Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 255 of 292
Found at i:73883734 original size:4 final size:4
Alignment explanation
Indices: 73883718--73883833 Score: 85
Period size: 4 Copynumber: 28.5 Consensus size: 4
73883708 CTTTAATCCT
* *
73883718 TTTA TTTA CTTA TTTA TTTA TGATTA TTTA TTTA TTTA CTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA T--TTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * * *
73883768 TTCA CTTGA -TTA TTTA TTCA -TTA TTCT- TTACA TTTA TTCA TTTA TTTG
1 TTTA -TTTA TTTA TTTA TTTA TTTA TT-TA TT-TA TTTA TTTA TTTA TTTA
*
73883816 TTTG TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TT
73883834 CACATATCAT
Statistics
Matches: 89, Mismatches: 16, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
3 4 0.04
4 75 0.84
5 6 0.07
6 4 0.04
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:73883926 original size:3 final size:3
Alignment explanation
Indices: 73883918--73883985 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
73883908 TGTTTGTGCC
73883918 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
73883966 ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT AT
73883986 CATTTTTTAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:73884092 original size:4 final size:4
Alignment explanation
Indices: 73884083--73884121 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
73884073 TTTTTCTTAA
* *
73884083 TATT TATT TATT GTATC TATT TATT TATT CATT TATT TA
1 TATT TATT TATT -TATT TATT TATT TATT TATT TATT TA
73884122 CACATTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 27 0.90
5 3 0.10
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (4 bp):
TATT
Found at i:73884137 original size:3 final size:3
Alignment explanation
Indices: 73884131--73884179 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
73884121 ACACATTTTT
* * * * *
73884131 TTA TTA TTC TTA TTC TTA TTC TTA TTA TTA TTA TTA TTG TTA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
73884179 T
1 T
73884180 ATTTTTATCT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:73884149 original size:12 final size:12
Alignment explanation
Indices: 73884131--73884179 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
73884121 ACACATTTTT
73884131 TTATTATTCTTA
1 TTATTATTCTTA
*
73884143 TTCTTATTCTTA
1 TTATTATTCTTA
*
73884155 TTATTATTATTA
1 TTATTATTCTTA
* *
73884167 TTGTTATTGTTA
1 TTATTATTCTTA
73884179 T
1 T
73884180 ATTTTTATCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.67
Consensus pattern (12 bp):
TTATTATTCTTA
Found at i:73884262 original size:25 final size:25
Alignment explanation
Indices: 73884229--73884287 Score: 118
Period size: 25 Copynumber: 2.4 Consensus size: 25
73884219 ATTAAAATTT
73884229 TTTTACTTAACATTATGAATATCTA
1 TTTTACTTAACATTATGAATATCTA
73884254 TTTTACTTAACATTATGAATATCTA
1 TTTTACTTAACATTATGAATATCTA
73884279 TTTTACTTA
1 TTTTACTTA
73884288 CTTATTTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.34, C:0.12, G:0.03, T:0.51
Consensus pattern (25 bp):
TTTTACTTAACATTATGAATATCTA
Found at i:73886085 original size:46 final size:46
Alignment explanation
Indices: 73886028--73886300 Score: 422
Period size: 46 Copynumber: 5.9 Consensus size: 46
73886018 TTTGACATGA
* * * *
73886028 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
73886074 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
73886120 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
73886166 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
73886212 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
73886258 TGCCATAGTATCTTTCAACCATAGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
73886301 AAAAGCACAC
Statistics
Matches: 211, Mismatches: 15, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 207 0.98
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:73888433 original size:18 final size:17
Alignment explanation
Indices: 73888412--73888445 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
73888402 ATACATTTAA
73888412 TATAACAAATATAAATAT
1 TATAACAAATA-AAATAT
73888430 TATAACAAATAAAATA
1 TATAACAAATAAAATA
73888446 CAGAAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (17 bp):
TATAACAAATAAAATAT
Found at i:73889540 original size:15 final size:15
Alignment explanation
Indices: 73889520--73889549 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73889510 TTGGGTTTAG
73889520 TTGGGCTAATGGGTA
1 TTGGGCTAATGGGTA
*
73889535 TTGGGCTGATGGGTA
1 TTGGGCTAATGGGTA
73889550 AATTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.43, T:0.33
Consensus pattern (15 bp):
TTGGGCTAATGGGTA
Found at i:73889605 original size:25 final size:24
Alignment explanation
Indices: 73889554--73889608 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
73889544 TGGGTAAATT
* *
73889554 TGGGTTTAATTTGTATTGGGTTTG
1 TGGGTTTAATTGGTATTGGGTTAG
73889578 TGGGTTTAATTGGGT-TATGGGTTAG
1 TGGGTTTAATT-GGTAT-TGGGTTAG
73889603 TGGGTT
1 TGGGTT
73889609 AAGGGGTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.13, C:0.00, G:0.38, T:0.49
Consensus pattern (24 bp):
TGGGTTTAATTGGTATTGGGTTAG
Found at i:73890487 original size:55 final size:56
Alignment explanation
Indices: 73890404--73890578 Score: 282
Period size: 57 Copynumber: 3.1 Consensus size: 56
73890394 TAAAAGCAGA
* *
73890404 TTTTGAAAAACA-GAAATTAAAGGGCTCAACTCACCTTTCGCAATATGAGTTGA-T
1 TTTTGAAAAACATGAATTTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
73890458 TTTTGAAAAACATGAATTTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 TTTTGAAAAACATGAATTTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
* *
73890515 TTTTGAAAAACATAAATTGAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 TTTTGAAAAACATGAATTTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATT
73890571 TTTTGAAA
1 TTTTGAAA
73890579 GGTAGAAATT
Statistics
Matches: 112, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
54 12 0.11
55 38 0.34
56 10 0.09
57 52 0.46
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (56 bp):
TTTTGAAAAACATGAATTTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATT
Found at i:73890726 original size:170 final size:167
Alignment explanation
Indices: 73890515--73890833 Score: 471
Period size: 167 Copynumber: 1.9 Consensus size: 167
73890505 GAGTTGATTT
* * *
73890515 TTTTGAAAAACATAAATTGAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAG
1 TTTTGAAAAACAGAAATTGAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAA
* * * * *
73890580 GTAGAAATTGAAAACACAAAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTC
65 ATAGAAACT-AAAA-ACAAAAATTGAAAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTC
* * *
73890644 GCAATGTGAGTTGATTTTTTGAAACTTGATTTGAAAAGTAGA
127 GCAATATGAATTGA-ATTTTGAAACTTGATTTGAAAAGTAGA
73890686 TTTTGAAAAACAGAAATT-AAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 TTTTGAAAAACAGAAATTGAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
*
73890750 TAGAAACTAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAA
66 TAGAAACTAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAA
73890815 TATGAATTGAATTTTGAAA
131 TATGAATTGAATTTTGAAA
73890834 AACAGAAATT
Statistics
Matches: 135, Mismatches: 12, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
166 8 0.06
167 52 0.39
168 8 0.06
169 16 0.12
170 34 0.25
171 17 0.13
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (167 bp):
TTTTGAAAAACAGAAATTGAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
TAGAAACTAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAA
TATGAATTGAATTTTGAAACTTGATTTGAAAAGTAGA
Found at i:73890773 original size:81 final size:84
Alignment explanation
Indices: 73890517--73890775 Score: 217
Period size: 81 Copynumber: 3.1 Consensus size: 84
73890507 GTTGATTTTT
* * * **
73890517 TTGAAAAACATAAATTGAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGGT
1 TTGAAAAACAGAAATTCAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAT
*
73890582 AGAAATTGAAAACACAAAAA
66 AGAAATTGAAAA-ACAGAAA
** *** * *
73890602 TT-AAAATTACCTCAG-CGTGTCCTGAGGCTCAACTCATCTCTCGCAATGTGAGTTGATTTTTTG
1 TTGAAAA--A---CAGAAAT-TCAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* * * ** **
73890665 -AAACTTG-ATTTGAAAAGTAGATT
60 AAAAATAGAAATTGAAAAACAGAAA
73890688 TTGAAAAACAGAAATT-AAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAT
1 TTGAAAAACAGAAATTCAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAT
*
73890751 AGAAACT-AAAAACAGAAA
66 AGAAATTGAAAAACAGAAA
73890769 TTGAAAA
1 TTGAAAA
73890776 TACCTCAGCG
Statistics
Matches: 130, Mismatches: 34, Indels: 24
0.69 0.18 0.13
Matches are distributed among these distances:
80 6 0.05
81 49 0.38
82 6 0.05
83 1 0.01
84 4 0.03
85 3 0.02
86 5 0.04
87 12 0.09
88 5 0.04
89 39 0.30
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (84 bp):
TTGAAAAACAGAAATTCAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAT
AGAAATTGAAAAACAGAAA
Found at i:73890812 original size:86 final size:87
Alignment explanation
Indices: 73890538--73890847 Score: 284
Period size: 86 Copynumber: 3.6 Consensus size: 87
73890528 AAATTGAAAG
** *
73890538 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGGTAGAAATTGAAAACACAAAAAT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAA-ACAGAAAT
*
73890603 T-AAAATTACCTCAGCGTGTCCTGA
65 TGAAAA-TACCTCAGCGTG-CCAGA
* * * * * ** **
73890627 GGCTCAACTCATCTCTCGCAATGTGAGTTGATTTTTTG-AAACTTG-ATTTGAAAAGTAGATTTT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAAACAGAAATT
** ** *
73890690 GAAAA-A---CAGAAAT-TAAAA
66 GAAAATACCTCAG-CGTGCCAGA
*
73890708 GGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATAGAAACT-AAAAACAGAAATT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAAACAGAAATT
*
73890771 GAAAATACCTCAGCGTGCCCCGA
66 GAAAATACCTCAGCGTG-CCAGA
* * *
73890794 GGCTCAACTCACCTCTCGCAATATGAATTGA-ATTTTGAAAAACAGAAATT-AAAA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAA
73890848 GGCTCAACTC
Statistics
Matches: 174, Mismatches: 37, Indels: 23
0.74 0.16 0.10
Matches are distributed among these distances:
80 6 0.03
81 49 0.28
82 6 0.03
83 1 0.01
84 1 0.01
85 4 0.02
86 55 0.32
87 12 0.07
88 4 0.02
89 36 0.21
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (87 bp):
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAAACAGAAATT
GAAAATACCTCAGCGTGCCAGA
Found at i:73890855 original size:54 final size:54
Alignment explanation
Indices: 73890793--73890896 Score: 190
Period size: 54 Copynumber: 1.9 Consensus size: 54
73890783 GCGTGCCCCG
73890793 AGGCTCAACTCACCTCTCGCAATATGAATTGAATTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAATTGAATTTTGAAAAACAGAAATTAAA
* *
73890847 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAATTGAATTTTGAAAAACAGAAAT
73890897 CAAAGTTAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.27
Consensus pattern (54 bp):
AGGCTCAACTCACCTCTCGCAATATGAATTGAATTTTGAAAAACAGAAATTAAA
Found at i:73890937 original size:140 final size:139
Alignment explanation
Indices: 73890685--73891120 Score: 629
Period size: 140 Copynumber: 3.2 Consensus size: 139
73890675 TGAAAAGTAG
73890685 ATTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 ATTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
* * *
73890750 TAGAAA-CTAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCA
66 -AGAAATC-AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
*
73890814 ATATGAATTGA
129 ATATGAGTTGA
73890825 ATTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 ATTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
*** * ** *
73890890 CAGAAATCAAAGTTAGAAATTGAAATTACCTCAGCGTATATTGAGGCTCAACTCACCTCTCGTAA
66 -AGAAATCAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
73890955 TATGAGTTGA
130 TATGAGTTGA
* * *
73890965 TTTTTGACAAACAGAAATTAAAAAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTG----
1 ATTTTGAAAAACAGAAATT-AAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
73891025 AAG-AAT-AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
65 AAGAAATCAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
73891088 TATGAGTTGA
130 TATGAGTTGA
*
73891098 TTTTTG-AAAACAGAAATTTAAAA
1 ATTTTGAAAAACAGAAA-TTAAAA
73891121 AACAAAAATT
Statistics
Matches: 270, Mismatches: 23, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
132 13 0.05
133 68 0.25
134 3 0.01
135 2 0.01
136 1 0.00
140 149 0.55
141 34 0.13
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (139 bp):
ATTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
AGAAATCAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGA
Found at i:73891177 original size:87 final size:88
Alignment explanation
Indices: 73891031--73891201 Score: 290
Period size: 87 Copynumber: 2.0 Consensus size: 88
73891021 TTTGAAGAAT
* * * *
73891031 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTACTGAGACTCAACTCACCTCTCGCAATATGAGTT
73891096 GATTTTTG-AAAACAGAAATTTA
66 GATTTTTGAAAAACAGAAATTTA
*
73891118 AAAAACAAAAATTGAAAATACCTCAGCGTGTATTGAGACTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTACTGAGACTCAACTCACCTCTCGCAATATGAGTT
73891183 GATTTTTGAAAAACAGAAA
66 GATTTTTGAAAAACAGAAA
73891202 CTAAAACATC
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
87 68 0.87
88 10 0.13
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (88 bp):
AAAAACAAAAATTGAAAATACCTCAGCGTGTACTGAGACTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGAAATTTA
Found at i:73896171 original size:47 final size:47
Alignment explanation
Indices: 73896062--73896172 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
73896052 CCGGGATAAG
*
73896062 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
73896109 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
73896156 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
73896173 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:73903398 original size:47 final size:46
Alignment explanation
Indices: 73903290--73903399 Score: 143
Period size: 47 Copynumber: 2.4 Consensus size: 46
73903280 CCGGGATAAG
*
73903290 CACATAGTGCTTCATCGGAACAAATCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCGGAACTTTAACAGTATAGTA
* * *
73903336 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAAT-CGGAACTTTAACAGTA-TAGTA
73903383 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
73903400 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
46 24 0.44
47 29 0.53
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (46 bp):
CACATAGTGCTTCATCGGAACAAATCGGAACTTTAACAGTATAGTA
Found at i:73913015 original size:27 final size:27
Alignment explanation
Indices: 73912980--73913036 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
73912970 GTGCAAGATA
* * * *
73912980 TATATATATATAATATGATGTTAAGAG
1 TATACATATAAAATATAATGTTAAAAG
73913007 TATACATATAAAATATAATGTTAAAAG
1 TATACATATAAAATATAATGTTAAAAG
73913034 TAT
1 TAT
73913037 GTATACATAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.49, C:0.02, G:0.11, T:0.39
Consensus pattern (27 bp):
TATACATATAAAATATAATGTTAAAAG
Found at i:73913553 original size:36 final size:37
Alignment explanation
Indices: 73913475--73913563 Score: 94
Period size: 35 Copynumber: 2.5 Consensus size: 37
73913465 ATATATAGTA
*
73913475 ATAATA-ATAAATATAACAACAATATTGAAAATACAT
1 ATAATATATAAATATAACAACAATATTGAAAAGACAT
* * * *
73913511 A-CATATATATATATAAC-ATAATATTTAAAAGACAT
1 ATAATATATAAATATAACAACAATATTGAAAAGACAT
*
73913546 ATAATATAACAAATATAA
1 ATAATAT-ATAAATATAA
73913564 ATATTATAAC
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
35 19 0.45
36 15 0.36
37 8 0.19
ACGTcount: A:0.60, C:0.08, G:0.02, T:0.30
Consensus pattern (37 bp):
ATAATATATAAATATAACAACAATATTGAAAAGACAT
Found at i:73913571 original size:18 final size:17
Alignment explanation
Indices: 73913550--73913583 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
73913540 AGACATATAA
73913550 TATAACAAATATAAATAT
1 TATAACAAATA-AAATAT
73913568 TATAACAAATAAAATA
1 TATAACAAATAAAATA
73913584 CAGAAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (17 bp):
TATAACAAATAAAATAT
Found at i:73916685 original size:11 final size:11
Alignment explanation
Indices: 73916669--73916727 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
73916659 CTTTATATAC
73916669 TAATAAAATAA
1 TAATAAAATAA
*
73916680 TAATAATATAA
1 TAATAAAATAA
**
73916691 TAATATAATATCT
1 TAATA-AA-ATAA
* *
73916704 TATTAAAATAT
1 TAATAAAATAA
73916715 TAATAAAATAA
1 TAATAAAATAA
73916726 TA
1 TA
73916728 TTTATCTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
11 29 0.76
12 3 0.08
13 6 0.16
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:73917481 original size:23 final size:23
Alignment explanation
Indices: 73917450--73917494 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
73917440 CATTTATTCA
*
73917450 TTATTTATACATA-AAACACCAAT
1 TTATATATA-ATACAAACACCAAT
*
73917473 TTATATATAATACTAACACCAA
1 TTATATATAATACAAACACCAA
73917495 ACACATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (23 bp):
TTATATATAATACAAACACCAAT
Found at i:73925555 original size:3 final size:3
Alignment explanation
Indices: 73925547--73925572 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
73925537 ATTAATTGGG
73925547 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
73925573 CAGTACCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:73927339 original size:29 final size:29
Alignment explanation
Indices: 73927307--73927382 Score: 70
Period size: 29 Copynumber: 2.6 Consensus size: 29
73927297 AATATTTTTA
73927307 AATTATTAATATAAAT-TATTTACAAATTT
1 AATTATTAATATAAATATATTTA-AAATTT
* *
73927336 AATT-TAATATATAAATCATATTTATAATTT
1 AATTATTA-ATATAAAT-ATATTTAAAATTT
73927366 -A-TAGTTAATATAAATAT
1 AATTA-TTAATATAAATAT
73927383 TCTGAAATCC
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
28 5 0.13
29 21 0.54
30 7 0.18
31 6 0.15
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (29 bp):
AATTATTAATATAAATATATTTAAAATTT
Found at i:73927374 original size:31 final size:29
Alignment explanation
Indices: 73927315--73927377 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 29
73927305 TAAATTATTA
*
73927315 ATATAAATTATTTACAAATTTAATTTAAT
1 ATATAAATTATTTACAAATTTAAGTTAAT
*
73927344 ATATAAATCATATTTA-TAATTTATAGTTAAT
1 ATATAAAT--TATTTACAAATTTA-AGTTAAT
73927375 ATA
1 ATA
73927378 AATATTCTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 8 0.28
30 6 0.21
31 15 0.52
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.48
Consensus pattern (29 bp):
ATATAAATTATTTACAAATTTAAGTTAAT
Found at i:73929738 original size:21 final size:23
Alignment explanation
Indices: 73929696--73929738 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
73929686 ACATGCATAT
*
73929696 ATATATAAATACAAGTATTAGAA
1 ATATATAAATACAAGTAATAGAA
*
73929719 ATATAT-AATATAA-TAATAGA
1 ATATATAAATACAAGTAATAGA
73929739 GGTATACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.33
22 6 0.33
23 6 0.33
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (23 bp):
ATATATAAATACAAGTAATAGAA
Found at i:73929787 original size:11 final size:11
Alignment explanation
Indices: 73929771--73929830 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
73929761 GTAATATTAA
73929771 AAAATATATAT
1 AAAATATATAT
73929782 AAAATATATATT
1 AAAATATATA-T
*
73929794 AAAAGACTTATAT
1 AAAATA--TATAT
* *
73929807 ACAACATATAT
1 AAAATATATAT
73929818 GAAAA-ATATAT
1 -AAAATATATAT
73929829 AA
1 AA
73929831 TATTAAACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
10 2 0.05
11 21 0.51
12 9 0.22
13 5 0.12
14 4 0.10
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (11 bp):
AAAATATATAT
Found at i:73929797 original size:25 final size:25
Alignment explanation
Indices: 73929764--73929840 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
73929754 ATAACTAGTA
*
73929764 ATATTAAAAAATATATATAAAATAT
1 ATATTAAAAAATATATATAAAACAT
* *
73929789 ATATTAAAAGACT-TATATACAACAT
1 ATATTAAAA-AATATATATAAAACAT
* *
73929814 ATATGAAAAATATATAATATTAAACAT
1 ATATTAAAAA-ATAT-ATATAAAACAT
73929841 TTACATAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
24 1 0.02
25 28 0.68
26 3 0.07
27 9 0.22
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (25 bp):
ATATTAAAAAATATATATAAAACAT
Found at i:73931924 original size:68 final size:65
Alignment explanation
Indices: 73931732--73931908 Score: 185
Period size: 68 Copynumber: 2.6 Consensus size: 65
73931722 AAGTGAACTG
** * * * *
73931732 AGGCTCAACTCATTTCTCGCAATATGGGTTGATTTTTGAAACGTAGAAATTAAAAGAAGAAATTA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAAGTA-AAA-TAAAAAAAGAAATTA
73931797 GA
64 GA
* * ** * *
73931799 AGGCTCAACTCACCTCTCGCAACATGAGTTAATACTTTGAAAAGTAGATTTTGAAAAACGAAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAT-CTTTGAAAAGTA-A-AATAAAAAAAG-AAAT
73931864 TA-A
62 TAGA
73931867 AGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAA
73931909 ATTAAAAAAA
Statistics
Matches: 93, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
67 37 0.40
68 50 0.54
69 6 0.06
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (65 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAAGTAAAATAAAAAAAGAAATTAGA
Found at i:73932316 original size:54 final size:54
Alignment explanation
Indices: 73932211--73932321 Score: 127
Period size: 54 Copynumber: 2.0 Consensus size: 54
73932201 ATGTGAACCC
*
73932211 AAGGCTCAACTCACATCTCGCAATACGAGTTGATTTTGAAAAAGTAGAAATT-AA
1 AAGGCTCAACCCACATCTCGCAATACGAGTTGATTTTGAAAAAGTA-AAATTGAA
* * * * *
73932265 AAGGTTCAACCCACCTCTCGTAATATGAGTTGATTCTTGAACAACGT-AAATTGAA
1 AAGGCTCAACCCACATCTCGCAATACGAGTTGATT-TTGAA-AAAGTAAAATTGAA
73932320 AA
1 AA
73932322 CAGAAATTGA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
54 35 0.73
55 9 0.19
56 4 0.08
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (54 bp):
AAGGCTCAACCCACATCTCGCAATACGAGTTGATTTTGAAAAAGTAAAATTGAA
Found at i:73932501 original size:71 final size:71
Alignment explanation
Indices: 73932410--73932657 Score: 325
Period size: 71 Copynumber: 3.5 Consensus size: 71
73932400 ATTAAAAGGT
* *
73932410 TCAACCCACCTCTCGTAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
73932475 TGAGGC
66 TGAGGC
** ** * * *
73932481 TCAACTCACCTCTCGCAATATGAGTTGATGAACTAAAAAGCAGAAATTGAAAATACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGAT--TTTTGAAA-CATAAATTGAAATTACCTCAACGTG
* *
73932546 CCCTGAGGC
63 TCTTGAGGC
* *
73932555 TCAACTCGCTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
73932620 TGAGGC
66 TGAGGC
* * *
73932626 TCAACTTACCTCTCGCAATATGGGCTGATTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT
73932658 CTTGGAAAAC
Statistics
Matches: 147, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
71 83 0.56
72 4 0.03
73 4 0.03
74 56 0.38
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (71 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
TGAGGC
Found at i:73932778 original size:160 final size:160
Alignment explanation
Indices: 73932508--73932908 Score: 757
Period size: 160 Copynumber: 2.5 Consensus size: 160
73932498 ATATGAGTTG
* * *
73932508 ATGAACTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCGCTTCTCGCAA
1 ATGAATTAAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAA
*
73932573 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTTACCTC
66 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
73932638 TCGCAATATGGGCTGATTTTCTTGGAAAAC
131 TCGCAATATGGGCTGATTTTCTTGGAAAAC
73932668 ATGAATTAAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAA
1 ATGAATTAAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAA
73932733 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
66 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
73932798 TCGCAATATGGGCTGATTTTCTTGGAAAAC
131 TCGCAATATGGGCTGATTTTCTTGGAAAAC
73932828 ATGAATTAAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAA
1 ATGAATTAAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAA
*
73932893 TATGAGCTGATTTTTG
66 TATGAGTTGATTTTTG
73932909 GAAAAAACAA
Statistics
Matches: 236, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
160 236 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (160 bp):
ATGAATTAAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAA
TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
TCGCAATATGGGCTGATTTTCTTGGAAAAC
Found at i:73932800 original size:71 final size:71
Alignment explanation
Indices: 73932684--73932817 Score: 205
Period size: 71 Copynumber: 1.9 Consensus size: 71
73932674 TAAAAAGTAG
* * *
73932684 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
73932749 AAACAT
66 AAACAT
* * * *
73932755 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGGGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
73932818 CTTGGAAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:73935856 original size:71 final size:71
Alignment explanation
Indices: 73935628--73935872 Score: 334
Period size: 71 Copynumber: 3.5 Consensus size: 71
73935618 ATTAAAAGGT
*
73935628 TCAAC-CACCTCTCG-TATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
73935691 TGAGGC
66 TGAGGC
*** * * * *
73935697 TCAACTCACCTCTCGCAATATGAGTTGATGAACTAAAAGCAGAAATTGAAAATACCTCAGCGTG-
1 TCAACTCACCTCTCGCAATATGAGTTGAT-TTTTGAAA-CATAAATTGAAATTACCTCAACGTGT
*
73935761 CCTGAGGC
64 CTTGAGGC
*
73935769 TCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
73935834 TGAGGC
66 TGAGGC
* * *
73935840 TCAACTTACCTCTCGCAATATGGGCTGATTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
73935873 TGGAAAACAT
Statistics
Matches: 149, Mismatches: 22, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
69 5 0.03
70 31 0.21
71 52 0.35
72 39 0.26
73 22 0.15
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (71 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
TGAGGC
Found at i:73936013 original size:71 final size:70
Alignment explanation
Indices: 73935897--73936029 Score: 203
Period size: 71 Copynumber: 1.9 Consensus size: 70
73935887 TAAAAAGTAG
* * *
73935897 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG-GCTGATTTTTG
73935962 AAACAT
65 AAACAT
* * *
73935968 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGGCTGATTTT
73936030 CTTGGAAAAC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
70 8 0.14
71 48 0.86
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (70 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGGCTGATTTTTGA
AACAT
Found at i:73936019 original size:159 final size:159
Alignment explanation
Indices: 73935731--73936123 Score: 727
Period size: 159 Copynumber: 2.5 Consensus size: 159
73935721 TTGATGAACT
*
73935731 AAAAGCAGAAATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
1 AAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
*
73935795 GATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTTACCTCTCGCAATA
66 GATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
73935860 TGGGCTGATTTT-TTGGAAAACATGAATTA
131 T-GGCTGATTTTCTTGGAAAACATGAATTA
73935889 AAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
1 AAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
73935954 GATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
66 GATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
73936019 TGGCTGATTTTCTTGGAAAACATGAATTA
131 TGGCTGATTTTCTTGGAAAACATGAATTA
*
73936048 AAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGCT
1 AAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
*
73936113 GATTTTGGAAA
66 GATTTTTGAAA
73936124 AAACAAAATT
Statistics
Matches: 229, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
158 39 0.17
159 190 0.83
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (159 bp):
AAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
GATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
TGGCTGATTTTCTTGGAAAACATGAATTA
Found at i:73948495 original size:11 final size:11
Alignment explanation
Indices: 73948481--73948540 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
73948471 AGTAATATTA
73948481 AAAATATATAT
1 AAAATATATAT
73948492 AAAATATATATT
1 AAAATATATA-T
*
73948504 AAAAGACTTATAT
1 AAAATA--TATAT
* *
73948517 ACAACATATAT
1 AAAATATATAT
73948528 GAAAA-ATATAT
1 -AAAATATATAT
73948539 AA
1 AA
73948541 TATTAAACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
10 2 0.05
11 21 0.51
12 9 0.22
13 5 0.12
14 4 0.10
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (11 bp):
AAAATATATAT
Found at i:73948515 original size:25 final size:24
Alignment explanation
Indices: 73948475--73948539 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 24
73948465 ATAACTAGTA
*
73948475 ATATTAAAAATATATATAAAATAT
1 ATATTAAAAATATATATAAAACAT
*
73948499 ATATTAAAAGACT-TATATACAACAT
1 ATATTAAAA-A-TATATATAAAACAT
*
73948524 ATATGAAAAATATATA
1 ATATTAAAAATATATA
73948540 ATATTAAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
23 1 0.03
24 14 0.40
25 19 0.54
26 1 0.03
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (24 bp):
ATATTAAAAATATATATAAAACAT
Found at i:73949264 original size:12 final size:14
Alignment explanation
Indices: 73949228--73949255 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73949218 AAAAGAGAGA
73949228 AAAGGAGAGGGGAG
1 AAAGGAGAGGGGAG
73949242 AAAGGAGAGGGGAG
1 AAAGGAGAGGGGAG
73949256 GAGAGAGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (14 bp):
AAAGGAGAGGGGAG
Found at i:73950697 original size:20 final size:20
Alignment explanation
Indices: 73950672--73950711 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
73950662 CTGTTTTTAC
* *
73950672 ATATATTAATGAATTTATAT
1 ATATATTAATAAACTTATAT
73950692 ATATATTAATAAACTTATAT
1 ATATATTAATAAACTTATAT
73950712 TTTAAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (20 bp):
ATATATTAATAAACTTATAT
Found at i:73951943 original size:45 final size:45
Alignment explanation
Indices: 73951842--73951949 Score: 137
Period size: 45 Copynumber: 2.4 Consensus size: 45
73951832 AACGGTAGCA
* * * *
73951842 GTAACAGTAACAGTAGCAGTATTCAACACATAAAGTGCTGAATCT
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAGTGCTGAATCG
* *
73951887 GTAATAGTAACGGTAACAGTATTCGACACACAAAGTG-TCGAATCG
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAGTGCT-GAATCG
*
73951932 GTAACAGTAACGATAACA
1 GTAACAGTAACGGTAACA
73951950 ATAACAGTAG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 1 0.02
45 53 0.98
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (45 bp):
GTAACAGTAACGGTAACAGTATTCAACACACAAAGTGCTGAATCG
Found at i:73952239 original size:40 final size:40
Alignment explanation
Indices: 73952163--73952248 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
73952153 ATTCGTTTCA
* *
73952163 TCAGAAATTTTACAGTTCAATGCAATATACATAACAATAT
1 TCAGTAATTTTACAGTTCAATGCAATATACAAAACAATAT
* * * ** *
73952203 TGAGTAATTTTATAGTTCAATTCGGTATTCAAAACAATAT
1 TCAGTAATTTTACAGTTCAATGCAATATACAAAACAATAT
73952243 TCAGTA
1 TCAGTA
73952249 TCCCATAATT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (40 bp):
TCAGTAATTTTACAGTTCAATGCAATATACAAAACAATAT
Found at i:73953041 original size:13 final size:14
Alignment explanation
Indices: 73953020--73953066 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
73953010 TCTTTACTTT
*
73953020 TTTTGTTTC-TTTA
1 TTTTATTTCATTTA
*
73953033 TTTTATTTCATTTC
1 TTTTATTTCATTTA
*
73953047 TTTTA-TTCTTTTA
1 TTTTATTTCATTTA
73953060 TTTTATT
1 TTTTATT
73953067 AACTTAATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
13 19 0.68
14 9 0.32
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.77
Consensus pattern (14 bp):
TTTTATTTCATTTA
Found at i:73953365 original size:20 final size:20
Alignment explanation
Indices: 73953342--73953398 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
73953332 TTAATTTATT
73953342 TTTAATAATAATAATCATAA
1 TTTAATAATAATAATCATAA
*
73953362 TTTAATAAT-ATAAATTATAA
1 TTTAATAATAAT-AATCATAA
*
73953382 TTTGATAGAATAATAAT
1 TTT-A-ATAATAATAAT
73953399 AATGATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 2 0.06
20 19 0.61
21 1 0.03
22 7 0.23
23 2 0.06
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (20 bp):
TTTAATAATAATAATCATAA
Found at i:73953416 original size:17 final size:17
Alignment explanation
Indices: 73953364--73953413 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 17
73953354 AATCATAATT
*
73953364 TAATAAT-ATA-AATTA
1 TAATAATGATAGAATAA
*
73953379 TAAT-TTGATAGAATAA
1 TAATAATGATAGAATAA
73953395 TAATAATGATA-AATAA
1 TAATAATGATAGAATAA
73953411 TAA
1 TAA
73953414 ATATCTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 1 0.03
15 7 0.24
16 16 0.55
17 5 0.17
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
TAATAATGATAGAATAA
Found at i:73953579 original size:25 final size:26
Alignment explanation
Indices: 73953527--73953618 Score: 77
Period size: 25 Copynumber: 3.5 Consensus size: 26
73953517 AATTCAATTC
73953527 ATAATATGATATTTATAATTAATTAATTTA
1 ATAATAT-AT-TTTATAATTAA--AATTTA
73953557 ATAATATATTTTATAATT-AAA-TT-
1 ATAATATATTTTATAATTAAAATTTA
* *
73953580 ATATATATATTTACATAATTAAAATCTA
1 ATA-ATATATTT-TATAATTAAAATTTA
73953608 A-AA-ATATTTTA
1 ATAATATATTTTA
73953619 GATTTTAACA
Statistics
Matches: 54, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
23 3 0.06
24 11 0.20
25 14 0.26
26 4 0.07
27 3 0.06
28 10 0.19
29 2 0.04
30 7 0.13
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (26 bp):
ATAATATATTTTATAATTAAAATTTA
Found at i:73953587 original size:24 final size:25
Alignment explanation
Indices: 73953546--73953602 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
73953536 TATTTATAAT
* *
73953546 TAATTAATTTAATAATATATTT-TA
1 TAATTAAATTAATAATATATTTACA
73953570 TAATTAAATT-ATATATATATTTACA
1 TAATTAAATTAATA-ATATATTTACA
73953595 TAATTAAA
1 TAATTAAA
73953603 ATCTAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 3 0.10
24 17 0.59
25 9 0.31
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
TAATTAAATTAATAATATATTTACA
Found at i:73954926 original size:2 final size:2
Alignment explanation
Indices: 73954919--73954943 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
73954909 CATCAATTTC
73954919 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
73954944 AGCTACATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73956746 original size:25 final size:25
Alignment explanation
Indices: 73956718--73956767 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
73956708 GGAAGAGAAG
* *
73956718 ATGAAGAACGGATGAAGGAAAAGGA
1 ATGAAAAACGGAAGAAGGAAAAGGA
*
73956743 ATGAAAAACGGAAGAAGGAGAAGGA
1 ATGAAAAACGGAAGAAGGAAAAGGA
73956768 GCCTTACCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.54, C:0.04, G:0.36, T:0.06
Consensus pattern (25 bp):
ATGAAAAACGGAAGAAGGAAAAGGA
Found at i:73957173 original size:23 final size:23
Alignment explanation
Indices: 73957118--73957175 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
73957108 TATTAATTTA
*
73957118 TTTAAGTAATAATAAATATATTCT
1 TTTAA-TAATAATAAATATATTAT
*
73957142 TATTTATAA-AATAAATTATATTAT
1 T-TTAATAATAATAAA-TATATTAT
73957166 TTTAATAATA
1 TTTAATAATA
73957176 TTTTTATCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
23 12 0.43
24 13 0.46
25 3 0.11
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTTAATAATAATAAATATATTAT
Found at i:73958353 original size:22 final size:22
Alignment explanation
Indices: 73958320--73958379 Score: 95
Period size: 22 Copynumber: 2.7 Consensus size: 22
73958310 ATTTGAAATG
73958320 TTTTATAA-ATATTTTTTTAAAA
1 TTTTA-AATATATTTTTTTAAAA
*
73958342 TTTTAAATATATATTTTTAAAA
1 TTTTAAATATATTTTTTTAAAA
73958364 TTTTAAATATATTTTT
1 TTTTAAATATATTTTT
73958380 AATAATATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 2 0.06
22 33 0.94
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTAAATATATTTTTTTAAAA
Found at i:73958390 original size:20 final size:20
Alignment explanation
Indices: 73958322--73958390 Score: 77
Period size: 20 Copynumber: 3.4 Consensus size: 20
73958312 TTGAAATGTT
*
73958322 TTATAAATATTTTTTTAAAA
1 TTATAAATATATTTTTAAAA
*
73958342 TTTTAAATATATATTTTTAAAA
1 TTAT-AA-ATATATTTTTAAAA
*
73958364 TTTTAAATATATTTTTAATAA
1 TTATAAATATATTTTTAA-AA
73958385 -TATAAA
1 TTATAAA
73958391 AAAATTAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
20 20 0.47
21 6 0.14
22 17 0.40
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTATAAATATATTTTTAAAA
Found at i:73958475 original size:16 final size:16
Alignment explanation
Indices: 73958436--73958491 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
73958426 TTATTATTAG
73958436 TTTTATAATATTTTAAA
1 TTTTA-AATATTTTAAA
*
73958453 -TGT--ATATTTTAAA
1 TTTTAAATATTTTAAA
*
73958466 TTTTAAATATTTTTAA
1 TTTTAAATATTTTAAA
*
73958482 TTTTACATAT
1 TTTTAAATAT
73958492 AATTTTTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
13 10 0.31
14 2 0.06
16 20 0.62
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (16 bp):
TTTTAAATATTTTAAA
Found at i:73961963 original size:13 final size:14
Alignment explanation
Indices: 73961921--73961965 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
73961911 TAATAATGAT
73961921 TAAAGTATATTATAA
1 TAAAGTA-ATTATAA
73961936 TAATA-TAA-TATAA
1 TAA-AGTAATTATAA
73961949 TAAAGTAATTA-AA
1 TAAAGTAATTATAA
73961962 TAAA
1 TAAA
73961966 ATAAAAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 17 0.63
14 3 0.11
15 5 0.19
16 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (14 bp):
TAAAGTAATTATAA
Found at i:73964693 original size:15 final size:15
Alignment explanation
Indices: 73964652--73964697 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
73964642 GAATATCTTT
*
73964652 AAAATTAAATTT-T-
1 AAAATTATATTTATA
73964665 AAAATTAATAATTTATA
1 AAAATT-AT-ATTTATA
73964682 AAAATTATATTTATA
1 AAAATTATATTTATA
73964697 A
1 A
73964698 TTTAAAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
13 6 0.21
14 1 0.04
15 12 0.43
16 3 0.11
17 6 0.21
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
AAAATTATATTTATA
Found at i:73964698 original size:22 final size:21
Alignment explanation
Indices: 73964672--73964727 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
73964662 TTTAAAATTA
*
73964672 ATAATTTATAAAAATTATATTT
1 ATAATTTATAAAAA-TACATTT
*
73964694 ATAATTTA-AAATATACATTT
1 ATAATTTATAAAAATACATTT
*
73964714 AAAATATTATAAAA
1 ATAAT-TTATAAAA
73964728 CAAATAATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 10 0.36
21 7 0.25
22 11 0.39
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
ATAATTTATAAAAATACATTT
Found at i:73964813 original size:30 final size:30
Alignment explanation
Indices: 73964766--73964849 Score: 98
Period size: 31 Copynumber: 2.8 Consensus size: 30
73964756 TAAAAATAAT
*
73964766 ATATTTTAAAA-AAATTAAAAATACTAAAA
1 ATATTATAAAACAAATTAAAAATACTAAAA
* **
73964795 ATATTATAAAACAAATTAAAAAATATTGTAA
1 ATATTATAAAACAAATT-AAAAATACTAAAA
* *
73964826 ATATGACAAAACAAATTAAAAATA
1 ATATTATAAAACAAATTAAAAATA
73964850 TTTAAAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
29 10 0.21
30 12 0.26
31 25 0.53
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (30 bp):
ATATTATAAAACAAATTAAAAATACTAAAA
Found at i:73964863 original size:16 final size:16
Alignment explanation
Indices: 73964838--73964886 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
73964828 ATGACAAAAC
*
73964838 AAATTAAAAATATTTA
1 AAATTTAAAATATTTA
73964854 AAATTTAAAATA--T-
1 AAATTTAAAATATTTA
*
73964867 ACATTTAAAATATTATA
1 AAATTTAAAATATT-TA
73964884 AAA
1 AAA
73964887 CTAATAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
13 11 0.42
14 1 0.04
16 12 0.46
17 2 0.08
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATTTAAAATATTTA
Found at i:73964900 original size:41 final size:40
Alignment explanation
Indices: 73964696--73964904 Score: 102
Period size: 41 Copynumber: 5.2 Consensus size: 40
73964686 TTATATTTAT
*
73964696 AATTTAAAATATACATTTAAAATATTATAAAACAAATAATA
1 AATTTAAAATATACATTTAAAATATTATAAAACTAATAA-A
* * ***
73964737 AATTTGAAAGT-T-CATTTTTTAAAA-ATAATATATTTTAA-AAA
1 AATTT-AAAATATACA---TTTAAAATATTATA-AAACTAATAAA
* *
73964778 AA-TTAAAA-ATAC--TAAAAATATTATAAAACAAATTAAAA
1 AATTTAAAATATACATTTAAAATATTATAAAACTAA-T-AAA
* * * *
73964816 AATATTGTAAATATGACA---AAACAAATTA-AAAA-TATTTAA
1 AAT-TT-AAAATAT-ACATTTAAA-ATATTATAAAACTAATAAA
73964855 AATTTAAAATATACATTTAAAATATTATAAAACTAATAATA
1 AATTTAAAATATACATTTAAAATATTATAAAACTAATAA-A
73964896 AATTTAAAA
1 AATTTAAAA
73964905 GGTCATATCT
Statistics
Matches: 122, Mismatches: 22, Indels: 48
0.64 0.11 0.25
Matches are distributed among these distances:
35 8 0.07
36 8 0.07
37 6 0.05
38 12 0.10
39 16 0.13
40 12 0.10
41 23 0.19
42 20 0.16
43 17 0.14
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.34
Consensus pattern (40 bp):
AATTTAAAATATACATTTAAAATATTATAAAACTAATAAA
Found at i:73964959 original size:21 final size:21
Alignment explanation
Indices: 73964935--73964993 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
73964925 TAAATGTTTT
73964935 ATATTATTAAAAATATATTTA
1 ATATTATTAAAAATATATTTA
73964956 ATATT-TTAAAAATAATATTTA
1 ATATTATTAAAAAT-ATATTTA
*
73964977 AAATTA--AAAAATA-ATTT
1 ATATTATTAAAAATATATTT
73964994 CAAAAATTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
18 4 0.11
19 1 0.03
20 14 0.40
21 16 0.46
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
ATATTATTAAAAATATATTTA
Found at i:73964964 original size:20 final size:22
Alignment explanation
Indices: 73964935--73964991 Score: 77
Period size: 20 Copynumber: 2.8 Consensus size: 22
73964925 TAAATGTTTT
73964935 ATATTATTAAAAAT-ATATTTA
1 ATATTATTAAAAATAATATTTA
73964956 ATATT-TTAAAAATAATATTTA
1 ATATTATTAAAAATAATATTTA
*
73964977 AAATTA--AAAAATAAT
1 ATATTATTAAAAATAAT
73964992 TTCAAAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
20 17 0.52
21 16 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
ATATTATTAAAAATAATATTTA
Found at i:73964999 original size:20 final size:20
Alignment explanation
Indices: 73964963--73965002 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
73964953 TTAATATTTT
*
73964963 AAAAATAATATTTAAAATTA
1 AAAAATAATATTAAAAATTA
73964983 AAAAATAAT-TTCAAAAATTA
1 AAAAATAATATT-AAAAATTA
73965003 TATTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAATAATATTAAAAATTA
Found at i:73965039 original size:23 final size:24
Alignment explanation
Indices: 73964979--73965042 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 24
73964969 AATATTTAAA
* * *
73964979 ATTAAAAAATAATTTCAAAAATTAT
1 ATTATAAAAT-ATTTTAAAAATAAT
73965004 ATT-TAAAAT-TTTTAAAAA-AAT
1 ATTATAAAATATTTTAAAAATAAT
73965025 ATTATAAAATATTTTAAA
1 ATTATAAAATATTTTAAA
73965043 TATACATTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
21 5 0.15
22 14 0.41
23 7 0.21
24 5 0.15
25 3 0.09
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
ATTATAAAATATTTTAAAAATAAT
Found at i:73965126 original size:4 final size:4
Alignment explanation
Indices: 73965115--73965145 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
73965105 AAAAAAACTT
73965115 TAAA -AAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
73965146 AGAAAAAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:73966102 original size:13 final size:13
Alignment explanation
Indices: 73966086--73966110 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73966076 AATATGGCAT
73966086 GAAAATTTTTATA
1 GAAAATTTTTATA
73966099 GAAAATTTTTAT
1 GAAAATTTTTAT
73966111 CGATTATGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
GAAAATTTTTATA
Found at i:73966588 original size:21 final size:23
Alignment explanation
Indices: 73966564--73966610 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 23
73966554 AATATGTTGT
* *
73966564 AAATTTAAAGTTTA-TGATAGA-
1 AAATTAAAAGGTTATTGATAGAG
73966585 AAA-TAAAAGGTTATTGATAGAG
1 AAATTAAAAGGTTATTGATAGAG
73966607 AAAT
1 AAAT
73966611 CACTTTTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
20 8 0.38
21 10 0.48
22 3 0.14
ACGTcount: A:0.51, C:0.00, G:0.17, T:0.32
Consensus pattern (23 bp):
AAATTAAAAGGTTATTGATAGAG
Found at i:73966593 original size:20 final size:22
Alignment explanation
Indices: 73966570--73966610 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
73966560 TTGTAAATTT
*
73966570 AAAGTTTA-TGATAGA-AAATA
1 AAAGGTTATTGATAGAGAAATA
73966590 AAAGGTTATTGATAGAGAAAT
1 AAAGGTTATTGATAGAGAAAT
73966611 CACTTTTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.29
Consensus pattern (22 bp):
AAAGGTTATTGATAGAGAAATA
Found at i:73970340 original size:3 final size:3
Alignment explanation
Indices: 73970332--73970480 Score: 68
Period size: 3 Copynumber: 51.3 Consensus size: 3
73970322 GGGGAGAGTG
*
73970332 TTA TTA TTA TTA TTA TGT- TTA TTA -TA TTA -TA TTTA CT- TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * * **
73970375 CTG TTA CTA TTA TT- TTA -TA TATA TTTA TTA CCA TTA TTTA TT- TT-
1 TTA TTA TTA TTA TTA TTA TTA T-TA -TTA TTA TTA TTA -TTA TTA TTA
* ** *
73970419 TTA TTA TTA TTA GTA ACA -TA TTT TTA GTT- TTA TTA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
*
73970462 TTA TTA TTC TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
73970481 CATGGTACTA
Statistics
Matches: 110, Mismatches: 20, Indels: 32
0.68 0.12 0.20
Matches are distributed among these distances:
2 19 0.17
3 78 0.71
4 12 0.11
5 1 0.01
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:73971675 original size:24 final size:23
Alignment explanation
Indices: 73971631--73971675 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
73971621 AGATTAGTGG
* **
73971631 CGACTCCATTTTTGATTTTAAGT
1 CGACTCCATTTTTCAAATTAAGT
73971654 CGACTCCCATTTTTCAAATTAA
1 CGACT-CCATTTTTCAAATTAA
73971676 AAATGGTTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 5 0.28
24 13 0.72
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (23 bp):
CGACTCCATTTTTCAAATTAAGT
Found at i:73972471 original size:30 final size:30
Alignment explanation
Indices: 73972437--73972493 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
73972427 TTTAAATTAC
73972437 ATTTTAA-CTCTTAAAAATAATAAAAATTTG
1 ATTTTAACCT-TTAAAAATAATAAAAATTTG
* *
73972467 ATTTTATCCTTTAAAAATTATAAAAAT
1 ATTTTAACCTTTAAAAATAATAAAAAT
73972494 ATAGGTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (30 bp):
ATTTTAACCTTTAAAAATAATAAAAATTTG
Found at i:73983748 original size:7 final size:7
Alignment explanation
Indices: 73983731--73983767 Score: 65
Period size: 7 Copynumber: 5.1 Consensus size: 7
73983721 ATACATATAT
73983731 TTTTATTA
1 TTTT-TTA
73983739 TTTTTTA
1 TTTTTTA
73983746 TTTTTTA
1 TTTTTTA
73983753 TTTTTTA
1 TTTTTTA
73983760 TTTTTTA
1 TTTTTTA
73983767 T
1 T
73983768 ATTTGGAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 25 0.86
8 4 0.14
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTTA
Found at i:73985890 original size:22 final size:21
Alignment explanation
Indices: 73985847--73985898 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
73985837 ATAACATGAA
* *
73985847 ATATAAATACATAAAAAAATT
1 ATATAAAAAAATAAAAAAATT
73985868 AT-TAAAAAAATAATAAAAGATT
1 ATATAAAAAAATAA-AAAA-ATT
73985890 ATATAAAAA
1 ATATAAAAA
73985899 CATTATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 9 0.35
21 6 0.23
22 5 0.19
23 6 0.23
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (21 bp):
ATATAAAAAAATAAAAAAATT
Found at i:73985903 original size:13 final size:12
Alignment explanation
Indices: 73985860--73985906 Score: 53
Period size: 11 Copynumber: 4.0 Consensus size: 12
73985850 TAAATACATA
73985860 AAAAAATTAT-T
1 AAAAAATTATAT
*
73985871 AAAAAAATA-AT
1 AAAAAATTATAT
*
73985882 AAAAGATTATAT
1 AAAAAATTATAT
73985894 AAAAACATTATAT
1 AAAAA-ATTATAT
73985907 TAAATATGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (12 bp):
AAAAAATTATAT
Found at i:73990601 original size:43 final size:43
Alignment explanation
Indices: 73990553--73990707 Score: 163
Period size: 43 Copynumber: 3.6 Consensus size: 43
73990543 GCGCTGCAAA
* *
73990553 AAACGCCGCTAAAGACCATAACCTTTAGCGGCGCTTTTCCCGA-
1 AAACGCCGCTAAAGAACATAACCTTTAGCGGCGCTTTTCTC-AC
* * * * * *
73990596 AAACGCTGCTAAA-AACCATGACCTTTAGCTGCACTTTTTTTAC
1 AAACGCCGCTAAAGAA-CATAACCTTTAGCGGCGCTTTTCTCAC
* *
73990639 AAACGCCACTACAGAACA-AACCTTTAGCGGCGCTTTTCTCAC
1 AAACGCCGCTAAAGAACATAACCTTTAGCGGCGCTTTTCTCAC
* *
73990681 AAACGTCGCTAAAGAATATAACCTTTA
1 AAACGCCGCTAAAGAACATAACCTTTA
73990708 AAAAATATAT
Statistics
Matches: 88, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
42 35 0.40
43 51 0.58
44 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATAACCTTTAGCGGCGCTTTTCTCAC
Found at i:73990728 original size:20 final size:20
Alignment explanation
Indices: 73990705--73990742 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
73990695 AATATAACCT
73990705 TTAAAAAATATATATTTTTA
1 TTAAAAAATATATATTTTTA
* *
73990725 TTAAATAATATTTATTTT
1 TTAAAAAATATATATTTT
73990743 CTATATTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTAAAAAATATATATTTTTA
Found at i:73995343 original size:17 final size:18
Alignment explanation
Indices: 73995310--73995343 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73995300 CATTTCTTAA
73995310 ATAATTTAAACTATATTG
1 ATAATTTAAACTATATTG
*
73995328 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
73995344 AAAACAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTG
Found at i:73995577 original size:27 final size:26
Alignment explanation
Indices: 73995547--73995601 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
73995537 TTTCCAACAG
73995547 TAAACCCTA-AACCTAAACCCCAAACTA
1 TAAA-CCTATAACCTAAACCCCAAA-TA
* *
73995574 TAAACCTATATCCTAAACCCTAAATA
1 TAAACCTATAACCTAAACCCCAAATA
73995600 TA
1 TA
73995602 TATATTACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (26 bp):
TAAACCTATAACCTAAACCCCAAATA
Found at i:73995597 original size:20 final size:20
Alignment explanation
Indices: 73995547--73995597 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
73995537 TTTCCAACAG
73995547 TAAACCCTAAACCTAAACCC
1 TAAACCCTAAACCTAAACCC
* ** * *
73995567 CAAACTATAAACCTATATCC
1 TAAACCCTAAACCTAAACCC
73995587 TAAACCCTAAA
1 TAAACCCTAAA
73995598 TATATATATT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (20 bp):
TAAACCCTAAACCTAAACCC
Found at i:73995782 original size:14 final size:14
Alignment explanation
Indices: 73995765--73995803 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
73995755 GTAAAACAAA
*
73995765 AAACTACAAACTCT
1 AAACCACAAACTCT
*
73995779 AAACCATAAACTCT
1 AAACCACAAACTCT
*
73995793 AAACCAAAAAC
1 AAACCACAAAC
73995804 AATAAACATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.15
Consensus pattern (14 bp):
AAACCACAAACTCT
Found at i:73996603 original size:41 final size:41
Alignment explanation
Indices: 73996505--73996609 Score: 165
Period size: 41 Copynumber: 2.6 Consensus size: 41
73996495 CTTTTTTGCG
* * * *
73996505 GCGTTTTTCCAAAAGCACCACTAAAACCACGATCTATAGCG
1 GCGTTTTTCCAAAAGCGCCGCTAAAACCACGACCTATAGCA
*
73996546 GCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATAGCA
1 GCGTTTTTCCAAAAGCGCCGCTAAAACCACGACCTATAGCA
73996587 GCGTTTTTCCAAAAGCGCCGCTA
1 GCGTTTTTCCAAAAGCGCCGCTA
73996610 TTGTTCAGTT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (41 bp):
GCGTTTTTCCAAAAGCGCCGCTAAAACCACGACCTATAGCA
Found at i:73996640 original size:41 final size:41
Alignment explanation
Indices: 73996595--73996673 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
73996585 CAGCGTTTTT
* * *
73996595 CCAAAAGCGCCGCTATTGTTCAGTTTTTAACGGTGTTTGGA
1 CCAAAAACGCCGCTATTGCTCAGTTTTTAACGGCGTTTGGA
*
73996636 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCGTTT
1 CCAAAAACGCCGCTATTGCTCAGTTTTTAACGGCGTTT
73996674 TATTGCAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.33
Consensus pattern (41 bp):
CCAAAAACGCCGCTATTGCTCAGTTTTTAACGGCGTTTGGA
Found at i:73996800 original size:15 final size:15
Alignment explanation
Indices: 73996781--73996828 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
73996771 AAAAGAAAAT
73996781 AAAATTATGAAAA-A
1 AAAATTATGAAAAGA
*
73996795 AGAAATTTTATTAAAAGA
1 A-AAA--TTATGAAAAGA
73996813 AAAATTATGAAAAGA
1 AAAATTATGAAAAGA
73996828 A
1 A
73996829 CAAAAGACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
14 1 0.04
15 14 0.50
17 11 0.39
18 2 0.07
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (15 bp):
AAAATTATGAAAAGA
Found at i:73996978 original size:20 final size:20
Alignment explanation
Indices: 73996940--73996987 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
73996930 TAAATTCTAA
* **
73996940 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAAATAATT
73996960 AAAGATAAATAAAAATAATT
1 AAAGATAAATAAAAATAATT
73996980 AAA-ATAAA
1 AAAGATAAA
73996988 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAAATAATT
Found at i:73997084 original size:5 final size:5
Alignment explanation
Indices: 73997036--73997067 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
73997026 TAATTATCCT
73997036 AATATA AATAA AATAA AATAA AATAA AATAA A
1 AATA-A AATAA AATAA AATAA AATAA AATAA A
73997068 GTCTTCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:74002394 original size:43 final size:43
Alignment explanation
Indices: 74002333--74002418 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
74002323 AAACCAAATC
74002333 TGCAATGTAAAATGTAATAGCGAGCATTCACCATCTCATCTAA
1 TGCAATGTAAAATGTAATAGCGAGCATTCACCATCTCATCTAA
74002376 TGCAATGTAAAATGTAATAGCGAGCATTCACCATCTCATCTAA
1 TGCAATGTAAAATGTAATAGCGAGCATTCACCATCTCATCTAA
74002419 CTTCAAACAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (43 bp):
TGCAATGTAAAATGTAATAGCGAGCATTCACCATCTCATCTAA
Found at i:74010626 original size:13 final size:13
Alignment explanation
Indices: 74010590--74010627 Score: 60
Period size: 12 Copynumber: 3.0 Consensus size: 13
74010580 CAACAACACG
74010590 AAAAATAAATAGT
1 AAAAATAAATAGT
*
74010603 AGAAA-AAATAGT
1 AAAAATAAATAGT
74010615 AAAAATAAATAGT
1 AAAAATAAATAGT
74010628 GTAATACATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (13 bp):
AAAAATAAATAGT
Found at i:74011783 original size:3 final size:3
Alignment explanation
Indices: 74011777--74011815 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
74011767 TTTTGTGCCT
* *
74011777 TTA TTA TTA TTG TTA TTA TTG TTA TTA TTA TTA TCTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TT
74011816 TATTTATTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:74018843 original size:26 final size:25
Alignment explanation
Indices: 74018814--74018919 Score: 68
Period size: 26 Copynumber: 4.0 Consensus size: 25
74018804 TTAGAATAGG
* *
74018814 TAATATGGGCCAAAGTTTGAAATAAA
1 TAATATGGG-AAAAGTTTAAAATAAA
*
74018840 TAATATACGGGAAAAGTTTAAAATGAA
1 TAATAT--GGGAAAAGTTTAAAATAAA
** * * *
74018867 TAATATGTAAAATAATTTAAGATAAT
1 TAATATGGGAAA-AGTTTAAAATAAA
** *
74018893 TAATATATGAATGAGTTTAAAATAAA
1 TAATATGGGAA-AAGTTTAAAATAAA
74018919 T
1 T
74018920 GTTATGTAAA
Statistics
Matches: 61, Mismatches: 15, Indels: 8
0.73 0.18 0.10
Matches are distributed among these distances:
25 4 0.07
26 35 0.57
27 19 0.31
28 3 0.05
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (25 bp):
TAATATGGGAAAAGTTTAAAATAAA
Found at i:74019075 original size:26 final size:26
Alignment explanation
Indices: 74019045--74019113 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
74019035 AAAGTAAATA
74019045 ATAAAACAA-TTTAAAATGAAA-AATG
1 ATAAAACAAGTTTAAAAT-AAATAATG
*
74019070 CATAAAGCAAGTTTAAAATAAATAATG
1 -ATAAAACAAGTTTAAAATAAATAATG
* *
74019097 -TAAAAGAATTTTAAAAT
1 ATAAAACAAGTTTAAAAT
74019114 CTATATTACA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 14 0.38
26 11 0.30
27 12 0.32
ACGTcount: A:0.59, C:0.04, G:0.09, T:0.28
Consensus pattern (26 bp):
ATAAAACAAGTTTAAAATAAATAATG
Found at i:74019474 original size:21 final size:20
Alignment explanation
Indices: 74019421--74019474 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
74019411 CAATAACTTA
*
74019421 AAATATAAAATAATTTGAAAT
1 AAATAT-AAATAATTTGAAAG
*
74019442 AAATATATAATAATTTTTAAAG
1 AAATATA-AATAA-TTTGAAAG
*
74019464 AATTATAAATA
1 AAATATAAATA
74019475 TCTAAAAAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 1 0.04
21 15 0.54
22 12 0.43
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (20 bp):
AAATATAAATAATTTGAAAG
Found at i:74021040 original size:6 final size:5
Alignment explanation
Indices: 74020995--74021053 Score: 70
Period size: 5 Copynumber: 12.0 Consensus size: 5
74020985 ATCCTAAATT
*
74020995 AATAA AATAA AATAA AATAA AA-ATA AATAA AA-AT AATAA AACT-A AATAA
1 AATAA AATAA AATAA AATAA AATA-A AATAA AATAA AATAA AA-TAA AATAA
74021044 AATAA AATAA
1 AATAA AATAA
74021054 TATCTTCTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
4 5 0.11
5 40 0.85
6 2 0.04
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:74021340 original size:13 final size:13
Alignment explanation
Indices: 74021322--74021346 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74021312 GTCTTACTCG
74021322 CACACATATATCA
1 CACACATATATCA
74021335 CACACATATATC
1 CACACATATATC
74021347 GAAATCACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (13 bp):
CACACATATATCA
Found at i:74025116 original size:11 final size:11
Alignment explanation
Indices: 74025096--74025136 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
74025086 ATTTTTTTAA
74025096 ATTA-TATTTT
1 ATTATTATTTT
74025106 ATTATTATTTT
1 ATTATTATTTT
*
74025117 ATTATTATTTC
1 ATTATTATTTT
74025128 ATGTATTAT
1 AT-TATTAT
74025137 ATAAGGAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
10 4 0.14
11 18 0.64
12 6 0.21
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:74026472 original size:13 final size:13
Alignment explanation
Indices: 74026451--74026483 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74026441 TTTAGTTAAA
*
74026451 TTAGTTAATTAGT
1 TTAGATAATTAGT
74026464 TTAGATAATTAGT
1 TTAGATAATTAGT
74026477 TTA-ATAA
1 TTAGATAA
74026484 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:74027131 original size:19 final size:19
Alignment explanation
Indices: 74027102--74027191 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
74027092 ATAATCTTCA
74027102 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74027120 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74027139 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
74027156 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74027174 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
74027192 AGATATGATT
Statistics
Matches: 68, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
16 1 0.01
17 15 0.22
18 20 0.29
19 32 0.47
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:74027133 original size:35 final size:38
Alignment explanation
Indices: 74027102--74027198 Score: 152
Period size: 35 Copynumber: 2.7 Consensus size: 38
74027092 ATAATCTTCA
74027102 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
74027139 ATGATAT--AATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
74027174 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATATGCAATCTTAGATATGATATG
74027199 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 0, Indels: 9
0.86 0.00 0.14
Matches are distributed among these distances:
35 23 0.41
36 18 0.32
37 14 0.25
38 1 0.02
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (38 bp):
ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:74027165 original size:54 final size:52
Alignment explanation
Indices: 74027090--74027191 Score: 177
Period size: 54 Copynumber: 1.9 Consensus size: 52
74027080 TCATATGGAA
74027090 ATATAATCTTCAATGATTGCAATCTTAGATATGATATGCAATCTTAGATATG
1 ATATAATCTTCAATGATTGCAATCTTAGATATGATATGCAATCTTAGATATG
*
74027142 ATATAATCTTAGATATGATTGCAATCTTAGATATGATATGCAATCTTAGA
1 ATATAATCTT-CA-ATGATTGCAATCTTAGATATGATATGCAATCTTAGA
74027192 AGATATGATT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
52 10 0.21
53 1 0.02
54 36 0.77
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (52 bp):
ATATAATCTTCAATGATTGCAATCTTAGATATGATATGCAATCTTAGATATG
Found at i:74027217 original size:22 final size:22
Alignment explanation
Indices: 74027102--74027214 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
74027092 ATAATCTTCA
74027102 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
74027120 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
74027139 ATGATAT--AATCTTAG---AT
1 ATGATATGCAATCTTAGAAGAT
74027156 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
74027174 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
74027196 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
74027215 GATTTAATTT
Statistics
Matches: 81, Mismatches: 2, Indels: 19
0.79 0.02 0.19
Matches are distributed among these distances:
16 1 0.01
17 13 0.16
18 18 0.22
19 29 0.36
22 8 0.10
23 12 0.15
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:74027514 original size:17 final size:18
Alignment explanation
Indices: 74027483--74027516 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74027473 TTTCCCTGAT
*
74027483 TTTTTTATTATATTTTAA
1 TTTTTTAATATATTTTAA
74027501 TTTTTTAATA-ATTTTA
1 TTTTTTAATATATTTTA
74027517 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTTAATATATTTTAA
Found at i:74036150 original size:78 final size:78
Alignment explanation
Indices: 74036021--74036311 Score: 442
Period size: 78 Copynumber: 3.7 Consensus size: 78
74036011 CGAAGAAACA
** * * * *
74036021 GATTTGGCATCTCCATATTCGACGGAGAGCAGATTGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
74036086 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
74036099 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
*
74036164 GTAGATCCAAGAT
66 GCAGATCCAAGAT
*
74036177 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAAAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGA
74036241 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * * *
74036255 GATTTGGCATCTATGTATT-GAAGGGGAGCAGATCGAAGACATAGCAGATTTGACCTT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTT
74036312 AATGTGTTTA
Statistics
Matches: 196, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
77 34 0.17
78 162 0.83
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:74036449 original size:89 final size:89
Alignment explanation
Indices: 74036344--74036513 Score: 268
Period size: 89 Copynumber: 1.9 Consensus size: 89
74036334 TCCAAGATGA
* *
74036344 CAGATTTGTCATCTCTGTATTAGACAGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTATAT
1 CAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATAT
*
74036409 TAGACAGGGTGCAGATTGAAGAAG
66 TAGACAGGGAGCAGATTGAAGAAG
* * * * *
74036433 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATAT
74036498 TAGACAGGGAGCAGAT
66 TAGACAGGGAGCAGAT
74036514 CAAAGATAGT
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 73 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.26
Consensus pattern (89 bp):
CAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATAT
TAGACAGGGAGCAGATTGAAGAAG
Found at i:74036454 original size:44 final size:45
Alignment explanation
Indices: 74036328--74036521 Score: 264
Period size: 45 Copynumber: 4.3 Consensus size: 45
74036318 TTTACATCGA
* * *
74036328 AGCAGATCCAAGATGACAGATTTGTCATCTCTGTATTAGACAGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACAGGG
* * *
74036373 AGCAAATCGGAGATAACAGATTTGGCATCTCTATATTAGACAGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACAGGG
* * * * *
74036418 TGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACAGGG
*
74036462 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACAGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACAGGG
*
74036507 AGCAGATCAAAGATA
1 AGCAGATCGAAGATA
74036522 GTAGATATCT
Statistics
Matches: 129, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 38 0.29
45 91 0.71
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.25
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACAGGG
Found at i:74036942 original size:19 final size:18
Alignment explanation
Indices: 74036877--74036952 Score: 82
Period size: 18 Copynumber: 4.2 Consensus size: 18
74036867 TATAATCTTC
74036877 AATGATTGCAATCTTAAA
1 AATGATTGCAATCTTAAA
* * * *
74036895 TATGA-TACATTCTTAGA
1 AATGATTGCAATCTTAAA
*
74036912 TATGATTGCAATCTTAAA
1 AATGATTGCAATCTTAAA
74036930 AATGATATGCAATCTTAGAA
1 AATGAT-TGCAATCTTA-AA
74036950 AAT
1 AAT
74036953 ATGATTTTGT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
17 14 0.30
18 18 0.38
19 10 0.21
20 5 0.11
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.36
Consensus pattern (18 bp):
AATGATTGCAATCTTAAA
Found at i:74037270 original size:17 final size:18
Alignment explanation
Indices: 74037238--74037272 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
74037228 TGTTTCCCTG
*
74037238 ATTTTTTATTATATTTTA
1 ATTTTTTAATATATTTTA
74037256 ATTTTTTAATA-ATTTTA
1 ATTTTTTAATATATTTTA
74037273 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTTAATATATTTTA
Found at i:74038901 original size:11 final size:12
Alignment explanation
Indices: 74038870--74038902 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
74038860 CGTTTAAAAC
74038870 ATAAAAACAAAT
1 ATAAAAACAAAT
*
74038882 ATTAAAACAAAT
1 ATAAAAACAAAT
74038894 A-AAAAACAA
1 ATAAAAACAA
74038903 CACAAACAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 7 0.37
12 12 0.63
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (12 bp):
ATAAAAACAAAT
Found at i:74039613 original size:11 final size:11
Alignment explanation
Indices: 74039594--74039693 Score: 65
Period size: 11 Copynumber: 9.0 Consensus size: 11
74039584 AAACACGGCA
*
74039594 AAAAGTAACAGC
1 AAAA-TAACACC
74039606 AAAATAACACC
1 AAAATAACACC
* *
74039617 AAAACAACATC
1 AAAATAACACC
*
74039628 AAAACAACACC
1 AAAATAACACC
* *
74039639 AAAATACCATC
1 AAAATAACACC
** *
74039650 AAAGCAGCACC
1 AAAATAACACC
* *
74039661 AAAATACCATC
1 AAAATAACACC
* *
74039672 AAAACAGCACC
1 AAAATAACACC
*
74039683 AAAATAGCACC
1 AAAATAACACC
74039694 CAAACAGCAA
Statistics
Matches: 69, Mismatches: 19, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
11 65 0.94
12 4 0.06
ACGTcount: A:0.57, C:0.29, G:0.06, T:0.08
Consensus pattern (11 bp):
AAAATAACACC
Found at i:74039630 original size:22 final size:22
Alignment explanation
Indices: 74039594--74039688 Score: 109
Period size: 22 Copynumber: 4.3 Consensus size: 22
74039584 AAACACGGCA
* *
74039594 AAAAGTAACAGCAAAATAACACC
1 AAAA-TAACATCAAAACAACACC
*
74039617 AAAACAACATCAAAACAACACC
1 AAAATAACATCAAAACAACACC
* * *
74039639 AAAATACCATCAAAGCAGCACC
1 AAAATAACATCAAAACAACACC
* *
74039661 AAAATACCATCAAAACAGCACC
1 AAAATAACATCAAAACAACACC
74039683 AAAATA
1 AAAATA
74039689 GCACCCAAAC
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
22 60 0.94
23 4 0.06
ACGTcount: A:0.59, C:0.27, G:0.05, T:0.08
Consensus pattern (22 bp):
AAAATAACATCAAAACAACACC
Found at i:74039662 original size:44 final size:44
Alignment explanation
Indices: 74039613--74039710 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 44
74039603 AGCAAAATAA
*
74039613 CACCAAAACAACATCAAAACAACACCAAAATACCA-TCAAAGCAG
1 CACCAAAACAACATCAAAACAACACCAAAATACCACCCAAA-CAG
* * * *
74039657 CACCAAAATACCATCAAAACAGCACCAAAATAGCACCCAAACAG
1 CACCAAAACAACATCAAAACAACACCAAAATACCACCCAAACAG
*
74039701 CAACAAAACA
1 CACCAAAACA
74039711 GCACCCAAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
44 42 0.91
45 4 0.09
ACGTcount: A:0.56, C:0.33, G:0.05, T:0.06
Consensus pattern (44 bp):
CACCAAAACAACATCAAAACAACACCAAAATACCACCCAAACAG
Found at i:74039664 original size:33 final size:33
Alignment explanation
Indices: 74039600--74039664 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 33
74039590 GGCAAAAAGT
* *
74039600 AACAGCAAAATAACACCAAAACAACATCAAAAC
1 AACACCAAAATAACACCAAAACAACACCAAAAC
* * * *
74039633 AACACCAAAATACCATCAAAGCAGCACCAAAA
1 AACACCAAAATAACACCAAAACAACACCAAAA
74039665 TACCATCAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.60, C:0.29, G:0.05, T:0.06
Consensus pattern (33 bp):
AACACCAAAATAACACCAAAACAACACCAAAAC
Found at i:74039692 original size:33 final size:33
Alignment explanation
Indices: 74039659--74039754 Score: 93
Period size: 33 Copynumber: 2.8 Consensus size: 33
74039649 CAAAGCAGCA
* *
74039659 CCAAAATACCATCAAAACAGCACCAAAATAGCA
1 CCAAAATAGCATCAAAACAGCACCAAAACAGCA
* * * *
74039692 CCCAAACAGCAACAAAACAGCACCCAAACAGCA
1 CCAAAATAGCATCAAAACAGCACCAAAACAGCA
* * *
74039725 CAAAAAATAGCATCACCAACAACACCAAAA
1 C-CAAAATAGCATCA-AAACAGCACCAAAA
74039755 ACCTGCAAAA
Statistics
Matches: 48, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
33 28 0.58
34 9 0.19
35 11 0.23
ACGTcount: A:0.55, C:0.33, G:0.06, T:0.05
Consensus pattern (33 bp):
CCAAAATAGCATCAAAACAGCACCAAAACAGCA
Found at i:74039698 original size:22 final size:22
Alignment explanation
Indices: 74039629--74039754 Score: 112
Period size: 22 Copynumber: 5.6 Consensus size: 22
74039619 AACAACATCA
* * *
74039629 AAACAACACCAAAATACCA-TC
1 AAACAGCACCAAAATAGCACCC
* * *
74039650 AAAGCAGCACCAAAATACCATCA
1 AAA-CAGCACCAAAATAGCACCC
74039673 AAACAGCACCAAAATAGCACCC
1 AAACAGCACCAAAATAGCACCC
* *
74039695 AAACAGCAACAAAACAGCACCC
1 AAACAGCACCAAAATAGCACCC
*
74039717 AAACAGCACAAAAAATAGCATCACC
1 AAACAGCAC-CAAAATAGCA-C-CC
*
74039742 -AACAACACCAAAA
1 AAACAGCACCAAAA
74039755 ACCTGCAAAA
Statistics
Matches: 87, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
21 3 0.03
22 59 0.68
23 15 0.17
24 8 0.09
25 2 0.02
ACGTcount: A:0.56, C:0.33, G:0.06, T:0.06
Consensus pattern (22 bp):
AAACAGCACCAAAATAGCACCC
Found at i:74039702 original size:11 final size:11
Alignment explanation
Indices: 74039613--74039729 Score: 101
Period size: 11 Copynumber: 10.7 Consensus size: 11
74039603 AGCAAAATAA
*
74039613 CACCAAAACAA
1 CACCAAAACAG
* *
74039624 CATCAAAACAA
1 CACCAAAACAG
* *
74039635 CACCAAAATAC
1 CACCAAAACAG
* *
74039646 CATCAAAGCAG
1 CACCAAAACAG
* *
74039657 CACCAAAATAC
1 CACCAAAACAG
*
74039668 CATCAAAACAG
1 CACCAAAACAG
*
74039679 CACCAAAATAG
1 CACCAAAACAG
*
74039690 CACCCAAACAG
1 CACCAAAACAG
*
74039701 CAACAAAACAG
1 CACCAAAACAG
*
74039712 CACCCAAACAG
1 CACCAAAACAG
74039723 CA-CAAAA
1 CACCAAAA
74039730 AATAGCATCA
Statistics
Matches: 82, Mismatches: 24, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
10 4 0.05
11 78 0.95
ACGTcount: A:0.56, C:0.33, G:0.06, T:0.05
Consensus pattern (11 bp):
CACCAAAACAG
Found at i:74039914 original size:9 final size:9
Alignment explanation
Indices: 74039897--74039932 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
74039887 ATCGAAGAAA
74039897 CATCGTCCT
1 CATCGTCCT
*
74039906 CATCATCCT
1 CATCGTCCT
74039915 CATCGTCCT
1 CATCGTCCT
*
74039924 CATTGTCCT
1 CATCGTCCT
74039933 TATCATTCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.14, C:0.42, G:0.08, T:0.36
Consensus pattern (9 bp):
CATCGTCCT
Found at i:74042762 original size:12 final size:13
Alignment explanation
Indices: 74042739--74042763 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74042729 GTTAAACCTG
74042739 GATGGAAAAAAAA
1 GATGGAAAAAAAA
74042752 GATGGAAAAAAA
1 GATGGAAAAAAA
74042764 TTTTACATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (13 bp):
GATGGAAAAAAAA
Found at i:74047744 original size:6 final size:6
Alignment explanation
Indices: 74047719--74047795 Score: 77
Period size: 6 Copynumber: 12.7 Consensus size: 6
74047709 GAATCCTCCA
* *
74047719 ATTTTT -TTATTT ATTCTT ATTTTT A-TTTT ATTTTAT TTTATTT ATTTTT
1 ATTTTT ATT-TTT ATTTTT ATTTTT ATTTTT ATTTT-T ATT-TTT ATTTTT
* *
74047768 ATTTTT ATTTTG ATTTTT ATTTTC ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTT
74047796 CAATTTTATT
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
5 7 0.12
6 42 0.71
7 8 0.14
8 2 0.03
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.78
Consensus pattern (6 bp):
ATTTTT
Found at i:74047749 original size:5 final size:5
Alignment explanation
Indices: 74047723--74047816 Score: 79
Period size: 5 Copynumber: 18.0 Consensus size: 5
74047713 CCTCCAATTT
74047723 TTTTA -TTTA TTCTTA TTTTTA TTTTA TTTTA TTTTA -TTTA TTTTTA
1 TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA
*
74047769 TTTTTA TTTTGA TTTTTA TTTTCA TTTCAA TTTTA --TTA TTTTA TTTTA
1 -TTTTA TTTT-A -TTTTA TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTTA
74047817 AAAGACATAT
Statistics
Matches: 76, Mismatches: 2, Indels: 22
0.76 0.02 0.22
Matches are distributed among these distances:
3 3 0.04
4 8 0.11
5 33 0.43
6 26 0.34
7 6 0.08
ACGTcount: A:0.20, C:0.03, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:74047761 original size:31 final size:33
Alignment explanation
Indices: 74047723--74047795 Score: 114
Period size: 31 Copynumber: 2.2 Consensus size: 33
74047713 CCTCCAATTT
74047723 TTTTATTTATTCTTATTTTTATTTT-A-TTTTA
1 TTTTATTTATTCTTATTTTTATTTTGATTTTTA
*
74047754 TTTTATTTATTTTTATTTTTATTTTGATTTTTA
1 TTTTATTTATTCTTATTTTTATTTTGATTTTTA
74047787 TTTTCATTT
1 TTTT-ATTT
74047796 CAATTTTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
31 24 0.63
32 1 0.03
33 9 0.24
34 4 0.11
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.78
Consensus pattern (33 bp):
TTTTATTTATTCTTATTTTTATTTTGATTTTTA
Found at i:74047784 original size:43 final size:44
Alignment explanation
Indices: 74047728--74047815 Score: 121
Period size: 43 Copynumber: 2.0 Consensus size: 44
74047718 AATTTTTTTA
*
74047728 TTTATTCTTATTTTTATTTT-ATTT-TATTTTATTTATTTTTATT
1 TTTATTCTTATTTTTATTTTCATTTCAATTTTA-TTATTTTTATT
74047771 TTTATT-TTGATTTTTATTTTCATTTCAATTTTATTA-TTTTATT
1 TTTATTCTT-ATTTTTATTTTCATTTCAATTTTATTATTTTTATT
74047814 TT
1 TT
74047816 AAAAGACATA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
42 2 0.05
43 26 0.63
44 7 0.17
45 6 0.15
ACGTcount: A:0.19, C:0.03, G:0.01, T:0.76
Consensus pattern (44 bp):
TTTATTCTTATTTTTATTTTCATTTCAATTTTATTATTTTTATT
Done.