Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 259 of 292
Found at i:74566688 original size:7 final size:8
Alignment explanation
Indices: 74566660--74566689 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
74566650 TTTAGAATTT
74566660 TTTTTCGTG
1 TTTTT-GTG
74566669 TTTTTGTG
1 TTTTTGTG
74566677 TTTTTGTG
1 TTTTTGTG
74566685 TTTTT
1 TTTTT
74566690 TTTTTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.00, C:0.03, G:0.20, T:0.77
Consensus pattern (8 bp):
TTTTTGTG
Found at i:74566715 original size:6 final size:6
Alignment explanation
Indices: 74566702--74566737 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
74566692 TTTTTTTTTT
*
74566702 TTTGCC TTTACC TTTGCC TTTGCC TTTGCC TTTGCC
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
74566738 ATATAACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.03, C:0.33, G:0.14, T:0.50
Consensus pattern (6 bp):
TTTGCC
Found at i:74567612 original size:22 final size:22
Alignment explanation
Indices: 74567572--74567613 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
74567562 TGGCCACCCA
*
74567572 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
74567594 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
74567614 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:74567754 original size:25 final size:25
Alignment explanation
Indices: 74567720--74567768 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
74567710 GTTTTGGAGG
*
74567720 AGGTT-TTTTTGTTTTTTTGGAAAGA
1 AGGTTATTTTTG-TTTCTTGGAAAGA
74567745 AGGTTATTTTTGTTTCTTGGAAAG
1 AGGTTATTTTTGTTTCTTGGAAAG
74567769 GCTAGTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.20, C:0.02, G:0.24, T:0.53
Consensus pattern (25 bp):
AGGTTATTTTTGTTTCTTGGAAAGA
Found at i:74568082 original size:3 final size:3
Alignment explanation
Indices: 74568068--74568153 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
74568058 GAGCTTTGTT
* *
74568068 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* *
74568112 TTCC TCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TT-A TTA T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
74568154 ATATGCCCTC
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
2 6 0.09
3 52 0.79
4 8 0.12
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:74568106 original size:27 final size:27
Alignment explanation
Indices: 74568067--74568153 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
74568057 AGAGCTTTGT
74568067 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
* * *
74568094 TTTATATTATTATTATTATT-C-CTCA
1 TTTATATTATTATTATTTTTACTATTA
* * *
74568119 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
74568145 -TTATATTAT
1 TTTATATTAT
74568154 ATATGCCCTC
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
24 11 0.24
25 11 0.24
26 10 0.22
27 14 0.30
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:74568409 original size:12 final size:12
Alignment explanation
Indices: 74568376--74568418 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
74568366 TATATTAGTG
* *
74568376 TATATTTTTATG
1 TATATTTATATA
*
74568388 TATATATATATA
1 TATATTTATATA
74568400 TATATTTATATA
1 TATATTTATATA
74568412 TAGTATT
1 TA-TATT
74568419 GTTTTTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
12 22 0.85
13 4 0.15
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (12 bp):
TATATTTATATA
Found at i:74568524 original size:2 final size:2
Alignment explanation
Indices: 74568512--74568545 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
74568502 GTATTTCTAT
* *
74568512 TA TA TA CA TA TA TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
74568546 GTATTATTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:74569523 original size:6 final size:6
Alignment explanation
Indices: 74569512--74569546 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
74569502 TTCTGGTCCT
74569512 TCCCAA TCCCAA TCCCAA TCCCAA TCCCAA TCCCA
1 TCCCAA TCCCAA TCCCAA TCCCAA TCCCAA TCCCA
74569547 TTCTCTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.17
Consensus pattern (6 bp):
TCCCAA
Found at i:74571146 original size:18 final size:19
Alignment explanation
Indices: 74571118--74571158 Score: 75
Period size: 18 Copynumber: 2.2 Consensus size: 19
74571108 ATTACTGTTA
74571118 AAAAATATTTTTAAGAAAT
1 AAAAATATTTTTAAGAAAT
74571137 AAAAAT-TTTTTAAGAAAT
1 AAAAATATTTTTAAGAAAT
74571155 AAAA
1 AAAA
74571159 TGTCCATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (19 bp):
AAAAATATTTTTAAGAAAT
Found at i:74571672 original size:66 final size:66
Alignment explanation
Indices: 74571589--74571721 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
74571579 GTGTTTTTCA
* * *
74571589 AAAGCACTTCTGAACAGTTAAAAATTTAAACTAAAAATAATTTGTGCTACTTTTAGAGCTAGAAG
1 AAAGCACTTCTAAACAGTTAAAAATTTAAACTAAAAATAATTTATACTACTTTTAGAGCTAGAAG
74571654 T
66 T
74571655 AAAGCACTTCTAAACAGTTAAAAATTTAAACTAAAAATAATTTATACTACTTTTAGAGCTAGAAG
1 AAAGCACTTCTAAACAGTTAAAAATTTAAACTAAAAATAATTTATACTACTTTTAGAGCTAGAAG
74571720 T
66 T
74571721 A
1 A
74571722 TTTTTTTTAA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (66 bp):
AAAGCACTTCTAAACAGTTAAAAATTTAAACTAAAAATAATTTATACTACTTTTAGAGCTAGAAG
T
Found at i:74573094 original size:39 final size:40
Alignment explanation
Indices: 74572931--74573095 Score: 96
Period size: 39 Copynumber: 4.1 Consensus size: 40
74572921 TAATAAGAAT
* *
74572931 AATATTAAAGTAAAGTAA-AC---AATAATACTATATATA
1 AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
* * * *
74572967 AATATATATATGTATA-TAATAGAAATACACACTACTATATAATAA
1 AATAT-TAAAT-TAAAGTAATACAAA-A-ACAATACTATAT-AT-A
* * * *
74573012 TAATAATAAA-TATAGAAATACAAAAAGCAA-A-TATAATAAA
1 -AATATTAAATTAAAGTAATACAAAAA-CAATACTAT-ATATA
74573052 AATATTAAATTAAAGTAATA-AAAAACAATACTATATATA
1 AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
74573091 AATAT
1 AATAT
74573096 ATATATATAT
Statistics
Matches: 96, Mismatches: 16, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
36 5 0.05
37 6 0.06
38 7 0.07
39 23 0.24
40 12 0.12
41 4 0.04
42 5 0.05
43 17 0.18
44 9 0.09
45 4 0.04
46 4 0.04
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (40 bp):
AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
Found at i:74573100 original size:12 final size:12
Alignment explanation
Indices: 74573078--74573120 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
74573068 AATAAAAAAC
74573078 AATACTATATATA
1 AATA-TATATATA
74573091 AATATATATATA
1 AATATATATATA
* * *
74573103 TATATACATAAA
1 AATATATATATA
74573115 AATATA
1 AATATA
74573121 CACTAATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
12 22 0.85
13 4 0.15
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (12 bp):
AATATATATATA
Found at i:74573354 original size:3 final size:3
Alignment explanation
Indices: 74573341--74573426 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
74573331 GAGGGCATAT
74573341 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
74573385 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
74573427 AACGAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 9 0.13
3 48 0.71
4 9 0.13
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:74573365 original size:12 final size:12
Alignment explanation
Indices: 74573341--74573423 Score: 73
Period size: 12 Copynumber: 6.8 Consensus size: 12
74573331 GAGGGCATAT
74573341 ATAATAT-AATA
1 ATAATATAAATA
74573352 ATAATATAAATA
1 ATAATATAAATA
74573364 ATAATATATACATGA
1 ATAATATA-A-AT-A
74573379 GA-AATA-ATAATA
1 -ATAATATA-AATA
74573391 ATAATATAAATA
1 ATAATATAAATA
* *
74573403 ATAGTAAAAATA
1 ATAATATAAATA
*
74573415 ATAAAATAA
1 ATAATATAA
74573424 TAAAACGAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
11 8 0.13
12 37 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:74573385 original size:21 final size:18
Alignment explanation
Indices: 74573346--74573426 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
74573336 CATATATAAT
*
74573346 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
74573364 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
74573385 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* *
74573403 ATAGTAAAAATA-ATAA-A
1 ATAATAATAATAGA-AATA
74573420 ATAATAA
1 ATAATAA
74573427 AACGAAGCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
17 8 0.15
18 24 0.44
19 5 0.09
20 5 0.09
21 12 0.22
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:74573414 original size:27 final size:27
Alignment explanation
Indices: 74573341--74573427 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
74573331 GAGGGCATAT
* *
74573341 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
74573367 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
74573391 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
74573418 A-AATAATAAA
1 ATAAT-ATAAA
74573428 ACGAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 7 0.15
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:74573774 original size:26 final size:25
Alignment explanation
Indices: 74573725--74573774 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
74573715 AAAAACTAGC
* *
74573725 CTTTCCAAGAAACAAAAATAACCTT
1 CTTTCCAAAAAACAAAAAAAACCTT
74573750 CTTTCCAAAAAACAAAAAAACACCT
1 CTTTCCAAAAAACAAAAAAA-ACCT
74573775 CCAAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.52, C:0.26, G:0.02, T:0.20
Consensus pattern (25 bp):
CTTTCCAAAAAACAAAAAAAACCTT
Found at i:74573779 original size:21 final size:22
Alignment explanation
Indices: 74573753--74573802 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
74573743 TAACCTTCTT
*
74573753 TCCAAAAAACAAAAAAA-CACC
1 TCCAAAAAAAAAAAAAACCACC
*
74573774 TCCAAAAAAAAAAAAAACCTCC
1 TCCAAAAAAAAAAAAAACCACC
74573796 TCCAAAA
1 TCCAAAA
74573803 CAAAGAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.64, C:0.28, G:0.00, T:0.08
Consensus pattern (22 bp):
TCCAAAAAAAAAAAAAACCACC
Found at i:74573802 original size:20 final size:21
Alignment explanation
Indices: 74573753--74573847 Score: 70
Period size: 22 Copynumber: 4.4 Consensus size: 21
74573743 TAACCTTCTT
* *
74573753 TCCAAAAAACA-AAAAAACACC
1 TCCAAAAAA-AGAAAAACCTCC
*
74573774 TCCAAAAAAAAAAAAAACCTCC
1 TCC-AAAAAAAGAAAAACCTCC
*
74573796 TCCAAAACAAAGAACAA--TCC
1 TCCAAAA-AAAGAAAAACCTCC
* *
74573816 TTCCAAAAAAAGAACAATCCTTC
1 -TCCAAAAAAAGAA-AAACCTCC
74573839 TCCAAAAAA
1 TCCAAAAAA
74573848 CCACCCCCTT
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
20 9 0.15
21 16 0.27
22 33 0.55
23 2 0.03
ACGTcount: A:0.59, C:0.27, G:0.02, T:0.12
Consensus pattern (21 bp):
TCCAAAAAAAGAAAAACCTCC
Found at i:74573820 original size:21 final size:20
Alignment explanation
Indices: 74573796--74573838 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
74573786 AAAAACCTCC
74573796 TCCAAAACAAAGAACAATCCT
1 TCCAAAA-AAAGAACAATCCT
74573817 TCCAAAAAAAGAACAATCCT
1 TCCAAAAAAAGAACAATCCT
74573837 TC
1 TC
74573839 TCCAAAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.51, C:0.28, G:0.05, T:0.16
Consensus pattern (20 bp):
TCCAAAAAAAGAACAATCCT
Found at i:74573842 original size:22 final size:22
Alignment explanation
Indices: 74573773--74573847 Score: 91
Period size: 22 Copynumber: 3.5 Consensus size: 22
74573763 AAAAAAACAC
* * * *
74573773 CTCCAAAAAAAAAAAAAACCTC
1 CTCCAAAAAAAGAACAATCCTT
74573795 CTCCAAAACAAAGAACAATCC-T
1 CTCCAAAA-AAAGAACAATCCTT
74573817 -TCCAAAAAAAGAACAATCCTT
1 CTCCAAAAAAAGAACAATCCTT
74573838 CTCCAAAAAA
1 CTCCAAAAAA
74573848 CCACCCCCTT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
20 12 0.26
21 8 0.17
22 17 0.37
23 9 0.20
ACGTcount: A:0.56, C:0.28, G:0.03, T:0.13
Consensus pattern (22 bp):
CTCCAAAAAAAGAACAATCCTT
Found at i:74573847 original size:21 final size:21
Alignment explanation
Indices: 74573795--74573847 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 21
74573785 AAAAAACCTC
74573795 CTCCAAAACAAAGAACAATCCTT
1 CTCC-AAA-AAAGAACAATCCTT
*
74573818 C-CAAAAAAAGAACAATCCTT
1 CTCCAAAAAAGAACAATCCTT
74573838 CTCCAAAAAA
1 CTCCAAAAAA
74573848 CCACCCCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 15 0.56
21 10 0.37
22 1 0.04
23 1 0.04
ACGTcount: A:0.53, C:0.28, G:0.04, T:0.15
Consensus pattern (21 bp):
CTCCAAAAAAGAACAATCCTT
Found at i:74573959 original size:21 final size:21
Alignment explanation
Indices: 74573921--74573977 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
74573911 TGGGGTGGTT
74573921 TAGGTGGCCAAGGGTGGTGGAG
1 TAGGTGGCCAA-GGTGGTGGAG
*
74573943 TTGGTGGCCAAGGTGGTGGAG
1 TAGGTGGCCAAGGTGGTGGAG
74573964 TAGGTGGCCAAGGT
1 TAGGTGGCCAAGGT
74573978 TTTTATTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
21 23 0.70
22 10 0.30
ACGTcount: A:0.18, C:0.11, G:0.51, T:0.21
Consensus pattern (21 bp):
TAGGTGGCCAAGGTGGTGGAG
Found at i:74573988 original size:4 final size:4
Alignment explanation
Indices: 74573979--74574005 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
74573969 GGCCAAGGTT
74573979 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
74574006 TTGTGTTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:74574393 original size:44 final size:44
Alignment explanation
Indices: 74574345--74575073 Score: 617
Period size: 44 Copynumber: 16.6 Consensus size: 44
74574335 TCTTCGATCC
* *
74574345 GTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
*
74574389 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * * *
74574433 GTTCCCTATAAGTACAGGGATGCC--ATGCTGAAATCTTTGATC-T
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTT
* * * * * * * *
74574476 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TT
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
*
74574520 CGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
1 -GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * *
74574565 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-T
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTT
** * * * * * * * *
74574608 GCTTTACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTT
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* *
74574653 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTTAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * *
74574697 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-T
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTT
* * * * * * * * *
74574740 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTT
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* *
74574785 GTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * *
74574829 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGA-TCT
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATTTTCAACT-T
* * * * * * * * *
74574872 GCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGA-TCT
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT-T
* * * *
74574917 GTTCCCTATAAGCACAGGGATGTCAAATCT-ACTATCTTCGA-TCC
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGA-TATTTTCAACT-T
* *
74574961 GTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
*
74575005 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
*
74575049 GTTCTCTATAAGCACAGGGATGCCA
1 GTTCCCTATAAGCACAGGGATGCCA
74575074 TGCTAAAATC
Statistics
Matches: 551, Mismatches: 106, Indels: 56
0.77 0.15 0.08
Matches are distributed among these distances:
42 9 0.02
43 31 0.06
44 465 0.84
45 38 0.07
46 8 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (44 bp):
GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
Found at i:74575019 original size:264 final size:264
Alignment explanation
Indices: 74574388--74575073 Score: 970
Period size: 264 Copynumber: 2.6 Consensus size: 264
74574378 GTTTTCAACT
* * *
74574388 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTC-AACTTGTTCCCTATAAGTACAGGG
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGAT-ATTTCGAACTCGTTCCCTATAAGCACAGGG
* * *
74574452 ATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
65 ATGCCATGCTGAAATCTTTCAACTGCTTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCG
*
74574517 ATTCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAG
130 ATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAG
* * *
74574582 GGATGCCATGCTGAAATCTTTGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTGCTATCTT
195 GGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTT
*
74574647 CGATT
260 CGATC
* ** *
74574652 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTTAACTTGTTCCCTATAAGCACAGGGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTCGAACTCGTTCCCTATAAGCACAGGGA
* * *
74574717 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTTCAACTGCTTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCGA
*
74574782 TTTGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAGG
131 TTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGG
74574847 GATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTC
196 GATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTC
74574912 GATC
261 GATC
* *
74574916 TGTTCCCTATAAGCACAGGGATGTCAAATCT-ACTATCTTCGATC-CGTTCCCTATAAGCACAGG
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGA-TAT-TTCGAACTCGTTCCCTATAAGCACAGG
*** * * * * * * *
74574979 GATGCCAAAT-CTGTTGT-TTTCAACTTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTT
64 GATGCC--ATGCTGAAATCTTTCAAC-TGCTTCACTATAAGCACAGGAATGTCAGATCTGCTATC
* * *
74575041 TTCAACTTGTTCTCTATAAGCACAGGGATGCCA
126 TTCGATTTGTTCCCTATAAGCACAGGGATGCCA
74575074 TGCTAAAATC
Statistics
Matches: 385, Mismatches: 31, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
263 4 0.01
264 369 0.96
265 10 0.03
266 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (264 bp):
TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTCGAACTCGTTCCCTATAAGCACAGGGA
TGCCATGCTGAAATCTTTCAACTGCTTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCGA
TTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGG
GATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTC
GATC
Found at i:74575035 original size:132 final size:132
Alignment explanation
Indices: 74574388--74574985 Score: 1031
Period size: 132 Copynumber: 4.5 Consensus size: 132
74574378 GTTTTCAACT
*
74574388 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGTACAGGGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
74574453 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
74574518 T-
131 TC
74574519 TCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGG
1 T-GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGG
*
74574584 ATGCCATGCTGAAATCTTTGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
65 ATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
*
74574649 ATT
130 ATC
*
74574652 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTTAACTTGTTCCCTATAAGCACAGGGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
74574717 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
*
74574782 TT
131 TC
*
74574784 TGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAGGGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
* *
74574849 TGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
74574914 TC
131 TC
* * * * *
74574916 TGTTCCCTATAAGCACAGGGATGTCAAATCT-ACTATCTTCGA-TCCGTTCCCTATAAGCACAGG
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGA-TGTTTTCAACT-TGTTCCCTATAAGCACAGG
74574979 GATGCCA
64 GATGCCA
74574986 AATCTGTTGT
Statistics
Matches: 448, Mismatches: 15, Indels: 7
0.95 0.03 0.01
Matches are distributed among these distances:
131 2 0.00
132 445 0.99
133 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
TC
Found at i:74575264 original size:68 final size:68
Alignment explanation
Indices: 74575185--74575383 Score: 285
Period size: 68 Copynumber: 2.9 Consensus size: 68
74575175 TCTTCTTCCA
* ** * *
74575185 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTTTGGAAGAATAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
*
74575250 -TT
66 CCT
* * *
74575252 GCTGAAACTTCAAGGAGATTTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
74575317 TCCT
65 TCCT
*
74575321 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGGA-AAAAGA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
74575384 AATTTGTAAT
Statistics
Matches: 117, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
67 6 0.05
68 110 0.94
69 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CCT
Found at i:74575691 original size:86 final size:87
Alignment explanation
Indices: 74575577--74575863 Score: 513
Period size: 87 Copynumber: 3.3 Consensus size: 87
74575567 AAATTCAGCT
* * *
74575577 TGTTACCCTACTGCTTAGGGGGTTAAGGTTTGTAAATTTGACTTGTTACCCTACTGCTTAGGGGG
1 TGTTTCCCTACTGCTTAGGGGGTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGG
*
74575642 TTAAAGCCCATCATCTTTGATT
66 TTAAAGCCCATCATCTTTGATC
74575664 TGTTTCCCTACTGCTTA-GGGGTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGG
1 TGTTTCCCTACTGCTTAGGGGGTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGG
74575728 TTAAAGCCCATCATCTTTGATC
66 TTAAAGCCCATCATCTTTGATC
* *
74575750 TGTTTCCCTACTCCTTAGAGGGTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGG
1 TGTTTCCCTACTGCTTAGGGGGTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGG
74575815 TTAAAGCCCATCATCTTTGATC
66 TTAAAGCCCATCATCTTTGATC
74575837 TGTTTCCCTACTGCTTAGGGGGTTAAG
1 TGTTTCCCTACTGCTTAGGGGGTTAAG
74575864 ATCTTCATCT
Statistics
Matches: 191, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
86 82 0.43
87 109 0.57
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.37
Consensus pattern (87 bp):
TGTTTCCCTACTGCTTAGGGGGTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGG
TTAAAGCCCATCATCTTTGATC
Found at i:74575809 original size:216 final size:215
Alignment explanation
Indices: 74575401--74576048 Score: 689
Period size: 216 Copynumber: 3.0 Consensus size: 215
74575391 AATTTCTAGC
* * * * *
74575401 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTT-AGG
** * * **** * *
74575466 GGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATC-TTC
65 GGTTAAGATCTGTAAATTCGGCTTGTTACCCTACTGATTAGGGGGTTAAGACCCAT-CATCTTTG
* * *
74575530 AGCCTGTTACCCTACTGCTTTGGGGTTTAAGGTTTGTAAATTCAGCTTGTTACCCTACTGCTTAG
129 A-TCTGTTTCCCTACTGCTTAGGGG-TTAAGGTTTGTAAATTCAGCTTGTTACCCTACTGCTTAG
*
74575595 GGGGTTAAGGTTTGTAAATTTGA-
192 GGGGTTAAGGCTTGTAAATTTGAT
* *
74575618 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATTTGTTTCCCTACTGCTTAGG
1 C-TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
* * *
74575683 GGTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTTG
65 GGTTAAGATCTGTAAATTCGGCTTGTTACCCTACTGATTAGGGGGTTAAGA-CCCATCATCTTTG
* *
74575747 ATCTGTTTCCCTACTCCTTAGAGGGTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGG
129 ATCTGTTTCCCTACTGCTTAG-GGGTTAAGGTTTGTAAATTCAGCTTGTTACCCTACTGCTTAGG
* *** **
74575812 GGGTTAAAGCCCATCATCTTTGAT
193 GGGTTAAGGCTTGT-AAATTTGAT
* ** * *
74575836 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGATCTGTTTCCCTACTACTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * * * *
74575900 AGATAAGATCTG-CAATTCGG-TCTGTTACCCTA-TCGATTAGGGGTTTAAGACCCTTCGTCTTT
66 -GTTAAGATCTGTAAATTCGGCT-TGTTACCCTACT-GATTAGGGGGTTAAGACCCATCATCTTT
* * * *
74575962 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTATTGCTT
128 GATCTGTTTCCCTACTGCTTA-GGGGTTAAGGTTTGTAAA--TTCAGCTTGTTACCCTACTGCTT
* *
74576027 AGGGGCTTAAGGCTTGTGAATT
190 AGGGGGTTAAGGCTTGTAAATT
74576049 CACTGATTCT
Statistics
Matches: 358, Mismatches: 60, Indels: 26
0.81 0.14 0.06
Matches are distributed among these distances:
215 2 0.01
216 175 0.49
217 95 0.27
218 86 0.24
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (215 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
GTTAAGATCTGTAAATTCGGCTTGTTACCCTACTGATTAGGGGGTTAAGACCCATCATCTTTGAT
CTGTTTCCCTACTGCTTAGGGGTTAAGGTTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGG
TTAAGGCTTGTAAATTTGAT
Found at i:74575886 original size:43 final size:43
Alignment explanation
Indices: 74575401--74576037 Score: 323
Period size: 43 Copynumber: 14.7 Consensus size: 43
74575391 AATTTCTAGC
* * ** *
74575401 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GATCTTCATCTTCGAT
* * * * ** * *
74575445 CTATTTCCCAACTGCTTAAGGGGTTAAGATCTGT-AAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCT-TCATCTTCGAT
* * * *
74575488 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * * * ** *
74575533 CTGTTACCCTACTGCTTTGGGGTTTAAGGT-TTGTAAATTC-AG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTT-CATCTTCGAT
* * *
74575575 CTTGTTACCCTACTGCTTAGGGGGTTAAGGTTTGTAAAT-TT-GA-
1 C-TGTTACCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGAT
** * *
74575618 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGAT
1 C-TGTTACCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
* * * * ** *
74575663 TTGTTTCCCTACTGCTTA-GGGGTTAAGGT-TTGTAAATTCG-G
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTT-CATCTTCGAT
** * *
74575704 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGAT
1 C-TGTTACCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
* * * * * ** *
74575749 CTGTTTCCCTACTCCTTAGAGGGTTAAGGT-TTGTAAATTCG-G
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTT-CATCTTCGAT
** * *
74575791 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGAT
1 C-TGTTACCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
*
74575836 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * * * *
74575879 CTGTTTCCCTACTACTTAGGGAGATAAGATCTGCA-ATTCGGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * *
74575921 CTGTTACCCTA-TCGATTAGGGGTTTAAGACCCTTCGTCTTTGAT
1 CTGTTACCCTACT-GCTTAGGGGGTTAAGA-TCTTCATCTTCGAT
* * *
74575965 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* *
74576010 CTGTTACCCTATTGCTTAGGGGCTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
74576038 GCTTGTGAAT
Statistics
Matches: 447, Mismatches: 116, Indels: 59
0.72 0.19 0.09
Matches are distributed among these distances:
41 2 0.00
42 54 0.12
43 187 0.42
44 137 0.31
45 67 0.15
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
Found at i:74575889 original size:87 final size:88
Alignment explanation
Indices: 74575577--74575899 Score: 451
Period size: 87 Copynumber: 3.7 Consensus size: 88
74575567 AAATTCAGCT
* * * *
74575577 TGTTACCCTACTGCTTAGGGGGTTAAGGTTTGTAAATTTGA-CTTGTTACCCTACTGCTTAGGGG
1 TGTTTCCCTACTGCTTAGGGGGTTAAGGTTTGCATATTCGAGCTTGTTACCCTACTGCTTAGGGG
*
74575641 GTTAAAGCCCATCATCTTTGATT
66 GTTAAAGCCCATCATCTTTGATC
* *
74575664 TGTTTCCCTACTGCTTA-GGGGTTAAGGTTTGTAAATTCG-GCTTGTTACCCTACTGCTTAGGGG
1 TGTTTCCCTACTGCTTAGGGGGTTAAGGTTTGCATATTCGAGCTTGTTACCCTACTGCTTAGGGG
74575727 GTTAAAGCCCATCATCTTTGATC
66 GTTAAAGCCCATCATCTTTGATC
* * * *
74575750 TGTTTCCCTACTCCTTAGAGGGTTAAGGTTTGTAAATTCG-GCTTGTTACCCTACTGCTTAGGGG
1 TGTTTCCCTACTGCTTAGGGGGTTAAGGTTTGCATATTCGAGCTTGTTACCCTACTGCTTAGGGG
74575814 GTTAAAGCCCATCATCTTTGATC
66 GTTAAAGCCCATCATCTTTGATC
* * * * *
74575837 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTT-CATCTTCGATC-TGTTTCCCTACTACTTAGGG
1 TGTTTCCCTACTGCTTAGGGGGTTAAGGT-TTGCATATTCGAGCTTGTTACCCTACTGCTTAGGG
74575900 AGATAAGATC
Statistics
Matches: 218, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
86 82 0.38
87 133 0.61
88 3 0.01
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (88 bp):
TGTTTCCCTACTGCTTAGGGGGTTAAGGTTTGCATATTCGAGCTTGTTACCCTACTGCTTAGGGG
GTTAAAGCCCATCATCTTTGATC
Found at i:74575940 original size:129 final size:130
Alignment explanation
Indices: 74575706--74575996 Score: 376
Period size: 129 Copynumber: 2.2 Consensus size: 130
74575696 AAATTCGGCT
* ** * * *
74575706 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATCTGTTTCCCTACTCCTTAGAGG
1 TGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGATCTGTTTCCCTACTACTTAGAGG
* * * *
74575771 GTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATCTTTGA
65 GATAAGATCTGTAAATTCGGCTTGTTACCCTACTGATTA-GGGGTTAAAGACCCATCATCTTTGA
74575835 TC
129 TC
74575837 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTACTTAG-GGA
1 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTACTTAGAGG-
* * * *
74575901 GATAAGATCTG-CAATTCGG-TCTGTTACCCTA-TCGATTAGGGGTTTAAGACCCTTCGTCTTTG
65 GATAAGATCTGTAAATTCGGCT-TGTTACCCTACT-GATTAGGGGTTAAAGACCCATCATCTTTG
74575963 ATC
128 ATC
74575966 TGTTTCCCTACTGCTTAGGGGGTTAAGATCT
1 TGTTTCCCTACTGCTTAGGGGGTTAAGATCT
74575997 GTAAATCTTC
Statistics
Matches: 142, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
128 11 0.08
129 68 0.48
130 40 0.28
131 23 0.16
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (130 bp):
TGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTACTTAGAGGG
ATAAGATCTGTAAATTCGGCTTGTTACCCTACTGATTAGGGGTTAAAGACCCATCATCTTTGATC
Found at i:74576207 original size:66 final size:66
Alignment explanation
Indices: 74576101--74576227 Score: 218
Period size: 66 Copynumber: 1.9 Consensus size: 66
74576091 TCTATGCTTA
* *
74576101 TGTCAAATGATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGCGTTATGAAT
74576166 G
66 G
**
74576167 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGCGTTAT
1 TGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGCGTTAT
74576228 TATATGAATG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGCGTTATGAAT
G
Found at i:74580244 original size:19 final size:20
Alignment explanation
Indices: 74580220--74580266 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
74580210 AGTGAAAGTT
74580220 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
74580239 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
74580259 -AATGCAAA
1 TAATGCAAA
74580267 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:74582798 original size:39 final size:35
Alignment explanation
Indices: 74582740--74582839 Score: 92
Period size: 39 Copynumber: 2.6 Consensus size: 35
74582730 ACACACTACT
*
74582740 ATATAATAATAATAATAAATATAGAAATACAAAAAGCAA
1 ATATAATAAAAAT-ATAAATATAGAAATA-AAAAA-C-A
* *
74582779 ATATAATAAAAATATTAAATTAAAGTAATAAAAAACA
1 ATATAATAAAAATA-TAAA-TATAGAAATAAAAAACA
*
74582816 ATACTATATATAAATATAAATATA
1 ATA-TA-ATAAAAATATAAATATA
74582840 TATATACATA
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
37 7 0.13
38 8 0.15
39 29 0.56
40 8 0.15
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (35 bp):
ATATAATAAAAATATAAATATAGAAATAAAAAACA
Found at i:74582843 original size:18 final size:18
Alignment explanation
Indices: 74582806--74582857 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
74582796 AATTAAAGTA
74582806 ATAAA-AAACAATACTATAT
1 ATAAATAAA-AATA-TATAT
*
74582825 ATAAATATAAATATATAT
1 ATAAATAAAAATATATAT
*
74582843 ATACATAAAAATATA
1 ATAAATAAAAATATA
74582858 CACTAATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 18 0.62
19 9 0.31
20 2 0.07
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
ATAAATAAAAATATATAT
Found at i:74583094 original size:3 final size:3
Alignment explanation
Indices: 74583081--74583166 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
74583071 GAGGGCATAT
74583081 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
74583125 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
74583167 AACGAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 9 0.13
3 48 0.71
4 9 0.13
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:74583105 original size:12 final size:12
Alignment explanation
Indices: 74583081--74583163 Score: 73
Period size: 12 Copynumber: 6.8 Consensus size: 12
74583071 GAGGGCATAT
74583081 ATAATAT-AATA
1 ATAATATAAATA
74583092 ATAATATAAATA
1 ATAATATAAATA
74583104 ATAATATATACATGA
1 ATAATATA-A-AT-A
74583119 GA-AATA-ATAATA
1 -ATAATATA-AATA
74583131 ATAATATAAATA
1 ATAATATAAATA
* *
74583143 ATAGTAAAAATA
1 ATAATATAAATA
*
74583155 ATAAAATAA
1 ATAATATAA
74583164 TAAAACGAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
11 8 0.13
12 37 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:74583125 original size:21 final size:18
Alignment explanation
Indices: 74583086--74583166 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
74583076 CATATATAAT
*
74583086 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
74583104 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
74583125 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* *
74583143 ATAGTAAAAATA-ATAA-A
1 ATAATAATAATAGA-AATA
74583160 ATAATAA
1 ATAATAA
74583167 AACGAAGCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
17 8 0.15
18 24 0.44
19 5 0.09
20 5 0.09
21 12 0.22
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:74583154 original size:27 final size:27
Alignment explanation
Indices: 74583081--74583167 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
74583071 GAGGGCATAT
* *
74583081 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
74583107 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
74583131 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
74583158 A-AATAATAAA
1 ATAAT-ATAAA
74583168 ACGAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 7 0.15
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:74583529 original size:22 final size:22
Alignment explanation
Indices: 74583497--74583542 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
74583487 CCTTCTTTCC
*
74583497 AAAAAACAAAAAACACCTCCAA
1 AAAAAAAAAAAAACACCTCCAA
* *
74583519 AAAAAAAAAAAACCTCCTCCAA
1 AAAAAAAAAAAAACACCTCCAA
74583541 AA
1 AA
74583543 CAAAGAACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.67, C:0.26, G:0.00, T:0.07
Consensus pattern (22 bp):
AAAAAAAAAAAAACACCTCCAA
Found at i:74583542 original size:20 final size:20
Alignment explanation
Indices: 74583494--74583535 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
74583484 TAACCTTCTT
74583494 TCCAAAAAACAAAAAACACC
1 TCCAAAAAACAAAAAACACC
*
74583514 TCCAAAAAA-AAAAAAAACC
1 TCCAAAAAACAAAAAACACC
74583533 TCC
1 TCC
74583536 TCCAAAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.64, C:0.29, G:0.00, T:0.07
Consensus pattern (20 bp):
TCCAAAAAACAAAAAACACC
Found at i:74583688 original size:21 final size:21
Alignment explanation
Indices: 74583650--74583706 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
74583640 TGGGGTGGTT
74583650 TAGGTGGCCAAGGGTGGTGGAG
1 TAGGTGGCCAA-GGTGGTGGAG
*
74583672 TTGGTGGCCAAGGTGGTGGAG
1 TAGGTGGCCAAGGTGGTGGAG
74583693 TAGGTGGCCAAGGT
1 TAGGTGGCCAAGGT
74583707 TTTTATTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
21 23 0.70
22 10 0.30
ACGTcount: A:0.18, C:0.11, G:0.51, T:0.21
Consensus pattern (21 bp):
TAGGTGGCCAAGGTGGTGGAG
Found at i:74585877 original size:21 final size:21
Alignment explanation
Indices: 74585823--74585877 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
74585813 CATTTTTTCA
74585823 GATTAAAA-ATAA-TATTTACC
1 GATTAAAATA-AATTATTTACC
* *
74585843 -A-TAATATTAATTATTTACC
1 GATTAAAATAAATTATTTACC
74585862 GATTAAAATAAATTAT
1 GATTAAAATAAATTAT
74585878 AGAATATCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
18 6 0.22
19 9 0.33
20 1 0.04
21 11 0.41
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (21 bp):
GATTAAAATAAATTATTTACC
Found at i:74597491 original size:25 final size:25
Alignment explanation
Indices: 74597457--74597507 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
74597447 GCTGCATCTA
74597457 AAGAAGCAGAATGGTTAAGAAATTT
1 AAGAAGCAGAATGGTTAAGAAATTT
74597482 AAGAAGCAGAATGGTTAAGAAATTT
1 AAGAAGCAGAATGGTTAAGAAATTT
74597507 A
1 A
74597508 CTTTATGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.04, G:0.24, T:0.24
Consensus pattern (25 bp):
AAGAAGCAGAATGGTTAAGAAATTT
Found at i:74598326 original size:20 final size:20
Alignment explanation
Indices: 74598292--74598333 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
74598282 AACTATTTAA
** *
74598292 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
74598312 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
74598332 AT
1 AT
74598334 GTTTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:74600577 original size:8 final size:8
Alignment explanation
Indices: 74600564--74600622 Score: 61
Period size: 8 Copynumber: 7.4 Consensus size: 8
74600554 AAGTAAATGA
*
74600564 TATTATGT
1 TATTATAT
74600572 TATTATAT
1 TATTATAT
74600580 TATTATCA-
1 TATTAT-AT
74600588 TATTACTAT
1 TATTA-TAT
74600597 TA-TAT-T
1 TATTATAT
74600603 ATATTATAT
1 -TATTATAT
74600612 TATTATAT
1 TATTATAT
74600620 TAT
1 TAT
74600623 ATAACATAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
6 1 0.02
7 3 0.07
8 35 0.80
9 5 0.11
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (8 bp):
TATTATAT
Found at i:74600580 original size:5 final size:5
Alignment explanation
Indices: 74600572--74600624 Score: 65
Period size: 5 Copynumber: 10.6 Consensus size: 5
74600562 GATATTATGT
*
74600572 TATTA TATTA TTATCA TATTA CTATTA TATTA TATTA TA-T- TATTA TATTA
1 TATTA TATTA -TATTA TATTA -TATTA TATTA TATTA TATTA TATTA TATTA
74600622 TAT
1 TAT
74600625 AACATAAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
3 2 0.05
4 2 0.05
5 29 0.69
6 9 0.21
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (5 bp):
TATTA
Found at i:74600623 original size:13 final size:13
Alignment explanation
Indices: 74600563--74600624 Score: 65
Period size: 13 Copynumber: 4.7 Consensus size: 13
74600553 TAAGTAAATG
*
74600563 ATATTATGTTATT
1 ATATTATATTATT
*
74600576 ATA-T-TATTATC
1 ATATTATATTATT
74600587 ATATTACTATTATATT
1 ATATTA-TA-T-TATT
74600603 ATATTATATTATT
1 ATATTATATTATT
74600616 ATATTATAT
1 ATATTATAT
74600625 AACATAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
11 8 0.20
12 2 0.05
13 16 0.39
14 3 0.07
15 3 0.07
16 9 0.22
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (13 bp):
ATATTATATTATT
Found at i:74606956 original size:26 final size:26
Alignment explanation
Indices: 74606925--74607006 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
74606915 TGAAATACCC
*
74606925 ATCATGAAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
74606951 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
74606977 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
74607003 ATCA
1 ATCA
74607007 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:74612722 original size:25 final size:26
Alignment explanation
Indices: 74612693--74612773 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
74612683 TGAAATGCCC
74612693 ATCATGGAACATTTACCTAA-CCATT
1 ATCATGGAACATTTACCTAACCCATT
*
74612718 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
74612744 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74612770 ATCA
1 ATCA
74612774 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 20 0.37
26 34 0.63
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:74615680 original size:15 final size:15
Alignment explanation
Indices: 74615657--74615699 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
74615647 TAATTGTGAT
*
74615657 TAAGATTTAATTAAC
1 TAAGGTTTAATTAAC
* *
74615672 TAAGGTTTAACTAAT
1 TAAGGTTTAATTAAC
74615687 TAAGG-TTAATTAA
1 TAAGGTTTAATTAA
74615700 GGTTTAATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.40
Consensus pattern (15 bp):
TAAGGTTTAATTAAC
Found at i:74620732 original size:75 final size:75
Alignment explanation
Indices: 74620639--74620788 Score: 264
Period size: 75 Copynumber: 2.0 Consensus size: 75
74620629 ACAGGATTTG
* *
74620639 AGATTTACAATATCAAAGTTTTTTATTACATAGTTATTATGCGAGTAATTTTTTTATTTTAAAAT
1 AGATTTACAATATCAAAGTTTTTTATTACATAGTTATCATGCGAGTAATTTTTTAATTTTAAAAT
**
74620704 ATTACACTAA
66 AACACACTAA
74620714 AGATTTACAATATCAAAGTTTTTTATTACATAGTTATCATGCGAGTAATTTTTTAATTTTAAAAT
1 AGATTTACAATATCAAAGTTTTTTATTACATAGTTATCATGCGAGTAATTTTTTAATTTTAAAAT
74620779 AACACACTAA
66 AACACACTAA
74620789 CATATTTAAC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (75 bp):
AGATTTACAATATCAAAGTTTTTTATTACATAGTTATCATGCGAGTAATTTTTTAATTTTAAAAT
AACACACTAA
Found at i:74620885 original size:25 final size:23
Alignment explanation
Indices: 74620838--74620896 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 23
74620828 ACTTAAATTT
74620838 TTAAATTTAAAAAAATAAAAAAA
1 TTAAATTTAAAAAAATAAAAAAA
**
74620861 TTAAATTCCTAAAAAAATATGAAAA
1 TTAAATT--TAAAAAAATAAAAAAA
*
74620886 CTAAA-TTAAAA
1 TTAAATTTAAAA
74620897 TGTATAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 5 0.16
23 7 0.23
24 1 0.03
25 18 0.58
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (23 bp):
TTAAATTTAAAAAAATAAAAAAA
Found at i:74621284 original size:13 final size:13
Alignment explanation
Indices: 74621266--74621290 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74621256 ACCTGTTCGT
74621266 ATTAATTTTTTAG
1 ATTAATTTTTTAG
74621279 ATTAATTTTTTA
1 ATTAATTTTTTA
74621291 TATAGAACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
ATTAATTTTTTAG
Found at i:74628992 original size:10 final size:10
Alignment explanation
Indices: 74628977--74629003 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
74628967 GGAAATCAGA
74628977 AAATAAAAAT
1 AAATAAAAAT
74628987 AAATAAAAAT
1 AAATAAAAAT
74628997 AAATAAA
1 AAATAAA
74629004 CAGCACCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:74632326 original size:45 final size:45
Alignment explanation
Indices: 74632262--74632352 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
74632252 GACATTCTGA
74632262 ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
1 ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
74632307 ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
1 ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
74632352 A
1 A
74632353 ATAATAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (45 bp):
ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
Found at i:74633518 original size:15 final size:15
Alignment explanation
Indices: 74633498--74633527 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74633488 CAGTTTATTT
*
74633498 ATATTAGGATAATTA
1 ATATTAAGATAATTA
74633513 ATATTAAGATAATTA
1 ATATTAAGATAATTA
74633528 TTATGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:74640245 original size:34 final size:34
Alignment explanation
Indices: 74640207--74640283 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
74640197 TAAAAAATTC
*
74640207 ATGTCTATACA-AACATATATCTATTTGGACGGTT
1 ATGTCTATA-AGAACATATATCTATTTGGACAGTT
* *
74640241 ATGTCTATAAGAAGATATATCTATTTGGCCAGTT
1 ATGTCTATAAGAACATATATCTATTTGGACAGTT
74640275 ATGTCTATA
1 ATGTCTATA
74640284 TGAAAGACAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
33 1 0.03
34 38 0.97
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (34 bp):
ATGTCTATAAGAACATATATCTATTTGGACAGTT
Found at i:74641548 original size:16 final size:16
Alignment explanation
Indices: 74641523--74641556 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
74641513 GAATGAATCC
*
74641523 TTTAATTTCAATCATA
1 TTTAAGTTCAATCATA
*
74641539 TTTAAGTTCAATTATA
1 TTTAAGTTCAATCATA
74641555 TT
1 TT
74641557 CTAATGAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.09, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTAAGTTCAATCATA
Found at i:74650702 original size:112 final size:112
Alignment explanation
Indices: 74650505--74650728 Score: 421
Period size: 112 Copynumber: 2.0 Consensus size: 112
74650495 GTTTTAAGCA
* *
74650505 TTATTGCATTCTTCTATTCTTTGTACTCTTGTCGATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
1 TTATTGCATTCTGCTATTCTTTGTACTCTTGTCAATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
*
74650570 GAACCCTAGGATTGCATTGATTATTTATTTATACTGAAGTACACATC
66 GAACCCTAGGATTGCATTGATTATTTATTTATACGGAAGTACACATC
74650617 TTATTGCATTCTGCTATTCTTTGTACTCTTGTCAATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
1 TTATTGCATTCTGCTATTCTTTGTACTCTTGTCAATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
74650682 GAACCCTAGGATTGCATTGATTATTTATTTATACGGAAGTACACATC
66 GAACCCTAGGATTGCATTGATTATTTATTTATACGGAAGTACACATC
74650729 GTTTTAGTTA
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 109 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.42
Consensus pattern (112 bp):
TTATTGCATTCTGCTATTCTTTGTACTCTTGTCAATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
GAACCCTAGGATTGCATTGATTATTTATTTATACGGAAGTACACATC
Found at i:74652681 original size:26 final size:26
Alignment explanation
Indices: 74652645--74652701 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
74652635 TGTCTGAAGG
74652645 AATATGTGTTGAACAAAAATGTTGCT
1 AATATGTGTTGAACAAAAATGTTGCT
*
74652671 AATATGTGTTGAACATAAATGTTGCT
1 AATATGTGTTGAACAAAAATGTTGCT
74652697 AATAT
1 AATAT
74652702 CATAGATACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.37
Consensus pattern (26 bp):
AATATGTGTTGAACAAAAATGTTGCT
Found at i:74668671 original size:17 final size:17
Alignment explanation
Indices: 74668651--74668735 Score: 80
Period size: 16 Copynumber: 5.5 Consensus size: 17
74668641 TTTAATTCTT
* *
74668651 TAAAATTTTTAAAAATA
1 TAAAATTATTAAAAAGA
74668668 T-AAATTATTAAAAAGA
1 TAAAATTATTAAAAAGA
74668684 TAAAATTATT----A-A
1 TAAAATTATTAAAAAGA
*
74668696 -AAAATT-TTAAAAATA
1 TAAAATTATTAAAAAGA
74668711 T-AAATTATTAAAAAGA
1 TAAAATTATTAAAAAGA
74668727 TAAAATTAT
1 TAAAATTAT
74668736 ATTTTTACGA
Statistics
Matches: 56, Mismatches: 3, Indels: 18
0.73 0.04 0.23
Matches are distributed among these distances:
10 2 0.04
11 6 0.11
12 1 0.02
13 1 0.02
14 1 0.02
15 6 0.11
16 23 0.41
17 16 0.29
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
TAAAATTATTAAAAAGA
Found at i:74668712 original size:43 final size:43
Alignment explanation
Indices: 74668652--74668735 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 43
74668642 TTAATTCTTT
*
74668652 AAAATTTTTAAAAATATAAATTATTAAAAAGATAAAATTATTA
1 AAAAATTTTAAAAATATAAATTATTAAAAAGATAAAATTATTA
74668695 AAAAATTTTAAAAATATAAATTATTAAAAAGATAAAATTAT
1 AAAAATTTTAAAAATATAAATTATTAAAAAGATAAAATTAT
74668736 ATTTTTACGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (43 bp):
AAAAATTTTAAAAATATAAATTATTAAAAAGATAAAATTATTA
Found at i:74670303 original size:16 final size:17
Alignment explanation
Indices: 74670272--74670304 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
74670262 ATAATAATTA
*
74670272 TATTTATTCTAAATATT
1 TATTTATTCAAAATATT
74670289 TATTTATT-AAAATATT
1 TATTTATTCAAAATATT
74670305 ACATATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (17 bp):
TATTTATTCAAAATATT
Found at i:74670853 original size:17 final size:17
Alignment explanation
Indices: 74670831--74670866 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
74670821 TGCAATTGAA
74670831 TATATAAATTTTA-ATTT
1 TATAT-AATTTTATATTT
74670848 TATATAATTTTATATTT
1 TATATAATTTTATATTT
74670865 TA
1 TA
74670867 ATTTTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TATATAATTTTATATTT
Found at i:74671298 original size:17 final size:17
Alignment explanation
Indices: 74671276--74671308 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
74671266 TTTGGTTGAG
74671276 TTTTAAAAATTTAAAAT
1 TTTTAAAAATTTAAAAT
74671293 TTTTAAAAATTTAAAA
1 TTTTAAAAATTTAAAA
74671309 AAAAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTTAAAAATTTAAAAT
Found at i:74678931 original size:19 final size:18
Alignment explanation
Indices: 74678891--74678931 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
74678881 TAAAATAACT
74678891 TTTTAGACATTTTAAAAA
1 TTTTAGACATTTTAAAAA
74678909 -TTTA-ACATTATCTAAAAA
1 TTTTAGACATT-T-TAAAAA
74678927 TTTTA
1 TTTTA
74678932 TTGAAGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
16 5 0.25
17 5 0.25
18 6 0.30
19 4 0.20
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (18 bp):
TTTTAGACATTTTAAAAA
Found at i:74681823 original size:21 final size:19
Alignment explanation
Indices: 74681787--74681826 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
74681777 AAAACTTGAA
*
74681787 AAAATATTAACATAAAATT
1 AAAATATTAAAATAAAATT
74681806 AAAATATCTAAAATTAAAATT
1 AAAATAT-TAAAA-TAAAATT
74681827 TCTTTTCTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 4 0.22
21 7 0.39
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATATTAAAATAAAATT
Found at i:74689754 original size:26 final size:26
Alignment explanation
Indices: 74689718--74689827 Score: 159
Period size: 26 Copynumber: 4.2 Consensus size: 26
74689708 CATGTAATTC
74689718 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAAACCA
74689744 TTATCATGAAACATTTACCT-AACTCA
1 TTATCATGAAACATTTACCTAAAC-CA
* * *
74689770 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAAACCA
* *
74689796 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAAACCA
74689822 TTATCA
1 TTATCA
74689828 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
25 3 0.04
26 72 0.94
27 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAAACCA
Found at i:74689797 original size:52 final size:52
Alignment explanation
Indices: 74689718--74689827 Score: 175
Period size: 52 Copynumber: 2.1 Consensus size: 52
74689708 CATGTAATTC
*
74689718 TTATCATGAAACATTTACCTAAACCATTATCATGAAACATTTACCTAACTCA
1 TTATCATGAAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCA
* * * *
74689770 TTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCA
74689822 TTATCA
1 TTATCA
74689828 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCA
Found at i:74690468 original size:19 final size:19
Alignment explanation
Indices: 74690439--74690520 Score: 73
Period size: 19 Copynumber: 4.3 Consensus size: 19
74690429 AATGGATAAA
74690439 TTTAGATAATTTTTAATATT
1 TTTA-ATAATTTTTAATATT
* *
74690459 TTTAATAATTTCATAATTTT
1 TTTAATAATTT-TTAATATT
74690479 TTTAGA-AA-TTTTAA-ATT
1 TTTA-ATAATTTTTAATATT
*
74690496 TTTAATAATGATTT-ATATT
1 TTTAATAAT-TTTTAATATT
74690515 TTTAAT
1 TTTAAT
74690521 TTTTAAACTA
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
16 1 0.02
17 8 0.16
18 4 0.08
19 21 0.41
20 16 0.31
21 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.59
Consensus pattern (19 bp):
TTTAATAATTTTTAATATT
Found at i:74693441 original size:29 final size:31
Alignment explanation
Indices: 74693390--74693458 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
74693380 TATATATAGA
*
74693390 CTAAATAAAATAGTAAAATAATAA-AA-TAT
1 CTAATTAAAATAGTAAAATAATAATAATTAT
* *
74693419 CTTATTAAAATA-TTAAATAAATAATAATTAT
1 CTAATTAAAATAGTAAAAT-AATAATAATTAT
74693450 CTAATTAAA
1 CTAATTAAA
74693459 TAATTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 5 0.15
29 15 0.45
30 2 0.06
31 11 0.33
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.35
Consensus pattern (31 bp):
CTAATTAAAATAGTAAAATAATAATAATTAT
Found at i:74694363 original size:30 final size:30
Alignment explanation
Indices: 74694301--74694364 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
74694291 GAAAAATCAA
* * *
74694301 ATATTGGATCTTCCTAAGCTCTTAAACAAG
1 ATATTGAATCTTCCCAAGCTCCTAAACAAG
* *
74694331 ATATTGAATCTTCCCAAGCTCCTGAACGAG
1 ATATTGAATCTTCCCAAGCTCCTAAACAAG
74694361 ATAT
1 ATAT
74694365 CTAGTTTTCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (30 bp):
ATATTGAATCTTCCCAAGCTCCTAAACAAG
Found at i:74697517 original size:46 final size:46
Alignment explanation
Indices: 74697446--74697614 Score: 241
Period size: 46 Copynumber: 3.7 Consensus size: 46
74697436 GTGTGCTCTC
**
74697446 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
* *
74697492 TGATATGAAATGAATAAGACTATGGTTGAAAGGTACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
* *
74697538 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
* * *
74697584 TGACA-GAAAATGAGTAAGACCATAGTTGAAA
1 TGATATG-AAATGAATAAGACCATGGTTGAAA
74697615 AACACTATGG
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 109 0.99
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:74700236 original size:37 final size:37
Alignment explanation
Indices: 74700173--74700244 Score: 85
Period size: 37 Copynumber: 1.9 Consensus size: 37
74700163 TACACTTTCT
**
74700173 CAATTCAATATACATTTCAATTATTCACATA-TAATCA
1 CAATTCAATATACATTTCAACAATTCA-ATACTAATCA
*
74700210 CAATTCAATTTA-ATTTCATACAATTCAATACTAAT
1 CAATTCAATATACATTTCA-ACAATTCAATACTAAT
74700245 ACTTACCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
36 9 0.30
37 21 0.70
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (37 bp):
CAATTCAATATACATTTCAACAATTCAATACTAATCA
Found at i:74700632 original size:22 final size:22
Alignment explanation
Indices: 74700593--74700651 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
74700583 GTTTTAAGAA
*
74700593 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
74700614 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
74700636 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
74700652 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:74700668 original size:26 final size:24
Alignment explanation
Indices: 74700622--74700681 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
74700612 ATTTGTTTTA
*
74700622 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
74700646 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
74700672 TTTTTTATTT
1 ATATTTATTT
74700682 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:74701186 original size:17 final size:18
Alignment explanation
Indices: 74701152--74701187 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
74701142 TGAATTTCTA
74701152 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
74701170 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
74701187 T
1 T
74701188 AACTCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:74701654 original size:17 final size:18
Alignment explanation
Indices: 74701627--74701670 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
74701617 CCTTCATTTC
74701627 TTTCTTTTATTCTTTTA-G
1 TTTC-TTTATTCTTTTATG
74701645 TTTCTTTATTCTTTTATG
1 TTTCTTTATTCTTTTATG
*
74701663 TTTATTTA
1 TTTCTTTA
74701671 CTTTATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.73
Consensus pattern (18 bp):
TTTCTTTATTCTTTTATG
Found at i:74701683 original size:23 final size:23
Alignment explanation
Indices: 74701640--74701683 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
74701630 CTTTTATTCT
**
74701640 TTTAGTTTCTTTATTCTTTTATG
1 TTTAGTTTCTTTATTAATTTATG
74701663 TTTA-TTTACTTTATTAATTTA
1 TTTAGTTT-CTTTATTAATTTA
74701684 ATAATAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.20, C:0.07, G:0.05, T:0.68
Consensus pattern (23 bp):
TTTAGTTTCTTTATTAATTTATG
Found at i:74701872 original size:19 final size:20
Alignment explanation
Indices: 74701850--74701894 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
74701840 TTCATAATAT
*
74701850 AATAATATAATATTAA-TTA
1 AATAATATAATAATAACTTA
74701869 AATAATATAATAATAACTTA
1 AATAATATAATAATAACTTA
*
74701889 ATTAAT
1 AATAAT
74701895 GGATAAAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
AATAATATAATAATAACTTA
Found at i:74701872 original size:24 final size:24
Alignment explanation
Indices: 74701843--74701893 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 24
74701833 AATTTACTTC
74701843 ATAATATAATAATATAATATTAATTAA
1 ATAATATAAT-A-ATAA-ATTAATTAA
*
74701870 ATAATATAATAATAACTTAATTAA
1 ATAATATAATAATAAATTAATTAA
74701894 TGGATAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 8 0.35
25 4 0.17
26 1 0.04
27 10 0.43
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (24 bp):
ATAATATAATAATAAATTAATTAA
Found at i:74704928 original size:22 final size:22
Alignment explanation
Indices: 74704889--74704931 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
74704879 CATATATATA
*
74704889 TATTAAAAACATATAAAAAAAT
1 TATTAAAAACATAGAAAAAAAT
74704911 TATTAAAAA-ATAAGAAAAAAA
1 TATTAAAAACAT-AGAAAAAAA
74704932 AACTTACCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (22 bp):
TATTAAAAACATAGAAAAAAAT
Found at i:74705530 original size:22 final size:22
Alignment explanation
Indices: 74705505--74705559 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
74705495 TTAATTTTAA
*
74705505 TATTATGTA-TACTATTATATTT
1 TATTATCTATTACTATTATA-TT
*
74705527 TATTA-CTATTATTATTATATT
1 TATTATCTATTACTATTATATT
*
74705548 TATTATTTATTA
1 TATTATCTATTA
74705560 GAATTAGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 9 0.32
22 19 0.68
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (22 bp):
TATTATCTATTACTATTATATT
Found at i:74705541 original size:3 final size:3
Alignment explanation
Indices: 74705484--74705651 Score: 68
Period size: 3 Copynumber: 56.7 Consensus size: 3
74705474 ACTTTTTCTC
* *
74705484 ATT ATT -TT ATT -TT AATT -TT AAT ATT ATGT A-T ACT ATT A-T ATT
1 ATT ATT ATT ATT ATT -ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT
* ** *
74705526 -TT ATT ACT ATT ATT ATT A-T ATTT ATT ATTT ATT AGA ATT AGT ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT A-TT ATT ATT ATT ATT ATT
* * * * *
74705571 ATT TTT ACTT AAT ACTT A-T ATAT ATT ATAT AGT ATT ATT AAT AGT -TT
1 ATT ATT A-TT ATT A-TT ATT AT-T ATT AT-T ATT ATT ATT ATT ATT ATT
* * *
74705618 ATT ATT ATT ATT ATT TTT CTT AAT ATT A-T ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
74705652 GTATATATTC
Statistics
Matches: 122, Mismatches: 25, Indels: 36
0.67 0.14 0.20
Matches are distributed among these distances:
2 19 0.16
3 84 0.69
4 19 0.16
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:74705565 original size:22 final size:22
Alignment explanation
Indices: 74705518--74705577 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 22
74705508 TATGTATACT
* **
74705518 ATTATATTTTATTA-CTATTATT
1 ATTATA-TTTATTATTTATTAGA
74705540 ATTATATTTATTATTTATTAGA
1 ATTATATTTATTATTTATTAGA
74705562 ATTAGTA-TTATT-TTTA
1 ATTA-TATTTATTATTTA
74705578 CTTAATACTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
21 11 0.33
22 20 0.61
23 2 0.06
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (22 bp):
ATTATATTTATTATTTATTAGA
Found at i:74705640 original size:29 final size:29
Alignment explanation
Indices: 74705567--74705665 Score: 85
Period size: 29 Copynumber: 3.3 Consensus size: 29
74705557 TTAGAATTAG
*
74705567 TATTATTTTTACTTAATACTTA-TATATAT
1 TATTATTTTT-CTTAATATTTATTATATAT
* * *
74705596 TATATAGTATTATTAATAGTTTATTAT-TAT
1 TAT-TATTTTTCTTAATA-TTTATTATATAT
*
74705626 TATTATTTTTCTTAATATTATATTATGTAT
1 TATTATTTTTCTTAATATT-TATTATATAT
*
74705656 ATATTCTTTT
1 -TATTATTTT
74705666 AATATATTAG
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
28 2 0.04
29 26 0.46
30 17 0.30
31 11 0.20
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (29 bp):
TATTATTTTTCTTAATATTTATTATATAT
Found at i:74705674 original size:53 final size:57
Alignment explanation
Indices: 74705562--74705674 Score: 137
Period size: 57 Copynumber: 2.0 Consensus size: 57
74705552 ATTTATTAGA
74705562 ATTAGTATTATTTTTACTTAATACTTATATATATTATATAGTATTATTAATAGTTTATT
1 ATTAGTATTATTTTTACTTAATACTTATATATATTATATAGTATTATTAATA--TTATT
* * *
74705621 ATTATTATTATTTTT-CTTAATA-TTATAT-TATGTATATATTCTT-TTAATA-TATT
1 ATTAGTATTATTTTTACTTAATACTTATATATAT-TATATAGTATTATTAATATTATT
74705674 A
1 A
74705675 GGTATATTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
53 5 0.10
56 9 0.18
57 15 0.30
58 7 0.14
59 14 0.28
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (57 bp):
ATTAGTATTATTTTTACTTAATACTTATATATATTATATAGTATTATTAATATTATT
Found at i:74705952 original size:23 final size:22
Alignment explanation
Indices: 74705926--74705977 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
74705916 TATATATATA
74705926 TATTTTACGTATATTATTAGTAT
1 TATTTTA-GTATATTATTAGTAT
* * *
74705949 TATTAATAGTTTATTATTATTAT
1 TATT-TTAGTATATTATTAGTAT
74705972 TATTTT
1 TATTTT
74705978 TCTTAATATT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
22 1 0.04
23 21 0.88
24 2 0.08
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.62
Consensus pattern (22 bp):
TATTTTAGTATATTATTAGTAT
Found at i:74705983 original size:29 final size:30
Alignment explanation
Indices: 74705937--74706008 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 30
74705927 ATTTTACGTA
* *
74705937 TATTATTAGTATTATTAATAGTT-TATTAT-
1 TATTATTATTTTTATTAATA-TTATATTATG
*
74705966 TATTATTATTTTTCTTAATATTATATTATG
1 TATTATTATTTTTATTAATATTATATTATG
*
74705996 TATATATTCTTTT
1 TAT-TATTATTTT
74706009 AATATATTAG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 2 0.06
29 23 0.64
30 3 0.08
31 8 0.22
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (30 bp):
TATTATTATTTTTATTAATATTATATTATG
Found at i:74706010 original size:27 final size:26
Alignment explanation
Indices: 74705963--74706013 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
74705953 AATAGTTTAT
*
74705963 TATTATTATTATTTTTCTTAATATTA
1 TATTATTATTATTCTTCTTAATATTA
74705989 TATTATGTATATATTCTT-TTAATAT
1 TATTAT-TAT-TATTCTTCTTAATAT
74706014 ATTAGGTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 6 0.27
27 10 0.45
28 6 0.27
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (26 bp):
TATTATTATTATTCTTCTTAATATTA
Found at i:74706255 original size:343 final size:344
Alignment explanation
Indices: 74705591--74706267 Score: 1331
Period size: 343 Copynumber: 2.0 Consensus size: 344
74705581 AATACTTATA
74705591 TATATTATATAGTATTATTAATAGTTTATTATTATTATTATTTTTCTTAATATTATATTATGTAT
1 TATATTATATAGTATTATTAATAGTTTATTATTATTATTATTTTTCTTAATATTATATTATGTAT
74705656 ATATTCTTTTAATATATTAGGTATATTTTATATTCTATATTACGTATATATATACATTTTTTATA
66 ATATTCTTTTAATATATTAGGTATATTTTATATTCTATATTACGTATATATATACATTTTTTATA
74705721 CTATATTATGTACACATTCTTAAATATTATTAGTATATATTTTTATATTATCATATTTATATATA
131 CTATATTATGTACACATTCTTAAATATTATTAGTATATATTTTTATATTATCATATTTATATATA
74705786 TGTCTAATGTTATATTACATATAGATTTTAAATGCTATATCAAGTACGTATATATTATATACAGT
196 TGTCTAATGTTATATTACATATAGATTTTAAATGCTATATCAAGTACGTATATATTATATACAGT
74705851 TTTTTCTTAAATATTATATTATATGTATTTAAATACTAATACTATGTATATATGTTTTCAATGTA
261 TTTTTCTTAAATATTATATTATATGTATTTAAATACTAATACTATGTATATATGTTTTCAATGTA
74705916 TATATATATATATTTTACG
326 TATATATATATATTTTACG
74705935 TATATTAT-TAGTATTATTAATAGTTTATTATTATTATTATTTTTCTTAATATTATATTATGTAT
1 TATATTATATAGTATTATTAATAGTTTATTATTATTATTATTTTTCTTAATATTATATTATGTAT
74705999 ATATTCTTTTAATATATTAGGTATATTTTATATTCTATATTACGTATATATATACATTTTTTATA
66 ATATTCTTTTAATATATTAGGTATATTTTATATTCTATATTACGTATATATATACATTTTTTATA
74706064 CTATATTATGTACACATTCTTAAATATTATTAGTTATATATTTTTATATTATCATATTTATATAT
131 CTATATTATGTACACATTCTTAAATATTATTAG-TATATATTTTTATATTATCATATTTATATAT
74706129 ATGTCTAATGTTATATTACATATAGATTTTAAATGCTATATCAAGTACGTATATATTATATACAG
195 ATGTCTAATGTTATATTACATATAGATTTTAAATGCTATATCAAGTACGTATATATTATATACAG
74706194 TTTTTTCTTAAATATTATATTATATGTATTTAAATACTAATACTATGTATATATG-TTTCAATGT
260 TTTTTTCTTAAATATTATATTATATGTATTTAAATACTAATACTATGTATATATGTTTTCAATGT
74706258 ATATATATAT
325 ATATATATAT
74706268 GTTTACGTAT
Statistics
Matches: 332, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
343 173 0.52
344 159 0.48
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (344 bp):
TATATTATATAGTATTATTAATAGTTTATTATTATTATTATTTTTCTTAATATTATATTATGTAT
ATATTCTTTTAATATATTAGGTATATTTTATATTCTATATTACGTATATATATACATTTTTTATA
CTATATTATGTACACATTCTTAAATATTATTAGTATATATTTTTATATTATCATATTTATATATA
TGTCTAATGTTATATTACATATAGATTTTAAATGCTATATCAAGTACGTATATATTATATACAGT
TTTTTCTTAAATATTATATTATATGTATTTAAATACTAATACTATGTATATATGTTTTCAATGTA
TATATATATATATTTTACG
Found at i:74706277 original size:18 final size:19
Alignment explanation
Indices: 74706241--74706282 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
74706231 TAATACTATG
*
74706241 TATATATGTTTCAATGTATA
1 TATATATGTTT-AACGTATA
74706261 TATATATGTTT-ACGTATA
1 TATATATGTTTAACGTATA
74706279 TATA
1 TATA
74706283 GCGTTACTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.48
20 11 0.52
ACGTcount: A:0.36, C:0.05, G:0.10, T:0.50
Consensus pattern (19 bp):
TATATATGTTTAACGTATA
Found at i:74706389 original size:27 final size:29
Alignment explanation
Indices: 74706345--74706399 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 29
74706335 TATACGTTCT
74706345 TATTATTACTATATCTATTATT-TATTAG
1 TATTATTACTATATCTATTATTGTATTAG
74706373 TATT-TTACTAT-TACTATTATTGTATTA
1 TATTATTACTATAT-CTATTATTGTATTA
74706400 TTTTTTAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 1 0.04
27 15 0.60
28 9 0.36
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (29 bp):
TATTATTACTATATCTATTATTGTATTAG
Found at i:74706464 original size:16 final size:14
Alignment explanation
Indices: 74706435--74706490 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
74706425 ATATTATGTT
74706435 TTTTTAATACTATA
1 TTTTTAATACTATA
*
74706449 TTTTTAATACCATA
1 TTTTTAATACTATA
* *
74706463 TATATT-AT-GTATA
1 T-TTTTAATACTATA
*
74706476 TTCTTAATACTATA
1 TTTTTAATACTATA
74706490 T
1 T
74706491 ATTGTATGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
12 3 0.09
13 6 0.18
14 21 0.64
15 3 0.09
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.54
Consensus pattern (14 bp):
TTTTTAATACTATA
Found at i:74706476 original size:27 final size:27
Alignment explanation
Indices: 74706445--74706511 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
74706435 TTTTTAATAC
74706445 TATATTTTTAATACCATATATAT-TATG
1 TATATTTTTAATACCATATAT-TGTATG
* *
74706472 TATATTCTTAATACTATATATTGTATG
1 TATATTTTTAATACCATATATTGTATG
*
74706499 TATTTTTTTAATA
1 TATATTTTTAATA
74706512 ATTGTATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.03
27 34 0.97
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (27 bp):
TATATTTTTAATACCATATATTGTATG
Found at i:74706567 original size:20 final size:20
Alignment explanation
Indices: 74706544--74706690 Score: 64
Period size: 22 Copynumber: 6.8 Consensus size: 20
74706534 TATGTACGTA
74706544 TTTTTAATATTATTATATAT
1 TTTTTAATATTATTATATAT
*
74706564 TTTTTAATATATATATGTGTATAT
1 TTTTT-A-ATAT-TAT-TATATAT
* *
74706588 TTATGTAGTATTATTA-ATAGTT
1 TT-TTTAATATTATTATATA--T
* *
74706610 GTTTTTAATATTATTATTTCTAA
1 -TTTTTAATATTATTA--TATAT
* * *
74706633 TATGTATATATCATGTATATA-
1 TTTTTA-ATATTAT-TATATAT
* *
74706654 TTTTTAATACTATGTATATAC
1 TTTTTAATATTAT-TATATAT
*
74706675 TTTTTAATACTATTAT
1 TTTTTAATATTATTAT
74706691 TATGTTTATA
Statistics
Matches: 97, Mismatches: 16, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
20 23 0.24
21 19 0.20
22 26 0.27
23 14 0.14
24 11 0.11
25 4 0.04
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.57
Consensus pattern (20 bp):
TTTTTAATATTATTATATAT
Found at i:74706679 original size:21 final size:20
Alignment explanation
Indices: 74706645--74706687 Score: 77
Period size: 21 Copynumber: 2.1 Consensus size: 20
74706635 TGTATATATC
74706645 ATGTATATATTTTTAATACT
1 ATGTATATATTTTTAATACT
74706665 ATGTATATACTTTTTAATACT
1 ATGTATATA-TTTTTAATACT
74706686 AT
1 AT
74706688 TATTATGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (20 bp):
ATGTATATATTTTTAATACT
Found at i:74707194 original size:26 final size:26
Alignment explanation
Indices: 74707157--74707265 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
74707147 TGATACAAAT
*
74707157 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74707183 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74707209 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74707234 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74707260 TGATAA
1 TGATAA
74707266 GAATATCATG
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 24 0.31
26 54 0.69
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74707222 original size:51 final size:52
Alignment explanation
Indices: 74707157--74707265 Score: 211
Period size: 51 Copynumber: 2.1 Consensus size: 52
74707147 TGATACAAAT
74707157 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
74707209 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
74707260 TGATAA
1 TGATAA
74707266 GAATATCATG
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 50 0.88
52 7 0.12
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:74708778 original size:25 final size:26
Alignment explanation
Indices: 74708750--74708801 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
74708740 TTTACAGTTT
74708750 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
74708775 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
74708801 T
1 T
74708802 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:74714223 original size:25 final size:26
Alignment explanation
Indices: 74714155--74714312 Score: 261
Period size: 26 Copynumber: 6.2 Consensus size: 26
74714145 TGATACAAAT
* *
74714155 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
74714181 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
74714207 TGATAAT-GGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
74714231 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
74714256 TGA-AATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
74714281 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
74714307 TGATAA
1 TGATAA
74714313 GAATTCATGT
Statistics
Matches: 125, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
24 27 0.22
25 39 0.31
26 59 0.47
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:74715822 original size:25 final size:26
Alignment explanation
Indices: 74715794--74715845 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
74715784 TTTACAGTTT
74715794 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
74715819 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
74715845 T
1 T
74715846 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:74719158 original size:22 final size:23
Alignment explanation
Indices: 74719132--74719185 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
74719122 TAAAATAAAA
*
74719132 TTAAAAAAT-TGAT-AAATA-TT
1 TTAAAAAATATAATAAAATATTT
74719152 TTATAAAAATATAATAAAATATTT
1 TTA-AAAAATATAATAAAATATTT
74719176 TTAAAAAATA
1 TTAAAAAATA
74719186 CGTGATAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 3 0.10
21 6 0.21
22 3 0.10
23 12 0.41
24 5 0.17
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (23 bp):
TTAAAAAATATAATAAAATATTT
Found at i:74719954 original size:29 final size:28
Alignment explanation
Indices: 74719915--74719986 Score: 76
Period size: 29 Copynumber: 2.6 Consensus size: 28
74719905 ATATTAAAAG
* *
74719915 ATAA-ATA-AAATATATTAATTTATTTTT
1 ATAATATATAAATATATT-ATTTATATAT
*
74719942 ATATTATATAAATATAATTATTTATATAT
1 ATAATATATAAATAT-ATTATTTATATAT
*
74719971 GTAATATATAAATATA
1 ATAATATATAAATATA
74719987 AAATAATATT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
27 3 0.08
28 4 0.11
29 27 0.73
30 3 0.08
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (28 bp):
ATAATATATAAATATATTATTTATATAT
Found at i:74720592 original size:6 final size:6
Alignment explanation
Indices: 74720581--74720607 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
74720571 TTGCCTCTTA
74720581 CCACTG CCACTG CCACTG CCACTG CCA
1 CCACTG CCACTG CCACTG CCACTG CCA
74720608 GAGATATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.52, G:0.15, T:0.15
Consensus pattern (6 bp):
CCACTG
Found at i:74722594 original size:26 final size:25
Alignment explanation
Indices: 74722555--74722603 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
74722545 ATAATTCGAT
*
74722555 TTAATTTAGTTTTTAAATTTTTATA
1 TTAATTTAGATTTTAAATTTTTATA
* *
74722580 TTAATTTTAGATTTTGAGTTTTTA
1 TTAA-TTTAGATTTTAAATTTTTA
74722604 AATTTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (25 bp):
TTAATTTAGATTTTAAATTTTTATA
Found at i:74722847 original size:15 final size:16
Alignment explanation
Indices: 74722827--74722869 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
74722817 GATAATTTTC
74722827 AATTAAATTAT-ATTA
1 AATTAAATTATAATTA
* *
74722842 AATTAAATTTTAATTC
1 AATTAAATTATAATTA
74722858 AATTCAAATTAT
1 AATT-AAATTAT
74722870 TATGATTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 10 0.43
16 7 0.30
17 6 0.26
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (16 bp):
AATTAAATTATAATTA
Found at i:74727013 original size:13 final size:13
Alignment explanation
Indices: 74726995--74727019 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74726985 AAATTAGGAC
74726995 TAAATATATTTTT
1 TAAATATATTTTT
74727008 TAAATATATTTT
1 TAAATATATTTT
74727020 AGAATTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAAATATATTTTT
Found at i:74727921 original size:15 final size:15
Alignment explanation
Indices: 74727903--74727949 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
74727893 AAATTATGGA
74727903 TTTAGTCTTTATATT
1 TTTAGTCTTTATATT
* *
74727918 TTTA-T-TTGATCAAT
1 TTTAGTCTTTAT-ATT
74727932 TTTAGTCTTTATATT
1 TTTAGTCTTTATATT
74727947 TTT
1 TTT
74727950 TAAATTGGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
13 4 0.16
14 7 0.28
15 10 0.40
16 4 0.16
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.66
Consensus pattern (15 bp):
TTTAGTCTTTATATT
Found at i:74740765 original size:24 final size:23
Alignment explanation
Indices: 74740738--74740792 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
74740728 AATAATTTGT
74740738 ATATTTTATAAAGTTATAACAAAA
1 ATATTTTATAAA-TTATAACAAAA
* * *
74740762 ATATATCTATAAATTATTATAAAA
1 ATAT-TTTATAAATTATAACAAAA
74740786 ATATTTT
1 ATATTTT
74740793 TTTTATAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 2 0.08
24 17 0.65
25 7 0.27
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.44
Consensus pattern (23 bp):
ATATTTTATAAATTATAACAAAA
Found at i:74742292 original size:91 final size:86
Alignment explanation
Indices: 74742107--74742343 Score: 323
Period size: 91 Copynumber: 2.7 Consensus size: 86
74742097 TGGGTATTTA
* * * * *
74742107 AACTTTCAAAATATATTAAAAATACTCTTAAACTTTTTTAAAAAAAGCAATTAAGTACTTTTTTT
1 AACTTTCAAAATACATCAAAAAGACCCTCAAACTTTTTTAAAAAAAGCAATTAAGTACTTTTTTT
74742172 TTGCACTCAATTGAGTACTTG
66 TTGCACTCAATTGAGTACTTG
* * *
74742193 AACTTTCAAAATGCATCAAAAAGGCCCTCAAACTTTTTTAGAAAAAGCAATTAAGCCCCTACTTT
1 AACTTTCAAAATACATCAAAAAGACCCTCAAACTTTTTTAAAAAAAGCAATTAAG----TAC-TT
74742258 TTTTTTTGCACTCAATT-AGGTACTTG
61 TTTTTTTGCACTCAATTGA-GTACTTG
* *
74742284 AACTTTCAAAATACATCAAAAAGACCCTCAAACTTTTTCAAAAAAAACAATTAAGTACTT
1 AACTTTCAAAATACATCAAAAAGACCCTCAAACTTTTTTAAAAAAAGCAATTAAGTACTT
74742344 GCTTTTATTA
Statistics
Matches: 132, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
86 49 0.37
87 3 0.02
90 4 0.03
91 76 0.58
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.35
Consensus pattern (86 bp):
AACTTTCAAAATACATCAAAAAGACCCTCAAACTTTTTTAAAAAAAGCAATTAAGTACTTTTTTT
TTGCACTCAATTGAGTACTTG
Found at i:74742768 original size:27 final size:28
Alignment explanation
Indices: 74742724--74742786 Score: 85
Period size: 27 Copynumber: 2.2 Consensus size: 28
74742714 TATGAGTCAT
74742724 TAATTTTTTTATGATTTT-TAAAAAATTTA
1 TAATTTTTTTAT-ATTTTATAAAAAA-TTA
*
74742753 TAATTTTTTTAT-TTTTATAAAAAATTC
1 TAATTTTTTTATATTTTATAAAAAATTA
74742780 TAATTTT
1 TAATTTT
74742787 AATAAATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 13 0.41
28 7 0.22
29 12 0.38
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (28 bp):
TAATTTTTTTATATTTTATAAAAAATTA
Found at i:74743072 original size:90 final size:89
Alignment explanation
Indices: 74742909--74743072 Score: 197
Period size: 88 Copynumber: 1.8 Consensus size: 89
74742899 TTTTGTGGGT
* * *
74742909 CTTTTTGATGCATTTTGAAAGTTCAAGTACGCAACTGAGTGAAAAAAAAAACAGGGGCTTAATTG
1 CTTTTTGATACA-TTTGAAAGTTCAAGTACGCAACTAAGTGAAAAAAAAAACAGGAGCTTAATTG
*
74742974 ATTTTTTTTGAAAAAATTTGAAGGC
65 ATTATTTTTGAAAAAATTTGAAGGC
* * ** *
74742999 CTTTTTGATACA-TTGAAAGTTCAAGTACTCAATTAAGTGCAACAAGAAAAAGGAGGAGTTTAAT
1 CTTTTTGATACATTTGAAAGTTCAAGTACGCAACTAAGTG-AA-AA-AAAAAACAGGAGCTTAAT
74743063 T-ATTATTTTT
63 TGATTATTTTT
74743073 TTTTAATTTA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
88 24 0.39
89 2 0.03
90 21 0.34
91 15 0.24
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (89 bp):
CTTTTTGATACATTTGAAAGTTCAAGTACGCAACTAAGTGAAAAAAAAAACAGGAGCTTAATTGA
TTATTTTTGAAAAAATTTGAAGGC
Found at i:74745852 original size:26 final size:28
Alignment explanation
Indices: 74745810--74745863 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
74745800 ACATTCTAAT
*
74745810 AAAAAATTAAATATTTTT-ATATTTTTA
1 AAAAAATTAAATATTTTTAAAATTTTTA
74745837 AAAAAATTAAAT-TTTTTAAAATTTTTA
1 AAAAAATTAAATATTTTTAAAATTTTTA
74745864 TTGACGTGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (28 bp):
AAAAAATTAAATATTTTTAAAATTTTTA
Found at i:74755092 original size:42 final size:42
Alignment explanation
Indices: 74755033--74755117 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
74755023 TGGTTGAAGA
74755033 ATCCAGCTCTACCTTTTACTTATTATAGAATTTATTTTGGCT
1 ATCCAGCTCTACCTTTTACTTATTATAGAATTTATTTTGGCT
*
74755075 ATCCAGCTCTACCTTTTATTTATTATAGAATTTATTTTGGCT
1 ATCCAGCTCTACCTTTTACTTATTATAGAATTTATTTTGGCT
74755117 A
1 A
74755118 AGTTATTACT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.25, C:0.18, G:0.09, T:0.48
Consensus pattern (42 bp):
ATCCAGCTCTACCTTTTACTTATTATAGAATTTATTTTGGCT
Found at i:74761308 original size:19 final size:16
Alignment explanation
Indices: 74761271--74761303 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
74761261 ATTTAAGATG
74761271 GCAACAAAATACAGTT
1 GCAACAAAATACAGTT
74761287 GCAACAAAATACAGTT
1 GCAACAAAATACAGTT
74761303 G
1 G
74761304 TTGCATGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.18, G:0.15, T:0.18
Consensus pattern (16 bp):
GCAACAAAATACAGTT
Done.