Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 258 of 292
Found at i:74457326 original size:48 final size:50
Alignment explanation
Indices: 74457233--74457369 Score: 125
Period size: 48 Copynumber: 2.6 Consensus size: 50
74457223 AGATAACATG
*
74457233 TAAAATATATATATATATATATAAATAATATAGTATTAAAGATATATACA
1 TAAAATATATATATATATATATAAATAATATAGAATTAAAGATATATACA
* ** * *
74457283 TAAAATA-GTATA-ATATATATACGTAATATAGAATTTAGAATATACCTAATATA
1 TAAAATATATATATATATATATAAATAATATAGAA-TTA-AAGATA--T-ATACA
* *
74457336 TTAAAAGATATATATATATAATATATATAATATA
1 -TAAAATATATATATATAT-ATATAAATAATATA
74457370 ATATAATATT
Statistics
Matches: 68, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
48 18 0.26
49 7 0.10
50 12 0.18
52 1 0.01
53 4 0.06
54 6 0.09
55 4 0.06
56 4 0.06
57 12 0.18
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (50 bp):
TAAAATATATATATATATATATAAATAATATAGAATTAAAGATATATACA
Found at i:74457368 original size:5 final size:5
Alignment explanation
Indices: 74457345--74457392 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
74457335 ATTAAAAGAT
*
74457345 ATATA TATATA ATAT- ATATA ATATA ATATA ATATTA AGA-A ATATA ATA
1 ATATA -ATATA ATATA ATATA ATATA ATATA ATA-TA ATATA ATATA ATA
74457393 ATAACAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
4 7 0.19
5 21 0.57
6 9 0.24
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:74457373 original size:25 final size:25
Alignment explanation
Indices: 74457237--74457392 Score: 64
Period size: 25 Copynumber: 6.4 Consensus size: 25
74457227 AACATGTAAA
74457237 ATATAT-ATAT-ATATATATA-AAT
1 ATATATAATATAATATATATATAAT
* *
74457259 A-ATATAGTATTAA-AGATATATACAT
1 ATATATAATA-TAATATATATATA-AT
* *
74457284 A-AAATAGTATAATATATATACGT-A-
1 ATATATAATATAATATATATA--TAAT
* * **
74457308 ATATAGAATTTAGA-ATATACCTAAT
1 ATATATAATATA-ATATATATATAAT
* *
74457333 ATAT-TAAAAGATATATATATATAAT
1 ATATATAATATA-ATATATATATAAT
*
74457358 ATATATAATATAATATA-ATATTAAG
1 ATATATAATATAATATATATA-TAAT
*
74457383 AAATATAATA
1 ATATATAATA
74457393 ATAACAAAAA
Statistics
Matches: 98, Mismatches: 21, Indels: 27
0.67 0.14 0.18
Matches are distributed among these distances:
21 4 0.04
22 3 0.03
23 8 0.08
24 14 0.14
25 62 0.63
26 6 0.06
27 1 0.01
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (25 bp):
ATATATAATATAATATATATATAAT
Found at i:74457887 original size:30 final size:30
Alignment explanation
Indices: 74457853--74457968 Score: 205
Period size: 30 Copynumber: 3.9 Consensus size: 30
74457843 GTGGTGGTGG
* *
74457853 AGTGTGGCTAGTGGAGTAGGTAGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
74457883 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
*
74457913 AGTGTGGCTAGTGGAGTTGGTGGTGAAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
74457943 AGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGTGGAGTTGGTGGTGG
74457969 CAAAAGCTAG
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 82 1.00
ACGTcount: A:0.18, C:0.06, G:0.49, T:0.27
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:74457896 original size:18 final size:18
Alignment explanation
Indices: 74457873--74457928 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
74457863 GTGGAGTAGG
74457873 TAGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
74457891 TAGT-G-G--AGT-TGG-
1 TAGTGGAGCAAGTGTGGC
*
74457903 TGGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
74457921 TAGTGGAG
1 TAGTGGAG
74457929 TTGGTGGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 3 0.10
13 4 0.13
14 4 0.13
16 4 0.13
17 4 0.13
18 11 0.37
ACGTcount: A:0.20, C:0.07, G:0.48, T:0.25
Consensus pattern (18 bp):
TAGTGGAGCAAGTGTGGC
Found at i:74458793 original size:91 final size:89
Alignment explanation
Indices: 74458675--74458842 Score: 239
Period size: 89 Copynumber: 1.9 Consensus size: 89
74458665 GAGTTGATTT
* * * *
74458675 TTGAAAATCAGAAATTGAAAACGCCTCAGCGTGTGACCCGAGGCTTAACTCACCTCTT-GCAATA
1 TTGAAAAGCAGAAATTGAAAACACCTCAGCGTGT--CCCGAGGCTCAACTCACCT-TTCACAATA
74458739 TGAGTTGATTCTTTTGAAATGTAGAAA
63 TGAGTTGATTCTTTTGAAATGTAGAAA
* *
74458766 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCACAATGTGA
1 TTGAAAAGCAGAAATTGAAAACACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCACAATATGA
*
74458831 GTTGATTTTTTT
66 GTTGATTCTTTT
74458843 TGATAAAAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
88 2 0.03
89 36 0.52
91 31 0.45
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.30
Consensus pattern (89 bp):
TTGAAAAGCAGAAATTGAAAACACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCACAATATGA
GTTGATTCTTTTGAAATGTAGAAA
Found at i:74458961 original size:167 final size:162
Alignment explanation
Indices: 74458653--74459732 Score: 582
Period size: 146 Copynumber: 6.7 Consensus size: 162
74458643 TGAATTGACT
* * **
74458653 CTCTCGCAATATGAGTTGA--TTTTTG-AAAATCAGAAATTGAAAACGCCTCAGCGTGTGACCCG
1 CTCTCACAATATGAGCTGATTTTTTTGAAAAAT-AGAAATTGAAAATACCTCAGCGTGT--CCCG
* * * *** *
74458715 AGGCTTAACTCACCTCTTGCAATATGAGTTGATTCTTTTGAAATGTAGAAATTGAAAAGCAGAAA
63 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTGAAAAGCAAAAA
* *
74458780 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCAC
128 TGGAAAACACCTCAGC--GTCCCGAGGCTCAACTCAC
* * * *
74458817 CTTTCACAATGTGAGTTGATTTTTTTTGATAAAAATAGAATTTGAAAATACCTCAGCGTGTCCCG
1 CTCTCACAATATGAGCTGA-TTTTTTTG--AAAAATAGAAATTGAAAATACCTCAGCGTGTCCCG
74458882 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTGAAGAA-CAAAA
63 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTGAA-AAGCAAAA
** * *
74458946 ATGGAAAACACCTCAGCGTCTTGAGGTTTAACTCAC
127 ATGGAAAACACCTCAGCGTCCCGAGGCTCAACTCAC
* * * * **
74458982 CTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGG
1 CTCTCACAATATGAGCTGATTTTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGG
*
74459047 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG----AC---------AAA-CAAAAATTG
66 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTGAAAAGCAAAAATGG
** * ** *
74459096 AAATTACCTCAGCATCTTGAGGTTCAACTCAC
131 AAAACACCTCAGCGTCCCGAGGCTCAACTCAC
* * * * * **
74459128 CTATCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGG
1 CTCTCACAATATGAGCTGATTTTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGG
74459193 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAA-ACAGAAATT-----G---AAAT-
66 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AACACAGAAATTGAAAAGCAAAAATG
* *
74459246 -----TACCTCAGCGTGTCCTGAGGCTCAACTCAC
130 GAAAACACCTCAGC--GTCCCGAGGCTCAACTCAC
* * * *
74459276 CTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATAGAAATGAAAAACACCTCA
1 CTCTCACAATATGAGCTGATTTTTTTGAAAAATAGAAATTG-----A-AAAT-------ACCTCA
** * * * *
74459341 GC--GTCTTGAGGTTCAACTCACCTCTCGTAATATGAGCTGATTTTTTTGAAACACATAAATTAA
53 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATT--
** * ** * *
74459404 AAAAAAAGAAATTAAAAACAGAATTTGAAAGGACCTCGACGTGTGGCCCGAGACTCAACTCAC
116 -------GAAA--AGCAA-A-AA-TGGAAAACACCTC-A-GCGT--CCCGAGGCTCAACTCAC
* * * * ** *
74459467 CTTTCGCAATATGAGTTGATTCTTTTGAAAAGCAAAAATTGAAAATACCTCAGCGTGTCCCGAGG
1 CTCTCACAATATGAGCTGATTTTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGG
* * *
74459532 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG--ATA-A-AAA-T----AG---AATTTG
66 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTGAAAAGCAAAAATGG
* * *
74459584 AAAATATCTCAGCGTGTCCTGAGGCTCAACTCAC
131 AAAACACCTCAGC--GTCCCGAGGCTCAACTCAC
** * * * * * ** *
74459618 CTCTCGTAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGA
1 CTCTCACAATATGAGCTGATTTTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGG
* * *
74459679 TTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTGAAAGACAGAAATTGAAAA
66 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTGAAAA
74459733 TACCTCAACG
Statistics
Matches: 754, Mismatches: 80, Indels: 172
0.75 0.08 0.17
Matches are distributed among these distances:
146 146 0.19
147 41 0.05
148 55 0.07
149 31 0.04
150 3 0.00
151 36 0.05
152 6 0.01
153 13 0.02
154 5 0.01
155 1 0.00
156 3 0.00
159 36 0.05
160 8 0.01
161 22 0.03
162 61 0.08
164 24 0.03
165 30 0.04
167 79 0.10
168 2 0.00
169 22 0.03
170 5 0.01
174 1 0.00
175 3 0.00
176 1 0.00
177 2 0.00
178 8 0.01
179 7 0.01
180 33 0.04
181 1 0.00
182 2 0.00
183 1 0.00
185 4 0.01
186 1 0.00
189 7 0.01
190 1 0.00
191 53 0.07
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (162 bp):
CTCTCACAATATGAGCTGATTTTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGG
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTGAAAAGCAAAAATGG
AAAACACCTCAGCGTCCCGAGGCTCAACTCAC
Found at i:74459056 original size:75 final size:74
Alignment explanation
Indices: 74458933--74459322 Score: 508
Period size: 73 Copynumber: 5.3 Consensus size: 74
74458923 AACACAGAAA
* * * * * *
74458933 TTGAAGAACAAAAATGGAAAACACCTC-A-GCGTCTTGAGGTTTAACTCACCTCTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
74458996 GCTGATTTTT
65 GTTGATTTTT
74459006 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
74459071 GTTGA--TTT
65 GTTGATTTTT
* * ** * *
74459079 TTGACAAACAAAAATTGAAATTACCTC-A-GCATCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
74459142 GCTGATTTTT
65 GTTGATTTTT
74459152 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
74459217 GTTGA--TTT
65 GTTGATTTTT
* * * *
74459225 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
74459290 GTTGATTTTT
65 GTTGATTTTT
74459300 TTGAAAAACAGAAATTGAAAATA
1 TTG-AAAACAGAAATTGAAAATA
74459323 GAAATGAAAA
Statistics
Matches: 278, Mismatches: 26, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
71 35 0.13
72 4 0.01
73 138 0.50
74 6 0.02
75 94 0.34
76 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (74 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:74459203 original size:146 final size:146
Alignment explanation
Indices: 74458939--74459322 Score: 651
Period size: 146 Copynumber: 2.6 Consensus size: 146
74458929 GAAATTGAAG
* ** * *
74458939 AACAAAAATGGAAAACACCTCAGCGTCTTGAGGTTTAACTCACCTCTCGCAATATGAGCTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGCTGATTT
74459004 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
74459069 GAGTTGATTTTTGACA
131 GAGTTGATTTTTGACA
*
74459085 AACAAAAATTGAAATTACCTCAGCATCTTGAGGTTCAACTCACCTATCGCAATATGAGCTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGCTGATTT
74459150 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
74459215 GAGTTGATTTTTGACA
131 GAGTTGATTTTTGACA
* * * *
74459231 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACTCACCTATCGCAATATGAGCTGAT
*
74459296 TTTTTTGAAAAACAGAAATTGAAAATA
64 TTTTTTGAAAGACAGAAATTGAAAATA
74459323 GAAATGAAAA
Statistics
Matches: 224, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
146 163 0.73
148 61 0.27
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (146 bp):
AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGCTGATTT
TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTGACA
Found at i:74459382 original size:86 final size:87
Alignment explanation
Indices: 74459247--74459406 Score: 232
Period size: 86 Copynumber: 1.8 Consensus size: 87
74459237 AATTGAAATT
*
74459247 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGA
1 ACCTCAGCG-GTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTTGAAAAACAGA
*
74459312 AATTGAAAATAGAAATGAAAAAC
65 AATTAAAAATAGAAATGAAAAAC
* * * * * *
74459335 ACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCGTAATATGAGCTGATTTTTTTGAAACACATAA
1 ACCTCAGCGGTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTTGAAAAACAGAA
74459399 ATTAAAAA
66 ATTAAAAA
74459407 AAAAGAAATT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
86 56 0.88
88 8 0.12
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (87 bp):
ACCTCAGCGGTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTTGAAAAACAGAA
ATTAAAAATAGAAATGAAAAAC
Found at i:74459612 original size:76 final size:73
Alignment explanation
Indices: 74459457--74459787 Score: 445
Period size: 76 Copynumber: 4.5 Consensus size: 73
74459447 TGGCCCGAGA
*
74459457 CTCAACTCACCTTTCGCAATATGAGTTGATTCTTTTGAAAAGCAAAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAAA-CAAAAATTGAAAATACCTCAGCG
*
74459522 TGTCCCGAGG
64 TGTCCTGAGG
*
74459532 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGATAAA-AATAGAATTTGAAAATATCTCAG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAA-A-AA-TTGAAAATACCTCAG
74459596 CGTGTCCTGAGG
62 CGTGTCCTGAGG
* *
74459608 CTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGACAAACAAAAATTGAAATTACCTCAGC--
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAAAAATTGAAAATACCTCAGCGT
* *
74459670 GTCTTGAGA
65 GTCCTGAGG
* * * *
74459679 TTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA-ACAAAAATTGAAAATACCTCAGCGT
*
74459744 GTCTTGAGG
65 GTCCTGAGG
*
74459753 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
74459788 TTGAAACATA
Statistics
Matches: 228, Mismatches: 19, Indels: 19
0.86 0.07 0.07
Matches are distributed among these distances:
71 35 0.15
72 27 0.12
73 16 0.07
74 49 0.21
75 46 0.20
76 55 0.24
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (73 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAAATTGAAAATACCTCAGCGTG
TCCTGAGG
Found at i:74459768 original size:145 final size:147
Alignment explanation
Indices: 74459417--74459786 Score: 460
Period size: 145 Copynumber: 2.5 Consensus size: 147
74459407 AAAAGAAATT
* ** * * *
74459417 AAAAACAGAATTTGAAAGGACCTCGACGTGTGGCCCGAGACTCAACTCACCTT-TCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAACGTGT--CCTGAGGCTCAACTCA-CTTCTCGCAATATGA
*
74459481 GTTGATTCTTTTGAAAAGCAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCT
63 GTTGA-T-TTTTGAAAAGCAAAAATTGAAAATACCTCAGCG-GTCCCGAGACTCAACTCACCTCT
*
74459546 CGCAATATGAGTTGATTTTTTGA
125 CGCAATATGAGCTGATTTTTTGA
* * * * * *
74459569 TAAAAATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGT
1 -AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGT
* ** *
74459634 TGATTTTTGACAAA-CAAAAATTGAAATTACCTCAGC-GTCTTGAGATTCAACTCACCTCTCGCA
65 TGATTTTTGA-AAAGCAAAAATTGAAAATACCTCAGCGGTCCCGAGACTCAACTCACCTCTCGCA
74459697 ATATGAGCTGATTTTTTG-
129 ATATGAGCTGATTTTTTGA
* *
74459715 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
74459780 GATTTTT
66 GATTTTT
74459787 TTTGAAACAT
Statistics
Matches: 191, Mismatches: 24, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
145 64 0.34
147 40 0.21
149 27 0.14
150 6 0.03
151 29 0.15
153 25 0.13
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (147 bp):
AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
GATTTTTGAAAAGCAAAAATTGAAAATACCTCAGCGGTCCCGAGACTCAACTCACCTCTCGCAAT
ATGAGCTGATTTTTTGA
Found at i:74459992 original size:14 final size:14
Alignment explanation
Indices: 74459973--74460020 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
74459963 GAGTTGATTT
74459973 TTAAAAAACAGAAA
1 TTAAAAAACAGAAA
**
74459987 TT-AAAAGTAGAAA
1 TTAAAAAACAGAAA
*
74460000 TTGAAAAACAGAAA
1 TTAAAAAACAGAAA
74460014 TTAAAAA
1 TTAAAAA
74460021 TACCTCGGCG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
13 11 0.39
14 17 0.61
ACGTcount: A:0.67, C:0.04, G:0.10, T:0.19
Consensus pattern (14 bp):
TTAAAAAACAGAAA
Found at i:74459998 original size:13 final size:13
Alignment explanation
Indices: 74459976--74460020 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
74459966 TTGATTTTTA
74459976 AAAAACAGAAATT
1 AAAAACAGAAATT
**
74459989 AAAAGTAGAAATT
1 AAAAACAGAAATT
74460002 GAAAAACAGAAATT
1 -AAAAACAGAAATT
74460016 AAAAA
1 AAAAA
74460021 TACCTCGGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:74460042 original size:100 final size:101
Alignment explanation
Indices: 74459797--74460092 Score: 382
Period size: 100 Copynumber: 3.0 Consensus size: 101
74459787 TTTGAAACAT
* * * * *
74459797 AAATTAAAAAACCGAAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTTACCTCTCGCAAT
1 AAATTGAAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAAT
* * *
74459862 ATGAGTTGA--TTTGAAAAGCAGAATTTGTAAGGCAA
65 ATGAGTTGATTTTTGAAAAGCAGAAATTGAAAAGCAA
* * *
74459897 AAATTGAAAAATAGAAATTGAAAATGCCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAAAA
1 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
* * * *
74459962 TGAGTTGATTTTTAAAAAACAGAAATT-AAAAGTAG
66 TGAGTTGATTTTTGAAAAGCAGAAATTGAAAAGCAA
* * * *
74459997 AAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATA
1 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
*
74460062 TGAGTTGATTTTTGAAAAGCATAAATTGAAA
66 TGAGTTGATTTTTGAAAAGCAGAAATTGAAA
74460093 TTACCTCAGC
Statistics
Matches: 168, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
99 54 0.32
100 97 0.58
101 17 0.10
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.24
Consensus pattern (101 bp):
AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAAGCAGAAATTGAAAAGCAA
Found at i:74460098 original size:73 final size:73
Alignment explanation
Indices: 74460000--74460140 Score: 210
Period size: 73 Copynumber: 1.9 Consensus size: 73
74459990 AAAGTAGAAA
* *
74460000 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
74460065 GTTGATTT
66 GTTGATTT
* * * * * *
74460073 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
74460138 GTT
66 GTT
74460141 TGTAGCGACG
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
73 60 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (73 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:74461213 original size:39 final size:40
Alignment explanation
Indices: 74461082--74461213 Score: 117
Period size: 39 Copynumber: 3.3 Consensus size: 40
74461072 ATAATTTGTA
* * *
74461082 ATAATA-ATATATACACAATATGGTATTTAAAATATATATAT
1 ATAATATATATATACACTA-ATGGTA-TTAAAAAATATATAC
* * * * *
74461123 ATATATATATATGTATA-TAATAGTATTTAAGAATATATAC
1 ATA-ATATATATATACACTAATGGTATTAAAAAATATATAC
* * *
74461163 ATAAGAAATATATA-ACTAATGGCATTAAAAAATATATAC
1 ATAATATATATATACACTAATGGTATTAAAAAATATATAC
74461202 ATAATATATATA
1 ATAATATATATA
74461214 AAATACCTAA
Statistics
Matches: 71, Mismatches: 17, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 1 0.01
39 37 0.52
40 14 0.20
41 8 0.11
42 4 0.06
43 7 0.10
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.37
Consensus pattern (40 bp):
ATAATATATATATACACTAATGGTATTAAAAAATATATAC
Found at i:74461786 original size:13 final size:14
Alignment explanation
Indices: 74461770--74461801 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
74461760 TTGGGGTAAG
74461770 TTTTTCTTT-TTTT
1 TTTTTCTTTGTTTT
74461783 TTTTTCTTTGTTTT
1 TTTTTCTTTGTTTT
74461797 TTTTT
1 TTTTT
74461802 TGGGTTAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91
Consensus pattern (14 bp):
TTTTTCTTTGTTTT
Found at i:74462948 original size:18 final size:18
Alignment explanation
Indices: 74462925--74462964 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
74462915 TCCCTCTCTA
*
74462925 TTTTTCTTTTTTCTTTTT
1 TTTTTCTTTTCTCTTTTT
74462943 TTTTTCTTTTCTCTTTTT
1 TTTTTCTTTTCTCTTTTT
74462961 TTTT
1 TTTT
74462965 AAGATGTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (18 bp):
TTTTTCTTTTCTCTTTTT
Found at i:74469076 original size:16 final size:15
Alignment explanation
Indices: 74469050--74469084 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
74469040 TGATGTGAAT
74469050 AATATAAAATATTAA
1 AATATAAAATATTAA
*
74469065 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
74469081 AATA
1 AATA
74469085 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:74469236 original size:21 final size:22
Alignment explanation
Indices: 74469198--74469241 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
74469188 ATAATACTAC
*
74469198 ATAAATATGTATATATA-TAAA
1 ATAAATACGTATATATATTAAA
74469219 ATAAATACGTGATA-ATATTAAA
1 ATAAATACGT-ATATATATTAAA
74469241 A
1 A
74469242 ATATGTACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (22 bp):
ATAAATACGTATATATATTAAA
Found at i:74469296 original size:22 final size:24
Alignment explanation
Indices: 74469237--74469305 Score: 79
Period size: 25 Copynumber: 2.9 Consensus size: 24
74469227 GTGATAATAT
* *
74469237 TAAAAATATGTACATAATATAGTG
1 TAAAAATATATACATAATATAATG
*
74469261 TAAAAAATACATACATAATATAAT-
1 T-AAAAATATATACATAATATAATG
*
74469285 T-AAAATATATACATAAGATAA
1 TAAAAATATATACATAATATAA
74469306 CATGTAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
22 18 0.46
24 2 0.05
25 19 0.49
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30
Consensus pattern (24 bp):
TAAAAATATATACATAATATAATG
Found at i:74469364 original size:25 final size:25
Alignment explanation
Indices: 74469330--74469444 Score: 83
Period size: 25 Copynumber: 4.6 Consensus size: 25
74469320 ATATAGAGAA
74469330 ATAATATAGTATTAA-AGATATATAC
1 ATAATATAGTA-TAATAGATATATAC
* *
74469355 ATAAAATAGTATAATATATATATAC
1 ATAATATAGTATAATAGATATATAC
* * *
74469380 GTAATATAGAAT-TTAGA-ATATAC
1 ATAATATAGTATAATAGATATATAC
* * * * * *
74469403 CTAATATATTAAAAGAATATATATAT
1 ATAATATAGTATAA-TAGATATATAC
*
74469429 ATAATATAATATAATA
1 ATAATATAGTATAATA
74469445 TTAAGAAATA
Statistics
Matches: 67, Mismatches: 19, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
23 14 0.21
24 6 0.09
25 31 0.46
26 16 0.24
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (25 bp):
ATAATATAGTATAATAGATATATAC
Found at i:74469445 original size:15 final size:16
Alignment explanation
Indices: 74469408--74469459 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 16
74469398 TATACCTAAT
* *
74469408 ATATTAAAAGAATATA
1 ATATTAATATAATATA
74469424 TATATATAATATAATATA
1 -ATAT-TAATATAATATA
*
74469442 ATATTAAGA-AATATA
1 ATATTAATATAATATA
74469457 ATA
1 ATA
74469460 ATAACAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 9 0.29
16 4 0.13
17 8 0.26
18 10 0.32
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (16 bp):
ATATTAATATAATATA
Found at i:74469972 original size:30 final size:30
Alignment explanation
Indices: 74469938--74470083 Score: 256
Period size: 30 Copynumber: 4.9 Consensus size: 30
74469928 GTGGTGGTGG
* *
74469938 AGTGTGGCTAGTGGAGTAGGTAGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
74469968 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
*
74469998 AGTGTGGCTAGTGGAGTTGGTGGTGAAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
*
74470028 AGTGTGGCTAGTGGAGTTGGTGGTGAAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
74470058 AGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGTGGAGTTGGTGGTGG
74470084 CAAATGCTAG
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 112 1.00
ACGTcount: A:0.18, C:0.06, G:0.49, T:0.27
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:74469981 original size:18 final size:18
Alignment explanation
Indices: 74469958--74470013 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
74469948 GTGGAGTAGG
74469958 TAGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
74469976 TAGT-G-G--AGT-TGG-
1 TAGTGGAGCAAGTGTGGC
*
74469988 TGGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
74470006 TAGTGGAG
1 TAGTGGAG
74470014 TTGGTGGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 3 0.10
13 4 0.13
14 4 0.13
16 4 0.13
17 4 0.13
18 11 0.37
ACGTcount: A:0.20, C:0.07, G:0.48, T:0.25
Consensus pattern (18 bp):
TAGTGGAGCAAGTGTGGC
Found at i:74470510 original size:18 final size:18
Alignment explanation
Indices: 74470462--74470645 Score: 101
Period size: 18 Copynumber: 10.2 Consensus size: 18
74470452 TTATTATTGA
*
74470462 ATAATTGACTGTTACCGG
1 ATAATTGACTGTTACTGG
74470480 ATAATTGACTGTTACTGG
1 ATAATTGACTGTTACTGG
* *
74470498 AT-ATTAGATTGTTACTGA
1 ATAATT-GACTGTTACTGG
* * * *
74470516 ATAACTGAATATTACTGA
1 ATAATTGACTGTTACTGG
* *
74470534 ATAATTGA-TCATTACTGA
1 ATAATTGACT-GTTACTGG
* * * *
74470552 ATAACTT-ATTGTCATTGA
1 ATAA-TTGACTGTTACTGG
*
74470570 ATGAA-TGACTGTTACTGA
1 AT-AATTGACTGTTACTGG
* * *
74470588 ATAACTTAATTGTTACTGA
1 ATAA-TTGACTGTTACTGG
* *
74470607 AT-ATCTGA-TTTTACTGA
1 ATAAT-TGACTGTTACTGG
74470624 ATAATTGACTGTTACTGG
1 ATAATTGACTGTTACTGG
74470642 ATAA
1 ATAA
74470646 CCGATCAATT
Statistics
Matches: 135, Mismatches: 19, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
17 21 0.16
18 94 0.70
19 20 0.15
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (18 bp):
ATAATTGACTGTTACTGG
Found at i:74470531 original size:36 final size:35
Alignment explanation
Indices: 74470443--74470640 Score: 146
Period size: 36 Copynumber: 5.5 Consensus size: 35
74470433 AAAGATATAA
* * * * *
74470443 AATAACTGATTATTATTGAATAATTGACTGTTACCG
1 AATAACTGAATGTTACTGAAT-ATTGATTGTTACTG
* * * *
74470479 GATAATTGACTGTTACTGGATATTAGATTGTTACTG
1 AATAACTGAATGTTACTGAATATT-GATTGTTACTG
* **
74470515 AATAACTGAATATTACTGAATAATTGATCATTACTG
1 AATAACTGAATGTTACTGAAT-ATTGATTGTTACTG
* * * * * *
74470551 AATAACTTATTGTCATTGAATGAATGACTGTTACTG
1 AATAACTGAATGTTACTGAAT-ATTGATTGTTACTG
*
74470587 AATAACTTAATTGTTACTGAATATCTGATT-TTACTG
1 AATAACTGAA-TGTTACTGAATAT-TGATTGTTACTG
* *
74470623 AATAATTGACTGTTACTG
1 AATAACTGAATGTTACTG
74470641 GATAACCGAT
Statistics
Matches: 125, Mismatches: 33, Indels: 9
0.75 0.20 0.05
Matches are distributed among these distances:
35 11 0.09
36 98 0.78
37 16 0.13
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (35 bp):
AATAACTGAATGTTACTGAATATTGATTGTTACTG
Found at i:74470563 original size:54 final size:54
Alignment explanation
Indices: 74470443--74470646 Score: 157
Period size: 54 Copynumber: 3.8 Consensus size: 54
74470433 AAAGATATAA
* * * * * *
74470443 AATAACTGATTATTATTGAATAATTGACTGTTACCGGATAA-TTGA-CTGTTACTG
1 AATAACTGATTGTTACTGAATAA-TGACTGTTACTGAATAACTTAATC-ATTACTG
* * * * *
74470497 GAT-ATTAGATTGTTACTGAATAACTGAATATTACTGAATAA-TTGATCATTACTG
1 AATAACT-GATTGTTACTGAATAA-TGACTGTTACTGAATAACTTAATCATTACTG
* * * **
74470551 AATAACTTATTGTCATTGAATGAATGACTGTTACTGAATAACTTAATTGTTACTG
1 AATAACTGATTGTTACTGAAT-AATGACTGTTACTGAATAACTTAATCATTACTG
* *
74470606 AATATCTGATT-TTACTGAATAATTGACTGTTACTGGATAAC
1 AATAACTGATTGTTACTGAATAA-TGACTGTTACTGAATAAC
74470647 CGATCAATTG
Statistics
Matches: 119, Mismatches: 25, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
53 4 0.03
54 91 0.76
55 24 0.20
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (54 bp):
AATAACTGATTGTTACTGAATAATGACTGTTACTGAATAACTTAATCATTACTG
Found at i:74472236 original size:3 final size:3
Alignment explanation
Indices: 74472221--74472452 Score: 59
Period size: 3 Copynumber: 76.3 Consensus size: 3
74472211 AAAGATTAAC
* * *
74472221 AAT AAT TAT AAT AAT AAT AAT AAT AGT AAT AAT AGTT AAGT AGGA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA-T A--AT AAT
* * * *
74472269 AAT AAT AAT -AT ATT AAT AGT ACA- AAT AAT -AT AAT AAT AGT GAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
74472312 AGT ACT AA- AGAA AAT AAT AAT ACT AAC AAT AGT AAT AA- ATAT AAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
** * * * * * * *
74472357 GGT AGT AAT AAT TAT TAT AATT AAT ACT AAT ATT AAC AAT AA- ACGT
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT A-AT
* * * *
74472403 GAT AGT AA- AAT ACCAT AAT AAT AAT AGCT AA- AAT AAT AAT AAT AAC
1 AAT AAT AAT AAT A--AT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
74472449 AAT A
1 AAT A
74472453 TTTTAAATAA
Statistics
Matches: 162, Mismatches: 46, Indels: 42
0.65 0.18 0.17
Matches are distributed among these distances:
2 13 0.08
3 133 0.82
4 12 0.07
5 3 0.02
6 1 0.01
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:74472608 original size:3 final size:3
Alignment explanation
Indices: 74472593--74472709 Score: 171
Period size: 3 Copynumber: 38.7 Consensus size: 3
74472583 TAATCATGCA
* *
74472593 AAT AAT GAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
74472641 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
74472689 AAT AGAA AAT AAT AAA AAT AA
1 AAT A-AT AAT AAT AAT AAT AA
74472710 ATGCACTTAT
Statistics
Matches: 101, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
3 99 0.98
4 2 0.02
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:74472788 original size:13 final size:12
Alignment explanation
Indices: 74472759--74472802 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
74472749 ATAAAACAAT
74472759 AATAATAATAAA
1 AATAATAATAAA
* *
74472771 TATAATAAGAGAA
1 AATAATAATA-AA
74472784 AATAATAATAAAA
1 AATAATAAT-AAA
74472797 AATAAT
1 AATAAT
74472803 TATTTTGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
12 8 0.31
13 17 0.65
14 1 0.04
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (12 bp):
AATAATAATAAA
Found at i:74473473 original size:22 final size:22
Alignment explanation
Indices: 74473448--74473528 Score: 79
Period size: 22 Copynumber: 4.0 Consensus size: 22
74473438 ATTCGAAAGT
74473448 AAGAAAGAAATAAAATAAAATC
1 AAGAAAGAAATAAAATAAAATC
*
74473470 AAGAAAGAAAT--AATAAGA--
1 AAGAAAGAAATAAAATAAAATC
* *
74473488 AAGAAA-TAA-AATA-AAA-TC
1 AAGAAAGAAATAAAATAAAATC
74473506 AAGAAAGAAATAAAATAAAATC
1 AAGAAAGAAATAAAATAAAATC
74473528 A
1 A
74473529 CCTTAGGCTT
Statistics
Matches: 45, Mismatches: 6, Indels: 16
0.67 0.09 0.24
Matches are distributed among these distances:
17 4 0.09
18 13 0.29
19 2 0.04
20 9 0.20
21 3 0.07
22 14 0.31
ACGTcount: A:0.73, C:0.04, G:0.10, T:0.14
Consensus pattern (22 bp):
AAGAAAGAAATAAAATAAAATC
Found at i:74473487 original size:36 final size:36
Alignment explanation
Indices: 74473447--74473518 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
74473437 GATTCGAAAG
74473447 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
1 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
74473483 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
1 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
74473519 AATAAAATCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.72, C:0.03, G:0.11, T:0.14
Consensus pattern (36 bp):
TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
Found at i:74473489 original size:14 final size:14
Alignment explanation
Indices: 74473470--74473496 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
74473460 AAATAAAATC
74473470 AAGAAAGAAATAAT
1 AAGAAAGAAATAAT
74473484 AAGAAAGAAATAA
1 AAGAAAGAAATAA
74473497 AATAAAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (14 bp):
AAGAAAGAAATAAT
Found at i:74481214 original size:27 final size:27
Alignment explanation
Indices: 74481184--74481245 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
74481174 TAAATTTAAA
*
74481184 AAAAAATTAATTAGACCTAAAAATTTT
1 AAAAAATTAATTAAACCTAAAAATTTT
* * * *
74481211 AAAATATTTATTAAATCTTAAAATTTT
1 AAAAAATTAATTAAACCTAAAAATTTT
*
74481238 TAAAAATT
1 AAAAAATT
74481246 TTAACCAGAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (27 bp):
AAAAAATTAATTAAACCTAAAAATTTT
Found at i:74481226 original size:19 final size:18
Alignment explanation
Indices: 74481201--74481249 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
74481191 TAATTAGACC
74481201 TAAAAATTTTAAAATATT
1 TAAAAATTTTAAAATATT
* * *
74481219 TATTAAATCTTAAAATTTT
1 TA-AAAATTTTAAAATATT
74481238 TAAAAATTTTAA
1 TAAAAATTTTAA
74481250 CCAGAACCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
TAAAAATTTTAAAATATT
Found at i:74484393 original size:30 final size:30
Alignment explanation
Indices: 74484352--74484450 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
74484342 TAGGTACAAG
74484352 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
74484382 AGGTAGTGGAGCAAGTGTGGTTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
74484412 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
74484442 TGGTGGTGG
1 TGGTGGTGG
74484451 CAAAGGCTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.17, C:0.05, G:0.49, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:74485482 original size:91 final size:91
Alignment explanation
Indices: 74485153--74485697 Score: 478
Period size: 87 Copynumber: 6.0 Consensus size: 91
74485143 AACAGACATT
* * * * * *
74485153 AAAATAGAAATTGAACATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAAAGAAATTGAAAATACCTCAG--CGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
74485217 TTGA--TTTTT-AAAACA-AAATATG--T
64 TTGATTTTTTTGAAAACAGAAAT-TGAAA
* *** * ** ** *
74485240 AAAACAGGTTTTGAAAATACCTCGGTATGTGACCCAAGGCTCAACTCACCTCTCGTAATATGAGT
1 AAAAAAGAAATTGAAAATACCTCAGCGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
74485305 TGA--TTTTTGCAAAACATAAATTGAAAA
65 TGATTTTTTTG-AAAACAGAAATTG-AAA
* *
74485332 AAAAAATATCAATTGAAAATACCTTAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAAAGA--AATTGAAAATACCTCAGCGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGA
*
74485397 GTTGATTTTTTTGACAAACATAAATTGAAA
63 GTTGATTTTTTTGA-AAACAGAAATTGAAA
*
74485427 AAAAAAGAAATTGAAAATACCTCAGCGTGT-CCTGAGGCTGAACTCACCTCTCGCAATATGAGTT
1 AAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
74485491 GATTTTTTTAGAAAAACA-AAATTTG--A
66 GATTTTTTT-G-AAAACAGAAA-TTGAAA
* * * ** * * * *
74485517 AAAACAGAATTTGAAAATACCTCAGCGTATGAGTCAAGGCTCAACTCACCACTTGCAATATGAGC
1 AAAAAAGAAATTGAAAATACCTCAGCGTGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAGT
74485582 TGATTTTTTTGAAACACAGAAATTG-AA
65 TGATTTTTTTGAAA-ACAGAAATTGAAA
* * * * * * *
74485609 GAACAA-AAATGGAAAACACCTCAGC--GT-CTTGAGGTTCAACTCACCTCTCGCAATATGAGCT
1 AAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
74485670 GATTTTTTTGAAAGACAGAAATTGAAA
66 GATTTTTTTGAAA-ACAGAAATTGAAA
74485697 A
1 A
74485698 TACCTCAACA
Statistics
Matches: 383, Mismatches: 53, Indels: 43
0.80 0.11 0.09
Matches are distributed among these distances:
85 3 0.01
86 2 0.01
87 104 0.27
88 3 0.01
89 9 0.02
90 35 0.09
91 69 0.18
92 56 0.15
93 22 0.06
94 51 0.13
95 11 0.03
96 18 0.05
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.27
Consensus pattern (91 bp):
AAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTGAAAACAGAAATTGAAA
Found at i:74485533 original size:13 final size:14
Alignment explanation
Indices: 74485501--74485533 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
74485491 GATTTTTTTA
74485501 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
74485515 GAAAAACAGAATTT
1 GAAAAACAAAATTT
74485529 GAAAA
1 GAAAA
74485534 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:74485577 original size:183 final size:180
Alignment explanation
Indices: 74485276--74485697 Score: 498
Period size: 183 Copynumber: 2.3 Consensus size: 180
74485266 ATGTGACCCA
* * *
74485276 AGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAACATAAATTGAAAAAAAAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG-AAAAAAAAAT
* * * * *
74485339 ATCAATTGAAAATACCTTAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
65 AT--ATTGAAAATACCTCAGCGTATGACCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATT
* * *
74485404 TTTTTGACAA-ACATAAATTGAAAAAAAAAGAAATTGAAAATACCTCAGCGTGTCCTG
128 TTTTTGA-AACACAGAAATTG-AAAAAAAA-AAATGGAAAACACCTCAGC--GTCCTG
* * *
74485461 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTAGAAAAACA-AAATTTGAAAAACAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-GAAAAACAGAAA-TTGAAAAAAAAA
* *
74485525 -AT-TTGAAAATACCTCAGCGTATGA-GTCAAGGCTCAACTCACCACTTGCAATATGAGCTGATT
64 TATATTGAAAATACCTCAGCGTATGACCT-AAGGCTCAACTCACCACTCGCAATATGAGCTGATT
* * *
74485587 TTTTTGAAACACAGAAATTGAAGAACAAAAATGGAAAACACCTCAGCGTCTTG
128 TTTTTGAAACACAGAAATTGAAAAAAAAAAATGGAAAACACCTCAGCGTCCTG
* * *
74485640 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA
74485698 TACCTCAACA
Statistics
Matches: 208, Mismatches: 22, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
178 14 0.07
179 44 0.21
181 17 0.08
182 9 0.04
183 67 0.32
185 30 0.14
186 2 0.01
187 15 0.07
188 10 0.05
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.27
Consensus pattern (180 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAAAAAATA
TATTGAAAATACCTCAGCGTATGACCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
TTGAAACACAGAAATTGAAAAAAAAAAATGGAAAACACCTCAGCGTCCTG
Found at i:74485673 original size:87 final size:86
Alignment explanation
Indices: 74485276--74485697 Score: 409
Period size: 91 Copynumber: 4.7 Consensus size: 86
74485266 ATGTGACCCA
* * * *
74485276 AGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAACATAAATTGAAAAAAAAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG-AAAACAGAAATTG--AAAAACAA-
* *
74485339 ATCAATTGAAAATACCTTAGCGTGTGACCTG
62 A--AATTGAAAATACCTCAGC--GT--CTTG
* * *
74485370 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAAAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGA-AAACAGAAATTG-AAAAACAA-A
*
74485435 AATTGAAAATACCTCAGCGTGTCCTG
63 AATTGAAAATACCTCAGC--GTCTTG
* * *
74485461 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTAGAAAAACA-AAATTTGAAAAACAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT-G-AAAACAGAAA-TTGAAAAACAAA
* * *
74485525 ATTTGAAAATACCTCAGCGTATGAGTCA
63 AATTGAAAATACCTCAGCGTCT---T-G
* * *
74485553 AGGCTCAACTCACCACTTGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA-ACAGAAATTGAAAAACAAAAA
* *
74485618 TGGAAAACACCTCAGCGTCTTG
65 TTGAAAATACCTCAGCGTCTTG
*
74485640 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA-ACAGAAATTGAAAA
74485698 TACCTCAACA
Statistics
Matches: 290, Mismatches: 26, Indels: 31
0.84 0.07 0.09
Matches are distributed among these distances:
87 53 0.18
88 3 0.01
90 21 0.07
91 84 0.29
92 47 0.16
93 22 0.08
94 31 0.11
95 11 0.04
96 18 0.06
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.27
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAACAGAAATTGAAAAACAAAAAT
TGAAAATACCTCAGCGTCTTG
Found at i:74486059 original size:147 final size:146
Alignment explanation
Indices: 74485610--74486044 Score: 789
Period size: 147 Copynumber: 3.0 Consensus size: 146
74485600 GAAATTGAAG
* **
74485610 AACAAAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
*
74485675 TTTTGAAAGACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
74485740 GAGTTGATTTTTGACA
131 GAGTTGATTTTTGACA
*
74485756 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGA-TT
*
74485821 TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATA
65 TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
74485886 TGAGTTGATTTTTGACA
130 TGAGTTGATTTTTGACA
74485903 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
* *
74485968 TTTTGGAAGACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
74486033 GAGTTGATTTTT
131 GAGTTGATTTTT
74486045 TCTGAAACAT
Statistics
Matches: 278, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
146 135 0.49
147 143 0.51
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (146 bp):
AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTGACA
Found at i:74486269 original size:14 final size:13
Alignment explanation
Indices: 74486234--74486278 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
74486224 TTGATTTTTG
74486234 AAAAACAGAAATT
1 AAAAACAGAAATT
*
74486247 AAAAGCAGAAATT
1 AAAAACAGAAATT
74486260 GAAAAACAGAAATT
1 -AAAAACAGAAATT
74486274 AAAAA
1 AAAAA
74486279 TACCTCGGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.69, C:0.07, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:74486299 original size:100 final size:101
Alignment explanation
Indices: 74486062--74486350 Score: 399
Period size: 100 Copynumber: 2.9 Consensus size: 101
74486052 CATAAATTAA
*
74486062 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
74486126 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * *
74486161 AAAAACAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
74486226 GATTTTTGAAAAACAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * * *
74486261 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
74486326 GATTTTT-AAAAAGCATAAATTGAAA
66 GATTTTTGAAAAA-CAGAAATTGAAA
74486351 TTACCTCAGC
Statistics
Matches: 168, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
99 66 0.39
100 84 0.50
101 18 0.11
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
Found at i:74486388 original size:73 final size:74
Alignment explanation
Indices: 74486261--74486425 Score: 244
Period size: 73 Copynumber: 2.3 Consensus size: 74
74486251 GCAGAAATTG
* * * *
74486261 AAAAA-CAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGT
1 AAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
74486325 TGA-TTTTT
66 TGATTTTTT
* * *
74486333 AAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
74486398 TGATTTTTT
66 TGATTTTTT
*
74486407 GAAAAGCATAAATTGAAAA
1 AAAAAGCATAAATTGAAAA
74486426 AACAGAAATT
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
72 5 0.06
73 55 0.67
74 22 0.27
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (74 bp):
AAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTT
Found at i:74486531 original size:177 final size:173
Alignment explanation
Indices: 74486161--74486617 Score: 634
Period size: 177 Copynumber: 2.6 Consensus size: 173
74486151 GCAAAAATTG
* * * *
74486161 AAAAACAGAAATTGAAAATACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCACAATATGAGT
1 AAAAACAAAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
74486225 TGA-TTTTTGAAAAACAGAAATT-AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGC
65 TGATTTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG-AAAACAGAAATTAAAAAGACCTCAGC
* * *
74486288 GTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGATTTTT
129 GTGCCCCGAGACTCAACTCACCTCTCGCAATACGAGTTGATTTTT
*
74486333 AAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAA-CAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
74486398 TGATTTTTTGAAAAGCATAAATTGAAAAAACAGAAATTGAAAACA-AAATTTGAAAAGACCTCAG
65 TGATTTTTTGAAAAGCAGAAATTG-AAAAGCAGAAATTGAAAACAGAAA-TTAAAAAGACCTCAG
* *
74486462 CGTATGGCTCGAGACTCAACTCACCTCTCGCAATACGAGTTGATTTTTT
128 CG--TGCCCCGAGACTCAACTCACCTCTCGCAATACGAGTTGA-TTTTT
* *
74486511 GACAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
74486576 GATTCTTTTGAAAAGTAGAAATTGAAAAGCAGAAATTGAAAA
66 GATT-TTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGAAAA
74486618 TACCTCAGCA
Statistics
Matches: 254, Mismatches: 21, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
172 5 0.02
173 55 0.22
174 22 0.09
175 20 0.08
176 13 0.05
177 114 0.45
178 25 0.10
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (173 bp):
AAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGAAAACAGAAATTAAAAAGACCTCAGCGT
GCCCCGAGACTCAACTCACCTCTCGCAATACGAGTTGATTTTT
Found at i:74486575 original size:73 final size:76
Alignment explanation
Indices: 74486434--74486604 Score: 222
Period size: 75 Copynumber: 2.3 Consensus size: 76
74486424 AAAACAGAAA
* *
74486434 TTGAAAACAAAATTTGAAAAGACCTCAGCGTATGGCTCGAGACTCAACTCACCTCTCGCAATACG
1 TTGAAAACAAAAATTGAAAAGACCTCAGCGTATGCCTCGAGACTCAACTCACCTCTCGCAATACG
74486499 AGTTGATT-TT
66 AGTTGATTCTT
* ** * * *
74486509 TTGACAACAAAAATTGAAATTACCTCAGCGTGT-CCT-GAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAACAAAAATTGAAAAGACCTCAGCGTATGCCTCGAGACTCAACTCACCTCTCGCAATACG
74486572 AGTTGATTCTT
66 AGTTGATTCTT
* *
74486583 TTGAAAAGTAGAAATTGAAAAG
1 TTGAAAA-CAAAAATTGAAAAG
74486605 CAGAAATTGA
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
73 33 0.41
74 10 0.12
75 38 0.47
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (76 bp):
TTGAAAACAAAAATTGAAAAGACCTCAGCGTATGCCTCGAGACTCAACTCACCTCTCGCAATACG
AGTTGATTCTT
Found at i:74486602 original size:14 final size:14
Alignment explanation
Indices: 74486583--74486617 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
74486573 GTTGATTCTT
*
74486583 TTGAAAAGTAGAAA
1 TTGAAAAGCAGAAA
74486597 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
74486611 TTGAAAA
1 TTGAAAA
74486618 TACCTCAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:74486746 original size:84 final size:83
Alignment explanation
Indices: 74486509--74487172 Score: 361
Period size: 87 Copynumber: 7.9 Consensus size: 83
74486499 AGTTGATTTT
* * * *
74486509 TTGACAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
*
74486574 TTGATTCTTTTGAAAAGTAGAAA
64 TTGATT-TTTTGAAAA--ATAAA
* *
74486597 TTGAAAAGCAGAAATTGAAAATACCTCAGC-ACATGAGCCGAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCGTC-T----TGAGGCTCAACTCACCTCTCGCAATA
74486661 TGAGTTGGA-TTTTTGAAAAATAAA
60 TGAGTT-GATTTTTTGAAAAATAAA
*
74486685 TTGACAAACCGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
* **** ***
74486750 TGATTTTTTTATTTTTTTTT
65 TGATTTTTTGA-AAAATAAA
* *
74486770 TTGAAAGACAGAAATTGAATATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG-AATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
74486834 GTTGATTTTTTTG-AAAA-ACA
63 GTTGA-TTTTTTGAAAAATAAA
** ** ** * * *
74486854 --GAAATTA-AAA-T--ACCT-CAGC-GTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
74486911 GATTATTT-AAAAACAGACA
66 GATTTTTTGAAAAATA-A-A
* * * ** * *
74486930 TT-AAAATAGAAATTGAACATAGCTCAGCACGTGAGC-CAAGGCTCAACTCACTTCTCGTAATAT
1 TTGAAAACAGAAATTGAAAATACCTCAG--CGT---CTTGAGGCTCAACTCACCTCTCGCAATAT
* * * * *
74486993 GAATTGGTTTTTT-TAAAAGACA
61 GAGTTGATTTTTTGAAAAATAAA
** * ** ** *
74487015 ---AAAATTGAAAAT--ACCT-CAAC-GTGTCTTGAGGCTCAACTCACCTCTTCGCAATATGAGT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTC-TCGCAATATGAGT
* *
74487073 TGA-TTTTTGAAAACAGAAT
65 TGATTTTTTGAAAA-ATAAA
** ***
74487092 TTGAAAAACAGATTTTGAAAATACCTCAGCGTGCCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 TTG-AAAACAGAAATTGAAAATACCTCAGCGT-CTTGAGGCTCAACTCACCTCTCGCAATATGAG
*
74487157 TAGATTTTTTTGAAAA
64 TTGA-TTTTTTGAAAA
74487173 CAGAAATAAA
Statistics
Matches: 444, Mismatches: 84, Indels: 97
0.71 0.13 0.16
Matches are distributed among these distances:
73 34 0.08
74 14 0.03
75 20 0.05
76 19 0.04
77 12 0.03
78 3 0.01
79 3 0.01
80 4 0.01
81 14 0.03
82 5 0.01
83 15 0.03
84 41 0.09
85 44 0.10
86 31 0.07
87 81 0.18
88 37 0.08
89 24 0.05
90 9 0.02
91 32 0.07
92 2 0.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.30
Consensus pattern (83 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTGAAAAATAAA
Found at i:74486758 original size:248 final size:242
Alignment explanation
Indices: 74486423--74487165 Score: 702
Period size: 248 Copynumber: 3.0 Consensus size: 242
74486413 CATAAATTGA
* * * *
74486423 AAAAACAGAAATTGAAAACA-AAATTTGAAAAGACCTCAG-CGTATGGCTCGAGACTCAACTCAC
1 AAAAACAGACATT-AAAACAGAAA-TTGAAAATACCTCAGACG--T-GC-CAAGGCTCAACTCAC
* * * *
74486486 CTCTCGCAATACGAGTTGATTTTTTGACA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGC
60 CTCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAATTACCTCAACGTGTCTTGAGGC
74486550 TCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATTGAAAAGCAGAAATTGA
125 TCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAAA-TAGAAATTGAAAA-CAGAAATTGA
* * *
74486615 AAATACCTCAGCACATGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGATTTTT
187 AAATACCTCAG--CGTG-CCCAAGGCTCAACTCACCTCTCGCAATATGAGTT-GATTTTT
* * **
74486675 GAAAAATA-A-ATTGACAAACCGAAATTGAAAATACCTCAG-CGT-CTTGAGGCTCAACTCACCT
1 -AAAAACAGACATT-A-AAACAGAAATTGAAAATACCTCAGACGTGC-CAAGGCTCAACTCACCT
*
74486736 CTCGCAATATGAGTTGATTTTTTTATTTTTTTTTTTGAAAGACAGAAATTG-AATATACCTCAAC
62 CTCGCAATATGAGTTG--------A-----TTTTTTGAAAGACAAAAATTGAAAT-TACCTCAAC
74486800 GTGTCTTGAGGCTCAACTCACCTCTCG-AATATGAGTTGATTTTTT-----T-G--A---AAAAC
113 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAATAGAAATTGAAAAC
*
74486853 AGAAATT-AAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTAT
178 AGAAATTGAAAATACCTCAGCGTG-CCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-T
74486917 TT
241 TT
* * * *
74486919 AAAAACAGACATTAAAATAGAAATTGAACATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTC
1 AAAAACAGACATTAAAACAGAAATTGAAAATACCTCAG-ACGT--GCCAAGGCTCAACTCACCTC
* * * * *
74486984 TCGTAATATGAATTGGTTTTTTTAAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTC
63 TCGCAATATGAGTT-GATTTTTTGAAAGACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
* * **
74487049 AACTCACCTCTTCGCAATATGAGTTGA-TTTTTGAAAACAGAATTTGAAAAACAGATTTTGAAAA
127 AACTCACCTC-TCGCAATATGAGTTGATTTTTTGAAAATAGAAATTG-AAAACAGAAATTGAAAA
*
74487113 TACCTCAGCGTGCCCAAGGCTCAACTCACCTCTCGCAATATGAGTAGATTTTT
190 TACCTCAGCGTGCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
74487166 TTGAAAACAG
Statistics
Matches: 413, Mismatches: 35, Indels: 90
0.77 0.07 0.17
Matches are distributed among these distances:
235 52 0.13
236 10 0.02
237 12 0.03
242 1 0.00
243 30 0.07
244 39 0.09
245 6 0.01
246 12 0.03
247 38 0.09
248 84 0.20
249 16 0.04
250 1 0.00
251 6 0.01
252 21 0.05
253 10 0.02
254 1 0.00
256 1 0.00
260 4 0.01
261 26 0.06
262 43 0.10
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (242 bp):
AAAAACAGACATTAAAACAGAAATTGAAAATACCTCAGACGTGCCAAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTTGAAAATAGAAATTGAAAACAGAAATTGAAAATACCTC
AGCGTGCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
Found at i:74486844 original size:73 final size:74
Alignment explanation
Indices: 74486766--74487098 Score: 268
Period size: 73 Copynumber: 4.3 Consensus size: 74
74486756 TTTTATTTTT
* *
74486766 TTTTTTGAAAGACAGAAATTGAATATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG-AAT
1 TTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
74486830 ATGAGTTGA
66 ATGAGTTGA
* * *
74486839 TTTTTTTGAAAAACAGAAATT-AAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAA
1 -TTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAA
74486903 TATGAGTTGA
65 TATGAGTTGA
* * ** * * *
74486913 TTATTT-AAAAACAGACATT-AAAATAGAAATTGAACATAG-CTCAGCACGTGAGC-CAAGGCTC
1 TTTTTTGAAAAACAGAAATTGAAAAT---ACCTCAACGT-GTCT-TG-A---G-GCTCAA--CTC
* * *
74486974 AACTCACTTCTCGTAATATGAATTGG
54 -A--C-C-TCTCGCAATATGAGTTGA
* *
74487000 TTTTTTTAAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTCGCA
1 TTTTTTGAAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC-TCGCA
74487065 ATATGAGTTGA
64 ATATGAGTTGA
*
74487076 -TTTTTG-AAAACAGAATTTGAAAA
1 TTTTTTGAAAAACAGAAATTGAAAA
74487099 ACAGATTTTG
Statistics
Matches: 203, Mismatches: 32, Indels: 49
0.71 0.11 0.17
Matches are distributed among these distances:
72 17 0.08
73 53 0.26
74 34 0.17
75 13 0.06
76 15 0.07
77 2 0.01
79 1 0.00
80 7 0.03
81 4 0.02
82 7 0.03
83 1 0.00
85 2 0.01
86 3 0.01
87 28 0.14
88 4 0.02
89 7 0.03
90 5 0.02
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (74 bp):
TTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGA
Found at i:74487088 original size:162 final size:158
Alignment explanation
Indices: 74486696--74487172 Score: 480
Period size: 160 Copynumber: 3.0 Consensus size: 158
74486686 TGACAAACCG
* * * *
74486696 AAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATT-AAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTATTT
* ******** * * * ***
74486759 TATTTTTTTTTTTGAAAGACAGAAATTGAATATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
65 AAAAACAGAATTT-AAAAACAGAAATTGAAAATACCTCAGCGTG-CCCAAGGCTCAACTCACCTC
* *
74486824 TCGAATATGAGTTGATTTTTTTGAAAAACAG
128 TCGAATATGAATTGATTTTTTTGAAAAACAA
*
74486855 AAATTAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTATTTA
1 AAATTAAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTATTTA
* * * * *
74486920 AAAACAGACA-TT-AAAATAGAAATTGAACATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTT
66 AAAACAGA-ATTTAAAAACAGAAATTGAAAATACCTCAG--CGTG-CCCAAGGCTCAACTCACCT
*
74486983 CTCGTAATATGAATTGGTTTTTTT-AAAAGACAA
127 CTCG-AATATGAATTGATTTTTTTGAAAA-ACAA
* *
74487016 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTCGCAATATGAGTTGATT-TT
1 AAATT-AAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTC-TCGCAATATGAGTTGATTATT
* **
74487080 TGAAAACAGAATTTGAAAAACAGATTTTGAAAATACCTCAGCGTGCCCAAGGCTCAACTCACCTC
64 TAAAAACAGAATTT-AAAAACAGAAATTGAAAATACCTCAGCGTGCCCAAGGCTCAACTCACCTC
* *
74487145 TCGCAATATGAGTAGATTTTTTTGAAAA
128 TCG-AATATGAATTGATTTTTTTGAAAA
74487173 CAGAAATAAA
Statistics
Matches: 262, Mismatches: 43, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
158 30 0.11
159 5 0.02
160 71 0.27
161 63 0.24
162 55 0.21
163 18 0.07
164 20 0.08
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (158 bp):
AAATTAAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTATTTA
AAAACAGAATTTAAAAACAGAAATTGAAAATACCTCAGCGTGCCCAAGGCTCAACTCACCTCTCG
AATATGAATTGATTTTTTTGAAAAACAA
Found at i:74487101 original size:14 final size:14
Alignment explanation
Indices: 74487078--74487112 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
74487068 TGAGTTGATT
74487078 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
74487091 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
74487105 TTTGAAAA
1 TTTGAAAA
74487113 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:74490636 original size:6 final size:6
Alignment explanation
Indices: 74490625--74490658 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
74490615 TTATTTATTG
*
74490625 AAATAA AAATAA TAAATAA AAATAA AAAGAA AAA
1 AAATAA AAATAA -AAATAA AAATAA AAATAA AAA
74490659 ACTAATATCG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:74490643 original size:13 final size:12
Alignment explanation
Indices: 74490625--74490658 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
74490615 TTATTTATTG
74490625 AAATAAAAATAA
1 AAATAAAAATAA
74490637 TAAATAAAAATAA
1 -AAATAAAAATAA
*
74490650 AAAGAAAAA
1 AAATAAAAA
74490659 ACTAATATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (12 bp):
AAATAAAAATAA
Found at i:74491548 original size:18 final size:18
Alignment explanation
Indices: 74491525--74491578 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
74491515 ACAAGTGGTG
74491525 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
74491543 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
74491555 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
74491573 GTGGAG
1 GTGGAG
74491579 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:74491561 original size:30 final size:30
Alignment explanation
Indices: 74491520--74491618 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
74491510 TAGGTACAAG
74491520 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
74491550 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
74491580 TGGTGGTGGAGTAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
74491610 TGGTGGTGG
1 TGGTGGTGG
74491619 CAAAGGCTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.17, C:0.05, G:0.49, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:74505989 original size:3 final size:3
Alignment explanation
Indices: 74505981--74506009 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
74505971 TAAGAAATAT
74505981 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
74506010 TTGATAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:74507353 original size:17 final size:18
Alignment explanation
Indices: 74507313--74507354 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
74507303 TTGTTATAAC
74507313 AAAATTATTATTTAAATAT
1 AAAA-TATTATTTAAATAT
* *
74507332 TAAATATT-TTTAATTAT
1 AAAATATTATTTAAATAT
74507349 AAAATA
1 AAAATA
74507355 ATAAAAAAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 13 0.65
18 4 0.20
19 3 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AAAATATTATTTAAATAT
Found at i:74509183 original size:18 final size:18
Alignment explanation
Indices: 74509144--74509185 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
74509134 TCTCTCAAAG
* *
74509144 TTTTTCTCCTTTTATTTG
1 TTTTCCTCCTTTTATTTA
74509162 TTTTCCTCC-TTTATTCTA
1 TTTTCCTCCTTTTATT-TA
74509180 TTTTCC
1 TTTTCC
74509186 AACACAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.07, C:0.24, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTCCTCCTTTTATTTA
Found at i:74519255 original size:16 final size:16
Alignment explanation
Indices: 74519233--74519287 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
74519223 GTTTGGTTCA
*
74519233 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
* *
74519249 TTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
74519265 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
74519281 CTGTAAT
1 CTGTAAT
74519288 CAATAATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:74519477 original size:25 final size:25
Alignment explanation
Indices: 74519433--74519483 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
74519423 GTTGATAGAT
74519433 GATTATTGTTATTAAA-TTTTAATAA
1 GATTATTGTTA-TAAATTTTTAATAA
74519458 GATTATTGTTA-AATATTTTTTAATAA
1 GATTATTGTTATAA-A-TTTTTAATAA
74519484 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
23 2 0.09
24 1 0.04
25 11 0.48
26 9 0.39
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (25 bp):
GATTATTGTTATAAATTTTTAATAA
Found at i:74519544 original size:24 final size:21
Alignment explanation
Indices: 74519523--74519581 Score: 75
Period size: 20 Copynumber: 2.8 Consensus size: 21
74519513 TAACATAATT
74519523 ATTATTAAATATAATTTAATAA
1 ATTATT-AATATAATTTAATAA
* *
74519545 AATAAT-ATATAATTTAATAA
1 ATTATTAATATAATTTAATAA
74519565 CATTATTAATATAATTT
1 -ATTATTAATATAATTT
74519582 TTAATAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 14 0.45
21 4 0.13
22 13 0.42
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
ATTATTAATATAATTTAATAA
Found at i:74519545 original size:55 final size:54
Alignment explanation
Indices: 74519485--74519605 Score: 127
Period size: 57 Copynumber: 2.2 Consensus size: 54
74519475 TTTTAATAAA
* * *
74519485 AATAAAAATAAATAATTTAATCATATT-TTAACATAATTATTATTAAATATAATTT
1 AATAAAAATAAATAATTTAATAACATTATTAACATAATTATTAAT-AATA-AATTT
* * * *
74519540 AATAAAATAATATATAATTTAATAACATTATTAATATAATTTTTAATAATAATTTT
1 AAT-AAA-AATAAATAATTTAATAACATTATTAACATAATTATTAATAATAAATTT
74519596 AATATAAAAT
1 AATA-AAAAT
74519606 TATTATTATG
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
55 7 0.13
56 12 0.22
57 22 0.40
58 14 0.25
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (54 bp):
AATAAAAATAAATAATTTAATAACATTATTAACATAATTATTAATAATAAATTT
Found at i:74519584 original size:24 final size:24
Alignment explanation
Indices: 74519557--74519602 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
74519547 TAATATATAA
*
74519557 TTTAATAA-CATTATTAATATAATT
1 TTTAATAATAATT-TTAATATAATT
74519581 TTTAATAATAATTTTAATATAA
1 TTTAATAATAATTTTAATATAA
74519603 AATTATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
TTTAATAATAATTTTAATATAATT
Found at i:74521965 original size:14 final size:14
Alignment explanation
Indices: 74521946--74521974 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
74521936 TATACTGCAG
74521946 ATACTCAAGCAAAT
1 ATACTCAAGCAAAT
74521960 ATACTCAAGCAAAT
1 ATACTCAAGCAAAT
74521974 A
1 A
74521975 AGTTATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.21, G:0.07, T:0.21
Consensus pattern (14 bp):
ATACTCAAGCAAAT
Found at i:74522005 original size:40 final size:40
Alignment explanation
Indices: 74521960--74522035 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
74521950 TCAAGCAAAT
74521960 ATACTCAAGCAAATAAGTTATTTTGCCAATTTAGATGCAG
1 ATACTCAAGCAAATAAGTTATTTTGCCAATTTAGATGCAG
74522000 ATACTCAAGCAAATAAGTTATTTTGCCAATTTAGAT
1 ATACTCAAGCAAATAAGTTATTTTGCCAATTTAGAT
74522036 AGAGTTCCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.34
Consensus pattern (40 bp):
ATACTCAAGCAAATAAGTTATTTTGCCAATTTAGATGCAG
Found at i:74525036 original size:15 final size:15
Alignment explanation
Indices: 74525013--74525044 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
74525003 AGGGGTAATG
74525013 TTGCAACATTAAGGA
1 TTGCAACATTAAGGA
*
74525028 TTGCGACATTAAGGA
1 TTGCAACATTAAGGA
74525043 TT
1 TT
74525045 CATGTCACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (15 bp):
TTGCAACATTAAGGA
Found at i:74525624 original size:13 final size:13
Alignment explanation
Indices: 74525606--74525633 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
74525596 GCCAATCACT
74525606 TTATGACTTTAAA
1 TTATGACTTTAAA
74525619 TTATGACTTTAAA
1 TTATGACTTTAAA
74525632 TT
1 TT
74525634 TTATGGTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (13 bp):
TTATGACTTTAAA
Found at i:74531911 original size:2 final size:2
Alignment explanation
Indices: 74531904--74531931 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
74531894 ATATCAAAAG
74531904 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74531932 GCATAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74536521 original size:44 final size:45
Alignment explanation
Indices: 74536436--74536527 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 45
74536426 AAATTGTAAT
*
74536436 TTAAATTATAATATTTTTAAATGTGTAATAATTTTCATAACTTCTA
1 TTAAATTATAATATTTCTAAA-GTGTAATAATTTTCATAACTTCTA
74536482 TTAAATTATAATTATTTCTAAA-TGT-ATAATTATT-ATAACTTCTA
1 TTAAATTATAA-TATTTCTAAAGTGTAATAATT-TTCATAACTTCTA
74536526 TT
1 TT
74536528 CTACTTTAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
44 18 0.42
45 5 0.12
46 11 0.26
47 9 0.21
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.51
Consensus pattern (45 bp):
TTAAATTATAATATTTCTAAAGTGTAATAATTTTCATAACTTCTA
Found at i:74539574 original size:15 final size:15
Alignment explanation
Indices: 74539554--74539582 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
74539544 ACTAAAACCT
74539554 ACGCTTGAATTTTGA
1 ACGCTTGAATTTTGA
74539569 ACGCTTGAATTTTG
1 ACGCTTGAATTTTG
74539583 TTTTTCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (15 bp):
ACGCTTGAATTTTGA
Found at i:74539633 original size:4 final size:4
Alignment explanation
Indices: 74539624--74539657 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
74539614 CTTTCAAAAT
74539624 CACC CACC CACC CACC CACC CACC CA-C CACC CAC
1 CACC CACC CACC CACC CACC CACC CACC CACC CAC
74539658 AGTCAGTCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 26 0.90
ACGTcount: A:0.26, C:0.74, G:0.00, T:0.00
Consensus pattern (4 bp):
CACC
Found at i:74540084 original size:4 final size:4
Alignment explanation
Indices: 74540055--74540095 Score: 50
Period size: 4 Copynumber: 10.2 Consensus size: 4
74540045 CATCGACCAT
74540055 CATA CATAA CATA CACT- CAT- CATA CATA CATA CATA CATA C
1 CATA CAT-A CATA CA-TA CATA CATA CATA CATA CATA CATA C
74540096 CTTATCAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 4 0.12
4 25 0.74
5 5 0.15
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:74541940 original size:33 final size:33
Alignment explanation
Indices: 74541863--74541941 Score: 122
Period size: 33 Copynumber: 2.4 Consensus size: 33
74541853 TACATCAACA
*
74541863 TGAATCAAGGGTATATGTCTCATCCTGGGTATG
1 TGAATCAAGGGTATATGTCTCACCCTGGGTATG
* *
74541896 CGAGTCAAGGGTATATGTCTCACCCTGGGTATG
1 TGAATCAAGGGTATATGTCTCACCCTGGGTATG
*
74541929 TGAATCCAGGGTA
1 TGAATCAAGGGTA
74541942 CATGGTGGAC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (33 bp):
TGAATCAAGGGTATATGTCTCACCCTGGGTATG
Found at i:74544995 original size:29 final size:30
Alignment explanation
Indices: 74544962--74545025 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 30
74544952 ATTTTGATTC
*
74544962 TAATTAATAA-AAATATTTTTATCTATATT
1 TAATTAATAATAAATATTTATATCTATATT
*
74544991 TAATT-ATAATAAATATTTATATTTATATT
1 TAATTAATAATAAATATTTATATCTATATT
74545020 TAATTA
1 TAATTA
74545026 GAATTTTCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 4 0.13
29 27 0.87
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (30 bp):
TAATTAATAATAAATATTTATATCTATATT
Found at i:74550422 original size:34 final size:34
Alignment explanation
Indices: 74550363--74550429 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
74550353 GTAAAATTTA
*
74550363 TTTTTTATATTATAGTTAAATTTAAATGTATATT
1 TTTTTTATATTATAGTTAAATTTAAATGAATATT
74550397 TTTTTATATATTATAGTTAAA-TTAAATGAATAT
1 TTTTT-TATATTATAGTTAAATTTAAATGAATAT
74550430 ATGAATCAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 16 0.52
35 15 0.48
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (34 bp):
TTTTTTATATTATAGTTAAATTTAAATGAATATT
Found at i:74555278 original size:12 final size:12
Alignment explanation
Indices: 74555261--74555292 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
74555251 CTTTAAGACC
74555261 AAAAAAAGAAAA
1 AAAAAAAGAAAA
74555273 AAAAAAAGAAAA
1 AAAAAAAGAAAA
74555285 AAAGAAAA
1 AAA-AAAA
74555293 AGGAGAGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:74556510 original size:66 final size:66
Alignment explanation
Indices: 74556410--74556536 Score: 227
Period size: 66 Copynumber: 1.9 Consensus size: 66
74556400 CATTCATATA
*
74556410 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
74556475 C
66 C
* *
74556476 ATAACACATCTGGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
74556537 TAAGCATAGA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:74556979 original size:85 final size:88
Alignment explanation
Indices: 74556818--74557411 Score: 287
Period size: 86 Copynumber: 6.8 Consensus size: 88
74556808 ATTTACAAAC
* * *
74556818 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAA
1 CTTAAACCCCTAATCAGTAGGGTAACAGACCGAAGATTTACAGATCTTAACCCCCTAAGCAGTAA
74556883 GGAAACAGATCGAAGACGAAGGG
66 GGAAACAGATCGAAGACGAAGGG
* * *
74556906 TCTTAAACCCCTAATCGGTAGGGTAACAGACCG-A-A-TTGCAGATCTT-ATCCCCTAAGCAGTA
1 -CTTAAACCCCTAATCAGTAGGGTAACAGACCGAAGATTTACAGATCTTAACCCCCTAAGCAGTA
* * *
74556967 GGGAAACAGATCGAAGATGATGGG
65 AGGAAACAGATCGAAGACGAAGGG
* * * *
74556991 CTTTAACCCCCTAAGT-AGTAGGGTAACA-AGCTG-A-ATTTACA-AGCCTTAAACCCCTAAGCA
1 C-TTAAACCCCTAA-TCAGTAGGGTAACAGA-CCGAAGATTTACAGA-TCTTAACCCCCTAAGCA
* * * ** **
74557051 GTAGGGTAACAG-GCTGAAGATTTACAGAT
62 GTAAGGAAACAGATC-GAAGA-CGA-AGGG
* * * * * * ** * * * *
74557080 CTTAACCCCCTAAGCAGTAGGGAAATAGATCAAAGA-CGA-AGGGTCTTAAACCCCTAATCGGTA
1 CTTAAACCCCTAATCAGTAGGGTAACAGACCGAAGATTTACA-GATCTTAACCCCCTAAGCAGTA
* * * ** * **
74557143 GGGTAACAGACCGAA-TTGCAGAT
65 AGGAAACAGATCGAAGACGAAGGG
** * * * * * **
74557166 CTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA-TGGGCTTTAACCCCCTAAGCAGTA
1 CTTAAACCCCTAATCAGTAGGGTAACAGACCGAAGATTTACAGATC-TTAACCCCCTAAGCAGTA
* * * ** * *
74557229 GGGTAACA-AGCCGATTTA-TAA-GC
65 AGGAAACAGA-TCGA-AGACGAAGGG
* * * * *
74557252 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCTCTAAGCAGTAG
1 CTTAAACCCCTAATCAGTAGGGTAACAGACCGAAGATTTACAGATCTTAACCCCCTAAGCAGTAA
* *
74557317 GGAAACAGATCGAAGATGATGGG
66 GGAAACAGATCGAAGACGAAGGG
* * *
74557340 CTTTAACCCCCTAAACAGTAGGGTAACA-AGCC-AA-ATTTACA-AGCCTTAACCCCCTAAGCAG
1 C-TTAAACCCCTAATCAGTAGGGTAACAGA-CCGAAGATTTACAGA-TCTTAACCCCCTAAGCAG
* *
74557401 TAGGGTAACAG
63 TAAGGAAACAG
74557412 GCTGAAGATT
Statistics
Matches: 400, Mismatches: 77, Indels: 58
0.75 0.14 0.11
Matches are distributed among these distances:
84 2 0.00
85 66 0.17
86 117 0.29
87 93 0.23
88 33 0.08
89 87 0.22
90 2 0.00
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (88 bp):
CTTAAACCCCTAATCAGTAGGGTAACAGACCGAAGATTTACAGATCTTAACCCCCTAAGCAGTAA
GGAAACAGATCGAAGACGAAGGG
Found at i:74557086 original size:217 final size:218
Alignment explanation
Indices: 74556587--74557411 Score: 1363
Period size: 217 Copynumber: 3.8 Consensus size: 218
74556577 CTAGAATCAG
*
74556587 TGAATTCACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
1 TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
* * *
74556652 CCCTAAGCAGTAGGGAAATAGATCGAAGACGAATGGTCTTAAACCCCTAATCGGTAGAGTAACAG
66 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
* *
74556717 ACCGAATTGTAGATCTTATCCCCCTAAGTAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACC
131 ACCGAATTGCAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACC
74556782 CCCTAAGTAGTAGGGTAACAAGC
196 CCCTAAGTAGTAGGGTAACAAGC
*
74556805 TGAATTTACAAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
1 TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
*
74556870 CCCTAAGCAGTAAGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
66 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
74556935 ACCGAATTGCAGATCTTAT-CCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACC
131 ACCGAATTGCAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACC
74556999 CCCTAAGTAGTAGGGTAACAAGC
196 CCCTAAGTAGTAGGGTAACAAGC
74557022 TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
1 TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
* *
74557087 CCCTAAGCAGTAGGGAAATAGATCAAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
66 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
74557152 ACCGAATTGCAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACC
131 ACCGAATTGCAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACC
*
74557217 CCCTAAGCAGTAGGGTAACAAGC
196 CCCTAAGTAGTAGGGTAACAAGC
* *
74557240 CG-ATTTATAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
1 TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
* * * * * *
74557304 CTCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG-CTTTAACCCCCTAAACAGTAGGGTAACA
66 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTC-TTAAACCCCTAATCGGTAGGGTAACA
* * * * *
74557368 -AGCCAAATTTACA-AGCCTTAACCCCCTAAGCAGTAGGGTAACAG
130 GA-CCGAA-TTGCAGA-TCTTATCCCCCTAAGCAGTAGGGAAACAG
74557412 GCTGAAGATT
Statistics
Matches: 574, Mismatches: 28, Indels: 10
0.94 0.05 0.02
Matches are distributed among these distances:
216 2 0.00
217 332 0.58
218 240 0.42
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (218 bp):
TGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACC
CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAG
ACCGAATTGCAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACC
CCCTAAGTAGTAGGGTAACAAGC
Found at i:74557287 original size:86 final size:85
Alignment explanation
Indices: 74556601--74557325 Score: 246
Period size: 86 Copynumber: 8.3 Consensus size: 85
74556591 TTCACAAGCC
* * * * * *
74556601 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTA-CAGATCTTAACCCCCTAAGCAGTAG
1 TTAACCCCCTAAGCAGTAGGGTAACAGAC---CGATTTAGAAG-CCTTAAACCCCTAAGCAGTAG
* * * *
74556665 GGAAATAGATCGAAGACGAATG-G-T
62 GGTAACAGCT-GAAGATG-ATGAGCT
* * * * * ** *
74556689 CTTAAACCCCTAATCGGTAGAGTAACAGACCGAATTGTAG-A-TCTTATCCCCCTAAGTAGTAGG
1 -TTAACCCCCTAAGCAGTAGGGTAACAGACCG-ATT-TAGAAGCCTTAAACCCCTAAGCAGTAGG
* * *
74556752 GAAACAGATCGAAGATGATGGGCT
63 GTAACAGCT-GAAGATGATGAGCT
* * * *
74556776 TTAACCCCCTAAGTAGTAGGGTAACA-AGCTGAATTTACAAACCTTAAACCCCTAAGCAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGTAACAGA-CCG-ATTTAGAAGCCTTAAACCCCTAAGCAGTAGGG
* * *
74556840 TAACAGGCTGAAGAT-TTACAGAT
64 TAACA-GCTGAAGATGAT-GAGCT
* * * ** * * *
74556863 CTTAACCCCCTAAGCAGTAAGGAAACAGATCGA-AGACGAAGGGTCTTAAACCCCTAATCGGTAG
1 -TTAACCCCCTAAGCAGTAGGGTAACAGACCGATTTA-GAA--GCCTTAAACCCCTAAGCAGTAG
* * *
74556927 GGTAACAGACCGAA-TTGCA-GATC-
62 GGTAACAG-CTGAAGATG-ATGAGCT
* * * ** * * * *
74556950 TT-ATCCCCTAAGCAGTAGGGAAACAGATCGA-AGATGATGGGCTTTAACCCCCTAAGTAGTAGG
1 TTAACCCCCTAAGCAGTAGGGTAACAGACCGATTTA-GA--AGCCTTAAACCCCTAAGCAGTAGG
* * ** *
74557013 GTAACAAGCTGAA-TTTACAAGCC
63 GTAAC-AGCTGAAGATGATGAGCT
* * * * * *
74557036 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTA-CAGATCTTAACCCCCTAAGCAGTAG
1 TTAACCCCCTAAGCAGTAGGGTAACAGAC---CGATTTAGAAG-CCTTAAACCCCTAAGCAGTAG
* * * * * * *
74557100 GGAAATAGATCAAAGACGAAG-GGT
62 GGTAACAGCT-GAAGATGATGAGCT
* * * * * * **
74557124 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAATT-GCAGATCTTATCCCCCTAAGCAGTAGGG
1 -TTAACCCCCTAAGCAGTAGGGTAACAGACCGATTTAGAAG-CCTTAAACCCCTAAGCAGTAGGG
* * *
74557188 AAACAGATCGAAGATGATGGGCT
64 TAACAGCT-GAAGATGATGAGCT
*
74557211 TTAACCCCCTAAGCAGTAGGGTAACA-AGCCGATTTATAAGCCTTAAACCCCTAAGCAGTAGGGT
1 TTAACCCCCTAAGCAGTAGGGTAACAGA-CCGATTTAGAAGCCTTAAACCCCTAAGCAGTAGGGT
* * *
74557275 AACAGGCTGAAGAT-TTACAGAT
65 AACA-GCTGAAGATGAT-GAGCT
* *
74557297 CTTAACCCTCTAAGCAGTAGGGAAACAGA
1 -TTAACCCCCTAAGCAGTAGGGTAACAGA
74557326 TCGAAGATGA
Statistics
Matches: 487, Mismatches: 109, Indels: 81
0.72 0.16 0.12
Matches are distributed among these distances:
84 1 0.00
85 70 0.14
86 179 0.37
87 94 0.19
88 58 0.12
89 82 0.17
90 2 0.00
91 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (85 bp):
TTAACCCCCTAAGCAGTAGGGTAACAGACCGATTTAGAAGCCTTAAACCCCTAAGCAGTAGGGTA
ACAGCTGAAGATGATGAGCT
Found at i:74557296 original size:131 final size:132
Alignment explanation
Indices: 74556589--74557499 Score: 579
Period size: 132 Copynumber: 7.0 Consensus size: 132
74556579 AGAATCAGTG
*
74556589 AATTCACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
1 AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
* * * * * * *
74556654 CTAAGCAGTAGGGAAATAGATCGAAGACGAATGGTC-TTAAACCCCTAATCGGTAGAGTAAC-AG
66 CTAAGCAGTAGGGAAACAGATCGAAGATG-ATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
*
74556717 ACCG
130 -CCA
* * ** * * * * * **
74556721 AATTGTA-GA-TCTTATCCCCCTAAGTAGTAGGGAAACA-GATCGAAGA-TGA-TGGGCTTTAAC
1 AATT-TACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATC-TTAAC
* * * * * **** * *
74556781 CCCCTAAGTAGTAGGGTAACA-AGCTGAA-TTTACAAACCTTAAACCCCTAAGCAGTAGGGTAAC
63 CCCCTAAGCAGTAGGGAAACAGATC-GAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAAC
* *
74556844 AGGCTGA
127 AAGC-CA
* * * * * ** *
74556851 AGATTTAC-AGATCTTAACCCCCTAAGCAGTAAGGAAACA-GATCGAAGA-CGA-AGGGTCTTAA
1 A-ATTTACAAG-CCTTAAACCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACA-GATCTTAA
* * * * * * ** * *
74556912 ACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCA-GATC-TT-ATCCCCTAAGCAGTAGGGAAA
62 CCCCCTAAGCAGTAGGGAAACAGATCGAAGATG-ATGGGCTTTAACCCCCTAAGCAGTAGGGTAA
* *
74556973 CAGATCGA
126 CA-AGCCA
* *** * * * * * *
74556981 AGA-TGATGGGCTTTAACCCCCTAAGTAGTAGGGTAACAAGCTG-A-ATTTACA-AGCCTTAAAC
1 A-ATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA-TCTTAACC
* * * ** *
74557042 CCCTAAGCAGTAGGGTAACAG-GCTGAAGAT-TTACAGATCTTAACCCCCTAAGCAGTAGGG-AA
64 CCCTAAGCAGTAGGGAAACAGATC-GAAGATGAT-GGGCT-TTAACCCCCTAAGCAGTAGGGTAA
*
74557104 -ATAGATCA
126 CA-AG-CCA
* * * * * * * *
74557112 AA--GACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACCG-A-A-TTGCAGATCTTATC
1 AATTTAC-AA--GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAAC
74557172 CCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA
63 CCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA
74557237 AGCC-
128 AGCCA
* * *
74557241 GATTTATAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCT
1 AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
*
74557306 CTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAACAGTAGGGTAACAAGC
66 CTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGC
74557371 CA
131 CA
*
74557373 AATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
1 AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
* * * * * * * *
74557438 TTAAGTAGTTGAGAAATAGATCGAAGATGATGGGCCTTAAACCCCTAAGTAGTAGGGTAACA
66 CTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA
74557500 GGCTGGAAAT
Statistics
Matches: 616, Mismatches: 121, Indels: 84
0.75 0.15 0.10
Matches are distributed among these distances:
127 2 0.00
128 62 0.10
129 60 0.10
130 92 0.15
131 161 0.26
132 232 0.38
133 7 0.01
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (132 bp):
AATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
CTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGC
CA
Found at i:74557361 original size:44 final size:44
Alignment explanation
Indices: 74556601--74557500 Score: 372
Period size: 44 Copynumber: 20.6 Consensus size: 44
74556591 TTCACAAGCC
* * * * *
74556601 TTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGAT-TTACAGAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGAT-GAGCT
* * *
74556645 CTTAACCCCCTAAGCAGTAGGGAAATAGATCGAAGACGAATG-G-T
1 -TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATG-ATGAGCT
* * * * * * *
74556689 CTTAAACCCCTAATCGGTAGAGTAACAGACCGAA-TTG-T-AGAT
1 -TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCT
* * * *
74556731 CTTATCCCCCTAAGTAGTAGGGAAACAGATCGAAGATGATGGGCT
1 -TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCT
* * * * ** * *
74556776 TTAACCCCCTAAGTAGTAGGGTAACA-AGCTGAA-TTTACAAACC
1 TTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGATGAGCT
* * * * *
74556819 TTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGAT-TTACAGAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGAT-GAGCT
* * * * *
74556863 CTTAACCCCCTAAGCAGTAAGGAAACAGATCGAAGACGAAG-GGT
1 -TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCT
* * * * * *
74556907 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCA-GATC-
1 -TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATG-ATGAGCT
* * *
74556950 TT-ATCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCT
1 TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCT
* * * * ** *
74556993 TTAACCCCCTAAGTAGTAGGGTAACA-AGCTGAA-TTTACAAGCC
1 TTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGATGAGCT
* * * * *
74557036 TTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGAT-TTACAGAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGAT-GAGCT
* * * * * *
74557080 CTTAACCCCCTAAGCAGTAGGGAAATAGATCAAAGACGAAG-GGT
1 -TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCT
* * * * * *
74557124 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCA-GATC-
1 -TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATG-ATGAGCT
* * *
74557167 TTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCT
1 TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCT
* * * * *
74557211 TTAACCCCCTAAGCAGTAGGGTAACA-AGCCG-A-TTTATAAGCC
1 TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGATGAGCT
* * * * *
74557253 TTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGAT-TTACAGAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGAT-GAGCT
* * *
74557297 CTTAACCCTCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCT
1 -TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCT
* * * * ** *
74557342 TTAACCCCCTAAACAGTAGGGTAACA-AGCCAA-ATTTACAAGCC
1 TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGA-TGATGAGCT
* * * *
74557385 TTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGAT-TTACAGAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGAT-GAGCT
* * * * * * * *
74557429 CTTAACCCCTTAAGTAGTTGAGAAATAGATCGAAGATGATGGGCC
1 -TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCT
* *
74557474 TTAAACCCCTAAGTAGTAGGGTAACAG
1 TTAACCCCCTAAGCAGTAGGGTAACAG
74557501 GCTGGAAATT
Statistics
Matches: 626, Mismatches: 179, Indels: 101
0.69 0.20 0.11
Matches are distributed among these distances:
41 29 0.05
42 93 0.15
43 123 0.20
44 223 0.36
45 150 0.24
46 7 0.01
47 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (44 bp):
TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCT
Found at i:74557635 original size:68 final size:67
Alignment explanation
Indices: 74557518--74557715 Score: 292
Period size: 68 Copynumber: 2.9 Consensus size: 67
74557508 ATTACAAATT
* *
74557518 TCTTTT-TCCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA-A
1 TCTTTTCTTCCTGAAATGGCATTAGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCACA
74557581 AGGA
66 A--A
* *
74557585 TCTTTTCTTCCTGAAATGGCTTTAGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGC
1 TCTTTTCTTCCTGAAATGGCATTAGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA-C
74557650 AAA
65 AAA
* * *
74557653 CCTCTTCTTCCAGAAATGGCATTAGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 TCTTTTCTTCCTGAAATGGCATTAGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
74557716 GTGGAAGAAG
Statistics
Matches: 119, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
67 6 0.05
68 111 0.93
70 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (67 bp):
TCTTTTCTTCCTGAAATGGCATTAGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCACA
AA
Found at i:74557876 original size:44 final size:43
Alignment explanation
Indices: 74557828--74558242 Score: 275
Period size: 44 Copynumber: 9.4 Consensus size: 43
74557818 GATTTCAGCA
*
74557828 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAAC-AGTTGAAAATATCAGATT
* * * * * *
74557872 TGGCATCCCTGTACTTATAGGGAACGGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAG-TTGAAAATATCAGATT
* * * * * * * *
74557916 TGACATTCTTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAGTTGAAA-ATATCAG-ATT
*
74557960 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAAC-AGTTGAAAATATCAGATT
* * * * *
74558004 TGGCATCCCTGTGCTTATAGGGAACGGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAG-TTGAAAATATCAGATT
* * * * * * * *
74558048 TGACATTCTTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAGTTGAAA-ATATCAG-ATT
*
74558092 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAAC-AGTTGAAAATATCAGATT
* * * * *
74558136 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAAC-AGTTGAAAATATCAGATT
* * * * * * *
74558180 TGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAGTTGAAA-ATATCAG-ATT
74558224 TGGCATCCCTGTGCTTATA
1 TGGCATCCCTGTGCTTATA
74558243 TGAGCATTTG
Statistics
Matches: 278, Mismatches: 76, Indels: 34
0.72 0.20 0.09
Matches are distributed among these distances:
42 2 0.01
43 14 0.05
44 239 0.86
45 20 0.07
46 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
TGGCATCCCTGTGCTTATAGGGAACAGTTGAAAATATCAGATT
Found at i:74557968 original size:88 final size:87
Alignment explanation
Indices: 74557831--74558242 Score: 332
Period size: 88 Copynumber: 4.7 Consensus size: 87
74557821 TTCAGCATGG
* * * * *
74557831 CATCCCTGTGCTTATAGGGAACAAGTTGAAA-ACATCAGATTTGGCATCCCTGTACTTATAGGGA
1 CATCCCTGTGCTTACAGGGAAC-AGATCAAAGATATCAGA-TTGGCATCCCTGTGCTTATAGGGA
**
74557895 ACGGATCGAAGATAGCAGATCTGA
64 ACAAATCGAAGATAGCAGATCTGA
* * * *
74557919 CATTCTTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCA-TGGCATCCCTGTGCTTATAGGGA
1 CATCCCTGTGCTTACAGGGAA-CAGATCAAAGATATCAG-ATTGGCATCCCTGTGCTTATAGGGA
* * * * * * *
74557983 ACAAGTTGAAAACATCAGATTTGG
64 ACAAATCGAAGATAGCAGATCTGA
* * * * * * * * *
74558007 CATCCCTGTGCTTATAGGGAACGGATCGAAGATAGCAGATCTGACATTCTTGTGCTTACAGTGAA
1 CATCCCTGTGCTTACAGGGAACAGATCAAAGATATCAGAT-TGGCATCCCTGTGCTTATAGGGAA
* * ** *
74558072 GCAGATCAAAGATTTCAG--CATGG
65 -CAAATCGAAGATAGCAGATC-TGA
* * * *
74558095 CATCCCTGTGCTTATAGGGAACAAGTTGAAA-ACATCAGATTTGGCATCCCTGTGCTTATAGGGA
1 CATCCCTGTGCTTACAGGGAAC-AGATCAAAGATATCAGA-TTGGCATCCCTGTGCTTATAGGGA
74558159 ACAAATCGAAGATAGCAGATCTGA
64 ACAAATCGAAGATAGCAGATCTGA
* * *
74558183 CATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCA-TGGCATCCCTGTGCTTATA
1 CATCCCTGTGCTTACAGGGAA-CAGATCAAAGATATCAG-ATTGGCATCCCTGTGCTTATA
74558243 TGAGCATTTG
Statistics
Matches: 248, Mismatches: 62, Indels: 28
0.73 0.18 0.08
Matches are distributed among these distances:
86 1 0.00
87 26 0.10
88 191 0.77
89 28 0.11
90 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (87 bp):
CATCCCTGTGCTTACAGGGAACAGATCAAAGATATCAGATTGGCATCCCTGTGCTTATAGGGAAC
AAATCGAAGATAGCAGATCTGA
Found at i:74558006 original size:132 final size:132
Alignment explanation
Indices: 74557769--74558242 Score: 894
Period size: 132 Copynumber: 3.6 Consensus size: 132
74557759 AGGAGCAGAC
*
74557769 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCCAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
74557834 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTACTTATAGGGAACGG
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGG
74557899 AT
131 AT
*
74557901 CGAAGATAGCAGATCTGACATTCTTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
74557966 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGG
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGG
74558031 AT
131 AT
*
74558033 CGAAGATAGCAGATCTGACATTCTTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
**
74558098 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGG
74558163 AT
131 AT
74558165 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
74558230 CCCTGTGCTTATA
66 CCCTGTGCTTATA
74558243 TGAGCATTTG
Statistics
Matches: 336, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 336 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (132 bp):
CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGG
AT
Found at i:74558567 original size:86 final size:87
Alignment explanation
Indices: 74558417--74559056 Score: 359
Period size: 88 Copynumber: 7.3 Consensus size: 87
74558407 ATTCACAAGC
* * * *
74558417 CTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGTAGTAG
1 CTTAAACCCCTAAGC-ATAGGGTAACAGACCGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
74558482 GGAAACAGATCGAAGACGAAGGG
65 GGAAACAGATCGAAGACGAAGGG
* * *
74558505 TCTTAAACCCCTAATCGATAGGGTAACAGACCG-A-A-TTACAGATCTTATCTCCCTAAGCAGTA
1 -CTTAAACCCCTAAGC-ATAGGGTAACAGACCGAAGATTTACAGATCTTAACCCCCTAAGCAGTA
* *
74558567 GGGAAACAGATCGAAGATGATGGG
64 GGGAAACAGATCGAAGACGAAGGG
* * * *
74558591 CTTTAACCCTCTAAGCAGTAGGGTAACA-AGCC-AA-ATTTACA-AGCCTTAA-CCCCTAAGTAA
1 CTTAAACCC-CTAAGCA-TAGGGTAACAGA-CCGAAGATTTACAGA-TCTTAACCCCCTAAGCAG
* * ** **
74558651 TAGGGTAACAG-GCTGAAGATTTACAGAT
62 TAGGGAAACAGATC-GAAGA-CGA-AGGG
* * *** * * **
74558679 CTTAACCCCCTAAGCAGTAGGGAAACAGATTAAAGA-TGA-TGGGCTTTAA-CCCCTAAGCAGTA
1 CTTAAACCCCTAAGCA-TAGGGTAACAGACCGAAGATTTACAGATC-TTAACCCCCTAAGCAGTA
* * * *
74558741 GGGTAACA-AGCCGAATTTAC-AA-GC
64 GGGAAACAGA-TCGAA--GACGAAGGG
* * *
74558765 CTTAAACCCCTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCA-TAGGGTAACAGACCGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* *
74558830 GGAAACAGATCGAAGATGATGGG
65 GGAAACAGATCGAAGACGAAGGG
* * * *
74558853 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCG-A-ATTTACAAACCTTAAACCCCTAAGCAGT
1 C-TTAAACCCCTAAGCA-TAGGGTAACAGA-CCGAAGATTTACAGATCTTAACCCCCTAAGCAGT
* * ** ***
74558915 AGGGTAACAG-GCTGAAGATTTACAAAT
63 AGGGAAACAGATC-GAAGA-CGA-AGGG
* * *** ** *
74558942 CTTAACCCCCTAACCAGTAGGGTAACAGGTTG-A-ATTTACAGATCTTAACCCTTTAAGCAGTTG
1 CTTAAACCCCTAAGCA-TAGGGTAACAGACCGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* * * *
74559005 GGAAATAGATCGAATATGATGGG
65 GGAAACAGATCGAAGACGAAGGG
*
74559028 CCTTAAACCCCTAAGTAGTAGGGTAACAG
1 -CTTAAACCCCTAAGCA-TAGGGTAACAG
74559057 GCTGGAAATT
Statistics
Matches: 428, Mismatches: 91, Indels: 66
0.73 0.16 0.11
Matches are distributed among these distances:
85 11 0.03
86 121 0.28
87 104 0.24
88 133 0.31
89 58 0.14
90 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (87 bp):
CTTAAACCCCTAAGCATAGGGTAACAGACCGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGG
GAAACAGATCGAAGACGAAGGG
Found at i:74558742 original size:43 final size:44
Alignment explanation
Indices: 74558463--74558880 Score: 209
Period size: 44 Copynumber: 9.6 Consensus size: 44
74558453 TTTACAGATC
* * * * *
74558463 TTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGACGAAGGG-T
1 TTAACCCCCTAAGCAGTAGGGTAACAGACCGAAGATGATGGGCT
* * * *
74558506 CTTAAACCCCTAATC-GATAGGGTAACAGACCGAATTACAGAT---C-
1 -TTAACCCCCTAAGCAG-TAGGGTAACAGACCGAA-GA-TGATGGGCT
* * * *
74558549 TTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCT
1 TTAACCCCCTAAGCAGTAGGGTAACAGACCGAAGATGATGGGCT
* * *** *
74558593 TTAACCCTCTAAGCAGTAGGGTAACA-AGCC-AA-ATTTACAAGCC
1 TTAACCCCCTAAGCAGTAGGGTAACAGA-CCGAAGA-TGATGGGCT
* * * * * ** *
74558636 TTAA-CCCCTAAGTAATAGGGTAACAGGCTGAAGAT-TTACAGAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGACCGAAGATGAT-GGGCT
* ***
74558679 CTTAACCCCCTAAGCAGTAGGGAAACAGATTAAAGATGATGGGCT
1 -TTAACCCCCTAAGCAGTAGGGTAACAGACCGAAGATGATGGGCT
* * *** *
74558724 TTAA-CCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAAGCC
1 TTAACCCCCTAAGCAGTAGGGTAACAGA-CCGAAGATGATGGGCT
* * * * * ** *
74558766 TTAAACCCCTAAGCAGTAGGGTAACTGGCTGAAGAT-TTACAGAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGACCGAAGATGAT-GGGCT
* *
74558810 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCT
1 -TTAACCCCCTAAGCAGTAGGGTAACAGACCGAAGATGATGGGCT
74558855 TTAACCCCCTAAGCAGTAGGGTAACA
1 TTAACCCCCTAAGCAGTAGGGTAACA
74558881 AGCCGAATTT
Statistics
Matches: 273, Mismatches: 76, Indels: 50
0.68 0.19 0.13
Matches are distributed among these distances:
40 3 0.01
41 1 0.00
42 54 0.20
43 65 0.24
44 86 0.32
45 60 0.22
46 4 0.01
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (44 bp):
TTAACCCCCTAAGCAGTAGGGTAACAGACCGAAGATGATGGGCT
Found at i:74558862 original size:175 final size:172
Alignment explanation
Indices: 74558405--74559056 Score: 510
Period size: 175 Copynumber: 3.8 Consensus size: 172
74558395 TAGAATCAGT
* * *
74558405 GAATTCACAAGCCTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAA-ATTTACAGATCTTAACCC
* * * *
74558470 CCTAAGTAGTAGGGAAACAGATCGAAGACGAAGGG-TCTTAAACCCCTAATC-GATAGGGTAACA
65 CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTCTTAAACCCCTAAGCAG-TAGGGTAACA
* * * *
74558533 GACCGAATTACA-GATC-TTATCTCCCTAAGCAGTAGGGAAAC-AGATC
129 GACCCAA--A-ATGATCTTTAAC-CCCTAAGCAGTAGGGTAACAAG-CC
* * ** * * * * *
74558579 GAAGATGA-TGGGCTTTAACCCTCTAAGCAGTAGGGTAACAAGC-CAAATTTACA-AGCCTTAA-
1 GAA-TTTACAAGCCTTAAACCC-CTAAGCAGTAGGGTAACAGGCTGAAATTTACAGA-TCTTAAC
* * * * * ** * * *
74558640 CCCCTAAGTAATAGGGTAACAG-GCTGAAGAT-TTACAGATCTTAACCCCCTAAGCAGTAGGGAA
63 CCCCTAAGCAGTAGGGAAACAGATC-GAAGATGAT-GGGCTCTTAAACCCCTAAGCAGTAGGGTA
**
74558703 ACAGA-TTAAAGATGATGGGCTTTAACCCCTAAGCAGTAGGGTAACAAGCC
126 ACAGACCCAAA-ATGAT---CTTTAACCCCTAAGCAGTAGGGTAACAAGCC
*
74558753 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGATCTTAACCC
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAA-ATTTACAGATCTTAACCC
*
74558818 CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCT-TTAACCCCCTAAGCAGTAGGGTAACA-
65 CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTCTTAAACCCCTAAGCAGTAGGGTAACAG
* * * * * *
74558881 AGCCGAATTTACA-AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCT
130 A-CCCAA---A-ATGATCTTTAACCCCTAAGCAGTAGGGTAACAAGCC
** * * *
74558928 GAAGATTTACAAATCTTAACCCCCTAACCAGTAGGGTAACAGGTTG-AATTTACAGATCTTAACC
1 G-A-ATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTTACAGATCTTAACC
** * * * *
74558992 CTTTAAGCAGTTGGGAAATAGATCGAATATGATGGGC-CTTAAACCCCTAAGTAGTAGGGTAACA
64 CCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTCTTAAACCCCTAAGCAGTAGGGTAACA
74559056 G
129 G
74559057 GCTGGAAATT
Statistics
Matches: 381, Mismatches: 68, Indels: 56
0.75 0.13 0.11
Matches are distributed among these distances:
170 2 0.01
171 4 0.01
172 29 0.08
173 58 0.15
174 49 0.13
175 166 0.44
176 32 0.08
177 38 0.10
178 1 0.00
179 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (172 bp):
GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTTACAGATCTTAACCCC
CTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTCTTAAACCCCTAAGCAGTAGGGTAACAGA
CCCAAAATGATCTTTAACCCCTAAGCAGTAGGGTAACAAGCC
Found at i:74558930 original size:132 final size:132
Alignment explanation
Indices: 74558506--74558969 Score: 733
Period size: 131 Copynumber: 3.6 Consensus size: 132
74558496 GACGAAGGGT
* * * * *
74558506 CTTAAACCCCTAATC-GATAGGGTAACAGACCG-A-A-TTACAGATCTTATCTCCCTAAGCAGTA
1 CTTAAACCCCTAAGCAG-TAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTA
* *
74558567 GGGAAACAGATCGAAGATGATGGGCTTTAACCCTCTAAGCAGTAGGGTAACAAGCCAAATTTACA
65 GGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
74558632 AGC
130 AGC
* *
74558635 CTT-AACCCCTAAGTAATAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
**
74558699 GGAAACAGATTAAAGATGATGGGCTTTAA-CCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
66 GGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
74558763 GC
131 GC
*
74558765 CTTAAACCCCTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
74558830 GGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
66 GGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
*
74558895 AC
131 GC
* *
74558897 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
*
74558962 GGTAACAG
66 GGAAACAG
74558970 GTTGAATTTA
Statistics
Matches: 308, Mismatches: 21, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
128 22 0.07
129 4 0.01
130 39 0.13
131 138 0.45
132 105 0.34
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (132 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
GGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
GC
Found at i:74558980 original size:43 final size:43
Alignment explanation
Indices: 74558417--74559002 Score: 345
Period size: 43 Copynumber: 13.4 Consensus size: 43
74558407 ATTCACAAGC
* *
74558417 CTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGAT
* * * * *
74558462 CTTAACCCCCTAAGTAGTAGGGAAACA-GATCGAA--GACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAATTTAC--A-GAT
* * * *
74558506 CTTAAACCCCTAATC-GATAGGGTAACAGACCGAA-TTACAGAT
1 CTTAACCCCCTAAGCAG-TAGGGTAACAGGCTGAATTTACAGAT
* * * * * * * **
74558548 CTTATCTCCCTAAGCAGTAGGGAAACA-GATCGAAGATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAA-TTTACAGAT
* * ** *
74558591 CTTTAACCCTCTAAGCAGTAGGGTAACAAGCCAAATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA-T
* *
74558635 CTTAA-CCCCTAAGTAATAGGGTAACAGGCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGAT
* ** * * * * **
74558679 CTTAACCCCCTAAGCAGTAGGGAAACAGATTAAAGATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAA-TTTACAGAT
* * *
74558722 CTTTAA-CCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA-T
* *
74558765 CTTAAACCCCTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGAT
* * * * * **
74558810 CTTAACCCCCTAAGCAGTAGGGAAACA-GATCGAAGATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAA-TTTACAGAT
* * * *
74558853 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
* *
74558897 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGAT
* *
74558942 CTTAACCCCCTAACCAGTAGGGTAACAGGTTGAATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
**
74558985 CTTAACCCTTTAAGCAGT
1 CTTAACCCCCTAAGCAGT
74559003 TGGGAAATAG
Statistics
Matches: 405, Mismatches: 102, Indels: 70
0.70 0.18 0.12
Matches are distributed among these distances:
41 2 0.00
42 51 0.13
43 120 0.30
44 112 0.28
45 119 0.29
46 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
Found at i:74559191 original size:68 final size:67
Alignment explanation
Indices: 74559074--74559272 Score: 267
Period size: 68 Copynumber: 2.9 Consensus size: 67
74559064 ATTACAAATT
* * *
74559074 TCTTTT-TCCCTGAAATGGCATTGGAGTGGCTAAAAGCCACAGCAGATCTCCTTAAAGTTTCAG-
1 TCTTTTCTTCCTGAAATGGCATTGGA-AGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
*
74559137 AGGA
65 A-AA
* *
74559141 TCTTTTCTTCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGC
1 TCTTTTCTTCCTGAAATGGCATTGGAA-GGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
74559206 AAA
65 AAA
* * *
74559209 CCTCTTCTTCCAGAAATGGCATTGGAGAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
1 TCTTTTCTTCCTGAAATGGCATTGGA-AGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
74559273 TGGAAGAAGA
Statistics
Matches: 117, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
67 6 0.05
68 109 0.93
69 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (67 bp):
TCTTTTCTTCCTGAAATGGCATTGGAAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCA
AA
Found at i:74559562 original size:132 final size:132
Alignment explanation
Indices: 74559325--74560036 Score: 1280
Period size: 132 Copynumber: 5.4 Consensus size: 132
74559315 AGGAGCAGAC
*
74559325 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGACAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCAT
*
74559390 CCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
74559455 AT
131 AT
*
74559457 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTAAAGCAGATCGAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCAT
74559522 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
74559587 AT
131 AT
*
74559589 AGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCAT
74559654 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
74559719 AT
131 AT
*
74559721 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCTTGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCAT
74559786 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
74559851 AT
131 AT
*
74559853 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCAT
*
74559918 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
*
74559983 GT
131 AT
* * * * * * * *
74559985 TGAAAACAACAAATTTGACTTTCCTGTGCTTACAGTGAAGCAGATCAAAGAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGAT
74560037 AGCGGATATC
Statistics
Matches: 562, Mismatches: 18, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 562 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (132 bp):
CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCAT
CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
AT
Found at i:74560016 original size:44 final size:44
Alignment explanation
Indices: 74559387--74559990 Score: 519
Period size: 44 Copynumber: 13.7 Consensus size: 44
74559377 TTCAGCATGA
* *
74559387 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGG
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGG
* * * * *
74559431 CATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGA
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGG
* * ** * * **
74559475 CATTCCTGTGCTTACAGTAAAGC-AGATCGAAGATTTCAGCA--TGG
1 CATCCCTGTGCTTATAGGGAA-CAAG-TTGAAAATAGCAG-ATTTGG
*
74559519 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGG
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGG
* * * * *
74559563 CATCCCTGTGCTTATAGGGAACAAATAGAAGATAGCAGATCTGA
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGG
* * * * * **
74559607 CATTCCTGTGCTTACAGTGAAGC-AGATCGAAGATTTCAGCA--TGG
1 CATCCCTGTGCTTATAGGGAA-CAAG-TTGAAAATAGCAG-ATTTGG
*
74559651 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGG
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGG
* * * * *
74559695 CATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGA
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGG
* * * * * ** *
74559739 CATTCCTGTGCTTACAGTGAAGC-AGATCGAAGATTTCAG-CTTGG
1 CATCCCTGTGCTTATAGGGAA-CAAG-TTGAAAATAGCAGATTTGG
*
74559783 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGG
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGG
* * * * *
74559827 CATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGA
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGG
* * * * * **
74559871 CATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--TGG
1 CATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATAGCAG-ATTTGG
* *
74559915 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGG
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGG
74559959 CATCCCTGTGCTTATAGGGAACAAGTTGAAAA
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAA
74559991 CAACAAATTT
Statistics
Matches: 444, Mismatches: 94, Indels: 44
0.76 0.16 0.08
Matches are distributed among these distances:
42 3 0.01
43 33 0.07
44 364 0.82
45 41 0.09
46 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (44 bp):
CATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGG
Found at i:74560545 original size:20 final size:23
Alignment explanation
Indices: 74560499--74560545 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
74560489 GTTTTTGGTT
* *
74560499 TTTTGGAGGAGGATTGTTCTTTG
1 TTTTAGAGGAGGATTGTTCTTTA
74560522 TTTTAGAGGAGG-TT-TT-TTTA
1 TTTTAGAGGAGGATTGTTCTTTA
74560542 TTTT
1 TTTT
74560546 TTGGAGGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 7 0.32
21 2 0.09
22 2 0.09
23 11 0.50
ACGTcount: A:0.15, C:0.02, G:0.28, T:0.55
Consensus pattern (23 bp):
TTTTAGAGGAGGATTGTTCTTTA
Found at i:74560566 original size:19 final size:19
Alignment explanation
Indices: 74560529--74560566 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
74560519 TTGTTTTAGA
*
74560529 GGAGGTTTTTTTATTTTTT
1 GGAGGTTTTTTTATGTTTT
74560548 GGAGGTGTTTTTT-TGTTTT
1 GGAGGT-TTTTTTATGTTTT
74560567 TTTGGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.08, C:0.00, G:0.26, T:0.66
Consensus pattern (19 bp):
GGAGGTTTTTTTATGTTTT
Found at i:74560783 original size:3 final size:3
Alignment explanation
Indices: 74560769--74560854 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
74560759 GAGCTTTGTT
* *
74560769 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
74560813 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
74560855 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 7 0.10
3 52 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:74560807 original size:27 final size:27
Alignment explanation
Indices: 74560768--74560854 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
74560758 AGAGCTTTGT
74560768 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
74560795 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
74560820 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
74560846 -TTATATTAT
1 TTTATATTAT
74560855 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 9 0.19
27 13 0.27
28 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:74560829 original size:21 final size:18
Alignment explanation
Indices: 74560769--74560858 Score: 92
Period size: 18 Copynumber: 4.7 Consensus size: 18
74560759 GAGCTTTGTT
*
74560769 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
74560789 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
74560807 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
74560828 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
74560846 TTA-TATTATATAT
1 TTATTATT-TATAT
74560859 GCCCTCTCTA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.43
19 9 0.15
20 10 0.16
21 12 0.20
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:74563112 original size:3 final size:3
Alignment explanation
Indices: 74563099--74563184 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
74563089 GAGGGCATAT
**
74563099 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GGA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA
* *
74563146 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
74563185 AACAAAGCTC
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
2 8 0.12
3 48 0.73
4 9 0.14
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:74563123 original size:12 final size:12
Alignment explanation
Indices: 74563099--74563181 Score: 71
Period size: 12 Copynumber: 6.8 Consensus size: 12
74563089 GAGGGCATAT
74563099 ATAATAT-AATA
1 ATAATATAAATA
74563110 ATAATATAAATA
1 ATAATATAAATA
74563122 ATAATATATACATGA
1 ATAATATA-A-AT-A
**
74563137 GGAATA-ATAATA
1 ATAATATA-AATA
74563149 ATAATATAAATA
1 ATAATATAAATA
* *
74563161 ATAGTAAAAATA
1 ATAATATAAATA
*
74563173 ATAAAATAA
1 ATAATATAA
74563182 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
11 7 0.12
12 37 0.64
13 4 0.07
14 5 0.09
15 5 0.09
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:74563172 original size:27 final size:27
Alignment explanation
Indices: 74563099--74563185 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
74563089 GAGGGCATAT
* *
74563099 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* * * *
74563125 AT-ATATACAT--GAGGAATAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
74563149 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
74563176 A-AATAATAAA
1 ATAAT-ATAAA
74563186 ACAAAGCTCT
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
24 11 0.24
25 11 0.24
26 7 0.15
27 17 0.37
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:74563526 original size:25 final size:25
Alignment explanation
Indices: 74563479--74563526 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
74563469 AAAAACTAGC
*
74563479 CTTTCCAAGAAACAAAAATAACCTT
1 CTTTCCAAAAAACAAAAATAACCTT
74563504 CTTTCCAGAAAAACAAAAA-AACC
1 CTTTCCA-AAAAACAAAAATAACC
74563527 CTCCAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.52, C:0.25, G:0.04, T:0.19
Consensus pattern (25 bp):
CTTTCCAAAAAACAAAAATAACCTT
Found at i:74563570 original size:23 final size:19
Alignment explanation
Indices: 74563512--74563578 Score: 73
Period size: 19 Copynumber: 3.3 Consensus size: 19
74563502 TTCTTTCCAG
*
74563512 AAAAACAAAAAAAC-CCTCC
1 AAAAA-AAAAAACCTCCTCC
74563531 AAAAAAAAAAACCTCCTCC
1 AAAAAAAAAAACCTCCTCC
74563550 AAAACAAAGAACAATCCTCCTCC
1 AAAA-AAA-AA-AA-CCTCCTCC
74563573 AAAAAA
1 AAAAAA
74563579 CCAAAAACCC
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
18 7 0.17
19 14 0.33
20 3 0.07
21 2 0.05
22 4 0.10
23 12 0.29
ACGTcount: A:0.60, C:0.30, G:0.01, T:0.09
Consensus pattern (19 bp):
AAAAAAAAAAACCTCCTCC
Found at i:74563714 original size:4 final size:4
Alignment explanation
Indices: 74563705--74563731 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
74563695 GGCCAAGGTT
74563705 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
74563732 TTTCTGTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:74564131 original size:44 final size:44
Alignment explanation
Indices: 74564071--74564439 Score: 199
Period size: 44 Copynumber: 8.4 Consensus size: 44
74564061 TTTCAACTTG
* * *
74564071 TTCCCTATAAGTACAGGGATGTCATGCTGAAGTCTTCGATCTAC
1 TTCCCTATAAGCACAGGGATGCCATGCTGAAGTCTTCGATCTTC
* * * * *
74564115 TTCACTGTAAGCACAGGAATGTCA-GATCTGCTA-TCTTCGATC--C
1 TTCCCTATAAGCACAGGGATGCCATG--CTG-AAGTCTTCGATCTTC
* * * *
74564158 GTTCCCTATAAGCACAGGGATGCCAAAT-CT-ATTGTTTTC-AACTTG
1 -TTCCCTATAAGCACAGGGATGCC--ATGCTGA-AGTCTTCGATCTTC
* * * *
74564203 TTCCCTATAAGCACAGGGATGCCAAAT-CTGATGTTTTC-AACTTG
1 TTCCCTATAAGCACAGGGATGCC--ATGCTGAAGTCTTCGATCTTC
* * * *
74564247 TTCCCTATAAGCACAGGGATGCCATGATGAAATCTTTGATCTGC
1 TTCCCTATAAGCACAGGGATGCCATGCTGAAGTCTTCGATCTTC
* * * * * *
74564291 TTCACTGTAAGCACAGGAATGTCA-GATCTGCTA-TCTTCGAT-TTG
1 TTCCCTATAAGCACAGGGATGCCATG--CTG-AAGTCTTCGATCTTC
* * * *
74564335 TTCCCTATAAGCACAGGGATGCCAAAT-CTGATGTTTTC-AACTTG
1 TTCCCTATAAGCACAGGGATGCC--ATGCTGAAGTCTTCGATCTTC
* * *
74564379 TTCCCTATAAGCACAGGGATGCCATGCTAAAATCTTCGATCTGC
1 TTCCCTATAAGCACAGGGATGCCATGCTGAAGTCTTCGATCTTC
* *
74564423 TTCACTGTAAGCACAGG
1 TTCCCTATAAGCACAGG
74564440 AATGTCAGAT
Statistics
Matches: 253, Mismatches: 48, Indels: 48
0.72 0.14 0.14
Matches are distributed among these distances:
42 4 0.02
43 19 0.08
44 204 0.81
45 22 0.09
46 4 0.02
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
TTCCCTATAAGCACAGGGATGCCATGCTGAAGTCTTCGATCTTC
Found at i:74564169 original size:88 final size:88
Alignment explanation
Indices: 74564015--74564358 Score: 383
Period size: 88 Copynumber: 3.9 Consensus size: 88
74564005 ATATCCGCTA
* * * *
74564015 TCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATTTGCTGTTTTCAACTTGTTCCCTATA
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATA
* *
74564080 AGTACAGGGATGTCATGCTGAAG
66 AGCACAGGGATGCCATGCTGAAG
* * *
74564103 TCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCGTTCCCTAT
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACT-TGTTCCCTAT
*
74564167 AAGCACAGGGATGCCAAAT-CT-ATTG
65 AAGCACAGGGATGCC--ATGCTGA-AG
* * * * * * * * * *
74564192 TTTTC-AACTTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTAT
1 TCTTCGATC-TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTAT
* *
74564255 AAGCACAGGGATGCCATGATGAAA
65 AAGCACAGGGATGCCATGCTGAAG
* * *
74564279 TCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATA
74564344 AGCACAGGGATGCCA
66 AGCACAGGGATGCCA
74564359 AATCTGATGT
Statistics
Matches: 207, Mismatches: 39, Indels: 20
0.78 0.15 0.08
Matches are distributed among these distances:
86 2 0.01
87 7 0.03
88 187 0.90
89 9 0.04
90 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (88 bp):
TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATA
AGCACAGGGATGCCATGCTGAAG
Found at i:74564302 original size:132 final size:132
Alignment explanation
Indices: 74564014--74564454 Score: 548
Period size: 132 Copynumber: 3.3 Consensus size: 132
74564004 GATATCCGCT
* *
74564014 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATTTGCTGTTTTCAACTTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTGTTTTCAACTTGTTCCCTAT
* * * * * ** * * * *
74564079 AAGTACAGGGATGTC--ATGCTGAAGTCTTCGATCTACTTCACTGTAAGCACAGGAATGTCA-GA
66 AAGCACAGGGATGCCAAAT-CTGATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCATGA
**
74564141 TCTGCT
129 --TGAA
* * * * * * **
74564147 ATCTTCGATCCG-TTCCCTATAAGCACAGGGATGCCAAATCTATTGTTTTCAACTTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTGTTTTCAACTTGTTCCCTAT
74564211 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGATG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGATG
74564276 AA
131 AA
* * * * *
74564278 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTGTTTTCAACTTGTTCCCTAT
* *
74564343 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTA
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGATG
74564408 AA
131 AA
74564410 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCT
74564455 ATCTTCGGTC
Statistics
Matches: 265, Mismatches: 39, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
131 12 0.05
132 230 0.87
133 21 0.08
134 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (132 bp):
ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTGTTTTCAACTTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGATG
AA
Found at i:74564328 original size:176 final size:176
Alignment explanation
Indices: 74564034--74564402 Score: 605
Period size: 176 Copynumber: 2.1 Consensus size: 176
74564024 TGCTTCACTG
* * * * * * * *
74564034 TAAGCACAGGAATGTCAGATTTGCTGTTTTCAACTTGTTCCCTATAAGTACAGGGATGTCATGCT
1 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGAT
*
74564099 GAAGTCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCGTTCCC
66 GAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCGTTCCC
74564164 TATAAGCACAGGGATGCCAAATCT-ATTGTTTTCAACTTGTTCCCTA
131 TATAAGCACAGGGATGCCAAATCTGA-TGTTTTCAACTTGTTCCCTA
74564210 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGAT
1 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGAT
* * **
74564275 GAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCC
66 GAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCGTTCCC
74564340 TATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTA
131 TATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTA
74564386 TAAGCACAGGGATGCCA
1 TAAGCACAGGGATGCCA
74564403 TGCTAAAATC
Statistics
Matches: 179, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
176 178 0.99
177 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (176 bp):
TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGAT
GAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCGTTCCC
TATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTA
Found at i:74564390 original size:88 final size:87
Alignment explanation
Indices: 74564027--74564395 Score: 352
Period size: 88 Copynumber: 4.2 Consensus size: 87
74564017 TTTGATCTGC
* * * * *
74564027 TTCACTGTAAGCACAGGAATGTCAGATTTGCTGTTTTCAACTTGTTCCCTATAAGTACAGGGATG
1 TTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATG
* * * **
74564092 TCATGCTGAAGTCTTCGATCTAC
66 CCATGCTGAAGTTTTC-AACTTG
* * *
74564115 TTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCGTTCCCTATAAGCACAGGGAT
1 TTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCAACT-TGTTCCCTATAAGCACAGGGAT
*
74564179 GCCAAAT-CT-ATTGTTTTCAACTTG
65 GCC--ATGCTGA-AGTTTTCAACTTG
* * * * * * *
74564203 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
1 TTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATG
* * * *
74564268 CCATGATGAAATCTTTGATC-TG
66 CCATGCTGAAGT-TTTCAACTTG
* * *
74564290 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGAT
1 -TTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGAT
*
74564355 GCCAAAT-CTGATGTTTTCAACTTG
65 GCC--ATGCTGAAGTTTTCAACTTG
*
74564379 TTCCCTATAAGCACAGG
1 TTCACTATAAGCACAGG
74564396 GATGCCATGC
Statistics
Matches: 225, Mismatches: 44, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
86 2 0.01
87 5 0.02
88 200 0.89
89 14 0.06
90 4 0.02
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (87 bp):
TTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATG
CCATGCTGAAGTTTTCAACTTG
Found at i:74564434 original size:88 final size:87
Alignment explanation
Indices: 74564146--74564439 Score: 278
Period size: 88 Copynumber: 3.3 Consensus size: 87
74564136 TCAGATCTGC
*
74564146 TATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATCT-ATTGTTTTCAACTTGTTCCCTA
1 TATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGA-TGTTTTCAACTTGTTCCCTA
74564210 TAAGCACAGGGATGCCAAAT-CTGA
65 TAAGCACAGGGATGCC--ATGCTGA
* * * * ** * * *
74564234 TGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--ATGATGAAATCTTTGATC-TGCTTCA
1 TATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTTCAACTTG-TTCC
* * * *
74564295 CTGTAAGCACAGGAATGTCA-GATCTGC
62 CTATAAGCACAGGGATGCCATG--CTGA
*
74564322 TATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTAT
1 TATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTAT
*
74564387 AAGCACAGGGATGCCATGCTAA
66 AAGCACAGGGATGCCATGCTGA
* * *
74564409 AATCTTCGATCTGCTTCACTGTAAGCACAGG
1 TATCTTCGATCTG-TTCCCTATAAGCACAGG
74564440 AATGTCAGAT
Statistics
Matches: 159, Mismatches: 33, Indels: 28
0.72 0.15 0.13
Matches are distributed among these distances:
86 3 0.02
87 19 0.12
88 127 0.80
89 8 0.05
90 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (87 bp):
TATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTAT
AAGCACAGGGATGCCATGCTGA
Found at i:74564602 original size:68 final size:69
Alignment explanation
Indices: 74564514--74564701 Score: 260
Period size: 68 Copynumber: 2.8 Consensus size: 69
74564504 TCTTCTTCCA
* *
74564514 CTGAAACTT-AAAGGAGATCTGCTTTGGCTTTTAGCCTCTCCAATGCCATTTCT-GGAAGAAGAG
1 CTGAAACTTCAAA-GAGATCTGCTTTGGCTTTTAGCCGCTCCAATGCCATTTCTAGGAAGAAAAG
* *
74564577 GT-TT
65 ATCCT
74564581 GCTGAAACTTCAAAGAGATCTG-TTGTGGCTTTTAGCCGCTCCAATGCCATTT-TAGGAAGAAAA
1 -CTGAAACTTCAAAGAGATCTGCTT-TGGCTTTTAGCCGCTCCAATGCCATTTCTAGGAAGAAAA
74564644 GATCCT
64 GATCCT
* *
74564650 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTC
1 CTGAAACTTCAAAGAGATCTGCTTTGGCTTTTAGCCGCTCCAATGCCATTTC
74564702 AGGGAAAAAG
Statistics
Matches: 108, Mismatches: 6, Indels: 11
0.86 0.05 0.09
Matches are distributed among these distances:
67 3 0.03
68 100 0.93
69 5 0.05
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (69 bp):
CTGAAACTTCAAAGAGATCTGCTTTGGCTTTTAGCCGCTCCAATGCCATTTCTAGGAAGAAAAGA
TCCT
Found at i:74564953 original size:132 final size:132
Alignment explanation
Indices: 74564817--74565112 Score: 484
Period size: 132 Copynumber: 2.2 Consensus size: 132
74564807 TAAATTCAAC
* * * * *
74564817 CTGTTACCCTACTGGTTAGGGGGTTAAGGTTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGG
* * **
74564882 GGTTTAAGGCTTGTAAATCCGGCTTGGTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTT
66 GGTTTAAAGCTTGTAAATCCGGCTTGGTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
74564947 AT
131 AT
74564949 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGG
* * *
74565014 GGTTTAAAGCTTGTAAATTCGGTTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
66 GGTTTAAAGCTTGTAAATCCGGCTTGGTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
74565079 AT
131 AT
74565081 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
74565113 TCATCTTCGA
Statistics
Matches: 152, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 152 1.00
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.35
Consensus pattern (132 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGG
GGTTTAAAGCTTGTAAATCCGGCTTGGTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
AT
Found at i:74565057 original size:88 final size:88
Alignment explanation
Indices: 74564784--74565063 Score: 266
Period size: 88 Copynumber: 3.2 Consensus size: 88
74564774 CTATTTCCCA
* * * * *
74564784 ACTGCTTAAGGGGTTAAGATCTGTAAA--TTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGGT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGC
**
74564847 TTGTAAATCTTCAGCCTGTTACCCT
66 TTGTAAA--TTCAGTTTGTTACCCT
* * * * *
74564872 ACTGCTTAGGGGTTTAAG-GCTTGTAAATC--CGGCTTGGTACCCTACTGCTTAGGGGGTTAAAG
1 ACTGCTTAGGGGGTTAAGATC-TGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAG
*** ** * * *
74564934 CCCATCATTTTTTA-TCTGTTTCCCT
65 CTTGT-A-AATTCAGTTTGTTACCCT
* *
74564959 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTAAAGC
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGC
*
74565024 TTGTAAATTCGGTTTGTTACCCT
66 TTGTAAATTCAGTTTGTTACCCT
74565047 ACTGCTTAGGGGGTTAA
1 ACTGCTTAGGGGGTTAA
74565064 AGCCCATCAT
Statistics
Matches: 149, Mismatches: 34, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
87 37 0.25
88 81 0.54
89 31 0.21
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.35
Consensus pattern (88 bp):
ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGC
TTGTAAATTCAGTTTGTTACCCT
Found at i:74565128 original size:175 final size:174
Alignment explanation
Indices: 74564730--74565281 Score: 525
Period size: 175 Copynumber: 3.2 Consensus size: 174
74564720 AATTTCCAGC
* * * * * *
74564730 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GACCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * * *
74564795 GGTTAAGATCTGTAAA--TTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGGTTTGTAAATCTT
65 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA-GGGGTTAAAGATTGTAAA--TT
* * * * *** * *
74564858 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATC--CG-G
127 CGGTCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGAT
* * * **
74564904 CTTGGTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTTATCTGTTTCCCTACTGCTTAGG
1 C-TGTTACCCTACTGCTTAGGGGGTT-AAGACCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
* *
74564969 GGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTAAAGCTTGTAAATTC
64 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGG-TTAAAGATTGTAAATTC
*
74565034 GGTTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
128 GGTCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
* * * * *
74565081 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTTCCTACTGCTTAGGTG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
* * * *
74565146 GTTAAGATCT-T-CATCTTC-GATCTGTTTA-CCTACTGCTTAGGGAGAT-AAGATCTG-CAATT
66 GTTAAGATCTGTAAATCTTCAG-CCTG-TTACCCTACTGCTTAGGG-GTTAAAGAT-TGTAAATT
* * * * *
74565205 CGGTCTGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTCTTCGAT
127 CGGTCTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATCTTCGAT
*
74565253 CTGTTTCCCTACTGCTTAGGGGGTTAAGA
1 CTGTTACCCTACTGCTTAGGGGGTTAAGA
74565282 TCTGTAAATC
Statistics
Matches: 319, Mismatches: 46, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
171 9 0.03
172 70 0.22
173 25 0.08
174 9 0.03
175 142 0.45
176 30 0.09
177 34 0.11
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (174 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGACCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAAGATTGTAAATTCGGT
CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
Found at i:74565281 original size:44 final size:43
Alignment explanation
Indices: 74564730--74565325 Score: 362
Period size: 43 Copynumber: 13.7 Consensus size: 43
74564720 AATTTCCAGC
* * * ** *
74564730 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAA-GATCTTCATCTTCGAT
* * * ** * *
74564774 CTATTTCCCAACTGCTTAAGGGGTTAAGATCTGT-AAATTCAAC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-TCATCTTCGAT
* * * * * *
74564817 CTGTTACCCTACTGGTTAGGGGGTTAAGGTTTGTAAATCTTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * * * ** * *
74564862 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAATCCG-G
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTT-CATCTTCGAT
* * ** * * **
74564904 CTTGGTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTTAT
1 C-TGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
* *
74564949 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * * * * ** *
74564994 CAGTTACCCTACTGCTTAGGGGTTTAA-AGCTTGTAAATTCGGT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTT-CATCTTCGAT
* * ** *
74565037 TTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
74565081 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* *
74565124 CTGTTTTCCTACTGCTTAGGTGGTTAAGATCTTCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * * *
74565167 CTGTTTACCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGGT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * * *
74565209 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGA-TCTTCATCTTCGAT
* *
74565253 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * *
74565298 CTGTTACCCTATTGCTTAGGGGCTTAAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAG
74565326 GCTTGTGAAT
Statistics
Matches: 423, Mismatches: 109, Indels: 39
0.74 0.19 0.07
Matches are distributed among these distances:
42 28 0.07
43 182 0.43
44 119 0.28
45 94 0.22
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (43 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
Found at i:74565495 original size:66 final size:66
Alignment explanation
Indices: 74565389--74565515 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
74565379 TCTATGCTTA
*
74565389 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
74565454 G
66 G
*
74565455 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
74565516 TATATGAATG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
G
Done.