Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 256 of 292
Found at i:74047789 original size:12 final size:11
Alignment explanation
Indices: 74047728--74047816 Score: 92
Period size: 12 Copynumber: 7.8 Consensus size: 11
74047718 AATTTTTTTA
74047728 TTTATTCTTATT
1 TTTATT-TTATT
74047740 TTTATTTTA-T
1 TTTATTTTATT
74047750 TTTATTTTATT
1 TTTATTTTATT
*
74047761 TAT-TTTTATT
1 TTTATTTTATT
74047771 TTTATTTTGATT
1 TTTATTTT-ATT
74047783 TTTATTTTCATT
1 TTTATTTT-ATT
**
74047795 TCAATTTTATTAT
1 TTTATTTTA-T-T
74047808 TTTATTTTA
1 TTTATTTTA
74047817 AAAGACATAT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
10 19 0.29
11 11 0.17
12 27 0.42
13 8 0.12
ACGTcount: A:0.20, C:0.03, G:0.01, T:0.75
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:74052015 original size:13 final size:13
Alignment explanation
Indices: 74051997--74052021 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74051987 AAAACAACAT
74051997 ATAGAATACCCAC
1 ATAGAATACCCAC
74052010 ATAGAATACCCA
1 ATAGAATACCCA
74052022 GAAGAGATCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.28, G:0.08, T:0.16
Consensus pattern (13 bp):
ATAGAATACCCAC
Found at i:74053399 original size:22 final size:22
Alignment explanation
Indices: 74053337--74053401 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
74053327 TATGCACTAT
*
74053337 TAAACAGAGAGCACTAAAGTGC
1 TAAACAGAGAGCACTAATGTGC
* * **
74053359 TATACAGAAAGCAAGAATGTGC
1 TAAACAGAGAGCACTAATGTGC
74053381 TAAACAGAGAGCACTAATGTG
1 TAAACAGAGAGCACTAATGTG
74053402 TTAGTAATCG
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.45, C:0.15, G:0.23, T:0.17
Consensus pattern (22 bp):
TAAACAGAGAGCACTAATGTGC
Found at i:74053855 original size:41 final size:41
Alignment explanation
Indices: 74053810--74053891 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
74053800 TAGAATTCCG
74053810 GTATGACGTTAGCAATCAAACTTTAAACCTTGAAATCCCAA
1 GTATGACGTTAGCAATCAAACTTTAAACCTTGAAATCCCAA
74053851 GTATGACGTTAGCAATCAAACTTTAAACCTTGAAATCCCAA
1 GTATGACGTTAGCAATCAAACTTTAAACCTTGAAATCCCAA
74053892 ATTTTCTTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (41 bp):
GTATGACGTTAGCAATCAAACTTTAAACCTTGAAATCCCAA
Found at i:74053991 original size:5 final size:5
Alignment explanation
Indices: 74053981--74054063 Score: 159
Period size: 5 Copynumber: 16.8 Consensus size: 5
74053971 TTCTTTGTTT
74053981 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
74054031 TATAA TATAA TATAA TATAA TATAA TAT-A TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATA
74054064 CTTAACTTTT
Statistics
Matches: 77, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.05
5 73 0.95
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:74054321 original size:13 final size:13
Alignment explanation
Indices: 74054303--74054328 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74054293 CTAGCTCTGT
74054303 AAATATTTATTAA
1 AAATATTTATTAA
74054316 AAATATTTATTAA
1 AAATATTTATTAA
74054329 TTTTTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATATTTATTAA
Found at i:74056885 original size:18 final size:18
Alignment explanation
Indices: 74056858--74056900 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
74056848 ATGTAATGAT
*
74056858 GATGGGTAAAAGTATAAA
1 GATGGATAAAAGTATAAA
74056876 GATGGATAAAAGTATAAA
1 GATGGATAAAAGTATAAA
74056894 GATGGAT
1 GATGGAT
74056901 GGCTTAAGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.49, C:0.00, G:0.28, T:0.23
Consensus pattern (18 bp):
GATGGATAAAAGTATAAA
Found at i:74057512 original size:2 final size:2
Alignment explanation
Indices: 74057505--74057534 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
74057495 GACATGTTAA
74057505 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74057535 TTGTAAATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74057761 original size:35 final size:35
Alignment explanation
Indices: 74057715--74057789 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
74057705 CCAAATCCGG
74057715 CGAGTAAGCTCGTACATTTTATTATTTAATATTTA
1 CGAGTAAGCTCGTACATTTTATTATTTAATATTTA
74057750 CGAGTAAGCTCGTACATTTTATTATTTAATATTTA
1 CGAGTAAGCTCGTACATTTTATTATTTAATATTTA
74057785 CGAGT
1 CGAGT
74057790 CAAATATGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (35 bp):
CGAGTAAGCTCGTACATTTTATTATTTAATATTTA
Found at i:74058231 original size:29 final size:29
Alignment explanation
Indices: 74058197--74058254 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
74058187 TATATTGAAA
74058197 TTAAATAAGACAAATTGAAATTTAAAAGC
1 TTAAATAAGACAAATTGAAATTTAAAAGC
74058226 TTAAATAAGACAAATTGAAATTTAAAAGC
1 TTAAATAAGACAAATTGAAATTTAAAAGC
74058255 ATTCTAGGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (29 bp):
TTAAATAAGACAAATTGAAATTTAAAAGC
Found at i:74058711 original size:21 final size:21
Alignment explanation
Indices: 74058670--74058778 Score: 73
Period size: 21 Copynumber: 5.2 Consensus size: 21
74058660 CTTTTTGTTT
* *
74058670 AGCTCTTTCGATCTTCT-GTTC
1 AGCTCTTACGAGCTT-TAGTTC
74058691 AGCTCTTACGAGCTTTAGTTC
1 AGCTCTTACGAGCTTTAGTTC
** * *
74058712 AAATCTTATGAGTTTCTA-TTC
1 AGCTCTTACGAGCTT-TAGTTC
* *
74058733 AGTTCTTACGAGCTGCTA-TTC
1 AGCTCTTACGAGCT-TTAGTTC
*
74058754 AGCTCTTAC-ATGCTTTTGTTC
1 AGCTCTTACGA-GCTTTAGTTC
74058775 AGCT
1 AGCT
74058779 TTTGAGCTTT
Statistics
Matches: 69, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
20 3 0.04
21 64 0.93
22 2 0.03
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.43
Consensus pattern (21 bp):
AGCTCTTACGAGCTTTAGTTC
Found at i:74059047 original size:10 final size:8
Alignment explanation
Indices: 74059024--74059058 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
74059014 TAATGGCACA
74059024 TGATATAT
1 TGATATAT
74059032 TGATATAT
1 TGATATAT
74059040 TGATATAT
1 TGATATAT
*
74059048 TAATATAT
1 TGATATAT
74059056 TGA
1 TGA
74059059 AATGGATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (8 bp):
TGATATAT
Found at i:74059223 original size:13 final size:13
Alignment explanation
Indices: 74059205--74059230 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74059195 GTTGAGATAA
74059205 TAAGGTTATCGAT
1 TAAGGTTATCGAT
74059218 TAAGGTTATCGAT
1 TAAGGTTATCGAT
74059231 GTTGAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
TAAGGTTATCGAT
Found at i:74061342 original size:34 final size:34
Alignment explanation
Indices: 74061299--74061367 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
74061289 CTTAACGAGT
*
74061299 TTATTTTTAACGCATAGGTACAGTTAGACTCGAA
1 TTATTTTTAACGCATAGGTACAGTTAAACTCGAA
74061333 TTATTTTTAACGCATAGGTACAGTTAAACTCGAA
1 TTATTTTTAACGCATAGGTACAGTTAAACTCGAA
74061367 T
1 T
74061368 AGGTAGAGTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.36
Consensus pattern (34 bp):
TTATTTTTAACGCATAGGTACAGTTAAACTCGAA
Found at i:74063450 original size:30 final size:30
Alignment explanation
Indices: 74063416--74063476 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
74063406 TTCCCGAGCC
74063416 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
74063446 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
74063476 T
1 T
74063477 GAGTTAATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:74066225 original size:19 final size:19
Alignment explanation
Indices: 74066201--74066278 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 19
74066191 AATCATATCT
74066201 TCTAAGATTACATATCTTA
1 TCTAAGATTACATATCTTA
**
74066220 TCTAAGA-TATGTAATCTTA
1 TCTAAGATTACAT-ATCTTA
*
74066239 --TAA-AATA-ATATCTTA
1 TCTAAGATTACATATCTTA
*
74066254 --TAAGATTACATATCATA
1 TCTAAGATTACATATCTTA
74066271 TCTAAGAT
1 TCTAAGAT
74066279 CTCTAAGATT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
15 9 0.19
16 5 0.10
17 12 0.25
18 3 0.06
19 19 0.40
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (19 bp):
TCTAAGATTACATATCTTA
Found at i:74066241 original size:51 final size:51
Alignment explanation
Indices: 74066178--74066310 Score: 185
Period size: 51 Copynumber: 2.6 Consensus size: 51
74066168 CAATCAAATC
* * *
74066178 TCTAAGAATATAAAATCATATCTTCTAAGATTACATATCTTATCTAAGATA
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
* ** * *
74066229 TGTAATCTTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATC
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
*
74066280 TCTAAGATTATAAAATCATATCTTTTAAGAT
1 TCTAAGATTATAAAATCATATCTTATAAGAT
74066311 CATGTTTCCA
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.39
Consensus pattern (51 bp):
TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
Found at i:74086350 original size:41 final size:41
Alignment explanation
Indices: 74086272--74086366 Score: 109
Period size: 41 Copynumber: 2.3 Consensus size: 41
74086262 AGTATGATGC
* **
74086272 AGTCGTATTTGTTGCCTATTACCTCAACTGATATTGTGACG
1 AGTCGTATTTATTGCCTATTACCTCAACCAATATTGTGACG
* * * * *
74086313 AGTCATATTTATTGTCTATTATCTCAACCAATTTTGTGATG
1 AGTCGTATTTATTGCCTATTACCTCAACCAATATTGTGACG
*
74086354 AGTTGTATTTATT
1 AGTCGTATTTATT
74086367 ACCTCTTTTC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.45
Consensus pattern (41 bp):
AGTCGTATTTATTGCCTATTACCTCAACCAATATTGTGACG
Found at i:74095732 original size:24 final size:23
Alignment explanation
Indices: 74095705--74095774 Score: 59
Period size: 24 Copynumber: 2.9 Consensus size: 23
74095695 AATTCATATC
* *
74095705 GTGAATTTCTATCAAATAAAAAAA
1 GTGAAATTATATCAAA-AAAAAAA
*
74095729 GTGAAAATTATATTAAAAAAAAAA
1 GTG-AAATTATATCAAAAAAAAAA
* * *
74095753 GTGATAATCAAATCAACAAAAA
1 GTGA-AATTATATCAAAAAAAA
74095775 GACATATAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
23 1 0.03
24 26 0.70
25 10 0.27
ACGTcount: A:0.60, C:0.07, G:0.09, T:0.24
Consensus pattern (23 bp):
GTGAAATTATATCAAAAAAAAAA
Found at i:74095940 original size:32 final size:32
Alignment explanation
Indices: 74095882--74095944 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
74095872 ATTAATCCGT
*
74095882 ATGAGTTATCAAATTATATTAATTAATTTATC
1 ATGAGTTATCAAATTATAGTAATTAATTTATC
* *
74095914 ATGAGTTATTAAATTCA-AGTAGTTAATTTAT
1 ATGAGTTATCAAATT-ATAGTAATTAATTTAT
74095945 AAATGTATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.46
Consensus pattern (32 bp):
ATGAGTTATCAAATTATAGTAATTAATTTATC
Found at i:74101665 original size:22 final size:24
Alignment explanation
Indices: 74101627--74101671 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
74101617 AATGCAATAT
74101627 TGTTGAAAAATCAAATAA-AAAAG
1 TGTTGAAAAATCAAATAAGAAAAG
74101650 TGTTG-AAAA-CACAATAAGAAAA
1 TGTTGAAAAATCA-AATAAGAAAA
74101672 AAACATAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 2 0.10
22 9 0.45
23 9 0.45
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (24 bp):
TGTTGAAAAATCAAATAAGAAAAG
Found at i:74105481 original size:19 final size:18
Alignment explanation
Indices: 74105457--74105504 Score: 78
Period size: 19 Copynumber: 2.6 Consensus size: 18
74105447 ACGTAAAAAG
74105457 TAAAAAGTAAAAGATGAAA
1 TAAAAA-TAAAAGATGAAA
74105476 TAAAAATAAAAAGATGAAA
1 TAAAAAT-AAAAGATGAAA
74105495 TAAAAATAAA
1 TAAAAATAAA
74105505 TAACAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (18 bp):
TAAAAATAAAAGATGAAA
Found at i:74105528 original size:23 final size:23
Alignment explanation
Indices: 74105473--74105528 Score: 55
Period size: 23 Copynumber: 2.4 Consensus size: 23
74105463 GTAAAAGATG
74105473 AAATAAAAATAAAAAGATGAAAT
1 AAATAAAAATAAAAAGATGAAAT
*
74105496 AAA-AATAAATAACAAA-AT-AATTT
1 AAATAA-AAATAA-AAAGATGAA-AT
74105519 AAATAAAAAT
1 AAATAAAAAT
74105529 CAATAAAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
22 4 0.14
23 19 0.68
24 5 0.18
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (23 bp):
AAATAAAAATAAAAAGATGAAAT
Found at i:74106405 original size:11 final size:11
Alignment explanation
Indices: 74106391--74106461 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
74106381 ATAGCTTAAG
*
74106391 AAAATTAATAT
1 AAAATTAAAAT
74106402 AAAATCTAAAAT
1 AAAAT-TAAAAT
*
74106414 AATAA-T-AATT
1 AA-AATTAAAAT
*
74106424 AAAAAT-AAAT
1 AAAATTAAAAT
74106434 AAAATTAAAAT
1 AAAATTAAAAT
*
74106445 AAACTTAAAAT
1 AAAATTAAAAT
*
74106456 AGAATT
1 AAAATT
74106462 TCCTATTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
9 2 0.04
10 14 0.29
11 24 0.49
12 7 0.14
13 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (11 bp):
AAAATTAAAAT
Found at i:74106430 original size:16 final size:16
Alignment explanation
Indices: 74106400--74106447 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
74106390 GAAAATTAAT
74106400 ATAAAATCT-AAAAT-A
1 ATAAAAT-TAAAAATAA
74106415 ATAATAATTAAAAATAA
1 ATAA-AATTAAAAATAA
74106432 ATAAAATT-AAAATAA
1 ATAAAATTAAAAATAA
74106447 A
1 A
74106448 CTTAAAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.43
16 12 0.40
17 5 0.17
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAATTAAAAATAA
Found at i:74110673 original size:19 final size:18
Alignment explanation
Indices: 74110649--74110696 Score: 78
Period size: 19 Copynumber: 2.6 Consensus size: 18
74110639 ACGTAAAAAG
74110649 TAAAAAGTAAAAGATGAAA
1 TAAAAA-TAAAAGATGAAA
74110668 TAAAAATAAAAAGATGAAA
1 TAAAAAT-AAAAGATGAAA
74110687 TAAAAATAAA
1 TAAAAATAAA
74110697 TAACAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (18 bp):
TAAAAATAAAAGATGAAA
Found at i:74119767 original size:16 final size:15
Alignment explanation
Indices: 74119742--74119789 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
74119732 CTATTTTAAG
74119742 TTTATTTTAATTTTA
1 TTTATTTTAATTTTA
74119757 TTTATTTTTAATTATTA
1 TTTA-TTTTAATT-TTA
74119774 -TTATTTTAGATTTTA
1 TTTATTTTA-ATTTTA
74119789 T
1 T
74119790 ATTAATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 14 0.48
17 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTTAATTTTA
Found at i:74120724 original size:19 final size:19
Alignment explanation
Indices: 74120677--74120716 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
74120667 TATTTTGTTA
74120677 TTTATTTTTATTTCATCTT
1 TTTATTTTTATTTCATCTT
74120696 TTTATTTTTATTTCATCTT
1 TTTATTTTTATTTCATCTT
74120715 TT
1 TT
74120717 ACTTTTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTATTTTTATTTCATCTT
Found at i:74121942 original size:24 final size:25
Alignment explanation
Indices: 74121899--74121949 Score: 95
Period size: 24 Copynumber: 2.1 Consensus size: 25
74121889 AACCGACAAG
74121899 ACGGGTTAATAGGGTAAACGTTTCA
1 ACGGGTTAATAGGGTAAACGTTTCA
74121924 ACGGGTTAAT-GGGTAAACGTTTCA
1 ACGGGTTAATAGGGTAAACGTTTCA
74121948 AC
1 AC
74121950 TTTAGAAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (25 bp):
ACGGGTTAATAGGGTAAACGTTTCA
Found at i:74124996 original size:16 final size:15
Alignment explanation
Indices: 74124971--74125018 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
74124961 CTATTTTAAG
74124971 TTTATTTTAATTTTA
1 TTTATTTTAATTTTA
74124986 TTTATTTTTAATTATTA
1 TTTA-TTTTAATT-TTA
74125003 -TTATTTTAGATTTTA
1 TTTATTTTA-ATTTTA
74125018 T
1 T
74125019 ATTAATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 14 0.48
17 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTTAATTTTA
Found at i:74125930 original size:19 final size:19
Alignment explanation
Indices: 74125906--74125945 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
74125896 TATTTTGTTA
74125906 TTTATTTTTATTTCATCTT
1 TTTATTTTTATTTCATCTT
74125925 TTTATTTTTATTTCATCTT
1 TTTATTTTTATTTCATCTT
74125944 TT
1 TT
74125946 ACCTTTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTATTTTTATTTCATCTT
Found at i:74129478 original size:57 final size:57
Alignment explanation
Indices: 74129390--74129502 Score: 226
Period size: 57 Copynumber: 2.0 Consensus size: 57
74129380 CATGTTGTTG
74129390 CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATATT
1 CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATATT
74129447 CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATAT
1 CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATAT
74129503 GATAATTTCG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (57 bp):
CCTCTAAGTTTTCCCACCTTGAAACAGATTGTGAACAGTTTGCAAAACCTGTATATT
Found at i:74133035 original size:46 final size:44
Alignment explanation
Indices: 74132931--74133038 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
74132921 TGTCTTTGAC
** * * *
74132931 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
74132975 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
74133021 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
74133039 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:74140403 original size:46 final size:44
Alignment explanation
Indices: 74140299--74140406 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
74140289 TGTCTTTGAC
** * * *
74140299 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
74140343 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
74140389 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
74140407 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:74144034 original size:46 final size:44
Alignment explanation
Indices: 74143975--74144089 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
74143965 ACAGGACAGA
* *
74143975 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
74144021 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
74144065 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
74144090 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:74144070 original size:44 final size:45
Alignment explanation
Indices: 74143975--74144108 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
74143965 ACAGGACAGA
* *
74143975 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
74144021 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
74144065 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
74144109 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:74145782 original size:7 final size:6
Alignment explanation
Indices: 74145761--74145791 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
74145751 TAAATAAAGG
*
74145761 AAAATA AAATTA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA AAAATA A
74145792 TAAAAAGGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:74153441 original size:12 final size:12
Alignment explanation
Indices: 74153424--74153449 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74153414 AAACCACAGA
74153424 AAAAAGTTTCCT
1 AAAAAGTTTCCT
74153436 AAAAAGTTTCCT
1 AAAAAGTTTCCT
74153448 AA
1 AA
74153450 GTATATTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (12 bp):
AAAAAGTTTCCT
Found at i:74155679 original size:3 final size:3
Alignment explanation
Indices: 74155673--74155701 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
74155663 CCTGACTCTC
74155673 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
74155702 ACAAGCTCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:74156736 original size:2 final size:2
Alignment explanation
Indices: 74156723--74156759 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
74156713 TAAATGAGTT
*
74156723 TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
74156760 TTCAAAATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:74159992 original size:24 final size:24
Alignment explanation
Indices: 74159965--74160013 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
74159955 CGTATATTTA
*
74159965 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
74159989 TTAAAAGTCTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
74160013 T
1 T
74160014 GTTATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
TTAAAAGTCTATATAAAAATTAAT
Found at i:74160099 original size:14 final size:14
Alignment explanation
Indices: 74160061--74160113 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
74160051 TTATTAAGGT
* *
74160061 TTATGGATTATGGA
1 TTATGGTTTATAGA
74160075 TTATGGGTTTATAGA
1 TTAT-GGTTTATAGA
* * *
74160090 TTATGATTTACAGT
1 TTATGGTTTATAGA
74160104 TTATGGTTTA
1 TTATGGTTTA
74160114 AGGGTTGGGG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.26, C:0.02, G:0.23, T:0.49
Consensus pattern (14 bp):
TTATGGTTTATAGA
Found at i:74160126 original size:21 final size:22
Alignment explanation
Indices: 74160102--74160147 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
74160092 ATGATTTACA
*
74160102 GTTTATGGTTTAAGG-GTT-GGG
1 GTTTAAGGTTT-AGGTGTTAGGG
74160123 GTTTAAGGTTTAGGTGTTAGGG
1 GTTTAAGGTTTAGGTGTTAGGG
74160145 GTT
1 GTT
74160148 AGGGGTTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 3 0.14
21 13 0.59
22 6 0.27
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.43
Consensus pattern (22 bp):
GTTTAAGGTTTAGGTGTTAGGG
Found at i:74160545 original size:22 final size:23
Alignment explanation
Indices: 74160520--74160583 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
74160510 AATTTTTAAA
*
74160520 AAAAATTATTTAAAATT-AATAT
1 AAAAATTATTAAAAATTCAATAT
74160542 AAAAGA-TA-TAAAAATTCAATAT
1 AAAA-ATTATTAAAAATTCAATAT
* *
74160564 AAAAATTATAAAAAAGTCAA
1 AAAAATTATTAAAAATTCAA
74160584 ACATTAGCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
21 8 0.23
22 17 0.49
23 10 0.29
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (23 bp):
AAAAATTATTAAAAATTCAATAT
Found at i:74160656 original size:39 final size:40
Alignment explanation
Indices: 74160588--74160697 Score: 186
Period size: 39 Copynumber: 2.8 Consensus size: 40
74160578 AGTCAAACAT
74160588 TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAATCAA
1 TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAATCAA
* *
74160628 TAGCGGCGTTTAT-ATAAAAACGCAGCAAAAGGCAATCAA
1 TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAATCAA
*
74160667 TAGCAGCGTTTATGATAAAAACGCCGCAAAA
1 TAGCGGCGTTTATGATAAAAACGCCGCAAAA
74160698 AGTAATTTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
39 36 0.55
40 29 0.45
ACGTcount: A:0.43, C:0.19, G:0.20, T:0.18
Consensus pattern (40 bp):
TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAATCAA
Found at i:74160884 original size:20 final size:19
Alignment explanation
Indices: 74160863--74160900 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
74160853 TATTTCTCTC
*
74160863 CCCCGATTCCCTTTTCTTT
1 CCCCAATTCCCTTTTCTTT
74160882 -CCCAATTCCCTTTTCTTT
1 CCCCAATTCCCTTTTCTTT
74160900 C
1 C
74160901 TCATCCTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.08, C:0.42, G:0.03, T:0.47
Consensus pattern (19 bp):
CCCCAATTCCCTTTTCTTT
Found at i:74166828 original size:33 final size:33
Alignment explanation
Indices: 74166772--74166838 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
74166762 ATCCTTTGGA
* *
74166772 TCTCTTTGTTACTAGTTCCAATGCGTATCTTCT
1 TCTCATTGCTACTAGTTCCAATGCGTATCTTCT
* *
74166805 TCTCATTGCTACTGGTTCCAATGCGTATGTTCT
1 TCTCATTGCTACTAGTTCCAATGCGTATCTTCT
74166838 T
1 T
74166839 AAGTATGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.15, C:0.24, G:0.15, T:0.46
Consensus pattern (33 bp):
TCTCATTGCTACTAGTTCCAATGCGTATCTTCT
Found at i:74167286 original size:241 final size:241
Alignment explanation
Indices: 74166863--74167538 Score: 1289
Period size: 241 Copynumber: 2.8 Consensus size: 241
74166853 ATGAATTAAT
*
74166863 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
*
74166928 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
74166993 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
74167058 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
*
74167104 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAATAATAGCTGACCTTCTCTCCAACATT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
*
74167169 TTTTTAAATTTTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
74167234 CTGTAAGATATAATGGATCCTCCCTAGATGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
74167299 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
*
74167345 TTTATTACCATGTAGTTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
74167410 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
74167475 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTACGATGAATCTTAAAAAATT
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
74167539 ACTATATTCA
Statistics
Matches: 425, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 425 1.00
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (241 bp):
TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
Found at i:74167681 original size:9 final size:9
Alignment explanation
Indices: 74167658--74167785 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
74167648 ATTGATCATT
*
74167658 ACTTAAATA
1 ACTTACATA
*
74167667 AATTACATA
1 ACTTACATA
74167676 ACTTACATA
1 ACTTACATA
* *
74167685 ACTCATATA
1 ACTTACATA
74167694 ACTTACATA
1 ACTTACATA
*
74167703 ATTTACATAACA
1 ACTTACAT---A
74167715 ACTTACATA
1 ACTTACATA
*
74167724 ACTCACATA
1 ACTTACATA
74167733 ACTTACATA
1 ACTTACATA
*
74167742 ATTTACATA
1 ACTTACATA
*
74167751 ACTCACATA
1 ACTTACATA
*
74167760 ACGTACATAACA
1 ACTTACAT---A
74167772 ACTTACATA
1 ACTTACATA
74167781 ACTTA
1 ACTTA
74167786 ACTAATACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 80 0.83
12 16 0.17
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:74167727 original size:39 final size:39
Alignment explanation
Indices: 74167675--74167752 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
74167665 TAAATTACAT
*
74167675 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
74167714 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
74167753 TCACATAACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:74167752 original size:57 final size:57
Alignment explanation
Indices: 74167671--74167783 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 57
74167661 TAAATAAATT
* * **
74167671 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
74167728 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
74167784 TAACTAATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:74173696 original size:31 final size:31
Alignment explanation
Indices: 74173650--74173716 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
74173640 TGGTTGTATT
* *
74173650 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
74173681 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
74173712 TTTTA
1 TTTTA
74173717 ATGCGGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:74173815 original size:43 final size:43
Alignment explanation
Indices: 74173787--74173898 Score: 188
Period size: 43 Copynumber: 2.6 Consensus size: 43
74173777 TTTGTAGAAA
*
74173787 AAACGCCGCTAAAAGCCTTGACCTTTAGTGGCGCTTTTCCAGC
1 AAACGCCGCTAAAAGCCTTGACCTTTAGTGGCGCTTTTCCAAC
* * *
74173830 AAACGCCGCTAAAAGCTTTGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAAGCCTTGACCTTTAGTGGCGCTTTTCCAAC
74173873 AAACGCCGCTAAAAGCCTTGACCTTT
1 AAACGCCGCTAAAAGCCTTGACCTTT
74173899 TGTAAAAGCC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAAGCCTTGACCTTTAGTGGCGCTTTTCCAAC
Found at i:74173936 original size:62 final size:62
Alignment explanation
Indices: 74173839--74173962 Score: 203
Period size: 62 Copynumber: 2.0 Consensus size: 62
74173829 CAAACGCCGC
*
74173839 TAAAAGCTTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTTG
1 TAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTTG
* * * *
74173901 TAAAAGCCTTGATCTTTAGCGGTGTTTTTTCCACAAACGCCGCTAAAAGCCTTGACCTTTTG
1 TAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTTG
74173963 CGGCGCTTTT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (62 bp):
TAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTTG
Found at i:74173980 original size:43 final size:43
Alignment explanation
Indices: 74173901--74174094 Score: 264
Period size: 43 Copynumber: 4.5 Consensus size: 43
74173891 TGACCTTTTG
* * *
74173901 TAAAAGCCTTGATCTTTAGCGGTGTTTTTTCC-ACAAACGCCGC
1 TAAAAGCCTTGACCTTTAGCGGCG-CTTTTCCAACAAACGCCGC
* *
74173944 TAAAAGCCTTGACCTTTTGCGGCGCTTTTCTAACAAACGCCGC
1 TAAAAGCCTTGACCTTTAGCGGCGCTTTTCCAACAAACGCCGC
* * * *
74173987 TAAAAGCCTTGACCTTTTGCGGTGCTTTTCCAACAAATGCTGC
1 TAAAAGCCTTGACCTTTAGCGGCGCTTTTCCAACAAACGCCGC
* * *
74174030 TAAAAGCCTTGACCTTTAGTGGCGCTTTTCCCACAAACGCCAC
1 TAAAAGCCTTGACCTTTAGCGGCGCTTTTCCAACAAACGCCGC
74174073 TAAAAGCCTTGACCTTTAGCGG
1 TAAAAGCCTTGACCTTTAGCGG
74174095 TGTTTTTTTC
Statistics
Matches: 133, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
42 5 0.04
43 128 0.96
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (43 bp):
TAAAAGCCTTGACCTTTAGCGGCGCTTTTCCAACAAACGCCGC
Found at i:74173980 original size:105 final size:105
Alignment explanation
Indices: 74173796--74174005 Score: 332
Period size: 105 Copynumber: 2.0 Consensus size: 105
74173786 AAAACGCCGC
* *
74173796 TAAAAGCCTTGACCTTTAGTGGCGCTTTTCCAGCAAACGCCGCTAAAAGCTTTGACCTTTAGCGG
1 TAAAAGCCTTGACCTTTAGCGGCGCTTTTCCAGCAAACGCCGCTAAAAGCCTTGACCTTTAGCGG
*
74173861 CGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTTG
66 CGCTTTTCCAACAAACGCCGCTAAAAGCCTTGACCTTTTG
* * * *
74173901 TAAAAGCCTTGATCTTTAGCGGTGTTTTTTCCA-CAAACGCCGCTAAAAGCCTTGACCTTTTGCG
1 TAAAAGCCTTGACCTTTAGCGGCG-CTTTTCCAGCAAACGCCGCTAAAAGCCTTGACCTTTAGCG
*
74173965 GCGCTTTTCTAACAAACGCCGCTAAAAGCCTTGACCTTTTG
65 GCGCTTTTCCAACAAACGCCGCTAAAAGCCTTGACCTTTTG
74174006 CGGTGCTTTT
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
105 89 0.93
106 7 0.07
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (105 bp):
TAAAAGCCTTGACCTTTAGCGGCGCTTTTCCAGCAAACGCCGCTAAAAGCCTTGACCTTTAGCGG
CGCTTTTCCAACAAACGCCGCTAAAAGCCTTGACCTTTTG
Found at i:74174046 original size:86 final size:85
Alignment explanation
Indices: 74173901--74174101 Score: 294
Period size: 86 Copynumber: 2.3 Consensus size: 85
74173891 TGACCTTTTG
* *
74173901 TAAAAGCCTTGATCTTTAGCGGTGTTTTTTCCACAAACGCCGCTAAAAGCCTTGACCTTTTGCGG
1 TAAAAGCCTTGACCTTTAGCGGTG-TTTTTCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGG
* *
74173966 CGCTTTTCTAACAAACGCCGC
65 CGCTTTTCCAACAAACGCCAC
* * * * *
74173987 TAAAAGCCTTGACCTTTTGCGGTGCTTTTCCAACAAATGCTGCTAAAAGCCTTGACCTTTAGTGG
1 TAAAAGCCTTGACCTTTAGCGGTGTTTTTCC-ACAAACGCCGCTAAAAGCCTTGACCTTTAGCGG
*
74174052 CGCTTTTCCCACAAACGCCAC
65 CGCTTTTCCAACAAACGCCAC
74174073 TAAAAGCCTTGACCTTTAGCGGTGTTTTT
1 TAAAAGCCTTGACCTTTAGCGGTGTTTTT
74174102 TTCCAATAAA
Statistics
Matches: 102, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
85 6 0.06
86 96 0.94
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.31
Consensus pattern (85 bp):
TAAAAGCCTTGACCTTTAGCGGTGTTTTTCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGC
GCTTTTCCAACAAACGCCAC
Found at i:74174423 original size:12 final size:12
Alignment explanation
Indices: 74174406--74174430 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74174396 TTTTAAACCT
74174406 TATTAAATTCTA
1 TATTAAATTCTA
74174418 TATTAAATTCTA
1 TATTAAATTCTA
74174430 T
1 T
74174431 CTATTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TATTAAATTCTA
Found at i:74178587 original size:18 final size:18
Alignment explanation
Indices: 74178564--74178617 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
74178554 CCACCACCAA
74178564 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
74178582 CTCCACCA-CCA-A----
1 CTCCACTAGCCACACTTG
74178594 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
74178612 CTCCAC
1 CTCCAC
74178618 CACCACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 1 0.04
16 1 0.04
17 3 0.11
18 13 0.46
ACGTcount: A:0.24, C:0.50, G:0.07, T:0.19
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:74178590 original size:30 final size:30
Alignment explanation
Indices: 74178554--74178622 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
74178544 CTAACCTTTG
74178554 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
74178584 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
74178614 CCACCACCA
1 CCACCACCA
74178623 CTTGTACCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.28, C:0.52, G:0.06, T:0.14
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:74179139 original size:23 final size:23
Alignment explanation
Indices: 74179102--74179246 Score: 77
Period size: 23 Copynumber: 6.2 Consensus size: 23
74179092 TTTTTTTTGT
74179102 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
74179125 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
** *
74179147 TATTAGGTATATTCTAAAT-TCTA
1 TATTATATATATTCTTAATAT-TA
* *
74179170 TATTACGTATATA-TATT-ATACTA
1 TATTA--TATATATTCTTAATATTA
* * *
74179193 TTTTATGTATATATCTTTAATACTA
1 TATTATATATAT-TC-TTAATATTA
74179218 TATTATATATATAT-TTATATATATA
1 TATTATATATAT-TCTTA-ATAT-TA
74179243 TATT
1 TATT
74179247 TCACATGTTA
Statistics
Matches: 92, Mismatches: 18, Indels: 22
0.70 0.14 0.17
Matches are distributed among these distances:
21 5 0.05
22 17 0.18
23 31 0.34
24 11 0.12
25 28 0.30
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.55
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:74179205 original size:25 final size:25
Alignment explanation
Indices: 74179177--74179246 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
74179167 CTATATTACG
* *
74179177 TATATATATTATACTATTTTATGTA
1 TATATATATTATACTATATTATATA
*
74179202 TATATCT-TTAATACTATATTATATA
1 TATATATATT-ATACTATATTATATA
*
74179227 TATATTTATATATA-TATATT
1 TATATATAT-TATACTATATT
74179247 TCACATGTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
24 2 0.05
25 31 0.82
26 4 0.11
27 1 0.03
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.56
Consensus pattern (25 bp):
TATATATATTATACTATATTATATA
Found at i:74179237 original size:12 final size:12
Alignment explanation
Indices: 74179200--74179243 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
74179190 CTATTTTATG
*
74179200 TATATATCTTTA
1 TATATATATTTA
74179212 -ATACTATA-TTA
1 TATA-TATATTTA
74179223 TATATATATTTA
1 TATATATATTTA
74179235 TATATATAT
1 TATATATAT
74179244 ATTTCACATG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
11 10 0.36
12 18 0.64
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (12 bp):
TATATATATTTA
Found at i:74179238 original size:14 final size:14
Alignment explanation
Indices: 74179221--74179247 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
74179211 AATACTATAT
74179221 TATATATATATTTA
1 TATATATATATTTA
74179235 TATATATATATTT
1 TATATATATATTT
74179248 CACATGTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATATATATATTTA
Found at i:74179284 original size:22 final size:23
Alignment explanation
Indices: 74179239--74179320 Score: 76
Period size: 25 Copynumber: 3.4 Consensus size: 23
74179229 TATTTATATA
* *
74179239 TATATATTTCACATGTTATCTTATG
1 TATATATTTTACA--TTATATTATG
74179264 TATATATTTTA-ATTATATTATG
1 TATATATTTTACATTATATTATG
* *
74179286 TATGTATTTTTTACACTATATTATG
1 TA--TATATTTTACATTATATTATG
*
74179311 TACATATTTT
1 TATATATTTT
74179321 TAATATTATC
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
22 11 0.23
23 6 0.12
24 9 0.19
25 22 0.46
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.56
Consensus pattern (23 bp):
TATATATTTTACATTATATTATG
Found at i:74179341 original size:23 final size:23
Alignment explanation
Indices: 74179315--74179363 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
74179305 ATTATGTACA
74179315 TATTTTTAATATTAT-CACATATT
1 TATTTTTAATA-TATGCACATATT
* *
74179338 TATTTTTTATATATGTACATATT
1 TATTTTTAATATATGCACATATT
74179361 TAT
1 TAT
74179364 GTAGTATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTTTTAATATATGCACATATT
Found at i:74179504 original size:16 final size:15
Alignment explanation
Indices: 74179480--74179514 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
74179470 TAATTATTAT
74179480 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
74179496 TATTTTAATATTTTA
1 TATTCTAATATTTTA
74179511 TATT
1 TATT
74179515 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:74181023 original size:47 final size:46
Alignment explanation
Indices: 74180961--74181075 Score: 126
Period size: 47 Copynumber: 2.5 Consensus size: 46
74180951 ATAATAATGC
* * * *
74180961 CATAGCCCAGCTATGGTCTTACAC-GTAATCACATATCTC-ACTGATG
1 CATATCCCAGATATGGTCTTACACAGT-AGCACATATCACAAC-GATG
* *
74181007 TCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAACGATG
1 -CATATCCCAGATATGGTCTTACACAGTAGCACATATCACAACGATG
74181054 CTATATCCCAGATATGGTCTTA
1 C-ATATCCCAGATATGGTCTTA
74181076 TACAAAAATC
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
46 1 0.02
47 54 0.92
48 4 0.07
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (46 bp):
CATATCCCAGATATGGTCTTACACAGTAGCACATATCACAACGATG
Found at i:74181096 original size:7 final size:7
Alignment explanation
Indices: 74181084--74181112 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
74181074 TATACAAAAA
74181084 TCACTTG
1 TCACTTG
74181091 TCACTTG
1 TCACTTG
74181098 TCACTTG
1 TCACTTG
74181105 TCACTTG
1 TCACTTG
74181112 T
1 T
74181113 AGCCAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:74181146 original size:31 final size:31
Alignment explanation
Indices: 74181111--74181288 Score: 225
Period size: 31 Copynumber: 5.7 Consensus size: 31
74181101 CTTGTCACTT
*
74181111 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
**** *
74181142 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
* *
74181173 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
74181204 GTAG-CAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCA-AAGCTACCACTTTTCACTGATCAG
*
74181235 GTAGCTGAAA-CTACCACTTTTCACTGATCAG
1 GTAGC-CAAAGCTACCACTTTTCACTGATCAG
**
74181266 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCAAAGCTACCACTTTTCA
74181289 GTTGTCATTT
Statistics
Matches: 127, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
30 3 0.02
31 121 0.95
32 2 0.02
33 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (31 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAG
Found at i:74181208 original size:62 final size:62
Alignment explanation
Indices: 74181111--74181288 Score: 275
Period size: 62 Copynumber: 2.9 Consensus size: 62
74181101 CTTGTCACTT
* * ** *
74181111 GTAGCCAAAGCTACCACTATTCACTGATCAGGTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAG
* *
74181173 GTAGCCGAAGCTACCACTTTTCACTGATTAGGTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAG
* *
74181235 GTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCA
74181289 GTTGTCATTT
Statistics
Matches: 105, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 105 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAG
Found at i:74181270 original size:93 final size:93
Alignment explanation
Indices: 74181118--74181288 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
74181108 CTTGTAGCCA
*** *
74181118 AAGCTACCACTATTCACTGATCAGGTAGCTGGTGCTACCATTTTTCACTGATCAGGTAGCCGAAG
1 AAGCTACCACTATTCACTGATCAGGTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCCGAAG
74181183 CTACCACTTTTCACTGATTAGGTAGCAG
66 CTACCACTTTTCACTGATTAGGTAGCAG
* *
74181211 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCTGAAG
1 AAGCTACCACTATTCACTGATCAGGTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCCGAAG
74181276 CTACCACTTTTCA
66 CTACCACTTTTCA
74181289 GTTGTCATTT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (93 bp):
AAGCTACCACTATTCACTGATCAGGTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCCGAAG
CTACCACTTTTCACTGATTAGGTAGCAG
Found at i:74181393 original size:50 final size:50
Alignment explanation
Indices: 74181313--74181449 Score: 238
Period size: 50 Copynumber: 2.7 Consensus size: 50
74181303 TTTGCCATTG
74181313 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTA
1 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTA
* * * *
74181363 ATCAGATAAGTGTAGCCGAAGTTATTACTTATCACTTTCATTTGTCCTTG
1 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTA
74181413 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
1 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
74181450 GTTTCCATGG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 81 1.00
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.35
Consensus pattern (50 bp):
ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTA
Found at i:74183681 original size:39 final size:39
Alignment explanation
Indices: 74183627--74183796 Score: 304
Period size: 39 Copynumber: 4.4 Consensus size: 39
74183617 GTATTTGATG
* *
74183627 TATATCCAGACTTAGGGTCCGCAGGCTATATGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
74183666 TATATCCGGATTTAGGGTCCACAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
74183705 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
74183744 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
74183783 TATATCCGGACTTA
1 TATATCCGGACTTA
74183797 AGTCCCAAAG
Statistics
Matches: 125, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 125 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:74183849 original size:39 final size:39
Alignment explanation
Indices: 74183694--74183961 Score: 240
Period size: 39 Copynumber: 6.8 Consensus size: 39
74183684 CCACAGGCTA
* * * * *
74183694 TGTGCTGGAATTATATCCGGACTTAGGGT-CCGCAGGC-TA
1 TGTGCTGGTATTATATCCGGGC-TA-AGTCCCGAAGGCATT
* * * * *
74183733 TGTGCTGGAATTATATCCGGACTTAGGGT-CCGCAGGC-TA
1 TGTGCTGGTATTATATCCGGGC-TA-AGTCCCGAAGGCATT
* * *
74183772 TGTGCTGGAATTATATCCGGACTTAAGTCCCAAAGGCATT
1 TGTGCTGGTATTATATCCGGGC-TAAGTCCCGAAGGCATT
*
74183812 TGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATT
1 TGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATT
*
74183851 TGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATT
1 TGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATT
* * * *
74183890 TATGCCGGTATTATATCCGAGCTAAAGTCCCGCAGGC-TT
1 TGTGCTGGTATTATATCCGGGCT-AAGTCCCGAAGGCATT
* *
74183929 TATGCTGGTATTATATACGGGCTTAAAGTCCCG
1 TGTGCTGGTATTATATCCGGGC-T-AAGTCCCG
74183962 CATGCTTTCT
Statistics
Matches: 209, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
38 2 0.01
39 165 0.79
40 42 0.20
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (39 bp):
TGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATT
Found at i:74187651 original size:5 final size:5
Alignment explanation
Indices: 74187641--74187674 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
74187631 TCTGTGTGTG
74187641 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
74187675 TCACAATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:74195634 original size:16 final size:16
Alignment explanation
Indices: 74195605--74195648 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
74195595 ATTTTTTATA
74195605 TACATATT-TAATCATC
1 TACATATTAT-ATCATC
* *
74195621 TATATATTATATCATT
1 TACATATTATATCATC
74195637 TACATATTATAT
1 TACATATTATAT
74195649 TTATTTTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 23 0.96
17 1 0.04
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (16 bp):
TACATATTATATCATC
Found at i:74202466 original size:2 final size:2
Alignment explanation
Indices: 74202459--74202493 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
74202449 TAGGCAGAGT
74202459 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
74202494 GTTTATTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:74204823 original size:46 final size:46
Alignment explanation
Indices: 74204747--74205106 Score: 488
Period size: 46 Copynumber: 7.8 Consensus size: 46
74204737 CGATGTCATA
* * * * *
74204747 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATATCAGGTTGCCATG
* * *** **
74204793 GTATCTTTCAACCATGGTCTTATTTATTTTCCCGTCATATTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGTTGCCATG
* *
74204840 GTATCTTTCAACCATAGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
74204886 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
74204932 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
74204978 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
74205024 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGTCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
74205070 GTATCTTTCAACCATGGTCTTACACATTCCATATCAG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
74205107 AGAGCACACT
Statistics
Matches: 289, Mismatches: 23, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
46 253 0.88
47 36 0.12
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
Found at i:74207547 original size:12 final size:13
Alignment explanation
Indices: 74207530--74207558 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
74207520 GAGATTCAAA
74207530 ATTTATTTA-TTT
1 ATTTATTTATTTT
74207542 ATTTATTTATTTT
1 ATTTATTTATTTT
74207555 ATTT
1 ATTT
74207559 TTACTAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTTATTTATTTT
Found at i:74208658 original size:13 final size:12
Alignment explanation
Indices: 74208640--74208691 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
74208630 ATTCCCCCTC
74208640 TTTCTTTCTTTTT
1 TTTCTTT-TTTTT
74208653 TTTCTTTCTTTTCT
1 TTTCTTT-TTTT-T
*
74208667 TTT-TTTTTCTT
1 TTTCTTTTTTTT
*
74208678 TTGCTTTTTTTT
1 TTTCTTTTTTTT
74208690 TT
1 TT
74208692 CAAACACTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 3 0.09
12 12 0.35
13 15 0.44
14 4 0.12
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (12 bp):
TTTCTTTTTTTT
Found at i:74208660 original size:17 final size:17
Alignment explanation
Indices: 74208638--74208691 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 17
74208628 CAATTCCCCC
74208638 TCTTTCTTTCTTTTTTT
1 TCTTTCTTTCTTTTTTT
74208655 TCTTTCTTTTCTTTTTTTT
1 TCTTTC-TTTC-TTTTTTT
74208674 TCTTTTGCTTT-TTTTTTT
1 TC-TTT-CTTTCTTTTTTT
74208692 CAAACACTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
17 6 0.18
18 11 0.33
19 9 0.27
20 6 0.18
21 1 0.03
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (17 bp):
TCTTTCTTTCTTTTTTT
Found at i:74209772 original size:46 final size:46
Alignment explanation
Indices: 74209696--74210141 Score: 663
Period size: 46 Copynumber: 9.8 Consensus size: 46
74209686 CGATGTCATA
* * * * * *
74209696 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACAC-ATTTCATATCAGGTTGCCATG
** *** *
74209742 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATG
* *
74209789 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
74209835 GTATCTTTCAACCATGGTCTTACACATTTC--ATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
74209879 GTATCTTTCAACCATGGTCTTACACATTTCATA-CACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
74209924 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
74209970 GTATCTTTCAACCATGGTCTT--ACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
74210014 GTATCTTTCAACCATGGTCTTACACA-TTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
74210059 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
74210105 GTATCTTTCAACCATGGTCTTACACATTCCATATCAG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAG
74210142 AGAGCACACT
Statistics
Matches: 376, Mismatches: 16, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
44 86 0.23
45 89 0.24
46 162 0.43
47 39 0.10
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
Found at i:74209952 original size:135 final size:136
Alignment explanation
Indices: 74209696--74210132 Score: 668
Period size: 135 Copynumber: 3.2 Consensus size: 136
74209686 CGATGTCATA
* * * * * *
74209696 GTATCTTTCAACTATGGTTTTACTCGTTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACAC-ATTTCTATCACGTTGCCATGGTATCTTTCAACCATGGTC
** * * * *
74209761 TTATTCATTTTCCCGT-CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCA
65 TTACACA-TTT--CATACACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
74209825 GGTTGCCATG
127 GGTTGCCATG
74209835 GTATCTTTCAACCATGGTCTTACACATTTC-ATCACGTTGCCATGGTATCTTTCAACCATGGTCT
1 GTATCTTTCAACCATGGTCTTACACATTTCTATCACGTTGCCATGGTATCTTTCAACCATGGTCT
74209899 TACACATTTCATACACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTT
66 TACACATTTCATACACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTT
74209964 GCCATG
131 GCCATG
*
74209970 GTATCTTTCAACCATGGTCTT--ACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTC-TATCACGTTGCCATGGTATCTTTCAACCATGGTC
74210033 TTACACA-TTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG
65 TTACACATTTCATA-CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG
74210097 TTGCCATG
129 TTGCCATG
74210105 GTATCTTTCAACCATGGTCTTACACATT
1 GTATCTTTCAACCATGGTCTTACACATT
74210133 CCATATCAGA
Statistics
Matches: 279, Mismatches: 13, Indels: 14
0.91 0.04 0.05
Matches are distributed among these distances:
133 7 0.03
134 8 0.03
135 194 0.70
136 3 0.01
137 41 0.15
138 4 0.01
139 22 0.08
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (136 bp):
GTATCTTTCAACCATGGTCTTACACATTTCTATCACGTTGCCATGGTATCTTTCAACCATGGTCT
TACACATTTCATACACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTT
GCCATG
Found at i:74215291 original size:6 final size:6
Alignment explanation
Indices: 74215280--74215317 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
74215270 ATATTCTGAA
*
74215280 TCTTTT TC-TTT TC-TTT TCTTTT TCCTTT TCTTTT TCTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTT
74215318 ACAATGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 10 0.34
6 19 0.66
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
TCTTTT
Found at i:74226919 original size:17 final size:17
Alignment explanation
Indices: 74226897--74226954 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 17
74226887 AATGACTTGT
*
74226897 TTAAAAATAGTTTTATC
1 TTAAAAATACTTTTATC
*
74226914 TTAAAAATATATTTTTATC
1 TT-AAAA-ATACTTTTATC
*
74226933 TAAAAAATACTTTT-T-
1 TTAAAAATACTTTTATC
74226948 TTAAAAA
1 TTAAAAA
74226955 AAACTAAGCA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
15 6 0.17
16 1 0.03
17 9 0.26
18 8 0.23
19 11 0.31
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (17 bp):
TTAAAAATACTTTTATC
Found at i:74226946 original size:18 final size:17
Alignment explanation
Indices: 74226899--74226955 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 17
74226889 TGACTTGTTT
*
74226899 AAAAATAGTTTTATCTTA
1 AAAAATATTTTTATC-TA
74226917 AAAATATATTTTTATCTA
1 AAAA-ATATTTTTATCTA
74226935 AAAAATACTTTTT-T-TA
1 AAAAATA-TTTTTATCTA
74226951 AAAAA
1 AAAAA
74226956 AACTAAGCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
16 7 0.19
17 4 0.11
18 15 0.42
19 10 0.28
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (17 bp):
AAAAATATTTTTATCTA
Found at i:74227211 original size:13 final size:13
Alignment explanation
Indices: 74227195--74227219 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74227185 ATTATTTACA
74227195 AAAATTAAATAAT
1 AAAATTAAATAAT
74227208 AAAATTAAATAA
1 AAAATTAAATAA
74227220 ATTTCAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAATTAAATAAT
Found at i:74229715 original size:14 final size:14
Alignment explanation
Indices: 74229696--74229722 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
74229686 TTAAAAGTTG
74229696 GCAAAGATCAATTA
1 GCAAAGATCAATTA
74229710 GCAAAGATCAATT
1 GCAAAGATCAATT
74229723 TCTCTTAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.22
Consensus pattern (14 bp):
GCAAAGATCAATTA
Found at i:74231983 original size:17 final size:17
Alignment explanation
Indices: 74231961--74231993 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74231951 AAAAATATAA
*
74231961 TAATAATATAATAGTAG
1 TAATAACATAATAGTAG
74231978 TAATAACATAATAGTA
1 TAATAACATAATAGTA
74231994 TTAGAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (17 bp):
TAATAACATAATAGTAG
Found at i:74232885 original size:39 final size:38
Alignment explanation
Indices: 74232794--74232943 Score: 201
Period size: 39 Copynumber: 3.9 Consensus size: 38
74232784 ATTCCACTCC
* * * * *
74232794 CCCCATGCTACTTTGTTTTATTATTAATCAAAACCACT
1 CCCCATACTATTTTGTTTTATTATTAATTAAAACTATT
* *
74232832 CCCCATGCTATTTTGTTTTATTGTTAATTAAAACTATTT
1 CCCCATACTATTTTGTTTTATTATTAATTAAAACTA-TT
*
74232871 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
1 CCCCATACTATTTTGTTTTATTATTAATTAAAACTA-TT
*
74232910 CCTCATACTATTTTGTTTTATTATTAATTAAAAC
1 CCCCATACTATTTTGTTTTATTATTAATTAAAAC
74232944 CATACTTTAT
Statistics
Matches: 102, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 32 0.31
39 70 0.69
ACGTcount: A:0.29, C:0.19, G:0.05, T:0.47
Consensus pattern (38 bp):
CCCCATACTATTTTGTTTTATTATTAATTAAAACTATT
Found at i:74234786 original size:210 final size:210
Alignment explanation
Indices: 74234477--74235745 Score: 1900
Period size: 210 Copynumber: 6.1 Consensus size: 210
74234467 GATGCCAAAC
* * * * **
74234477 CATCTTAGATCCGCTTCAGCATAAACATCCGAAGGCGAGATCTGCTATGTGTCTG-CTCTCCATC
1 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCT-TCCATC
* * ** * *
74234541 AAAGT-GAAGATGCCAAACTTTGATTCATCCTCTGACAATACAGAGACGAAAAATCATCTTAGAT
65 AAAGTAGAA-ATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGAT
* *
74234605 TTGCTTCATCGAAAACACGTGAAAGCCAAATCAGCTATATCTTTGATCTGTTCCCTGCCGAATAC
129 TTGCTTCATCGAAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAC
*
74234670 AGAGAGATAAGATCTAT
194 AGAGAGATAAGATCTGT
*
74234687 CATCTTGGATCTGCTTCAGCGTAAACATCTGAGGGTAAGATCTGCTATGTGTCTGCCTTCCATCA
1 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCA
*
74234752 AAGTACAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTT
66 AAGTAGAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTT
74234817 GCTTCATCGAAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAG
131 GCTTCATCGAAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAG
74234882 AGAGATAAGATCTGT
196 AGAGATAAGATCTGT
*
74234897 CATCTTGGATCTACTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCA
1 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCA
*
74234962 AAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTT
66 AAGTAGAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTT
*
74235027 GCTTCAT-TATAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACA
131 GCTTCATCGA-AAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACA
74235091 GAGAGATAAGATCTGT
195 GAGAGATAAGATCTGT
74235107 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCA
1 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCA
* * *
74235172 AAGTGGAAATGCCAGACTTCAATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTATATTT
66 AAGTAGAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTT
* *
74235237 GCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATACCTTCGATCTGCTCCCTGCCGAATACAG
131 GCTTCATCGAAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAG
74235302 AGAGATAAGATCTGT
196 AGAGATAAGATCTGT
74235317 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCA
1 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCA
* * *
74235382 AAGTGGAAATGCCAGACTTCGATTTGTTCTCTGAAAATATAGAGACGACAAATCATCTTAGATTT
66 AAGTAGAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTT
* * * * * * * ** *
74235447 GTTTCAAC-ATAAACACATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTG-TAAACACA
131 GCTTCATCGA-AAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACA
74235510 -AG-GATGCCAA-A-C---
195 GAGAGAT---AAGATCTGT
* * * *
74235522 CATCTTGGATCCGCTTCAGCATAAACATCTGAAGGTTAGATCTGTTATGTGTCTG-CTCTCCATC
1 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCT-TCCATC
* * *
74235586 AAAGT-GAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGATGACAAATCATCTTAGAT
65 AAAGTAGAA-ATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGAT
* * * * *
74235650 TTGCTTCATCGTAAACACGTGAAGGCCAAATCAACTATATCTTCGATATGCTCCCCGCCGAATAC
129 TTGCTTCATCGAAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAC
74235715 AGAGAGATAAGATCTGT
194 AGAGAGATAAGATCTGT
*
74235732 CATCTTAGATCTGC
1 CATCTTGGATCTGC
74235746 CCCGATGAAG
Statistics
Matches: 971, Mismatches: 69, Indels: 38
0.90 0.06 0.04
Matches are distributed among these distances:
204 5 0.01
205 159 0.16
206 6 0.01
207 6 0.01
208 6 0.01
209 7 0.01
210 778 0.80
211 4 0.00
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (210 bp):
CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCA
AAGTAGAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTT
GCTTCATCGAAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAG
AGAGATAAGATCTGT
Found at i:74246517 original size:13 final size:15
Alignment explanation
Indices: 74246487--74246517 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
74246477 TTCCAGATTT
74246487 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
74246502 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
74246517 T
1 T
74246518 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:74246603 original size:15 final size:14
Alignment explanation
Indices: 74246561--74246610 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
74246551 ATAACCTTGA
*
74246561 ATGCAAATGATGTG
1 ATGCAAATGATGAG
74246575 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
74246590 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
74246604 ATGCAAA
1 ATGCAAA
74246611 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:74247860 original size:15 final size:15
Alignment explanation
Indices: 74247840--74247871 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
74247830 ATCCAATTCT
74247840 CTTCTGGAACATCAA
1 CTTCTGGAACATCAA
*
74247855 CTTCTGGAATATCAA
1 CTTCTGGAACATCAA
74247870 CT
1 CT
74247872 CTCCTGGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (15 bp):
CTTCTGGAACATCAA
Found at i:74250282 original size:18 final size:20
Alignment explanation
Indices: 74250248--74250286 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
74250238 AGGTAAATAC
74250248 ATAATATATACATATTAGAA
1 ATAATATATACATATTAGAA
74250268 ATAAT-TATA-ATATTAGAA
1 ATAATATATACATATTAGAA
74250286 A
1 A
74250287 CAACTATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.53
19 4 0.21
20 5 0.26
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (20 bp):
ATAATATATACATATTAGAA
Found at i:74250384 original size:2 final size:2
Alignment explanation
Indices: 74250377--74250403 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
74250367 AATATGGGAA
74250377 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
74250404 CGATATAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:74250461 original size:2 final size:2
Alignment explanation
Indices: 74250454--74250478 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
74250444 ATATTAAAAG
74250454 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
74250479 AAATGTATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:74251108 original size:39 final size:38
Alignment explanation
Indices: 74251017--74251162 Score: 165
Period size: 38 Copynumber: 3.9 Consensus size: 38
74251007 TTCCACTCCC
* * * *
74251017 CCCATGCTACTTTGTTTTATTA-TTAATCAAAACCAC-T
1 CCCATACTATTTTGTTTTA-TAGTTAATTAAAACTACTT
* *
74251054 CCC-TGCTATTTTGTTTTATAGTTAATTAAAACTATTT
1 CCCATACTATTTTGTTTTATAGTTAATTAAAACTACTT
*
74251091 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
1 -CCCATACTATTTTGTTTTATAGTTAATTAAAACTACTT
*
74251130 CTCATACTATTTTGTTTTATTA-TTAATTAAAAC
1 CCCATACTATTTTGTTTTA-TAGTTAATTAAAAC
74251163 CATACTTTAT
Statistics
Matches: 95, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
35 2 0.02
36 25 0.26
37 4 0.04
38 32 0.34
39 32 0.34
ACGTcount: A:0.29, C:0.17, G:0.05, T:0.48
Consensus pattern (38 bp):
CCCATACTATTTTGTTTTATAGTTAATTAAAACTACTT
Found at i:74251145 original size:38 final size:37
Alignment explanation
Indices: 74251018--74251162 Score: 168
Period size: 39 Copynumber: 3.9 Consensus size: 37
74251008 TCCACTCCCC
* * * *
74251018 CCATGCTACTTTGTTTTATTATTAATCAAAACCAC-T
1 CCATACTATTTTGTTTTATTATTAATTAAAACTACTT
* * *
74251054 CCCTGCTATTTTGTTTTA-TAGTTAATTAAAACTATTT
1 CCATACTATTTTGTTTTATTA-TTAATTAAAACTACTT
*
74251091 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
1 --CCATACTATTTTGTTTTATTATTAATTAAAACTACTT
74251130 CTCATACTATTTTGTTTTATTATTAATTAAAAC
1 C-CATACTATTTTGTTTTATTATTAATTAAAAC
74251163 CATACTTTAT
Statistics
Matches: 93, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
35 2 0.02
36 27 0.29
37 2 0.02
38 30 0.32
39 31 0.33
40 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.06, T:0.48
Consensus pattern (37 bp):
CCATACTATTTTGTTTTATTATTAATTAAAACTACTT
Found at i:74252802 original size:23 final size:23
Alignment explanation
Indices: 74252758--74252833 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 23
74252748 AATATATTTT
* *
74252758 TTATTTAATAATTTTTATTTTAA
1 TTATTTAATAATTTTAAATTTAA
*
74252781 TTATTATAA-AATTTTAAATTTAT
1 TTATT-TAATAATTTTAAATTTAA
* *** *
74252804 TTTTTTAATAAACATAAATTTCA
1 TTATTTAATAATTTTAAATTTAA
74252827 TTATTTA
1 TTATTTA
74252834 TTAGATATAG
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
22 3 0.07
23 35 0.85
24 3 0.07
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (23 bp):
TTATTTAATAATTTTAAATTTAA
Found at i:74253953 original size:32 final size:33
Alignment explanation
Indices: 74253916--74253988 Score: 105
Period size: 33 Copynumber: 2.3 Consensus size: 33
74253906 AAAAGCATGT
* * *
74253916 AAATTT-TTTAATTAACATAAAAAGTTGTTACA
1 AAATTTGTCTAATTAACATAAAAACTGGTTACA
74253948 AAATTTGTCTAATTAACATAAAAACTGGTTAC-
1 AAATTTGTCTAATTAACATAAAAACTGGTTACA
74253980 AAATTTGTC
1 AAATTTGTC
74253989 CAGAGAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 15 0.41
33 22 0.59
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (33 bp):
AAATTTGTCTAATTAACATAAAAACTGGTTACA
Found at i:74254017 original size:8 final size:8
Alignment explanation
Indices: 74254004--74254031 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
74253994 AATAATTCAC
74254004 TATTAATT
1 TATTAATT
74254012 TATTAATT
1 TATTAATT
74254020 TATTAATT
1 TATTAATT
74254028 TATT
1 TATT
74254032 GATGAGATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TATTAATT
Found at i:74255098 original size:33 final size:34
Alignment explanation
Indices: 74255003--74255099 Score: 87
Period size: 33 Copynumber: 2.9 Consensus size: 34
74254993 TTAATATTTT
*
74255003 AATATATGAATTATAAATTTTAAATATTT--TTAAGC
1 AATATATAAATTAT--ATTTTAAATATTTAATTAA-C
* *
74255038 AATAAATATTAATTAT-TTATAAA-ATTTAATTAA-
1 AAT--ATATAAATTATATTTTAAATATTTAATTAAC
74255071 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
74255100 ATATAACCTT
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
31 10 0.19
32 6 0.12
33 13 0.25
34 6 0.12
35 7 0.13
37 10 0.19
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (34 bp):
AATATATAAATTATATTTTAAATATTTAATTAAC
Found at i:74259524 original size:31 final size:31
Alignment explanation
Indices: 74259473--74259547 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 31
74259463 GCGAAAAAAT
*
74259473 AAAAATAATAAAA-TTTATAGAAAAATATTA
1 AAAAATATTAAAATTTTATAGAAAAATATTA
*** *
74259503 AAAAATATTAAAATTTTATAGAATTTTTTTA
1 AAAAATATTAAAATTTTATAGAAAAATATTA
74259534 AAAAATATTAAAAT
1 AAAAATATTAAAAT
74259548 AGAAAAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 12 0.31
31 27 0.69
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (31 bp):
AAAAATATTAAAATTTTATAGAAAAATATTA
Found at i:74261695 original size:13 final size:13
Alignment explanation
Indices: 74261679--74261712 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74261669 TAAATTATAA
*
74261679 ATTATTATTAACT
1 ATTATTATTAAAT
74261692 ATTATTATTAAAT
1 ATTATTATTAAAT
*
74261705 AATATTAT
1 ATTATTAT
74261713 ATATATATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTATTATTAAAT
Found at i:74261764 original size:17 final size:17
Alignment explanation
Indices: 74261742--74261776 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
74261732 AAATGAAGAA
*
74261742 AAAGAATAAAAAGAAAC
1 AAAGAAGAAAAAGAAAC
*
74261759 AAAGAAGAATAAGAAAC
1 AAAGAAGAAAAAGAAAC
74261776 A
1 A
74261777 GAGAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.14, T:0.06
Consensus pattern (17 bp):
AAAGAAGAAAAAGAAAC
Found at i:74263401 original size:39 final size:39
Alignment explanation
Indices: 74263294--74263428 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
74263284 GACCTCGAGT
* * * *
74263294 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAT-TATTACTTCGGCTAG-TC
** ** * *
74263335 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
*
74263373 CGATGAGACACTGGGTGTCAATTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAATTATTACTTCG-GCTAGTC
*
74263412 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
74263429 CCATATTGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
38 18 0.24
39 36 0.49
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
Found at i:74269491 original size:13 final size:13
Alignment explanation
Indices: 74269475--74269508 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74269465 TAAATTATAA
*
74269475 ATTATTATTAACT
1 ATTATTATTAAAT
74269488 ATTATTATTAAAT
1 ATTATTATTAAAT
*
74269501 AATATTAT
1 ATTATTAT
74269509 ATATATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTATTATTAAAT
Found at i:74269564 original size:17 final size:17
Alignment explanation
Indices: 74269542--74269576 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
74269532 AAATGAAGAA
*
74269542 AAAGAATAAAAAGAAAC
1 AAAGAAGAAAAAGAAAC
*
74269559 AAAGAAGAATAAGAAAC
1 AAAGAAGAAAAAGAAAC
74269576 A
1 A
74269577 GAGAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.14, T:0.06
Consensus pattern (17 bp):
AAAGAAGAAAAAGAAAC
Found at i:74271202 original size:39 final size:39
Alignment explanation
Indices: 74271095--74271229 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
74271085 GACCTCGAGT
* * * *
74271095 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAT-TATTACTTCGGCTAG-TC
** ** * *
74271136 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
*
74271174 CGATGAGACACTGGGTGTCAATTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAATTATTACTTCG-GCTAGTC
*
74271213 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
74271230 CCATATTGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
38 18 0.24
39 36 0.49
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
Found at i:74274518 original size:19 final size:18
Alignment explanation
Indices: 74274494--74274546 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 18
74274484 TTATATTTAA
74274494 TTAAAATTAAAAAATATAG
1 TTAAAATTAAAAAATA-AG
*
74274513 TTAAAATATATAAAAATAAT
1 TTAAAAT-TA-AAAAATAAG
74274533 TATAAAATTAAAAA
1 T-TAAAATTAAAAA
74274547 GAATGGTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 11 0.37
20 6 0.20
21 13 0.43
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
TTAAAATTAAAAAATAAG
Found at i:74280683 original size:7 final size:8
Alignment explanation
Indices: 74280666--74280692 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
74280656 GTAAATTTAA
74280666 TTTATTTT
1 TTTATTTT
74280674 TTTATTTT
1 TTTATTTT
74280682 TTTATTTT
1 TTTATTTT
74280690 TTT
1 TTT
74280693 TGCTCCAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTATTTT
Found at i:74281052 original size:3 final size:3
Alignment explanation
Indices: 74281044--74281070 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
74281034 TTTTATTACT
74281044 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
74281071 AAAGCTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:74281410 original size:21 final size:22
Alignment explanation
Indices: 74281385--74281460 Score: 61
Period size: 21 Copynumber: 3.5 Consensus size: 22
74281375 AATTCATTAA
74281385 ATTTATTAAAATATTTATATTT
1 ATTTATTAAAATATTTATATTT
* *
74281407 -TTTAATATAATATTT-T-TTT
1 ATTTATTAAAATATTTATATTT
* *
74281426 ATTATTTTAAAATA-TTATATAT
1 ATT-TATTAAAATATTTATATTT
74281448 ATTTCGATTAAAA
1 ATTT--ATTAAAA
74281461 GTTTATTTAC
Statistics
Matches: 41, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
19 3 0.07
20 5 0.12
21 22 0.54
22 5 0.12
23 6 0.15
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (22 bp):
ATTTATTAAAATATTTATATTT
Found at i:74283271 original size:12 final size:13
Alignment explanation
Indices: 74283257--74283290 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74283247 GTGCTTTTGG
*
74283257 AAAGTACTGTGGA
1 AAAGTACTCTGGA
*
74283270 AAAGTGCTCTGGA
1 AAAGTACTCTGGA
74283283 AAAGTACT
1 AAAGTACT
74283291 TTTGAGAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (13 bp):
AAAGTACTCTGGA
Found at i:74283272 original size:26 final size:26
Alignment explanation
Indices: 74283243--74283313 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
74283233 AATACTTTTA
74283243 AAAAGTGCTTTTGGAAAGTACTGTGG
1 AAAAGTGCTTTTGGAAAGTACTGTGG
* * *
74283269 AAAAGTGC-TCTGGAAAAGTACTTTTG
1 AAAAGTGCTTTTGG-AAAGTACTGTGG
* *
74283295 AGAAGTGCTTTTGAAAAGT
1 AAAAGTGCTTTTGGAAAGT
74283314 TTAATTTAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
25 4 0.11
26 30 0.81
27 3 0.08
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (26 bp):
AAAAGTGCTTTTGGAAAGTACTGTGG
Found at i:74283863 original size:12 final size:12
Alignment explanation
Indices: 74283846--74283877 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
74283836 TACTAAAAAT
74283846 TTTACAATAGCA
1 TTTACAATAGCA
74283858 TTTACAATAGCA
1 TTTACAATAGCA
74283870 TTTACAAT
1 TTTACAAT
74283878 TTAAAGTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.38
Consensus pattern (12 bp):
TTTACAATAGCA
Found at i:74283982 original size:21 final size:21
Alignment explanation
Indices: 74283958--74283997 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74283948 TTTGATTCAC
74283958 CGTCATCATCACCATCATCGT
1 CGTCATCATCACCATCATCGT
* *
74283979 CGTCGTCATCATCATCATC
1 CGTCATCATCACCATCATC
74283998 ACTTTCTCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.38, G:0.10, T:0.30
Consensus pattern (21 bp):
CGTCATCATCACCATCATCGT
Found at i:74285526 original size:72 final size:72
Alignment explanation
Indices: 74285390--74285628 Score: 383
Period size: 72 Copynumber: 3.3 Consensus size: 72
74285380 AAAATCATAT
** *
74285390 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAATTTAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
74285453 AATCAAAC
65 AACCAAAC
* *
74285461 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAAAATATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
74285526 ACCAAAC
66 ACCAAAC
*
74285533 ATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
74285598 ACCAAAC
66 ACCAAAC
*
74285605 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
74285629 TTTAGCATTG
Statistics
Matches: 155, Mismatches: 11, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
71 26 0.17
72 129 0.83
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Done.