATACAATATATA
73713327 AAAATATAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 10 0.25
27 12 0.30
28 6 0.15
29 2 0.05
30 10 0.25
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.34
Consensus pattern (28 bp):
AATATACATACAATATATAGTTATTAAA
Found at i:73713344 original size:14 final size:15
Alignment explanation
Indices: 73713319--73713355 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
73713309 GAATATACAC
*
73713319 AATATATAAAAATAT
1 AATATATAAAAAAAT
73713334 AATAT-TAAAAAAAT
1 AATATATAAAAAAAT
73713348 AATATATA
1 AATATATA
73713356 CATATAAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
AATATATAAAAAAAT
Found at i:73713352 original size:27 final size:27
Alignment explanation
Indices: 73713322--73713403 Score: 74
Period size: 27 Copynumber: 2.8 Consensus size: 27
73713312 TATACACAAT
73713322 ATATAAAAATATAATATTAAAAAAATA
1 ATATAAAAATATAATATTAAAAAAATA
* *
73713349 ATATATACATATAAGTATTGATTAAAAAATA
1 ATATAAAAATATAA-TATT-A--AAAAAATA
* *
73713380 ATACTAATAATAGTAATAGTAAAA
1 ATA-TAAAAATA-TAATATTAAAA
73713404 TACTAACAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
27 12 0.28
28 4 0.09
29 4 0.09
31 12 0.28
32 8 0.19
33 3 0.07
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (27 bp):
ATATAAAAATATAATATTAAAAAAATA
Found at i:73713662 original size:2 final size:2
Alignment explanation
Indices: 73713655--73713682 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
73713645 AACATTAGAC
73713655 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73713683 GAAAATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73713828 original size:83 final size:84
Alignment explanation
Indices: 73713662--73713818 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 84
73713652 GACATATATA
* * *
73713662 TATATATATATATATATATATGAAAATATAAAAATACATAACTAATAATATTTAAGAATGTATAC
1 TATATATATATACATATATATGAAAATATAAAAATA-ATAACTAATAATATTAAAGAATATATAC
*
73713727 ATAATATAGTATAAAAAATG
65 ATAATATAATATAAAAAATG
* * *
73713747 TATATATATATACGTA-ATAT-AAAAT-TTAAAAT-ATACCTAAT-ATATTAAAAGAATATATAC
1 TATATATATATACATATATATGAAAATATAAAAATAATAACTAATAATATT-AAAGAATATATAC
73713807 ATAATATAATAT
65 ATAATATAATAT
73713819 TAAGAAAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
79 5 0.08
80 30 0.47
82 6 0.09
83 5 0.08
84 4 0.06
85 14 0.22
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.36
Consensus pattern (84 bp):
TATATATATATACATATATATGAAAATATAAAAATAATAACTAATAATATTAAAGAATATATACA
TAATATAATATAAAAAATG
Found at i:73715469 original size:21 final size:21
Alignment explanation
Indices: 73715443--73715496 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
73715433 AAGATAAGAT
**
73715443 CTGCAACTTCAATGTGCTCCA
1 CTGCAACTTCAATCAGCTCCA
* *
73715464 CTGCAACCTCGATCAGCTCCA
1 CTGCAACTTCAATCAGCTCCA
73715485 CTGCAACTTCAA
1 CTGCAACTTCAA
73715497 GGAGGCAAGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.26, C:0.37, G:0.13, T:0.24
Consensus pattern (21 bp):
CTGCAACTTCAATCAGCTCCA
Found at i:73715670 original size:88 final size:88
Alignment explanation
Indices: 73715561--73715858 Score: 304
Period size: 88 Copynumber: 3.4 Consensus size: 88
73715551 GTGATCCTGA
* * *
73715561 GCTCAACTCACTTCTCGCAATATAAGTTGACTCTTT-AAAAATAGATATT-AAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAAATAGA-ATTGAAAAACAGAAATTG
* *
73715624 AAAATAGCTCAGCATGTGAGCCAAG
65 AAAATACCTCAGC-TGTGAGCCGAG
* * ** *
73715649 GCTCAACTCACCTCTCTCAATATGAGTTGA-TTTTTGACAAACGGAAATTGAAAAACAGAACTTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAAATAG-AATTGAAAAACAGAAATTG
* *
73715713 AAATTACCTCAGC-GTG-TCCTGAG
65 AAAATACCTCAGCTGTGAGCC-GAG
* * * * *
73715736 GCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGGAACATA-AATTGAAGAACAGAAATT-A
1 GCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAAATAGAATTGAAAAACAGAAATTGA
73715799 AAATTACCTCAGCGTGTGAGCCGAG
66 AAA-TACCTCAGC-TGTGAGCCGAG
* * * *
73715824 GTTCAACTCACCTCTTGTAATACGAGTTGACTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGACTTTT
73715859 AAAAAAAACA
Statistics
Matches: 172, Mismatches: 29, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
85 3 0.02
86 27 0.16
87 37 0.22
88 78 0.45
89 27 0.16
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (88 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAAATAGAATTGAAAAACAGAAATTGA
AAATACCTCAGCTGTGAGCCGAG
Found at i:73715853 original size:175 final size:163
Alignment explanation
Indices: 73715555--73716166 Score: 463
Period size: 175 Copynumber: 3.7 Consensus size: 163
73715545 CGGCATGTGA
* * * *
73715555 TCCTGA-GCTCAACTCACTTCTCGCAATATAAGTTGACTCTTTAAAAATAGATATTAAAAACAGA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAATAGATATTAAAAACAGA
* * *
73715619 AATTGAAAATAGCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTCTCAATATGAGTTGATTTTT
66 AATTGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTCTCAATACGAGTTGACTTTT
*
73715684 GACAAACGGAAATTGAAAAACA-GAACTTGAAATTACCTCAGCGTG
131 ---------AAA---AAAAACAGGAA-TTGAAAATACCTCAGCGTG
* * * *
73715729 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGGAACATA-A-ATTGAAGAACA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-AAAAATAGATATT-AAAAACA
* * * *
73715792 GAAATT-AAAATTACCTCAGCGTGTGAGCCGAGGTTCAACTCACCTCT-TGTAATACGAGTTGAC
64 GAAATTGAAAA-TACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTCT-CAATACGAGTTGAC
73715855 TTTTAAAAAAAACAGGAATTGAAAATACCTCAGCGTG
127 TTTTAAAAAAAACAGGAATTGAAAATACCTCAGCGTG
*
73715892 TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-----T-G-----AAAAATA
1 T--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAATAGATATTAAAAACA
* * * * * * * * *
73715946 GGAACTAAAAATACCTCGGCTTGTG-TCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
64 GAAATTGAAAATACCTCAGCATGTGAGC-CAAGGCTCAACTCACCTCTCTCAATACGAGTTGACT
*** * * * *
73716009 TTTTTGAAAAATAGAAACTAAAAATACCTCAGCGTG
128 TTTAAAAAAAACAGGAATTGAAAATACCTCAGCGTG
* * * * *
73716045 TGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGGACAACAGAAATTAAAA
1 T--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTT-AAAAATAGATATTAAAA
* * * * *
73716110 ATAGAAATTGAAAATATCTCGGTATGTG-GCCCAAGGCTCAACTCACCTCTCGCAATA
61 ACAGAAATTGAAAATACCTCAGCATGTGAG-CCAAGGCTCAACTCACCTCTCTCAATA
73716167 TGAATTGATT
Statistics
Matches: 366, Mismatches: 45, Indels: 61
0.78 0.10 0.13
Matches are distributed among these distances:
153 69 0.19
154 50 0.14
155 10 0.03
159 1 0.00
162 1 0.00
163 26 0.07
164 3 0.01
165 41 0.11
166 3 0.01
167 51 0.14
168 1 0.00
174 14 0.04
175 91 0.25
176 5 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (163 bp):
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAATAGATATTAAAAACAGA
AATTGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTCTCAATACGAGTTGACTTTT
AAAAAAAACAGGAATTGAAAATACCTCAGCGTG
Found at i:73716058 original size:76 final size:77
Alignment explanation
Indices: 73715782--73716112 Score: 403
Period size: 77 Copynumber: 4.3 Consensus size: 77
73715772 GGAACATAAA
* * * * * * * *
73715782 TTGAAGAACAGAAATTAAAATTACCTCAGCGTGTGAGCCGAGGTTCAACTCACCTCTTGTAATAC
1 TTGAAAAACAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
73715847 GAGTTGACTTTT
66 GAGTTGACTTTT
*** * * * *
73715859 AAAAAAAACAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
73715924 GAGTTGATTTTT
66 GAGTTGACTTTT
* * * * * *
73715936 TTGAAAAATAGGAACTAAAAATACCTCGGCTTGTGTCTCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
73716001 GAGTTGA-TTTT
66 GAGTTGACTTTT
*
73716012 TTGAAAAATAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
73716077 GAGTTGATTTTTT
66 GAGTTGA-CTTTT
* * *
73716090 TTGGACAACAGAAATTAAAAATA
1 TTGAAAAACAGAAACTAAAAATA
73716113 GAAATTGAAA
Statistics
Matches: 218, Mismatches: 34, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
76 71 0.33
77 124 0.57
78 23 0.11
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (77 bp):
TTGAAAAACAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGACTTTT
Found at i:73716175 original size:91 final size:89
Alignment explanation
Indices: 73716015--73716201 Score: 257
Period size: 91 Copynumber: 2.1 Consensus size: 89
73716005 TGATTTTTTG
* * *
73716015 AAAAATAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAATAGAAACTAAAAATACCTCAGCATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAA
* *
73716080 TTGATTTTTTTTGGACAACAGAAATT
66 TTGA-TTTTTTTGAACAACA-AAAAT
* * * * * *
73716106 AAAAATAGAAATTGAAAATATCTCGGTATGTGGCCCAAGGCTCAACTCACCTCTCGCAATATGAA
1 AAAAATAGAAACTAAAAATACCTCAGCATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAA
73716171 TTGATTTTTTTGAACAACAAAAAT
66 TTGATTTTTTTGAACAACAAAAAT
73716195 AAAAATA
1 AAAAATA
73716202 TCAGGATACC
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
89 11 0.13
90 14 0.16
91 60 0.71
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27
Consensus pattern (89 bp):
AAAAATAGAAACTAAAAATACCTCAGCATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAA
TTGATTTTTTTGAACAACAAAAAT
Found at i:73723184 original size:14 final size:14
Alignment explanation
Indices: 73723165--73723192 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73723155 AGAAGTGTGG
73723165 TGGCTCTCAGTTCC
1 TGGCTCTCAGTTCC
73723179 TGGCTCTCAGTTCC
1 TGGCTCTCAGTTCC
73723193 CACCATATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.36, G:0.21, T:0.36
Consensus pattern (14 bp):
TGGCTCTCAGTTCC
Found at i:73724468 original size:12 final size:13
Alignment explanation
Indices: 73724446--73724484 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 13
73724436 TGATATGTAC
73724446 ATGCAATGAATGA
1 ATGCAATGAATGA
73724459 ATGC-ATGAATGA
1 ATGCAATGAATGA
73724471 ATGTCAAATGAATG
1 ATG-C-AATGAATG
73724485 TTAGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 11 0.48
13 5 0.22
15 7 0.30
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.26
Consensus pattern (13 bp):
ATGCAATGAATGA
Found at i:73728302 original size:20 final size:20
Alignment explanation
Indices: 73728279--73728351 Score: 51
Period size: 20 Copynumber: 3.5 Consensus size: 20
73728269 ATATACATAC
73728279 ATATATATATATATATTAAA
1 ATATATATATATATATTAAA
*
73728299 ATATAAACATAATAATAGTATTAAA
1 ATAT--ATAT-AT-ATA-TATTAAA
* *
73728324 AGTATATACATA-GTATTAAA
1 A-TATATATATATATATTAAA
73728344 A-ATATATA
1 ATATATATA
73728352 CATAATATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
18 6 0.14
20 12 0.29
22 4 0.10
23 4 0.10
24 5 0.12
25 8 0.19
26 3 0.07
ACGTcount: A:0.56, C:0.03, G:0.04, T:0.37
Consensus pattern (20 bp):
ATATATATATATATATTAAA
Found at i:73728352 original size:20 final size:20
Alignment explanation
Indices: 73728313--73728355 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
73728303 AAACATAATA
*
73728313 ATAGTATTAAAAGTATATAC
1 ATAGTATTAAAAATATATAC
73728333 ATAGTATTAAAAATATATAC
1 ATAGTATTAAAAATATATAC
73728353 ATA
1 ATA
73728356 ATATATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (20 bp):
ATAGTATTAAAAATATATAC
Found at i:73728448 original size:47 final size:44
Alignment explanation
Indices: 73728337--73728448 Score: 104
Period size: 47 Copynumber: 2.5 Consensus size: 44
73728327 ATATACATAG
*
73728337 TATTAAAAATATATACATAAT-ATATACATTTAGAAAAATAATAA
1 TATTAAAAATATATA-ATAATAATATACATATAGAAAAATAATAA
* * * *
73728381 TATTAAAAACA-ACTATTAATAATACTACATAAATATAAACAT-ATATA
1 TATTAAAAATATA-TAATAATAATA-TACAT--ATAGAAAAATAATA-A
73728428 TATTAAAAATATATAATAATA
1 TATTAAAAATATATAATAATA
73728449 TTAAAAATAC
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
43 5 0.09
44 15 0.28
45 5 0.09
46 3 0.06
47 25 0.46
48 1 0.02
ACGTcount: A:0.59, C:0.06, G:0.01, T:0.34
Consensus pattern (44 bp):
TATTAAAAATATATAATAATAATATACATATAGAAAAATAATAA
Found at i:73728466 original size:20 final size:19
Alignment explanation
Indices: 73728427--73728469 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
73728417 AAACATATAT
*
73728427 ATATTAAAAATATATAATA
1 ATATTAAAAATACATAATA
*
73728446 ATATTAAAAATACGTACATA
1 ATATTAAAAATACATA-ATA
73728466 ATAT
1 ATAT
73728470 ATATACATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (19 bp):
ATATTAAAAATACATAATA
Found at i:73728731 original size:2 final size:2
Alignment explanation
Indices: 73728724--73728763 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
73728714 TTAGTAACGC
* * *
73728724 TA TA TA TA CA TA AA CA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
73728764 CATTGAAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (2 bp):
TA
Found at i:73729150 original size:22 final size:22
Alignment explanation
Indices: 73729131--73729173 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
73729121 ATACTAATGC
73729131 TAATAAATAATAAATATAATAA
1 TAATAAATAATAAATATAATAA
*
73729153 TAAT-AGTAATAAAATATAATA
1 TAATAAATAAT-AAATATAATA
73729174 GTATACATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
TAATAAATAATAAATATAATAA
Found at i:73731897 original size:185 final size:182
Alignment explanation
Indices: 73731512--73731930 Score: 640
Period size: 185 Copynumber: 2.3 Consensus size: 182
73731502 CTTAACCGGC
* * * * *
73731512 TAGCATCATTATTATTTATATTGTAATTTATTTTATAATAATATTCATATGGTGGATTTAGTTGT
1 TAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGGATTTAATTGT
* * *
73731577 CACGTTATTTTATATTAATGGTAGGAAAGTAGGGACATTGAAAATAAATCGTAATGTGTTATTTC
66 CACATTATTTTATACTAATGGTAGGAAAGTAGGGACATTGAAAATAAATCGCAATGTGTTATTTC
*
73731642 TTACAAAAATTTAATTTCAAATTAGATTAATGCAATATGAGGAGACTTAATT
131 TTACAAAAATTTAATTTCAAATTACATTAATGCAATATGAGGAGACTTAATT
* * *
73731694 TAGTATGATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGGTTTTATAATT
1 TAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGG-ATT-TAATT
* *
73731759 GTTACATTATTTTATACTAATGGTAGGAAAGTAGGGACATTGAAAATAAATCGCAATGTGTTGTT
64 GTCACATTATTTTATACTAATGGTAGGAAAGTAGGGACATTGAAAATAAATCGCAATGTGTT-AT
* * * *
73731824 TTTTTATAATAATTTAATTTCAAATTACATTATTGCAATATGAGGAGACTTAATT
128 TTCTTACAAAAATTTAATTTCAAATTACATTAATGCAATATGAGGAGACTTAATT
*
73731879 TAGCATCATTATTATTTATATTGTGATTTGTTTTATCGTAATATACATATGG
1 TAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGG
73731931 ATTTATAATT
Statistics
Matches: 213, Mismatches: 21, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
182 49 0.23
183 2 0.01
184 62 0.29
185 100 0.47
ACGTcount: A:0.34, C:0.06, G:0.15, T:0.44
Consensus pattern (182 bp):
TAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGGATTTAATTGT
CACATTATTTTATACTAATGGTAGGAAAGTAGGGACATTGAAAATAAATCGCAATGTGTTATTTC
TTACAAAAATTTAATTTCAAATTACATTAATGCAATATGAGGAGACTTAATT
Found at i:73734349 original size:19 final size:20
Alignment explanation
Indices: 73734314--73734359 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
73734304 CAGAAAATGA
73734314 TTTCTGGAAAATAATTTACT
1 TTTCTGGAAAATAATTTACT
*
73734334 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATAATTTACT
73734353 TTTCTGG
1 TTTCTGG
73734360 TGTTTAGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATAATTTACT
Found at i:73734465 original size:20 final size:20
Alignment explanation
Indices: 73734440--73734479 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
73734430 CTGTTTTTAC
73734440 ATATATTAATAAAATTATAT
1 ATATATTAATAAAATTATAT
73734460 ATATATTAATAAAATTATAT
1 ATATATTAATAAAATTATAT
73734480 TTTAAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATATTAATAAAATTATAT
Found at i:73738155 original size:16 final size:16
Alignment explanation
Indices: 73738134--73738167 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
73738124 AACTCAATGG
73738134 AAGAACCTATTAACCT
1 AAGAACCTATTAACCT
73738150 AAGAACCTATTAACCT
1 AAGAACCTATTAACCT
73738166 AA
1 AA
73738168 CCTGATGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.24, G:0.06, T:0.24
Consensus pattern (16 bp):
AAGAACCTATTAACCT
Found at i:73740293 original size:29 final size:28
Alignment explanation
Indices: 73740259--73740354 Score: 115
Period size: 26 Copynumber: 3.4 Consensus size: 28
73740249 TTTTTTAAAA
73740259 AAATTTGTTTTATTATTATTATTCATTTT
1 AAATTT-TTTTATTATTATTATTCATTTT
*
73740288 AAATTTTTTTA-TA-TATTATTCATGTT
1 AAATTTTTTTATTATTATTATTCATTTT
* *
73740314 AAAATTTTTTATATATTATTATTTATTTT
1 AAATTTTTTTAT-TATTATTATTCATTTT
73740343 AAAGTTCTTTTT
1 AAA-TT-TTTTT
73740355 CCACATATTA
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
26 22 0.39
27 2 0.04
28 7 0.12
29 20 0.35
30 1 0.02
31 5 0.09
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (28 bp):
AAATTTTTTTATTATTATTATTCATTTT
Found at i:73740304 original size:26 final size:27
Alignment explanation
Indices: 73740259--73740380 Score: 113
Period size: 30 Copynumber: 4.3 Consensus size: 27
73740249 TTTTTTAAAA
73740259 AAATTTGTTTTATTATTATTATTCATTTT
1 AAATTT-TTTTA-TATTATTATTCATTTT
*
73740288 AAATTTTTTTATA-TATTATTCATGTTA
1 AAATTTTTTTATATTATTATTCAT-TTT
*
73740315 AAATTTTTTATATATTATTATTTATTTT
1 AAATTTTTT-TATATTATTATTCATTTT
* *
73740343 AAAGTTCTTTTTCCACA-TATTATTTATTTT
1 AAA-TT-TTTTT--ATATTATTATTCATTTT
*
73740373 AAACTTTT
1 AAATTTTT
73740381 ATACGTTATT
Statistics
Matches: 81, Mismatches: 5, Indels: 15
0.80 0.05 0.15
Matches are distributed among these distances:
26 10 0.12
27 13 0.16
28 17 0.21
29 19 0.23
30 20 0.25
31 2 0.02
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.61
Consensus pattern (27 bp):
AAATTTTTTTATATTATTATTCATTTT
Found at i:73740756 original size:27 final size:27
Alignment explanation
Indices: 73740707--73740761 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
73740697 ATTTATTATC
*
73740707 ATTTTAAATTTGTTTTTACATTTTGTTT
1 ATTTTAAATTTGTTTATACATTTT-TTT
73740735 ATTTT-AATTTGCTTTATA-ATTTTTTT
1 ATTTTAAATTTG-TTTATACATTTTTTT
73740761 A
1 A
73740762 ATTGTTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 4 0.16
27 11 0.44
28 10 0.40
ACGTcount: A:0.24, C:0.04, G:0.05, T:0.67
Consensus pattern (27 bp):
ATTTTAAATTTGTTTATACATTTTTTT
Found at i:73743027 original size:2 final size:2
Alignment explanation
Indices: 73743015--73743064 Score: 66
Period size: 2 Copynumber: 25.5 Consensus size: 2
73743005 TGTACCTTAT
* *
73743015 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
73743056 CA TA TA TA T
1 TA TA TA TA T
73743065 GATGATTATA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (2 bp):
TA
Found at i:73744415 original size:27 final size:27
Alignment explanation
Indices: 73744385--73744451 Score: 66
Period size: 27 Copynumber: 2.4 Consensus size: 27
73744375 AGTCTTTTTA
73744385 TTTTTATTTTATAGAATTTAA-TTTAAT
1 TTTTTATTTTATA-AATTTAAGTTTAAT
*
73744412 TTTTTAAAATTTA-AAATTTAAGTTTAAT
1 TTTTT--ATTTTATAAATTTAAGTTTAAT
* *
73744440 TATTAATTTTAT
1 TTTTTATTTTAT
73744452 TATTTTTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
26 5 0.16
27 12 0.38
28 10 0.31
29 5 0.16
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (27 bp):
TTTTTATTTTATAAATTTAAGTTTAAT
Found at i:73744488 original size:17 final size:15
Alignment explanation
Indices: 73744458--73744491 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
73744448 TTATTATTTT
73744458 TTTATTAAATTTAAA
1 TTTATTAAATTTAAA
73744473 TTTATTATATATTTAAA
1 TTTATTA-A-ATTTAAA
73744490 TT
1 TT
73744492 ATATGATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 1 0.06
17 9 0.53
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTATTAAATTTAAA
Found at i:73747225 original size:58 final size:58
Alignment explanation
Indices: 73747156--73747274 Score: 238
Period size: 58 Copynumber: 2.1 Consensus size: 58
73747146 TATTTTTGCA
73747156 TGTCCTTGTGGTTCTTTATGCAGTTTATGCAGTTCTTTGATTGCTCTTATATGTTCTT
1 TGTCCTTGTGGTTCTTTATGCAGTTTATGCAGTTCTTTGATTGCTCTTATATGTTCTT
73747214 TGTCCTTGTGGTTCTTTATGCAGTTTATGCAGTTCTTTGATTGCTCTTATATGTTCTT
1 TGTCCTTGTGGTTCTTTATGCAGTTTATGCAGTTCTTTGATTGCTCTTATATGTTCTT
73747272 TGT
1 TGT
73747275 AGGCTCGTGA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 61 1.00
ACGTcount: A:0.12, C:0.15, G:0.19, T:0.54
Consensus pattern (58 bp):
TGTCCTTGTGGTTCTTTATGCAGTTTATGCAGTTCTTTGATTGCTCTTATATGTTCTT
Found at i:73747579 original size:24 final size:24
Alignment explanation
Indices: 73747547--73747594 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
73747537 AAACTTAAAC
73747547 CAGCAGTGATCTGTGACTCAAAGT
1 CAGCAGTGATCTGTGACTCAAAGT
*
73747571 CAGCAGTGATTTGTGACTCAAAGT
1 CAGCAGTGATCTGTGACTCAAAGT
73747595 TTTTGTTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (24 bp):
CAGCAGTGATCTGTGACTCAAAGT
Found at i:73748673 original size:101 final size:102
Alignment explanation
Indices: 73748495--73748681 Score: 243
Period size: 101 Copynumber: 1.8 Consensus size: 102
73748485 AGACATGAGT
* * * *
73748495 TGCTAATGAGATTCTGTTTTTTAACTTACTGTTTCCATGTTGGGGCTTCGTAACCATCTATCTGT
1 TGCTAATGAGATTCTCTCTTTTAACTCACTGTATCCATGTTGGGGCTTCGTAACCATCTATCTGT
* *
73748560 GGTAACACACACTGCCTTTGTGGTAAAACACGCAAGC
66 GGTAAAACACACTGCATTTGTGGTAAAACACGCAAGC
* * * *
73748597 TGCTAATGAGATTC-CTCTTTTAACTCACTGATAT-CATGTTGGGGCTTGGTAACCGTCTTTTTG
1 TGCTAATGAGATTCTCTCTTTTAACTCACTG-TATCCATGTTGGGGCTTCGTAACCATCTATCTG
* *
73748660 TTGTAAAATACACTGCATTTGT
65 TGGTAAAACACACTGCATTTGT
73748682 TCAGGTTTTC
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
101 56 0.78
102 16 0.22
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (102 bp):
TGCTAATGAGATTCTCTCTTTTAACTCACTGTATCCATGTTGGGGCTTCGTAACCATCTATCTGT
GGTAAAACACACTGCATTTGTGGTAAAACACGCAAGC
Found at i:73751553 original size:20 final size:20
Alignment explanation
Indices: 73751515--73751554 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
73751505 AATTACAATC
73751515 AATTAAATAATAATTTTAAGA
1 AATTAAATAAT-ATTTTAAGA
73751536 AATTAAATTAAT-TTTTAAG
1 AATTAAA-TAATATTTTAAG
73751555 TCATCTCTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (20 bp):
AATTAAATAATATTTTAAGA
Found at i:73755017 original size:15 final size:15
Alignment explanation
Indices: 73754999--73755054 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
73754989 ATCCACTGCC
73754999 TCATCATCATCGTCG
1 TCATCATCATCGTCG
*
73755014 TCATCATCATCCTCG
1 TCATCATCATCGTCG
*
73755029 TC--C-TCATCGTCC
1 TCATCATCATCGTCG
*
73755041 TCATCTTCATCGTC
1 TCATCATCATCGTC
73755055 ATCCTCTTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
12 9 0.26
13 1 0.03
14 1 0.03
15 24 0.69
ACGTcount: A:0.16, C:0.39, G:0.09, T:0.36
Consensus pattern (15 bp):
TCATCATCATCGTCG
Found at i:73768239 original size:13 final size:13
Alignment explanation
Indices: 73768223--73768248 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73768213 TTGAGATAAT
73768223 GCTGTGTAGTGTA
1 GCTGTGTAGTGTA
73768236 GCTGTGTAGTGTA
1 GCTGTGTAGTGTA
73768249 AGTTCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.38, T:0.38
Consensus pattern (13 bp):
GCTGTGTAGTGTA
Found at i:73772821 original size:21 final size:20
Alignment explanation
Indices: 73772797--73772835 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
73772787 TATTATAAAA
73772797 TTTATTTATTTTTAATAAAGT
1 TTTA-TTATTTTTAATAAAGT
*
73772818 TTTATTCTTTTTAATAAA
1 TTTATTATTTTTAATAAA
73772836 AAAAAAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTATTATTTTTAATAAAGT
Found at i:73779345 original size:66 final size:66
Alignment explanation
Indices: 73779269--73779644 Score: 207
Period size: 66 Copynumber: 5.7 Consensus size: 66
73779259 AGCTGTCACG
* * * *
73779269 TCCTTCGCTTCCTTCGCTTTTTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCATTGTAGT
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCACTGTAGT
73779334 A
66 A
* ** * * * ** * * * * *
73779335 TCTTTTGCTTCCTTAGCTTTCTGTGCTGCGTAGTCTGTAAACTCGGAAGCCTTCTGCGCTGTCGT
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCACTGTAGT
73779400 A
66 A
* * * * * * **
73779401 TCCTTTGCTCCCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGC-TTTTCCAATTGCGG
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCC-ACTGTAG
*
73779465 CA
65 TA
* ** * * * * ** ***
73779467 TCCTTTGCATCCTTAGCTTTCTGTGCTGCATAATCTGTGTACTCAGAAGCTTTTTGGGCTGTAGT
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCACTGTAGT
73779532 A
66 A
* * * * * * * * * ** *
73779533 T-CTCTTGCCTCCTTGGCTTTCTGAGCTGTATAATCCTTATATTCAGCCGCTTTCCCCATTGTAG
1 TCCT-TTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCACTGTAG
*
73779597 CA
65 TA
* * ** * *
73779599 TCCTTTGCATCCTTAGTTTTCTGTGCTGCATAGCCTGTATACTCGG
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGG
73779645 AAGCCTTCTG
Statistics
Matches: 222, Mismatches: 84, Indels: 8
0.71 0.27 0.03
Matches are distributed among these distances:
65 6 0.03
66 210 0.95
67 6 0.03
ACGTcount: A:0.14, C:0.27, G:0.18, T:0.41
Consensus pattern (66 bp):
TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCACTGTAGT
A
Found at i:73779420 original size:132 final size:132
Alignment explanation
Indices: 73779269--73779654 Score: 463
Period size: 132 Copynumber: 2.9 Consensus size: 132
73779259 AGCTGTCACG
* * * * * * * *
73779269 TCCTTCGCTTCCTTCGCTTTTTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCATTGTAGT
1 TCCTTTGCTCCCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGCTTTTTCCATTGTAGC
* * * * *
73779334 ATCTTTTGCTTCCTTAGCTTTCTGTGCTGCGTAGTCTGTAAACTCGGAAGCCTTCTGCGCTGTCG
66 ATCCTTTGCATCCTTAGCTTTCTGTGCTGCATAGTCTGTATACTCGGAAGCCTTCTGCGCTGTAG
73779399 TA
131 TA
**
73779401 TCCTTTGCTCCCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGC-TTTTCCAATTGCGG
1 TCCTTTGCTCCCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGCTTTTTCC-ATTGTAG
* * * * * *
73779465 CATCCTTTGCATCCTTAGCTTTCTGTGCTGCATAATCTGTGTACTCAGAAGCTTTTTGGGCTGTA
65 CATCCTTTGCATCCTTAGCTTTCTGTGCTGCATAGTCTGTATACTCGGAAGCCTTCTGCGCTGTA
73779530 GTA
130 GTA
* * * * **
73779533 T-CTCTTGC-CTCCTTGGCTTTCTGAGCTGTATAATCCTTATATTCAGCCGCTTTCCCCATTGTA
1 TCCT-TTGCTC-CCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGCTTTTTCCATTGTA
* *
73779596 GCATCCTTTGCATCCTTAGTTTTCTGTGCTGCATAGCCTGTATACTCGGAAGCCTTCTG
64 GCATCCTTTGCATCCTTAGCTTTCTGTGCTGCATAGTCTGTATACTCGGAAGCCTTCTG
73779655 TGCAGTGGTG
Statistics
Matches: 214, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
131 9 0.04
132 201 0.94
133 4 0.02
ACGTcount: A:0.14, C:0.27, G:0.18, T:0.41
Consensus pattern (132 bp):
TCCTTTGCTCCCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGCTTTTTCCATTGTAGC
ATCCTTTGCATCCTTAGCTTTCTGTGCTGCATAGTCTGTATACTCGGAAGCCTTCTGCGCTGTAG
TA
Found at i:73779605 original size:198 final size:199
Alignment explanation
Indices: 73779467--73779912 Score: 652
Period size: 198 Copynumber: 2.3 Consensus size: 199
73779457 AATTGCGGCA
* *
73779467 TCCTTTGCATCCTTAGCTTTCTGTGCT-GCATAATCTGTGTACTCAGAAGCTTTTTGGGCTGTAG
1 TCCTTTGCATCCTTAGCTTTCTG-GCTAGCATAATCTGTATACTCAGAAGCCTTTTGGGCTGTAG
*
73779531 TATCTCTTGCCTCCTTGGCTTTCT-GAGCTGTATAATCCTTATATTCAGCCGCTTTCCCCATTGT
65 TATCTCTTGCCTCCTTGGCTTTCTCG-GCGGTATAATCCTTATATTCAGCCGCTTTCCCCATTGT
* *
73779595 AGCATCCTTTGCAT-CCTTAGTTTTCTGTGCTGCATAG-CCTGTATACTCGGAAGCCTTCTGTGC
129 AGCATCCTTTGC-TCCCTTAGTTTTCTGTGCTGCATAGTCCTGTATACTCAGAAGCCTTCTGTCC
73779658 AGTGGTG
193 AGTGGTG
* * * * *
73779665 TCTTTTGCGTCCTTAGCTTTCTGGGTAGCGTAATCTGTATACTCAGAAGCCTTTTGGGCTGTGGT
1 TCCTTTGCATCCTTAGCTTTCTGGCTAGCATAATCTGTATACTCAGAAGCCTTTTGGGCTGTAGT
*
73779730 ATCTCTTGCCTCCTTGGCTTTCTCGGCGGTATAATCCTTATATTCAGTCGCTTTCCCCATTGTAG
66 ATCTCTTGCCTCCTTGGCTTTCTCGGCGGTATAATCCTTATATTCAGCCGCTTTCCCCATTGTAG
* * * * *
73779795 CATCCTTTGCACCCTTAGTTTTCTGTGCTGCATAGT-CTGTATACTCGGAAGCCTTTTGTGCTGT
131 CATCCTTTGCTCCCTTAGTTTTCTGTGCTGCATAGTCCTGTATACTCAGAAGCCTTCTGTCCAGT
73779859 GGTG
196 GGTG
* *
73779863 TCTTTTGCGTCCTTAGCTTTCTGGGC-AGCATAATCTGTATACTCAGAAGC
1 TCCTTTGCATCCTTAGCTTTCT-GGCTAGCATAATCTGTATACTCAGAAGC
73779913 TTTACCTGTT
Statistics
Matches: 229, Mismatches: 14, Indels: 10
0.91 0.06 0.04
Matches are distributed among these distances:
197 2 0.01
198 224 0.98
199 3 0.01
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.39
Consensus pattern (199 bp):
TCCTTTGCATCCTTAGCTTTCTGGCTAGCATAATCTGTATACTCAGAAGCCTTTTGGGCTGTAGT
ATCTCTTGCCTCCTTGGCTTTCTCGGCGGTATAATCCTTATATTCAGCCGCTTTCCCCATTGTAG
CATCCTTTGCTCCCTTAGTTTTCTGTGCTGCATAGTCCTGTATACTCAGAAGCCTTCTGTCCAGT
GGTG
Found at i:73779686 original size:66 final size:65
Alignment explanation
Indices: 73779470--73779912 Score: 254
Period size: 66 Copynumber: 6.7 Consensus size: 65
73779460 TGCGGCATCC
* * * * * *
73779470 TTTGCATCCTTAGCTTTCTGTGCTGCATAATCTGTGTACTCAGAAGCTTTTTGGGCTGTAGTATC
1 TTTGCATCCTTAGCTTTCTG-GCTGCATAATCTGTATACTCAGAAGCCTTTTGTGCAGTGGTGTC
73779535 T
65 T
* * * * * ** *** *
73779536 CTTGCCTCCTTGGCTTTCTGAGCTGTATAATCCT-TATATTCAGCCG-C-TTTCCCCA-TTGTAG
1 TTTGCATCCTTAGCTTTCTG-GCTGCATAAT-CTGTATACTCAGAAGCCTTTTGTGCAGTGGT-G
*
73779597 CATCC
63 --TCT
* ** * *
73779602 TTTGCATCCTTAGTTTTCTGTGCTGCATAGCCTGTATACTCGGAAGCCTTCTGTGCAGTGGTGTC
1 TTTGCATCCTTAGCTTTCTG-GCTGCATAATCTGTATACTCAGAAGCCTTTTGTGCAGTGGTGTC
73779667 T
65 T
* * * * * *
73779668 TTTGCGTCCTTAGCTTTCTGGGTAGCGTAATCTGTATACTCAGAAGCCTTTTGGGCTGTGGTATC
1 TTTGCATCCTTAGCTTTCTGGCT-GCATAATCTGTATACTCAGAAGCCTTTTGTGCAGTGGTGTC
73779733 T
65 T
* * * * * * ** *** *
73779734 CTTGCCTCCTTGGCTTTCTCGGCGGTATAATCCT-TATATTCAGTCG-C-TTTCCCCA-TTGTAG
1 TTTGCATCCTTAGCTTTCT-GGCTGCATAAT-CTGTATACTCAGAAGCCTTTTGTGCAGTGGT-G
*
73779795 CATCC
63 --TCT
* * * * *
73779800 TTTGCACCCTTAGTTTTCTGTGCTGCATAGTCTGTATACTCGGAAGCCTTTTGTGCTGTGGTGTC
1 TTTGCATCCTTAGCTTTCTG-GCTGCATAATCTGTATACTCAGAAGCCTTTTGTGCAGTGGTGTC
73779865 T
65 T
* *
73779866 TTTGCGTCCTTAGCTTTCTGGGCAGCATAATCTGTATACTCAGAAGC
1 TTTGCATCCTTAGCTTTCT-GGCTGCATAATCTGTATACTCAGAAGC
73779913 TTTACCTGTT
Statistics
Matches: 270, Mismatches: 87, Indels: 40
0.68 0.22 0.10
Matches are distributed among these distances:
63 6 0.02
64 8 0.03
65 8 0.03
66 223 0.83
67 9 0.03
68 10 0.04
69 6 0.02
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.39
Consensus pattern (65 bp):
TTTGCATCCTTAGCTTTCTGGCTGCATAATCTGTATACTCAGAAGCCTTTTGTGCAGTGGTGTCT
Found at i:73781374 original size:28 final size:29
Alignment explanation
Indices: 73781334--73781398 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
73781324 ATTTCTCTTC
* *
73781334 TTATTTTCT-TTTTAT-GTTTTT-TAGTT
1 TTATTTTATATTTTATAGTTTTTATAATT
73781360 TTATATTTATATTTTATAGTTTTTATAATT
1 TTAT-TTTATATTTTATAGTTTTTATAATT
73781390 TTATTTTAT
1 TTATTTTAT
73781399 TTAATAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
26 4 0.12
27 4 0.12
28 6 0.18
29 11 0.33
30 8 0.24
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.72
Consensus pattern (29 bp):
TTATTTTATATTTTATAGTTTTTATAATT
Found at i:73781386 original size:22 final size:22
Alignment explanation
Indices: 73781344--73781398 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
73781334 TTATTTTCTT
* *
73781344 TTTATGTTTTTTAGTTTTAT-A
1 TTTATATTTTATAGTTTTATAA
73781365 TTTATATTTTATAGTTTTTATAA
1 TTTATATTTTATAG-TTTTATAA
73781388 TTT-TATTTTAT
1 TTTATATTTTAT
73781399 TTAATAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 12 0.40
22 14 0.47
23 4 0.13
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (22 bp):
TTTATATTTTATAGTTTTATAA
Found at i:73781435 original size:17 final size:17
Alignment explanation
Indices: 73781415--73781452 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
73781405 AAAATGGCTA
73781415 AATTGTTTAA-ATTTCAT
1 AATT-TTTAATATTTCAT
*
73781432 AATTTTTAATATTTTAT
1 AATTTTTAATATTTCAT
73781449 AATT
1 AATT
73781453 ATAAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (17 bp):
AATTTTTAATATTTCAT
Found at i:73789722 original size:3 final size:3
Alignment explanation
Indices: 73789660--73789707 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
73789650 TTCGTATCAG
73789660 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
73789708 AATTTTCAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:73791428 original size:219 final size:219
Alignment explanation
Indices: 73791049--73791488 Score: 844
Period size: 219 Copynumber: 2.0 Consensus size: 219
73791039 CTGATATTGC
73791049 ATCTAGTCTAAATCCGACTTGAGTAAAAAACTTCAATAAAATTAAACCACGATACAATTCTTGAA
1 ATCTAGTCTAAATCCGACTTGAGTAAAAAACTTCAATAAAATTAAACCACGATACAATTCTTGAA
* *
73791114 TCTTTAGTAGTATTTGTGACTTTGTTTTTGTTGAGTTGAGGTCTAAGTCTCCAACCCTCAACAAA
66 TCTTTAGTAGTATTTGTGACTTTGTTTTTGTTGAATGGAGGTCTAAGTCTCCAACCCTCAACAAA
*
73791179 AGTATCATCCTAATGGTGGGGTTTTGTCTTTCGTACTTTGAGAAGAGCTCAAAGGGGTTTTCATA
131 AGTATCATCCTAATGGTGGGGTTTTGTCTTTCGTACTTTGAGAAGAGCTCAAAGGGGTTTCCATA
73791244 AGGTTTGAACCTTAATTGGTGGAA
196 AGGTTTGAACCTTAATTGGTGGAA
73791268 ATCTAGTCTAAATCCGACTTGAGTAAAAAACTTCAATAAAATTAAACCACGATACAATTCTTGAA
1 ATCTAGTCTAAATCCGACTTGAGTAAAAAACTTCAATAAAATTAAACCACGATACAATTCTTGAA
73791333 TCTTTAGTAGTATTTGTGACTTTGTTTTTGTTGAATGGAGGTCTAAGTCTCCAACCCTCAACAAA
66 TCTTTAGTAGTATTTGTGACTTTGTTTTTGTTGAATGGAGGTCTAAGTCTCCAACCCTCAACAAA
73791398 AGTATCATCCTAATGGTGGGGTTTTGTCTTTCGTACTTTGAGAAGAGCTCAAAGGGGTTTCCATA
131 AGTATCATCCTAATGGTGGGGTTTTGTCTTTCGTACTTTGAGAAGAGCTCAAAGGGGTTTCCATA
*
73791463 AGGTTTGAACCTTGATTGGTGGAA
196 AGGTTTGAACCTTAATTGGTGGAA
73791487 AT
1 AT
73791489 ATGGCCTTCA
Statistics
Matches: 217, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
219 217 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (219 bp):
ATCTAGTCTAAATCCGACTTGAGTAAAAAACTTCAATAAAATTAAACCACGATACAATTCTTGAA
TCTTTAGTAGTATTTGTGACTTTGTTTTTGTTGAATGGAGGTCTAAGTCTCCAACCCTCAACAAA
AGTATCATCCTAATGGTGGGGTTTTGTCTTTCGTACTTTGAGAAGAGCTCAAAGGGGTTTCCATA
AGGTTTGAACCTTAATTGGTGGAA
Found at i:73799532 original size:33 final size:33
Alignment explanation
Indices: 73799490--73799558 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
73799480 TTGCTTTAAG
*
73799490 AATGTTAATGTAGGTATTGATTAGTTATGTTGT
1 AATGTTAATGCAGGTATTGATTAGTTATGTTGT
73799523 AATGTTAATGCAGGTATTGATTAGTTATGTTGT
1 AATGTTAATGCAGGTATTGATTAGTTATGTTGT
73799556 AAT
1 AAT
73799559 AGCTTATAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.46
Consensus pattern (33 bp):
AATGTTAATGCAGGTATTGATTAGTTATGTTGT
Found at i:73800935 original size:31 final size:31
Alignment explanation
Indices: 73800900--73800963 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
73800890 TTCATCATAG
73800900 AGTAAATTACACCCAAGGTCACTCAAATATT
1 AGTAAATTACACCCAAGGTCACTCAAATATT
* * *
73800931 AGTAAATTGCGCCCAAGGTCACTCAACTATT
1 AGTAAATTACACCCAAGGTCACTCAAATATT
73800962 AG
1 AG
73800964 CAAGTTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (31 bp):
AGTAAATTACACCCAAGGTCACTCAAATATT
Found at i:73809198 original size:32 final size:32
Alignment explanation
Indices: 73809130--73809203 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
73809120 ATAATTAAGC
* *
73809130 TTAAATTTTAAAAATTAAAAAAATAAAAAAAA
1 TTAAATTTTAAAAAATAAAAAAACAAAAAAAA
* * **
73809162 TTAAATTTTAAAAAATAAAAATACAAAGAATT
1 TTAAATTTTAAAAAATAAAAAAACAAAAAAAA
73809194 TTAAATTTTA
1 TTAAATTTTA
73809204 TTTATTTATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (32 bp):
TTAAATTTTAAAAAATAAAAAAACAAAAAAAA
Found at i:73811526 original size:27 final size:28
Alignment explanation
Indices: 73811470--73811539 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
73811460 AAACTTGTAC
73811470 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
73811498 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
73811525 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73811540 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:73811550 original size:27 final size:27
Alignment explanation
Indices: 73811470--73811551 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
73811460 AAACTTGTAC
* *
73811470 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
73811498 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
73811525 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
73811552 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:73819544 original size:27 final size:28
Alignment explanation
Indices: 73819488--73819557 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
73819478 AAACTTGTAC
73819488 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
73819516 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
73819543 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73819558 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:73819568 original size:27 final size:27
Alignment explanation
Indices: 73819488--73819569 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
73819478 AAACTTGTAC
* *
73819488 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
73819516 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
73819543 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
73819570 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:73826649 original size:2 final size:2
Alignment explanation
Indices: 73826642--73826670 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
73826632 AATTTAAAAT
73826642 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73826671 TTAACATGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73832182 original size:7 final size:7
Alignment explanation
Indices: 73832170--73832202 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
73832160 TCAACTAAAG
73832170 AAATTCC
1 AAATTCC
73832177 AAATTCC
1 AAATTCC
73832184 AAATTCC
1 AAATTCC
73832191 AAATTCC
1 AAATTCC
73832198 AAATT
1 AAATT
73832203 TATTTATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (7 bp):
AAATTCC
Found at i:73834163 original size:21 final size:22
Alignment explanation
Indices: 73834134--73834175 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
73834124 AGTTTTCAAG
73834134 AACAGAAATAAAT-AAAATTTTT
1 AACAGAAAT-AATCAAAATTTTT
73834156 AACA-AAATAATCAAAATTTT
1 AACAGAAATAATCAAAATTTT
73834176 ATTCTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.16
21 12 0.63
22 4 0.21
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
AACAGAAATAATCAAAATTTTT
Found at i:73836296 original size:12 final size:12
Alignment explanation
Indices: 73836279--73836303 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73836269 AAAGCAATGA
73836279 TAGTTTTAATTT
1 TAGTTTTAATTT
73836291 TAGTTTTAATTT
1 TAGTTTTAATTT
73836303 T
1 T
73836304 TAATTTCTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TAGTTTTAATTT
Found at i:73840145 original size:2 final size:2
Alignment explanation
Indices: 73840140--73840170 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
73840130 AAAAAAATTG
73840140 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73840171 ACAAATGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73843980 original size:26 final size:24
Alignment explanation
Indices: 73843942--73843994 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
73843932 ATTTTATCAA
73843942 TAATACTAATTAAAACAACATATTAT
1 TAATACTAATT-AAA-AACATATTAT
** *
73843968 TAATACTTTTTAAAAATATATTAT
1 TAATACTAATTAAAAACATATTAT
73843992 TAA
1 TAA
73843995 GCCATTTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 12 0.50
25 3 0.12
26 9 0.38
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.42
Consensus pattern (24 bp):
TAATACTAATTAAAAACATATTAT
Found at i:73845481 original size:4 final size:4
Alignment explanation
Indices: 73845474--73845498 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
73845464 TCTTATAAAC
73845474 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
73845499 CGCGTCACTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:73850183 original size:37 final size:37
Alignment explanation
Indices: 73850112--73850183 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
73850102 TTTAAATATA
* **
73850112 TATATATATTTTATTTTATTTTAATATTTAATAATTT
1 TATACATATTTTATTTTATTAAAATATTTAATAATTT
*
73850149 TATACATATTTTA-TTTATTAAAATTTTTATATAAT
1 TATACATATTTTATTTTATTAAAATATTTA-ATAAT
73850184 CATCTTAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 13 0.43
37 17 0.57
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (37 bp):
TATACATATTTTATTTTATTAAAATATTTAATAATTT
Found at i:73852567 original size:12 final size:12
Alignment explanation
Indices: 73852550--73852575 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73852540 CAAATATTAG
73852550 CTTATTAATTGT
1 CTTATTAATTGT
73852562 CTTATTAATTGT
1 CTTATTAATTGT
73852574 CT
1 CT
73852576 AAGTTCAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.12, G:0.08, T:0.58
Consensus pattern (12 bp):
CTTATTAATTGT
Found at i:73865336 original size:35 final size:35
Alignment explanation
Indices: 73865297--73865389 Score: 161
Period size: 35 Copynumber: 2.7 Consensus size: 35
73865287 CGTTCGTGAC
*
73865297 CCCTTTGAGAATTGGAGCTAGTGATATGTATTCAA
1 CCCTTTGAGAATTAGAGCTAGTGATATGTATTCAA
73865332 CCCTTTGAGAATTAGAGCTAGTGATATGTATTCAA
1 CCCTTTGAGAATTAGAGCTAGTGATATGTATTCAA
*
73865367 CTCTTTGAGAATTAGAG-TAGTGA
1 CCCTTTGAGAATTAGAGCTAGTGA
73865390 CATATCTAGA
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
34 6 0.11
35 50 0.89
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (35 bp):
CCCTTTGAGAATTAGAGCTAGTGATATGTATTCAA
Found at i:73872842 original size:2 final size:2
Alignment explanation
Indices: 73872835--73872861 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
73872825 AATACTCAAT
73872835 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
73872862 CAATTTCTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73880500 original size:88 final size:87
Alignment explanation
Indices: 73880384--73880682 Score: 289
Period size: 88 Copynumber: 3.3 Consensus size: 87
73880374 AAACCTTATC
* * * * *
73880384 TCCCTGAAGTTGTAATGGAGCAGGTTAAAGTTAAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
1 TCCCTGAAGTTGCAGTGGAACAGATTAAAGTTAAAGTCTTATCTCCCTGAAGTTGCAGTGGAGAA
73880449 GACTGAAGATAGCGAATCTCATT
66 GA-TGAAGATAGCGAATCTCATT
*
73880472 TCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATAAATAGATCTTATCTCTCTGAAGTTGC
1 TCCCTGAAGTTGCAGTGGAACAGATTAAAG---T---T-AA-AG-TCTTATCTCCCTGAAGTTGC
* ** * * * *
73880537 AGT--A-AAGAAGATTATAGCAAACCTTATC
57 AGTGGAGAAGATGAAGATAGCGAATCTCATT
* * * * * * *
73880565 TCCCTGAAGTAGCAGTGGAGCTGGTTGAAGTTAAAGTCTTATCTCCCTTAAGTTGCAGTGGAGTA
1 TCCCTGAAGTTGCAGTGGAACAGATTAAAGTTAAAGTCTTATCTCCCTGAAGTTGCAGTGGAGAA
73880630 GATTGAAGATAGCGAATCTCATT
66 GA-TGAAGATAGCGAATCTCATT
*
73880653 TCCCTGAAGTTGCAGTGGAACAAATTAAAG
1 TCCCTGAAGTTGCAGTGGAACAGATTAAAG
73880683 CTATAAATTA
Statistics
Matches: 164, Mismatches: 34, Indels: 26
0.73 0.15 0.12
Matches are distributed among these distances:
84 21 0.13
85 2 0.01
86 3 0.02
87 4 0.02
88 63 0.38
90 1 0.01
91 1 0.01
93 38 0.23
94 4 0.02
95 3 0.02
96 2 0.01
97 22 0.13
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (87 bp):
TCCCTGAAGTTGCAGTGGAACAGATTAAAGTTAAAGTCTTATCTCCCTGAAGTTGCAGTGGAGAA
GATGAAGATAGCGAATCTCATT
Found at i:73880602 original size:181 final size:180
Alignment explanation
Indices: 73880374--73880715 Score: 553
Period size: 181 Copynumber: 1.9 Consensus size: 180
73880364 TGAAACCACT
* *
73880374 AAACCTTATCTCCCTGAAGTTGTAATGGAGCAGGTTAAAGTTAAAGTCTTATCTCCCTGAAGTTG
1 AAACCTTATCTCCCTGAAGTAGCAATGGAGCAGGTTAAAGTTAAAGTCTTATCTCCCTGAAGTTG
*
73880439 CAGTGGAGCAGACTGAAGATAGCGAATCTCATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT
66 CAGTGGAGCAGACTGAAGATAGCGAATCTCATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCT
73880504 ATAAA-TAAATAGATCTTAT-CTCTCTGAAGTTGCAGTAAAGAAGATTATAGC
131 ATAAATTAAA-A-ATCTTATAC-CTCTGAAGTTGCAGTAAAGAAGATTATAGC
* * * *
73880555 AAACCTTATCTCCCTGAAGTAGCAGTGGAGCTGGTTGAAGTTAAAGTCTTATCTCCCTTAAGTTG
1 AAACCTTATCTCCCTGAAGTAGCAATGGAGCAGGTTAAAGTTAAAGTCTTATCTCCCTGAAGTTG
* *
73880620 CAGTGGAGTAGATTGAAGATAGCGAATCTCATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCT
66 CAGTGGAGCAGACTGAAGATAGCGAATCTCATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCT
*
73880685 ATAAATTACAAATCTTATACCTCTGAAGTTG
131 ATAAATTAAAAATCTTATACCTCTGAAGTTG
73880716 TATTAGGTCG
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
180 18 0.12
181 128 0.86
182 3 0.02
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.30
Consensus pattern (180 bp):
AAACCTTATCTCCCTGAAGTAGCAATGGAGCAGGTTAAAGTTAAAGTCTTATCTCCCTGAAGTTG
CAGTGGAGCAGACTGAAGATAGCGAATCTCATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCT
ATAAATTAAAAATCTTATACCTCTGAAGTTGCAGTAAAGAAGATTATAGC
Found at i:73880860 original size:45 final size:44
Alignment explanation
Indices: 73880748--73880864 Score: 144
Period size: 44 Copynumber: 2.6 Consensus size: 44
73880738 CATGGCGAAT
** **
73880748 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCATTAAA
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAAACAGCAAA
* * * * *
73880792 CTTATCTCCCTAAAATTGCAGTGGAGCAGGTTAAAAATAGCAAA
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAAACAGCAAA
73880836 CTTTATCTCCCTGAAGTTGTAGTGGAGCA
1 C-TTATCTCCCTGAAGTTGTAGTGGAGCA
73880865 TGTTGAAGTT
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
44 36 0.60
45 24 0.40
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAAACAGCAAA
Found at i:73882330 original size:88 final size:88
Alignment explanation
Indices: 73882172--73882332 Score: 234
Period size: 88 Copynumber: 1.8 Consensus size: 88
73882162 GAAGATAACA
* * *
73882172 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAACCTTGTCTCCCTGAATATG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTATCTCCCTGAATATG
*
73882237 TAGTAGAGCAGGATGAAGTTACT
66 CAGTAGAGCAGGATGAAGTTACT
* ** *
73882260 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAGTCTTATCTCTCTGAAGT-T
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTATCTCCCTGAA-TAT
73882324 GCAGTAGAG
65 GCAGTAGAG
73882333 TGGATCGAAG
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
88 63 0.98
89 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTATCTCCCTGAATATG
CAGTAGAGCAGGATGAAGTTACT
Found at i:73882343 original size:44 final size:44
Alignment explanation
Indices: 73882169--73882332 Score: 188
Period size: 44 Copynumber: 3.7 Consensus size: 44
73882159 ACTGAAGATA
* * *
73882169 ACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCT
* * * * *
73882213 ATAAACCTTGTCTCCCTGAA-TATGTAGTAGAGCAGGA-TGAAGTT
1 ACAAATCTTATCTCCCTGAAGT-TGCAGTAGAGCA-GATTGAAGCT
* *
73882257 ACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCT
* *
73882301 ACAAGTCTTATCTCTCTGAAGTTGCAGTAGAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTAGAG
73882333 TGGATCGAAG
Statistics
Matches: 97, Mismatches: 19, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
43 3 0.03
44 91 0.94
45 3 0.03
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (44 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCT
Found at i:73882362 original size:44 final size:44
Alignment explanation
Indices: 73882168--73882372 Score: 116
Period size: 44 Copynumber: 4.7 Consensus size: 44
73882158 GACTGAAGAT
* * * **
73882168 AACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGC
1 AACAAGTCCTATCTCTCTGAAGTTGCAGTAGAGCAGATCGAAGC
* * * * * * *
73882212 TATAA-ACCTTGTCTCCCTGAA-TATGTAGTAGAGCAGGAT-GAAGT
1 AACAAGTCC-TATCTCTCTGAAGT-TGCAGTAGAGCA-GATCGAAGC
* * * * *
73882256 TACTAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
1 AAC-AAGTCCTATCTCTCTGAAGTTGCAGTAGAGCAGATCGAAGC
* * **
73882300 TACAAGTCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGAAGC
1 AACAAGTCCTATCTCTCTGAAGTTGCAGTAGAGCAGATCGAAGC
*
73882344 AACAATTCCTATAC-CTCTGAA-TATGCAGT
1 AACAAGTCCTAT-CTCTCTGAAGT-TGCAGT
73882373 GGTTTGGAAT
Statistics
Matches: 127, Mismatches: 25, Indels: 18
0.75 0.15 0.11
Matches are distributed among these distances:
43 8 0.06
44 111 0.87
45 8 0.06
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
AACAAGTCCTATCTCTCTGAAGTTGCAGTAGAGCAGATCGAAGC
Found at i:73882364 original size:88 final size:88
Alignment explanation
Indices: 73882172--73882374 Score: 209
Period size: 88 Copynumber: 2.3 Consensus size: 88
73882162 GAAGATAACA
* * *
73882172 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAACCTTGTCTCCCTGAATATG
1 AATCCTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTATCTCCCTGAATATG
* **
73882237 TAGTAGAGCAGGATGAAGTTACT
66 CAGTAGAGCAGGATGAAGCAACT
* * * ** *
73882260 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAGTCTTATCTCTCTGAAGT-T
1 AATCCTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTATCTCCCTGAA-TAT
*
73882324 GCAGTAGAG-TGGATCGAAGCAAC-
65 GCAGTAGAGCAGGAT-GAAGCAACT
73882347 AATTCCTATAC-CTCTGAA-TATGCAGTGG
1 AA-TCCTAT-CTCTCTGAAGT-TGCAGTGG
73882375 TTTGGAATGG
Statistics
Matches: 97, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
87 7 0.07
88 88 0.91
89 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (88 bp):
AATCCTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTATCTCCCTGAATATG
CAGTAGAGCAGGATGAAGCAACT
Done.