Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 26 of 292
Found at i:6732471 original size:33 final size:33
Alignment explanation
Indices: 6732425--6732489 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
6732415 CTAAGCTAAA
*
6732425 GTGGTTTCGTTTGTCCATCAACATTGGTGCATC
1 GTGGTTTCATTTGTCCATCAACATTGGTGCATC
*
6732458 GTGGTTTCATTTGTCCATCAGCATTGGTGCAT
1 GTGGTTTCATTTGTCCATCAACATTGGTGCAT
6732490 TGAATTTCCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.15, C:0.20, G:0.25, T:0.40
Consensus pattern (33 bp):
GTGGTTTCATTTGTCCATCAACATTGGTGCATC
Found at i:6742660 original size:19 final size:19
Alignment explanation
Indices: 6742609--6742651 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 19
6742599 ACTTTATTTT
*
6742609 TAAATATGTAA-AAA-AAA
1 TAAATAAGTAATAAAGAAA
6742626 TAAATAAGTAATAAAGAAA
1 TAAATAAGTAATAAAGAAA
6742645 TAAATAA
1 TAAATAA
6742652 TTTGTAAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.43
18 3 0.13
19 10 0.43
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (19 bp):
TAAATAAGTAATAAAGAAA
Found at i:6745519 original size:24 final size:21
Alignment explanation
Indices: 6745473--6745519 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
6745463 TTGATATGTT
6745473 AGTGAAGAGAAAATAAGAGAA
1 AGTGAAGAGAAAATAAGAGAA
*
6745494 AGTGATGAGAAATAGTATAGAGAA
1 AGTGAAGAGAAA-A-TA-AGAGAA
6745518 AG
1 AG
6745520 AACATAAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 11 0.50
22 1 0.05
23 2 0.09
24 8 0.36
ACGTcount: A:0.55, C:0.00, G:0.30, T:0.15
Consensus pattern (21 bp):
AGTGAAGAGAAAATAAGAGAA
Found at i:6752905 original size:3 final size:3
Alignment explanation
Indices: 6752892--6752946 Score: 101
Period size: 3 Copynumber: 18.0 Consensus size: 3
6752882 TTCCTCTCGA
6752892 TTC TCTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC T-TC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
6752938 TTC TTC TTC
1 TTC TTC TTC
6752947 CTTTCTTTTC
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 48 0.94
4 3 0.06
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:6753644 original size:28 final size:29
Alignment explanation
Indices: 6753612--6753669 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
6753602 ATAGCAATAC
*
6753612 AATTTAAAAAAAT-ATTTTAATAAATTTA
1 AATTTAAAAAAATAATCTTAATAAATTTA
** *
6753640 AATTTAGTAAAATAATCTTAATAATTTTA
1 AATTTAAAAAAATAATCTTAATAAATTTA
6753669 A
1 A
6753670 GAACTGAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (29 bp):
AATTTAAAAAAATAATCTTAATAAATTTA
Found at i:6755385 original size:18 final size:16
Alignment explanation
Indices: 6755362--6755404 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
6755352 TGTCATTATT
*
6755362 CTTATTTTTTTCTCGTTG
1 CTTATTTTTTTCT--TTA
*
6755380 CTTATTTATTTCTTTA
1 CTTATTTTTTTCTTTA
6755396 CTTATTTTT
1 CTTATTTTT
6755405 ATACCTTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 10 0.45
18 12 0.55
ACGTcount: A:0.12, C:0.14, G:0.05, T:0.70
Consensus pattern (16 bp):
CTTATTTTTTTCTTTA
Found at i:6755561 original size:3 final size:3
Alignment explanation
Indices: 6755548--6755693 Score: 106
Period size: 3 Copynumber: 48.7 Consensus size: 3
6755538 GCACTATTCT
*
6755548 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTTA TTA TT- TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * * *
6755592 CTT- TCTA TTA TTG TTA TTA TTA ATA -TA CTA TTA TTA TTC TTA TTAA
1 -TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
* * * *
6755638 CGTA TTA TTA TTA TTA CTA TTA TTA TTT TCTA CT- TTA TTA TTA -TA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
*
6755683 TTA TTA CTA TT
1 TTA TTA TTA TT
6755694 GCTATCATCA
Statistics
Matches: 113, Mismatches: 18, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
2 10 0.09
3 93 0.82
4 9 0.08
5 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:6755628 original size:20 final size:20
Alignment explanation
Indices: 6755600--6755653 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
6755590 TACTTTCTAT
*
6755600 TATTGTTATTATTAATATAC-
1 TATTATTATTATTAATA-ACG
* *
6755620 TATTATTATTCTTATTAACG
1 TATTATTATTATTAATAACG
6755640 TATTATTATTATTA
1 TATTATTATTATTA
6755654 CTATTATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 2 0.07
20 27 0.93
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (20 bp):
TATTATTATTATTAATAACG
Found at i:6755646 original size:23 final size:23
Alignment explanation
Indices: 6755554--6755659 Score: 83
Period size: 23 Copynumber: 4.7 Consensus size: 23
6755544 TTCTTTATTT
** *
6755554 TATTATTATTATTATTATTAT-T
1 TATTATTATTATTATTAACATAC
* * *
6755576 TATTATT-TTATCATT-ACTTTC
1 TATTATTATTATTATTAACATAC
* *
6755597 TATTATTGTTATTATTAATATAC
1 TATTATTATTATTATTAACATAC
* * *
6755620 TATTATTATTCTTATTAACGTAT
1 TATTATTATTATTATTAACATAC
*
6755643 TATTATTATTACTATTA
1 TATTATTATTATTATTA
6755660 TTATTTTCTA
Statistics
Matches: 65, Mismatches: 16, Indels: 5
0.76 0.19 0.06
Matches are distributed among these distances:
20 1 0.02
21 14 0.22
22 14 0.22
23 36 0.55
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (23 bp):
TATTATTATTATTATTAACATAC
Found at i:6756699 original size:35 final size:35
Alignment explanation
Indices: 6756660--6756729 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
6756650 GAGGGTGATG
6756660 CTTTAAATTTTTGAGTGTAT-TAAAAGTTTTTTTTA
1 CTTTAAATTTTTGAGTGT-TCTAAAAGTTTTTTTTA
*
6756695 CTTTAAATTTTTGGGTGTTCTAAAAGTTTTTTTTA
1 CTTTAAATTTTTGAGTGTTCTAAAAGTTTTTTTTA
6756730 AGGTTAAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
34 1 0.03
35 32 0.97
ACGTcount: A:0.26, C:0.04, G:0.13, T:0.57
Consensus pattern (35 bp):
CTTTAAATTTTTGAGTGTTCTAAAAGTTTTTTTTA
Found at i:6761138 original size:20 final size:21
Alignment explanation
Indices: 6761113--6761156 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
6761103 GAGGGATCAA
*
6761113 ATGCTGGAGTCCCAGAA-AAC
1 ATGCTGGAGTCACAGAACAAC
6761133 ATGCTGGAGTCACAGAACAAC
1 ATGCTGGAGTCACAGAACAAC
6761154 ATG
1 ATG
6761157 ATGAGCCAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (21 bp):
ATGCTGGAGTCACAGAACAAC
Found at i:6770048 original size:41 final size:41
Alignment explanation
Indices: 6769917--6770048 Score: 99
Period size: 41 Copynumber: 3.1 Consensus size: 41
6769907 TGGCTCTCCG
6769917 AGCAGTGGTGGAGCAGGTCGAAGACTCGCCTTAATCCCCTA
1 AGCAGTGGTGGAGCAGGTCGAAGACTCGCCTTAATCCCCTA
* * * * * *** * *
6769958 AGCAGTAGG-GTAACAGG-CTAAAATTTACAGATCCTGGCTCTCC-G
1 AGCAGT-GGTGGAGCAGGTCGAAGA-CT-C-G--CCTTAATCCCCTA
6770002 AGCAGTGGTGGAGCAGGTCGAAGACTCGCCTTAATCCCCTA
1 AGCAGTGGTGGAGCAGGTCGAAGACTCGCCTTAATCCCCTA
6770043 AGCAGT
1 AGCAGT
6770049 AGGGTAACAG
Statistics
Matches: 62, Mismatches: 20, Indels: 18
0.62 0.20 0.18
Matches are distributed among these distances:
40 11 0.18
41 19 0.31
42 4 0.06
43 4 0.06
44 13 0.21
45 11 0.18
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20
Consensus pattern (41 bp):
AGCAGTGGTGGAGCAGGTCGAAGACTCGCCTTAATCCCCTA
Found at i:6770187 original size:85 final size:85
Alignment explanation
Indices: 6768932--6770156 Score: 1663
Period size: 85 Copynumber: 14.5 Consensus size: 85
6768922 TCAGCAGGCT
* * **
6768932 TTAACTCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGTCGAACAGTGGTG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
* *
6768997 GAGCAGGTCGAAGAC-AGACT
66 GAGCAGGTCGAAGACTCG-CC
* * * * * *** * * * *
6769017 TTAACCCCCTAAGCAATAGGGTAACAAGAT-GAA-GTACAGATCTTATCTC-CCTAAGCAATAGT
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCC-GAGTAGTGGT
* ** *
6769079 GGAGCAGATTAAAGATACACGCC
65 GGAGCAGGTCGAAG--ACTCGCC
*
6769102 TTAACTCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
*
6769167 GAGCAGGTCGAAGACTTGCC
66 GAGCAGGTCGAAGACTCGCC
* * *
6769187 TTAACCCCCTAAGTAGTAAGGTAACAAGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
*
6769252 GAGCAGGTCGAAGACTTGCC
66 GAGCAGGTCGAAGACTCGCC
* * **
6769272 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACATATCTTGGCTTACCGAGTAGTGGTG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
6769337 GAGCAGGTCGAAGACTCGCC
66 GAGCAGGTCGAAGACTCGCC
*
6769357 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGTCGAGTAGTGGTG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
**
6769422 GAGCAGGTCGAAGACTCATC
66 GAGCAGGTCGAAGACTCGCC
*
6769442 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGCG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
*
6769507 GAGCAGGTCAAAGACTCGCC
66 GAGCAGGTCGAAGACTCGCC
* *
6769527 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCAAGCAGTGGTG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
*
6769592 GAGCAGGTCGAAGACTTGCC
66 GAGCAGGTCGAAGACTCGCC
*
6769612 TTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
6769677 GAGCAGGTCGAAGACTCGCC
66 GAGCAGGTCGAAGACTCGCC
* *
6769697 TTAACCCCTTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAATGGTG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
6769762 GAGCA----G--GACTTC-CC
66 GAGCAGGTCGAAGAC-TCGCC
* * * *
6769776 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTAGGCTCGCCGAATAGTAGCG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
*
6769841 GAGCAGGTCGAAGACTAGCC
66 GAGCAGGTCGAAGACTCGCC
* * ** * * * * *
6769861 TTATCTTCATTAAGCAAGAATGG-AGCAGGCTAAAATTTACAGATCCT-GGCTCTCCGAGCAGTG
1 TTAAC-CCCCTAAGC-AGTAGGGTAACAGGCTAAAATTTACAGAT-CTGGGCTCGCCGAGTAGTG
6769924 GTGGAGCAGGTCGAAGACTCGCC
63 GTGGAGCAGGTCGAAGACTCGCC
* * *
6769947 TTAATCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCCT-GGCTCTCCGAGCAGTGGT
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGAT-CTGGGCTCGCCGAGTAGTGGT
6770011 GGAGCAGGTCGAAGACTCGCC
65 GGAGCAGGTCGAAGACTCGCC
* * * *
6770032 TTAATCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTATAGATCCT-GGCTCTCCGAGCAGTGGT
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGAT-CTGGGCTCGCCGAGTAGTGGT
6770096 GGAGCAGGTCGAAGACTCGCC
65 GGAGCAGGTCGAAGACTCGCC
*
6770117 TTAATCCCCTAAGCAGTAGGGTAACAGGCTAAAA-TTACAG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAG
6770157 GTCTTAGCTT
Statistics
Matches: 1018, Mismatches: 103, Indels: 39
0.88 0.09 0.03
Matches are distributed among these distances:
79 69 0.07
80 2 0.00
81 1 0.00
82 1 0.00
83 30 0.03
84 13 0.01
85 799 0.78
86 65 0.06
87 36 0.04
88 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (85 bp):
TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGTAGTGGTG
GAGCAGGTCGAAGACTCGCC
Found at i:6771222 original size:22 final size:23
Alignment explanation
Indices: 6771197--6771255 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
6771187 CAACCAAATC
6771197 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
6771219 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
6771242 ACA-TCATCACATAT
1 A-ATTCAT-ACATAT
6771256 CTAAATCCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 6 0.19
23 18 0.58
24 7 0.23
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:6774015 original size:17 final size:17
Alignment explanation
Indices: 6773993--6774055 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
6773983 GAGGGTATGC
6773993 TTTAAATTTTTGAGTGT
1 TTTAAATTTTTGAGTGT
** *
6774010 TTTAAAAGTTTTT-TTTGC
1 TTT-AAA-TTTTTGAGTGT
*
6774028 TTTAAATTTTTGGGTGT
1 TTTAAATTTTTGAGTGT
*
6774045 TCTAAATTTTT
1 TTTAAATTTTT
6774056 TTTAAGGTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
16 5 0.14
17 18 0.50
18 8 0.22
19 5 0.14
ACGTcount: A:0.22, C:0.03, G:0.14, T:0.60
Consensus pattern (17 bp):
TTTAAATTTTTGAGTGT
Found at i:6774030 original size:35 final size:33
Alignment explanation
Indices: 6773990--6774058 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 33
6773980 AAGGAGGGTA
*
6773990 TGCTTTAAATTTTTGAGTGTTTTAAAAGTTTTTTT
1 TGCTTTAAATTTTTGAGTGTTCT-AAA-TTTTTTT
*
6774025 TGCTTTAAATTTTTGGGTGTTCTAAATTTTTTT
1 TGCTTTAAATTTTTGAGTGTTCTAAATTTTTTT
6774058 T
1 T
6774059 AAGGTTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 8 0.25
34 3 0.09
35 21 0.66
ACGTcount: A:0.20, C:0.04, G:0.14, T:0.61
Consensus pattern (33 bp):
TGCTTTAAATTTTTGAGTGTTCTAAATTTTTTT
Found at i:6782425 original size:7 final size:6
Alignment explanation
Indices: 6782394--6782423 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
6782384 TCTTATGTAT
6782394 AAAAATG AAAAAG AAAAAG AAAAAG AAAAA
1 AAAAA-G AAAAAG AAAAAG AAAAAG AAAAA
6782424 AGGACAAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.78
7 5 0.22
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:6787226 original size:2 final size:2
Alignment explanation
Indices: 6787219--6787252 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
6787209 TAATATAACA
6787219 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6787253 ATACAATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6788923 original size:9 final size:9
Alignment explanation
Indices: 6788909--6788934 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
6788899 ATGGCGATGA
6788909 GTTTAATTT
1 GTTTAATTT
6788918 GTTTAATTT
1 GTTTAATTT
6788927 GTTTAATT
1 GTTTAATT
6788935 CATCTATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (9 bp):
GTTTAATTT
Found at i:6789250 original size:11 final size:11
Alignment explanation
Indices: 6789230--6789283 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
6789220 TAGAATATAC
*
6789230 CCCATTCCTTG
1 CCCATACCTTG
6789241 CCCATACCTTG
1 CCCATACCTTG
*
6789252 CCCATACCTTT
1 CCCATACCTTG
*
6789263 CCCATACC-TA
1 CCCATACCTTG
6789273 CCCATACCTTG
1 CCCATACCTTG
6789284 GAAAGATCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:6789846 original size:18 final size:18
Alignment explanation
Indices: 6789817--6789891 Score: 105
Period size: 18 Copynumber: 4.2 Consensus size: 18
6789807 TACGACCATT
*
6789817 TACGGTACTATTCACGTA
1 TACGGCACTATTCACGTA
**
6789835 TTTGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
6789853 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
* *
6789871 TACGGTACTGTTCACGTA
1 TACGGCACTATTCACGTA
6789889 TAC
1 TAC
6789892 AGTAGTTGGG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.33
Consensus pattern (18 bp):
TACGGCACTATTCACGTA
Found at i:6793952 original size:11 final size:11
Alignment explanation
Indices: 6793932--6793974 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
6793922 TAGAATATAC
*
6793932 CCCATTCCTTG
1 CCCATACCTTG
*
6793943 CCCATACCTTT
1 CCCATACCTTG
*
6793954 CCCATACC-TA
1 CCCATACCTTG
6793964 CCCATACCTTG
1 CCCATACCTTG
6793975 GAAAGGTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.19, C:0.47, G:0.05, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:6795165 original size:35 final size:35
Alignment explanation
Indices: 6795118--6795210 Score: 125
Period size: 35 Copynumber: 2.7 Consensus size: 35
6795108 TAGAAAAAAA
*
6795118 ATTGCCTTAGACGTGTCTATCCCAACCTTTTAAAG
1 ATTGCCTTAGACGAGTCTATCCCAACCTTTTAAAG
* *
6795153 ATTGCCTCAGACGAGTTTATCCCAACCTTTTAAAG
1 ATTGCCTTAGACGAGTCTATCCCAACCTTTTAAAG
* * *
6795188 GTT-CCTTAGACGGGTCTACCCCA
1 ATTGCCTTAGACGAGTCTATCCCA
6795211 TTAAGGTTGG
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
34 16 0.32
35 34 0.68
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (35 bp):
ATTGCCTTAGACGAGTCTATCCCAACCTTTTAAAG
Found at i:6796607 original size:3 final size:3
Alignment explanation
Indices: 6796599--6796711 Score: 226
Period size: 3 Copynumber: 37.7 Consensus size: 3
6796589 CTTATAACGT
6796599 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
6796647 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
6796695 TAG TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TA
6796712 CGTTTCTATT
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 110 1.00
ACGTcount: A:0.34, C:0.00, G:0.33, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:6799472 original size:22 final size:22
Alignment explanation
Indices: 6799432--6799484 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
6799422 AAGCCGTGCA
* *
6799432 AGAGGTCAAACGCCTGTGTAAAG
1 AGAGG-CACACGCCCGTGTAAAG
* *
6799455 AGGGGCACACGCCCGTGTGAAG
1 AGAGGCACACGCCCGTGTAAAG
6799477 AGAGGCAC
1 AGAGGCAC
6799485 TTGGCCGTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.30, C:0.23, G:0.36, T:0.11
Consensus pattern (22 bp):
AGAGGCACACGCCCGTGTAAAG
Found at i:6799656 original size:21 final size:21
Alignment explanation
Indices: 6799617--6799656 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
6799607 TCTCATACGC
** *
6799617 CTGTGTGCCCATTAGACACGA
1 CTGTGTGCCCAAAACACACGA
6799638 CTGTGTGCCCAAAACACAC
1 CTGTGTGCCCAAAACACAC
6799657 ACCTATGTGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.33, G:0.20, T:0.20
Consensus pattern (21 bp):
CTGTGTGCCCAAAACACACGA
Found at i:6801826 original size:30 final size:28
Alignment explanation
Indices: 6801776--6801835 Score: 84
Period size: 30 Copynumber: 2.1 Consensus size: 28
6801766 CAAGTAGCCG
* *
6801776 AAGCTAGTTAAATGCACACTTAGTGTCA
1 AAGCTAGTTAAATACACACTTAGTGCCA
6801804 AAGCTAGTTTAAATCACACACTTAGTGCCA
1 AAGCTAG-TTAAAT-ACACACTTAGTGCCA
6801834 AA
1 AA
6801836 ACTTCCGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 7 0.25
29 6 0.21
30 15 0.54
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (28 bp):
AAGCTAGTTAAATACACACTTAGTGCCA
Found at i:6804643 original size:6 final size:6
Alignment explanation
Indices: 6804632--6804662 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
6804622 TCCTCCTTTT
6804632 TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC T
1 TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC T
6804663 CCTTTTATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTCTC
Found at i:6804701 original size:11 final size:11
Alignment explanation
Indices: 6804681--6804724 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
6804671 ACTAGCTATT
6804681 TATT-ATAAAA
1 TATTAATAAAA
6804691 TATTAATAAAA
1 TATTAATAAAA
*
6804702 TATCTTATTAAAA
1 TA--TTAATAAAA
6804715 TATTAATAAA
1 TATTAATAAA
6804725 GTAATATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
10 4 0.14
11 15 0.52
13 10 0.34
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (11 bp):
TATTAATAAAA
Found at i:6808153 original size:12 final size:13
Alignment explanation
Indices: 6808131--6808165 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
6808121 CAATTCAAAT
6808131 ATTATAATAAAAA
1 ATTATAATAAAAA
*
6808144 ATTA-AATAAATA
1 ATTATAATAAAAA
6808156 ATTATAATAA
1 ATTATAATAA
6808166 TTTTTTCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
ATTATAATAAAAA
Found at i:6812659 original size:18 final size:18
Alignment explanation
Indices: 6812636--6812673 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
6812626 AATACAACCA
6812636 TTCAAACCGGTTTCTTTC
1 TTCAAACCGGTTTCTTTC
6812654 TTCAAACCGGTTTCTTTC
1 TTCAAACCGGTTTCTTTC
6812672 TT
1 TT
6812674 TCTTTGCTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.26, G:0.11, T:0.47
Consensus pattern (18 bp):
TTCAAACCGGTTTCTTTC
Found at i:6812900 original size:18 final size:19
Alignment explanation
Indices: 6812850--6812901 Score: 52
Period size: 22 Copynumber: 2.6 Consensus size: 19
6812840 ACTCTTTTAC
*
6812850 AATATGTTCTTTCTTGTTTT
1 AATAT-TTCTTTCTTGTATT
6812870 ATGATATTGTCTTTC-TGTATT
1 A--ATATT-TCTTTCTTGTATT
6812891 AATATTTCTTT
1 AATATTTCTTT
6812902 TAATATTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
18 5 0.18
19 5 0.18
20 1 0.04
21 7 0.25
22 10 0.36
ACGTcount: A:0.19, C:0.10, G:0.10, T:0.62
Consensus pattern (19 bp):
AATATTTCTTTCTTGTATT
Found at i:6817829 original size:28 final size:28
Alignment explanation
Indices: 6817779--6817858 Score: 88
Period size: 28 Copynumber: 2.9 Consensus size: 28
6817769 TGCATCTTCG
* * *
6817779 ATATCTCGTACACTAACTACCATACTCA
1 ATATCTCGCACACTAAGTGCCATACTCA
* * *
6817807 ATATCTCGCACACCAAGTGCCATTCTTA
1 ATATCTCGCACACTAAGTGCCATACTCA
* *
6817835 ATATTTTGCACACTAAGTGCCATA
1 ATATCTCGCACACTAAGTGCCATA
6817859 TACATATATA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.33, C:0.29, G:0.09, T:0.30
Consensus pattern (28 bp):
ATATCTCGCACACTAAGTGCCATACTCA
Found at i:6822119 original size:2 final size:2
Alignment explanation
Indices: 6822112--6822153 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
6822102 TAACAATTTC
6822112 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6822154 GTACATTTCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6822598 original size:41 final size:41
Alignment explanation
Indices: 6822533--6822657 Score: 155
Period size: 41 Copynumber: 3.0 Consensus size: 41
6822523 ACATAAAATT
* * *
6822533 TGCTAGGC-ATAAAGCCTAGA-ATAATATATCGGTACAAAGCC
1 TGCTAGGCAAT-AAGCCT-GATATAATACACCGGCACAAAGCC
* *
6822574 TGCTAGGCAATAGGCCTGATATAATACACCGGCATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* *
6822615 TGCTAGGTAATAAGCCTGATATAATACACCGGCATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
6822656 TG
1 TG
6822658 ATACAATACA
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
40 2 0.03
41 71 0.95
42 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:6822654 original size:25 final size:25
Alignment explanation
Indices: 6822626--6822706 Score: 126
Period size: 25 Copynumber: 3.2 Consensus size: 25
6822616 GCTAGGTAAT
*
6822626 AAGCCTGATATAATACACCGGCATA
1 AAGCCTGATACAATACACCGGCATA
*
6822651 AAGCCTGATACAATACACCAGCATA
1 AAGCCTGATACAATACACCGGCATA
**
6822676 GGGCCTGATACAATACACCGGCATA
1 AAGCCTGATACAATACACCGGCATA
6822701 AAGCCT
1 AAGCCT
6822707 ACTAGGCAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.38, C:0.27, G:0.17, T:0.17
Consensus pattern (25 bp):
AAGCCTGATACAATACACCGGCATA
Found at i:6825828 original size:30 final size:28
Alignment explanation
Indices: 6825787--6825842 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
6825777 CACGGCCTGA
*
6825787 CACACGCCCATGTCTATGGCCCGTGTCCCT
1 CACACGCCCATGAC-AT-GCCCGTGTCCCT
*
6825817 CACACGGCCATGACATGCCCGTGTCC
1 CACACGCCCATGACATGCCCGTGTCC
6825843 TAGCCCGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.42
29 2 0.08
30 12 0.50
ACGTcount: A:0.16, C:0.43, G:0.21, T:0.20
Consensus pattern (28 bp):
CACACGCCCATGACATGCCCGTGTCCCT
Found at i:6826866 original size:47 final size:47
Alignment explanation
Indices: 6826797--6826961 Score: 167
Period size: 47 Copynumber: 3.5 Consensus size: 47
6826787 TAATGCCGAT
* *
6826797 GCCATGTCCCAAACATGATCTTACACTGGCTCATCCATCAAGTCAAC
1 GCCATGTCCCAGACATGATCTTACACTGGCTCATCCATCAAGTCGAC
* * * * *
6826844 GCCATGTTCCAGACATGGTCTTACACTGACT-ATCGA--AA-TCGAG
1 GCCATGTCCCAGACATGATCTTACACTGGCTCATCCATCAAGTCGAC
** *
6826887 GCCGGCGCTACCCAGACATGATCTTACACTGGCTCATCCATCAAGTTGAC
1 GCC-ATG-T-CCCAGACATGATCTTACACTGGCTCATCCATCAAGTCGAC
* *
6826937 GCCATGTTCCAGACATGGTCTTACA
1 GCCATGTCCCAGACATGATCTTACA
6826962 TTGACTATCG
Statistics
Matches: 92, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 6 0.07
44 3 0.03
45 1 0.01
46 25 0.27
47 47 0.51
48 1 0.01
49 3 0.03
50 6 0.07
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (47 bp):
GCCATGTCCCAGACATGATCTTACACTGGCTCATCCATCAAGTCGAC
Found at i:6826968 original size:93 final size:94
Alignment explanation
Indices: 6826803--6827017 Score: 351
Period size: 93 Copynumber: 2.3 Consensus size: 94
6826793 CGATGCCATG
*
6826803 TCCCAAACATGATCTTACACTGGCTCATCCATCAAGTCAACGCCATGTTCCAGACATGGTCTTAC
1 TCCCAGACATGATCTTACACTGGCTCATCCATCAAGTCAACGCCATGTTCCAGACATGGTCTTAC
6826868 ACTGACTATCGAAATCGAGGCCGGCGCTA
66 ACTGACTATCGAAATCGAGGCCGGCGCTA
**
6826897 -CCCAGACATGATCTTACACTGGCTCATCCATCAAGTTGACGCCATGTTCCAGACATGGTCTTAC
1 TCCCAGACATGATCTTACACTGGCTCATCCATCAAGTCAACGCCATGTTCCAGACATGGTCTTAC
*
6826961 ATTGACTATCGAAATCGAGGCCGGCGCTA
66 ACTGACTATCGAAATCGAGGCCGGCGCTA
* *
6826990 TGTCCCAGACATGGTCTTACACTAGCTC
1 --TCCCAGACATGATCTTACACTGGCTC
6827018 TTTCATATTC
Statistics
Matches: 112, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
93 89 0.79
96 23 0.21
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (94 bp):
TCCCAGACATGATCTTACACTGGCTCATCCATCAAGTCAACGCCATGTTCCAGACATGGTCTTAC
ACTGACTATCGAAATCGAGGCCGGCGCTA
Found at i:6827000 original size:49 final size:49
Alignment explanation
Indices: 6826847--6827012 Score: 182
Period size: 49 Copynumber: 3.5 Consensus size: 49
6826837 AGTCAACGCC
*
6826847 ATGTTCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGGCGCT
1 ATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGGCGCT
* * * * ** * *
6826896 A---CCCAGACATGATCTTACACTGGCTCATC--CATC-AAGTTGACGCC
1 ATGTCCCAGACATGGTCTTACACTGACT-ATCGAAATCGAGGCCGGCGCT
* *
6826940 ATGTTCCAGACATGGTCTTACATTGACTATCGAAATCGAGGCCGGCGCT
1 ATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGGCGCT
6826989 ATGTCCCAGACATGGTCTTACACT
1 ATGTCCCAGACATGGTCTTACACT
6827013 AGCTCTTTCA
Statistics
Matches: 89, Mismatches: 21, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
44 7 0.08
45 3 0.03
46 24 0.27
47 23 0.26
48 3 0.03
49 29 0.33
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (49 bp):
ATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGGCGCT
Found at i:6827106 original size:48 final size:50
Alignment explanation
Indices: 6826991--6827120 Score: 140
Period size: 48 Copynumber: 2.6 Consensus size: 50
6826981 CCGGCGCTAT
* * * *
6826991 GTCCCAGACATGGTCTTACACT-AGCTCTTTCATATTCATACCGATGCCAT
1 GTCCCAGACATGGTCTTACACTGA-CACTCTCATATACATACCGATGCCAC
* ** * *
6827041 GTCCCAGGCATTATCTTACACTGACAC-CTC-TATACGTGCCGATGCCAC
1 GTCCCAGACATGGTCTTACACTGACACTCTCATATACATACCGATGCCAC
6827089 GTCCCAGACATGGTCTTACACTGACACGTCTC
1 GTCCCAGACATGGTCTTACACTGACAC-TCTC
6827121 GTAGCTGATG
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
48 38 0.58
49 2 0.03
50 24 0.37
51 1 0.02
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (50 bp):
GTCCCAGACATGGTCTTACACTGACACTCTCATATACATACCGATGCCAC
Found at i:6827268 original size:48 final size:48
Alignment explanation
Indices: 6826790--6827294 Score: 208
Period size: 46 Copynumber: 10.7 Consensus size: 48
6826780 TAGGGTATAA
* *
6826790 TGCCGATGCCATGTCCCAAACATGATCTTACACTGGCTCATCCATCAA--G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AATCG
* * * * *
6826839 T--CAACGCCATGTTCCAGACATGGTCTTACACTGACTATCGA-AATCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATAATCG
* * *
6826885 AGGCCG--GCGC-T-ACCCAGACATGATCTTACACTGGCTCATCCATCAA--G
1 -TGCCGATGC-CATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AATCG
* * * * * *
6826932 T--TGACGCCATGTTCCAGACATGGTCTTACATTGACTATCGA-AATCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATAATCG
* ** * * * *
6826978 AGGCCGGCGCTATGTCCCAGACATGGTCTTACACTAGCTCTTTCATATTCA
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC--TCATAATCG
* * ** * *
6827029 TACCGATGCCATGTCCCAGGCATTATCTTACACTGACACCTC-T-ATACG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATAAT-CG
* * *
6827077 TGCCGATGCCACGTCCCAGACATGGTCTTACACTGACACGTC----TCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATCG
* * *
6827122 TAGCTGATG-CATGTCCCTA-ACAT-GTCTTACACAGGCT-TACAT-CTCG
1 T-GCCGATGCCATGTCCC-AGACATGGTCTTACACTGGCTCT-CATAATCG
* ** * * *
6827168 AGGTTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCAA
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATC-G
*
6827215 AGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCG
*
6827262 TGGCCGATG-CATGTCCCAAACAT-GTCTTACACT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
6827295 AGCACACAAA
Statistics
Matches: 345, Mismatches: 70, Indels: 85
0.69 0.14 0.17
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 16 0.05
45 18 0.05
46 92 0.27
47 85 0.25
48 63 0.18
49 35 0.10
50 28 0.08
51 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCG
Found at i:6831099 original size:18 final size:18
Alignment explanation
Indices: 6831076--6831113 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
6831066 CTATTGTGAG
6831076 AAATGTTTAGGACCAATT
1 AAATGTTTAGGACCAATT
6831094 AAATGTTTAGGACCAATT
1 AAATGTTTAGGACCAATT
6831112 AA
1 AA
6831114 TTCAGTTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (18 bp):
AAATGTTTAGGACCAATT
Found at i:6832638 original size:44 final size:44
Alignment explanation
Indices: 6832575--6832662 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
6832565 ATGAAATAAA
6832575 GCTCTCATATGCATCTAGATGACATGAGTTAAAATCGTGTCATC
1 GCTCTCATATGCATCTAGATGACATGAGTTAAAATCGTGTCATC
6832619 GCTCTCATA-GACATCTAGATGACATGAGTTAAAATCGTGTCATC
1 GCTCTCATATG-CATCTAGATGACATGAGTTAAAATCGTGTCATC
6832663 TCACCTATTT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
43 1 0.02
44 42 0.98
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (44 bp):
GCTCTCATATGCATCTAGATGACATGAGTTAAAATCGTGTCATC
Found at i:6837282 original size:2 final size:2
Alignment explanation
Indices: 6837275--6837323 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
6837265 TTGAAAGGAA
*
6837275 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
6837317 AT GT AT A
1 AT AT AT A
6837324 AATTGGTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6837804 original size:24 final size:24
Alignment explanation
Indices: 6837775--6837830 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
6837765 TAATGTAAAG
*
6837775 TAAATAATATAAAATA-ATTCGAAAA
1 TAAATAATACAAAATAGA-TC-AAAA
6837800 T-AATAATACAAAATAGATCAAAA
1 TAAATAATACAAAATAGATCAAAA
6837823 TAAATAAT
1 TAAATAAT
6837831 GTGATAAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 5 0.18
24 21 0.75
25 2 0.07
ACGTcount: A:0.64, C:0.05, G:0.04, T:0.27
Consensus pattern (24 bp):
TAAATAATACAAAATAGATCAAAA
Found at i:6841511 original size:2 final size:2
Alignment explanation
Indices: 6841504--6841540 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
6841494 TATTAATTAC
6841504 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6841541 TGTAGACATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6846262 original size:5 final size:6
Alignment explanation
Indices: 6846246--6846276 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
6846236 TTAAATCTGC
6846246 TAAAAA TAAAAA TAAAAA TAAAAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA T-AAAAA TAAAAA
6846277 GTAGTTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
TAAAAA
Found at i:6846263 original size:12 final size:13
Alignment explanation
Indices: 6846246--6846276 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6846236 TTAAATCTGC
6846246 TAAAAAT-AAAAA
1 TAAAAATAAAAAA
6846258 TAAAAATAAAAAA
1 TAAAAATAAAAAA
6846271 TAAAAA
1 TAAAAA
6846277 GTAGTTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:6859870 original size:46 final size:46
Alignment explanation
Indices: 6859817--6859992 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
6859807 TATTTGGGCA
6859817 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
6859863 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
6859910 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
6859956 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
6859993 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:6859972 original size:93 final size:93
Alignment explanation
Indices: 6859813--6859984 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
6859803 GGGATATTTG
* *
6859813 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
6859878 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
6859906 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
6859971 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
6859985 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:6863399 original size:18 final size:18
Alignment explanation
Indices: 6863347--6863412 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
6863337 TTTTCTATTT
*
6863347 TTTATATTTTTTA-AATA
1 TTTAAATTTTTTATAATA
** *
6863364 TTTCACAATTCCTAATAATA
1 TTT-A-AATTTTTTATAATA
*
6863384 TTTAAATTTTTTATAATT
1 TTTAAATTTTTTATAATA
6863402 TTTAATATTTT
1 TTTAA-ATTTT
6863413 CTAATACTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
17 3 0.08
18 16 0.43
19 11 0.30
20 7 0.19
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTAAATTTTTTATAATA
Found at i:6863554 original size:19 final size:19
Alignment explanation
Indices: 6863530--6863574 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
6863520 ATATTTCAAA
6863530 AATTTTAGT-AATT-TTTAAT
1 AATTTTA-TAAATTATTT-AT
6863549 AATTTTATAAATTATTTAT
1 AATTTTATAAATTATTTAT
6863568 AATTTTA
1 AATTTTA
6863575 CATTTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.04
19 20 0.83
20 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
AATTTTATAAATTATTTAT
Found at i:6870418 original size:28 final size:28
Alignment explanation
Indices: 6870348--6870403 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
6870338 TTACCTGTTT
6870348 AATCGACAGTGAATTAAGAGATGCCACA
1 AATCGACAGTGAATTAAGAGATGCCACA
6870376 AATCGACAGTGAATTAAGAGATGCCACA
1 AATCGACAGTGAATTAAGAGATGCCACA
6870404 GATCTAGGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (28 bp):
AATCGACAGTGAATTAAGAGATGCCACA
Found at i:6874859 original size:12 final size:12
Alignment explanation
Indices: 6874838--6874871 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
6874828 TCACTCTGAC
*
6874838 TATTACCATAAG
1 TATTATCATAAG
6874850 TATTATCATAAG
1 TATTATCATAAG
*
6874862 TACTATCATA
1 TATTATCATA
6874872 GGTGCTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (12 bp):
TATTATCATAAG
Found at i:6876892 original size:18 final size:19
Alignment explanation
Indices: 6876856--6876892 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
6876846 TATGACAACG
6876856 AATGATATGAATGTATATA
1 AATGATATGAATGTATATA
6876875 AATGA-ATGATATGT-TATA
1 AATGATATGA-ATGTATATA
6876893 GACGCTCGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (19 bp):
AATGATATGAATGTATATA
Found at i:6878771 original size:21 final size:21
Alignment explanation
Indices: 6878747--6878799 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
6878737 TTGAATTGAT
6878747 TCGAGTGAAATGAAATTCGAA
1 TCGAGTGAAATGAAATTCGAA
6878768 TCGAGTGAAATGAAATTCGAA
1 TCGAGTGAAATGAAATTCGAA
6878789 TCGAGTGAAAT
1 TCGAGTGAAAT
6878800 TGTTAGAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.42, C:0.09, G:0.25, T:0.25
Consensus pattern (21 bp):
TCGAGTGAAATGAAATTCGAA
Found at i:6879008 original size:12 final size:12
Alignment explanation
Indices: 6878985--6879019 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
6878975 GAAATTATTA
*
6878985 TTTTAGAATTTT
1 TTTTAAAATTTT
6878997 TTTT-AAATTTT
1 TTTTAAAATTTT
6879008 TTTTAAAATTTT
1 TTTTAAAATTTT
6879020 ACTTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (12 bp):
TTTTAAAATTTT
Found at i:6879085 original size:18 final size:20
Alignment explanation
Indices: 6879064--6879105 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6879054 TTTTTTTAAA
6879064 AATTTTA-AAAATA-TTTTG
1 AATTTTAGAAAATATTTTTG
*
6879082 AATTTTAGAAATTATTTTTG
1 AATTTTAGAAAATATTTTTG
6879102 AATT
1 AATT
6879106 ATTTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.33
19 5 0.24
20 9 0.43
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.52
Consensus pattern (20 bp):
AATTTTAGAAAATATTTTTG
Found at i:6879962 original size:29 final size:29
Alignment explanation
Indices: 6879920--6879981 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
6879910 TGAACAGGTT
6879920 GTGTGTCTCACACGGCATTAGACACACCC
1 GTGTGTCTCACACGGCATTAGACACACCC
* *
6879949 GTGTGTCTCACACGGTATTAGACACGCCC
1 GTGTGTCTCACACGGCATTAGACACACCC
6879978 GTGT
1 GTGT
6879982 ATCTAAGCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.24
Consensus pattern (29 bp):
GTGTGTCTCACACGGCATTAGACACACCC
Found at i:6881172 original size:40 final size:41
Alignment explanation
Indices: 6881076--6881174 Score: 119
Period size: 41 Copynumber: 2.4 Consensus size: 41
6881066 GGATCGATCC
* *
6881076 CGCACACTTAGTGCCATCTCAAATAACCTAAGCTATCTCAGTAT
1 CGCACACTTAGTG-C--CTCAAATAACCGAAGCTATCTCAGAAT
* * *
6881120 CGCACACTTAGTGCCTCATATAGCCGAAGCTATTTCA-AAT
1 CGCACACTTAGTGCCTCAAATAACCGAAGCTATCTCAGAAT
6881160 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
6881175 GAACATAGTC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
40 17 0.34
41 19 0.38
43 1 0.02
44 13 0.26
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.26
Consensus pattern (41 bp):
CGCACACTTAGTGCCTCAAATAACCGAAGCTATCTCAGAAT
Found at i:6884018 original size:20 final size:20
Alignment explanation
Indices: 6883995--6884034 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
6883985 TCAAATAGAA
6883995 GTAATGCAGTAGATGAAAAC
1 GTAATGCAGTAGATGAAAAC
6884015 GTAATGCAGTAGATGAAAAC
1 GTAATGCAGTAGATGAAAAC
6884035 ATCTTATTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.25, T:0.20
Consensus pattern (20 bp):
GTAATGCAGTAGATGAAAAC
Found at i:6891951 original size:36 final size:37
Alignment explanation
Indices: 6891900--6891975 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 37
6891890 TGGCATCATT
*
6891900 ATGAGACTTCATGTAAGACCATATCTGGGATA-TGGC
1 ATGAGACTTCATGTAAGACCATAGCTGGGATATTGGC
* * *
6891936 ATGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
1 ATGAGACTTCATGTAAGACCATAGCTGGGATATTGGC
6891973 ATG
1 ATG
6891976 GAAACGAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
36 28 0.80
37 7 0.20
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (37 bp):
ATGAGACTTCATGTAAGACCATAGCTGGGATATTGGC
Found at i:6898504 original size:13 final size:13
Alignment explanation
Indices: 6898459--6898505 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 13
6898449 TTAATGAGTT
6898459 TTTATTTTATAT-
1 TTTATTTTATATA
*
6898471 TTTA-TATATATA
1 TTTATTTTATATA
6898483 TTTGAATTTTATATA
1 TTT--ATTTTATATA
6898498 TTTATTTT
1 TTTATTTT
6898506 TTTAAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
11 6 0.21
12 7 0.24
13 5 0.17
14 1 0.03
15 10 0.34
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (13 bp):
TTTATTTTATATA
Found at i:6899591 original size:26 final size:26
Alignment explanation
Indices: 6899555--6899690 Score: 229
Period size: 26 Copynumber: 5.2 Consensus size: 26
6899545 TGATACAAAT
*
6899555 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATGGGTTAGGTAAATGTTTC-A
* *
6899581 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6899607 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6899633 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6899659 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6899685 TGATAA
1 TGATAA
6899691 GAATTTCATG
Statistics
Matches: 106, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
26 104 0.98
27 2 0.02
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:6901161 original size:27 final size:26
Alignment explanation
Indices: 6901120--6901194 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 26
6901110 TAAAATAGCT
* * *
6901120 AAATTACTATAATACCCCTATGTATGA
1 AAATTACTGTTATACCCCTAGGTAT-A
*
6901147 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGGTATA
*
6901173 AAATTACCGTTATACCCCTAGG
1 AAATTACTGTTATACCCCTAGG
6901195 GTTAATTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 22 0.51
27 21 0.49
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGGTATA
Found at i:6901375 original size:27 final size:27
Alignment explanation
Indices: 6901297--6901435 Score: 176
Period size: 27 Copynumber: 5.2 Consensus size: 27
6901287 GAGGAAGCGT
* *
6901297 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACATATATCTGA
*
6901324 TCTGGTGGCTCTG-CACAAATATCTGA
1 TCTGGTGGCTCTGCCACATATATCTGA
*
6901350 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACATATATCTGA
6901377 TCTGGTGGCTCTGCCACGAT-TATCTGTA
1 TCTGGTGGCTCTGCCAC-ATATATCTG-A
* * *
6901405 TCTGGTGACTCTGTCACAT-TATCTGT
1 TCTGGTGGCTCTGCCACATATATCTGA
6901431 TCTGG
1 TCTGG
6901436 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
26 31 0.30
27 54 0.53
28 17 0.17
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACATATATCTGA
Found at i:6901381 original size:53 final size:55
Alignment explanation
Indices: 6901297--6901435 Score: 194
Period size: 53 Copynumber: 2.6 Consensus size: 55
6901287 GAGGAAGCGT
* * *
6901297 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTG-CACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
6901350 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
6901405 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
6901436 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 37 0.48
54 22 0.29
55 18 0.23
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:6904591 original size:54 final size:54
Alignment explanation
Indices: 6904532--6904646 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
6904522 AGCATGGCTG
*
6904532 CCAGAACAGATA-ATGTGACAGAGTCACCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAAT-CAGATAATCGTGGCAGAGCCA
* * * * * *
6904586 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTTGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCGTGGCAGAGCCA
6904640 CCAGAAC
1 CCAGAAC
6904647 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 36 0.68
55 17 0.32
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCGTGGCAGAGCCA
Found at i:6904594 original size:27 final size:26
Alignment explanation
Indices: 6904532--6904646 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
6904522 AGCATGGCTG
* *
6904532 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
6904558 CCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
6904586 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
6904613 CCAGATCAGATATTTGTTGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
6904640 CCAGAAC
1 CCAGAAC
6904647 GCTTCCTCCA
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 4 0.05
27 57 0.74
28 16 0.21
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:6906280 original size:25 final size:25
Alignment explanation
Indices: 6906240--6906321 Score: 137
Period size: 25 Copynumber: 3.2 Consensus size: 25
6906230 ACATGAATTC
* *
6906240 TTATCATTAAACATTTACCTAACCCA
1 TTATCA-TGAACATTTACCTAACCTA
6906266 TTATCATGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCTA
6906291 TTATCATGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCTA
6906316 TTATCA
1 TTATCA
6906322 ATTTATATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
25 48 0.89
26 6 0.11
ACGTcount: A:0.37, C:0.24, G:0.02, T:0.37
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCTA
Found at i:6912462 original size:50 final size:52
Alignment explanation
Indices: 6912408--6912515 Score: 184
Period size: 50 Copynumber: 2.1 Consensus size: 52
6912398 TGATACAAAT
6912408 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
* *
6912458 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
6912510 TGATAA
1 TGATAA
6912516 GAATTTCATG
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
50 31 0.57
51 13 0.24
52 10 0.19
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:6912490 original size:26 final size:26
Alignment explanation
Indices: 6912408--6912515 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
6912398 TGATACAAAT
* *
6912408 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6912434 TGATAAT-GGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6912458 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6912484 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6912510 TGATAA
1 TGATAA
6912516 GAATTTCATG
Statistics
Matches: 79, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
24 10 0.13
25 26 0.33
26 43 0.54
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:6914162 original size:27 final size:27
Alignment explanation
Indices: 6914121--6914247 Score: 173
Period size: 27 Copynumber: 4.7 Consensus size: 27
6914111 GAGGAAGCGT
*
6914121 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
6914148 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
6914175 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
6914202 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * *
6914230 TCTAGTGACTCTGTCACA
1 TCTGGTGGCTCTGCCACA
6914248 TTACTGTTCT
Statistics
Matches: 88, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 74 0.84
28 14 0.16
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:6917402 original size:27 final size:26
Alignment explanation
Indices: 6917365--6917479 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
6917355 AGCATGGCTG
* *
6917365 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
6917391 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
6917419 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
6917446 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
6917473 CCAGAAC
1 CCAGAAC
6917480 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:6917429 original size:54 final size:54
Alignment explanation
Indices: 6917365--6917479 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
6917355 AGCATGGCTG
*
6917365 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
6917419 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
6917473 CCAGAAC
1 CCAGAAC
6917480 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:6919120 original size:26 final size:26
Alignment explanation
Indices: 6919084--6919194 Score: 170
Period size: 26 Copynumber: 4.2 Consensus size: 26
6919074 CATGGAATTC
6919084 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
6919110 TTATCATGAAACATTTACCTTAACCCA
1 TTATCATGAAACATTTACC-TAACCCA
* *
6919137 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
6919163 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
6919189 TTATCA
1 TTATCA
6919195 ATTTATATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
26 54 0.67
27 27 0.33
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:6919150 original size:53 final size:52
Alignment explanation
Indices: 6919084--6919194 Score: 170
Period size: 53 Copynumber: 2.1 Consensus size: 52
6919074 CATGGAATTC
6919084 TTATCATGAAACATTTACCTAACCCATTATCA-TGAAACATTTACCTTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATTG-AACATTTACC-TAACCCA
* * *
6919137 TTATCATGGAACATTTACCTAACCTATTATCATTGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCATTATCATTGAACATTTACCTAACCCA
6919189 TTATCA
1 TTATCA
6919195 ATTTATATCA
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
52 12 0.22
53 40 0.74
54 2 0.04
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATTATCATTGAACATTTACCTAACCCA
Found at i:6925387 original size:26 final size:26
Alignment explanation
Indices: 6925325--6925433 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
6925315 TGATACAAAT
6925325 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
6925350 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
6925376 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
6925402 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
6925428 TGATAA
1 TGATAA
6925434 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 21 0.26
26 59 0.74
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:6926926 original size:25 final size:25
Alignment explanation
Indices: 6926868--6926941 Score: 94
Period size: 25 Copynumber: 2.9 Consensus size: 25
6926858 AAAAGTAGCT
* *
6926868 AAATTACTATAATACCCCTATGTATGA
1 AAATTACTATTATACCCCTA-G-GTGA
6926895 AAATTACTATTATACCCCTAGGTGA
1 AAATTACTATTATACCCCTAGGTGA
**
6926920 AAATTACCGTTATACCCCTAGG
1 AAATTACTATTATACCCCTAGG
6926942 GTTAATTTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
25 23 0.53
26 1 0.02
27 19 0.44
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (25 bp):
AAATTACTATTATACCCCTAGGTGA
Found at i:6927085 original size:27 final size:27
Alignment explanation
Indices: 6927044--6927183 Score: 176
Period size: 27 Copynumber: 5.2 Consensus size: 27
6927034 GAGGAAGCGT
*
6927044 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
6927071 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
6927098 TCTGGTGGCTCTGCCACATATATCT-A
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
6927124 TTCTGGTGGCTCTGCCACGATTATCTGTA
1 -TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
6927153 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
6927179 TCTGG
1 TCTGG
6927184 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
26 6 0.06
27 80 0.78
28 15 0.15
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:6928582 original size:17 final size:17
Alignment explanation
Indices: 6928560--6928596 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
6928550 TAAGAAAGAA
6928560 TAATTAAAAATTTTAAT
1 TAATTAAAAATTTTAAT
*
6928577 TAATTAAAATTTTTAAT
1 TAATTAAAAATTTTAAT
6928594 TAA
1 TAA
6928597 AAATCCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATTAAAAATTTTAAT
Found at i:6931274 original size:117 final size:120
Alignment explanation
Indices: 6931038--6931292 Score: 371
Period size: 117 Copynumber: 2.1 Consensus size: 120
6931028 TTATTAAATT
*
6931038 TTAATA-AGATTATTATT-AAATATAATTTAATAAAAATAAAAAGTAAACAATTTAATCATATTT
1 TTAATATA-ATTATTATTAAAATATAATTTAATAAAAATAAAAAGTAAACAATTTAATCATAGTT
* *
6931101 TAACATAATTATTATTAAATACAATTTAATAAAATGATATATAATTTGAAATCATTA
65 TAACATAA-TATTATTAAATACAATTTAATAAAATAATATATAATTTGAAAACATTA
* * *
6931158 TTAATATAATTATTATTAAAATATGAA-TTAATAAAAATCATAA-TAAATAATTTAATCATAGTT
1 TTAATATAATTATTATTAAAATAT-AATTTAATAAAAATAAAAAGTAAACAATTTAATCATAGTT
6931221 TAACAT-A-ATTATTAAATACAATTTAATAAAATAATATATAATTT-AATAACATTA
65 TAACATAATATTATTAAATACAATTTAATAAAATAATATATAATTTGAA-AACATTA
6931275 TTAATATAATTATTATTA
1 TTAATATAATTATTATTA
6931293 TTTTAGGTAT
Statistics
Matches: 125, Mismatches: 6, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
116 2 0.02
117 60 0.48
119 1 0.01
120 39 0.31
121 21 0.17
122 2 0.02
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (120 bp):
TTAATATAATTATTATTAAAATATAATTTAATAAAAATAAAAAGTAAACAATTTAATCATAGTTT
AACATAATATTATTAAATACAATTTAATAAAATAATATATAATTTGAAAACATTA
Found at i:6935446 original size:28 final size:28
Alignment explanation
Indices: 6935406--6935461 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
6935396 ATTTGAAAGA
6935406 ATGGGCTCACCTTCTTACTCTAATCCAT
1 ATGGGCTCACCTTCTTACTCTAATCCAT
6935434 ATGGGCTCACCTTCTTACTCTAATCCAT
1 ATGGGCTCACCTTCTTACTCTAATCCAT
6935462 GAAAACCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.32, G:0.11, T:0.36
Consensus pattern (28 bp):
ATGGGCTCACCTTCTTACTCTAATCCAT
Found at i:6939226 original size:5 final size:5
Alignment explanation
Indices: 6939216--6939324 Score: 65
Period size: 5 Copynumber: 22.8 Consensus size: 5
6939206 TATAGTGCAT
* *
6939216 AATAA AATAA AATAA AATAA AA-ACA AA-AA AGTAA AAGTAA AA-AA CA-AA
1 AATAA AATAA AATAA AATAA AATA-A AATAA AATAA AA-TAA AATAA AATAA
* * * *
6939264 AACAA AACAA AA-AA AA-AA AA-AA CAAAAA AATGA AA-AA AATAAA AATAA
1 AATAA AATAA AATAA AATAA AATAA -AATAA AATAA AATAA AAT-AA AATAA
6939312 AAT-A AATAA AATA
1 AATAA AATAA AATA
6939325 TAAAACTAAA
Statistics
Matches: 88, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
4 26 0.30
5 50 0.57
6 12 0.14
ACGTcount: A:0.82, C:0.05, G:0.03, T:0.11
Consensus pattern (5 bp):
AATAA
Found at i:6939234 original size:15 final size:14
Alignment explanation
Indices: 6939216--6939329 Score: 83
Period size: 15 Copynumber: 7.9 Consensus size: 14
6939206 TATAGTGCAT
6939216 AATAAAATAAAATAA
1 AATAAAATAAAA-AA
6939231 AATAAAA-ACAAAAA
1 AATAAAATA-AAAAA
*
6939245 AGTAAAAGTAAAAAA
1 AATAAAA-TAAAAAA
* *
6939260 CA-AAAACAAAACAA
1 AATAAAATAAAA-AA
6939274 AA-AAAA-AAAAAA
1 AATAAAATAAAAAA
* *
6939286 CAAAAAAATGAAAAA
1 -AATAAAATAAAAAA
*
6939301 AATAAAAATAAAATA
1 AAT-AAAATAAAAAA
6939316 AATAAAATATAAAA
1 AATAAAATA-AAAA
6939330 CTAAATGAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
12 2 0.03
13 10 0.12
14 32 0.40
15 35 0.44
16 1 0.01
ACGTcount: A:0.82, C:0.04, G:0.03, T:0.11
Consensus pattern (14 bp):
AATAAAATAAAAAA
Found at i:6939314 original size:20 final size:20
Alignment explanation
Indices: 6939219--6939339 Score: 65
Period size: 19 Copynumber: 6.0 Consensus size: 20
6939209 AGTGCATAAT
6939219 AAAAT-AAAATAAAAT-AAA
1 AAAATAAAAATAAAATGAAA
* *
6939237 AACAA-AAAAGTAAAA-GTAA
1 AA-AATAAAAATAAAATGAAA
* * **
6939256 AAAACAAAAACAAAACAAAAAA
1 AAAATAAAAA-TAAA-ATGAAA
* *
6939278 AAAAAAAACAAAAAAATGAAA
1 AAAATAAA-AATAAAATGAAA
6939299 AAAATAAAAATAAAAT-AAA
1 AAAATAAAAATAAAATGAAA
6939318 TAAAATATAAAACT-AAATGAAA
1 -AAAATA-AAAA-TAAAATGAAA
6939340 TCTGTTGGGT
Statistics
Matches: 80, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.05
19 21 0.26
20 16 0.20
21 20 0.25
22 17 0.21
23 2 0.03
ACGTcount: A:0.80, C:0.05, G:0.03, T:0.12
Consensus pattern (20 bp):
AAAATAAAAATAAAATGAAA
Found at i:6939340 original size:17 final size:16
Alignment explanation
Indices: 6939296--6939340 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 16
6939286 CAAAAAAATG
6939296 AAAA-AAATAAAA-AT
1 AAAATAAATAAAATAT
6939310 AAAATAAATAAAATAT
1 AAAATAAATAAAATAT
*
6939326 AAAACTAAATGAAAT
1 AAAA-TAAATAAAAT
6939341 CTGTTGGGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 4 0.15
15 8 0.30
16 6 0.22
17 9 0.33
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (16 bp):
AAAATAAATAAAATAT
Found at i:6939340 original size:22 final size:21
Alignment explanation
Indices: 6939290--6939340 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
6939280 AAAAAACAAA
6939290 AAAATGAAA-AAAATAAAAAT
1 AAAATGAAATAAAATAAAAAT
6939310 AAAAT-AAATAAAATATAAAACT
1 AAAATGAAATAAAATA-AAAA-T
6939332 -AAATGAAAT
1 AAAATGAAAT
6939341 CTGTTGGGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 3 0.11
20 11 0.41
21 8 0.30
22 5 0.19
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.20
Consensus pattern (21 bp):
AAAATGAAATAAAATAAAAAT
Found at i:6956470 original size:26 final size:26
Alignment explanation
Indices: 6956441--6956492 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
6956431 GAAAGTTTTA
6956441 GGAAAATATGAAAAATTTCAAAAAAT
1 GGAAAATATGAAAAATTTCAAAAAAT
6956467 GGAAAATATGAAAAATTTCAAAAAAT
1 GGAAAATATGAAAAATTTCAAAAAAT
6956493 AAAAAGGGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.62, C:0.04, G:0.12, T:0.23
Consensus pattern (26 bp):
GGAAAATATGAAAAATTTCAAAAAAT
Found at i:6959099 original size:20 final size:20
Alignment explanation
Indices: 6959085--6959140 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
6959075 CATGATTGAG
6959085 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
6959105 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
*
6959125 ATGAAATGCACATGAT
1 ATGATATGCACATGAT
6959141 GAATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:6959101 original size:11 final size:11
Alignment explanation
Indices: 6959085--6959140 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
6959075 CATGATTGAG
6959085 ATGATATGCAC
1 ATGATATGCAC
*
6959096 ATGATATG--T
1 ATGATATGCAC
6959105 ATGATATGCAC
1 ATGATATGCAC
*
6959116 ATGATATG--T
1 ATGATATGCAC
*
6959125 ATGAAATGCAC
1 ATGATATGCAC
6959136 ATGAT
1 ATGAT
6959141 GAATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:6959281 original size:25 final size:26
Alignment explanation
Indices: 6959190--6959300 Score: 165
Period size: 26 Copynumber: 4.3 Consensus size: 26
6959180 GAGGAAGTGC
6959190 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
6959216 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
6959242 AAAAAGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
6959268 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
6959291 AAAAGAGGCT
1 AAAAG-GGCT
6959301 AGGCCTCCAG
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
23 5 0.06
24 9 0.12
25 8 0.10
26 56 0.72
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:6960399 original size:37 final size:37
Alignment explanation
Indices: 6960325--6960412 Score: 108
Period size: 37 Copynumber: 2.4 Consensus size: 37
6960315 AGTATATAAG
* *
6960325 TAATCCAACC-A-AAACACGCCAATCGCTCATAAAAGC
1 TAATCCAACCGATAAA-ATGCCAAACGCTCATAAAAGC
* * *
6960361 TAATCCACCCGATAAAATGCCAAACGCTTATAAGAGC
1 TAATCCAACCGATAAAATGCCAAACGCTCATAAAAGC
6960398 TAATCCAACCGATAA
1 TAATCCAACCGATAA
6960413 CACACCACAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
36 9 0.20
37 32 0.73
38 3 0.07
ACGTcount: A:0.43, C:0.30, G:0.10, T:0.17
Consensus pattern (37 bp):
TAATCCAACCGATAAAATGCCAAACGCTCATAAAAGC
Found at i:6964416 original size:43 final size:43
Alignment explanation
Indices: 6964297--6964421 Score: 216
Period size: 42 Copynumber: 2.9 Consensus size: 43
6964287 ATATCCCGTA
*
6964297 ATAATATCCTATAATATCCCATTAGGAATCAAATTGCTAAGAG
1 ATAATATCCTACAATATCCCATTAGGAATCAAATTGCTAAGAG
6964340 ATAATATCCTAC-ATATCCCATTAGGAATCAAATTGCTAAGAG
1 ATAATATCCTACAATATCCCATTAGGAATCAAATTGCTAAGAG
* *
6964382 ATAATATCCTACAATATCCCATTAGAAATAAAATTGCTAA
1 ATAATATCCTACAATATCCCATTAGGAATCAAATTGCTAA
6964422 AAAGAAAATA
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
42 42 0.54
43 36 0.46
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.30
Consensus pattern (43 bp):
ATAATATCCTACAATATCCCATTAGGAATCAAATTGCTAAGAG
Found at i:6967349 original size:22 final size:23
Alignment explanation
Indices: 6967322--6967364 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
6967312 TATAACTTTC
6967322 TTTTGGA-T-AAATATTTATAAAA
1 TTTTGGATTAAAAT-TTTATAAAA
6967344 TTTTGGATTAAAATTTTATAA
1 TTTTGGATTAAAATTTTATAA
6967365 CATAAAAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.37
23 8 0.42
24 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (23 bp):
TTTTGGATTAAAATTTTATAAAA
Found at i:6968082 original size:23 final size:23
Alignment explanation
Indices: 6968056--6968101 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
6968046 GGTGATAAAA
* * *
6968056 GTATGCAAATGTAATAATAATAT
1 GTATACAAATGTAACAAAAATAT
*
6968079 GTATACAATTGTAACAAAAATAT
1 GTATACAAATGTAACAAAAATAT
6968102 TTAATTACTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.33
Consensus pattern (23 bp):
GTATACAAATGTAACAAAAATAT
Found at i:6968141 original size:3 final size:3
Alignment explanation
Indices: 6968133--6968169 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
6968123 AAATAGATAT
6968133 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
6968170 AAAAAAATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:6970018 original size:47 final size:47
Alignment explanation
Indices: 6969917--6970020 Score: 129
Period size: 47 Copynumber: 2.2 Consensus size: 47
6969907 GCACCTTGTG
** * * *
6969917 TGTCGTACTGTTACTGTTACTTCGGTTTAATCCAATGAGGTACTGAG
1 TGTCGTACTGTTACTGTTACTTCGGTCAAAGCCAATGAGGCACTGAA
**
6969964 TACCGTACTGTTACTGTTTACTTCGG-CAAAGCCAATGAGGCACTGAA
1 TGTCGTACTGTTACTG-TTACTTCGGTCAAAGCCAATGAGGCACTGAA
6970011 TGTCGTACTG
1 TGTCGTACTG
6970021 GTGTGTTGGT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
47 38 0.81
48 9 0.19
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (47 bp):
TGTCGTACTGTTACTGTTACTTCGGTCAAAGCCAATGAGGCACTGAA
Found at i:6970519 original size:39 final size:40
Alignment explanation
Indices: 6970460--6970536 Score: 95
Period size: 39 Copynumber: 1.9 Consensus size: 40
6970450 ATTGAAAGAC
* *
6970460 TAAAGTTACTGAATACCTAA-TGATTACTGAATGATTATAT
1 TAAAGTTACTGAACAACTAATTG-TTACTGAATGATTATAT
* *
6970500 TAAAG-TACTGAACAACTAATTGTTATTGATTGATTAT
1 TAAAGTTACTGAACAACTAATTGTTACTGAATGATTAT
6970537 GAATAGAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 25 0.78
40 7 0.22
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (40 bp):
TAAAGTTACTGAACAACTAATTGTTACTGAATGATTATAT
Found at i:6977434 original size:45 final size:46
Alignment explanation
Indices: 6977319--6977445 Score: 122
Period size: 45 Copynumber: 2.8 Consensus size: 46
6977309 CCTAAGCCGA
* *
6977319 TAAAA-GGTAAGCTCA-ATTGAGCTG-AA-TGATAAGCTCCGTAGAGC
1 TAAAACGGTAAGCTCATA-AGAGCTGAAACTG-TAAGCTCCGAAGAGC
* * *
6977363 TAAAACGGTAAGCCCCTAAG-GACTGAAACTGTAAGCTCTGAAGAGC
1 TAAAACGGTAAGCTCATAAGAG-CTGAAACTGTAAGCTCCGAAGAGC
* *
6977409 T-GAACGGTAAGCTCATAAGAGCTGAAACGGTAAGCTC
1 TAAAACGGTAAGCTCATAAGAGCTGAAACTGTAAGCTC
6977446 ATACGAGCTG
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
44 6 0.09
45 42 0.62
46 18 0.26
47 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (46 bp):
TAAAACGGTAAGCTCATAAGAGCTGAAACTGTAAGCTCCGAAGAGC
Found at i:6977444 original size:23 final size:23
Alignment explanation
Indices: 6977358--6977455 Score: 112
Period size: 23 Copynumber: 4.3 Consensus size: 23
6977348 TAAGCTCCGT
* * *
6977358 AGAGCTAAAACGGTAAGCCCCTA
1 AGAGCTGAAACGGTAAGCTCATA
*
6977381 AG-GACTGAAACTGTAAGCTC-TGA
1 AGAG-CTGAAACGGTAAGCTCAT-A
6977404 AGAGCTG-AACGGTAAGCTCATA
1 AGAGCTGAAACGGTAAGCTCATA
6977426 AGAGCTGAAACGGTAAGCTCATA
1 AGAGCTGAAACGGTAAGCTCATA
*
6977449 CGAGCTG
1 AGAGCTG
6977456 TGGTGAGTCT
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
22 21 0.32
23 43 0.66
24 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (23 bp):
AGAGCTGAAACGGTAAGCTCATA
Found at i:6980434 original size:26 final size:24
Alignment explanation
Indices: 6980393--6980442 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
6980383 GTCATCACTA
* *
6980393 ACTAAAAATTAATTTATAATAATT
1 ACTAAAAAATAATTTAAAATAATT
6980417 ACTAACAAAATAACTTTAAAATAATT
1 ACTAA-AAAATAA-TTTAAAATAATT
6980443 TAAAAACAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 6 0.27
26 11 0.50
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (24 bp):
ACTAAAAAATAATTTAAAATAATT
Found at i:6980609 original size:14 final size:14
Alignment explanation
Indices: 6980589--6980617 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
6980579 CTCTACTATC
6980589 CTTTTTTTTTT-TT
1 CTTTTTTTTTTCTT
6980602 CTTTTTTTTTTCTT
1 CTTTTTTTTTTCTT
6980616 CT
1 CT
6980618 CCTTTCTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
CTTTTTTTTTTCTT
Found at i:6987312 original size:19 final size:20
Alignment explanation
Indices: 6987288--6987326 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
6987278 TTTATGAAAA
6987288 TATTTTCTAATTT-ATTTTC
1 TATTTTCTAATTTCATTTTC
*
6987307 TATTTTCTATTTTCATTTTC
1 TATTTTCTAATTTCATTTTC
6987327 AAAAAATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.18, C:0.13, G:0.00, T:0.69
Consensus pattern (20 bp):
TATTTTCTAATTTCATTTTC
Found at i:6991841 original size:14 final size:14
Alignment explanation
Indices: 6991822--6991851 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6991812 CATCTCCATG
6991822 TTTCTCTACTTTCA
1 TTTCTCTACTTTCA
6991836 TTTCTCTACTTTCA
1 TTTCTCTACTTTCA
6991850 TT
1 TT
6991852 CTCCACAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.27, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTCTCTACTTTCA
Found at i:6992192 original size:65 final size:65
Alignment explanation
Indices: 6992104--6992231 Score: 186
Period size: 65 Copynumber: 2.0 Consensus size: 65
6992094 TTCTAACTTC
* * *
6992104 ATTTTCATAGTCCCATAGGCTATTAAACTCATAGCTTACCCTT-CTATTTATTACGTTCAGTGCC
1 ATTTCCATAGTCCCATAGGCTATTAAACTCATAGATTACCCTTGC-ATTTATTACCTTCAGTGCC
6992168 T
65 T
** *
6992169 ATTTCCATAGTCTTATAGGCTATTAAACTCATAGATTACCCTTGCATTTATTTCCTTCAGTGC
1 ATTTCCATAGTCCCATAGGCTATTAAACTCATAGATTACCCTTGCATTTATTACCTTCAGTGC
6992232 TCATTTTCTA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
65 55 0.98
66 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.11, T:0.41
Consensus pattern (65 bp):
ATTTCCATAGTCCCATAGGCTATTAAACTCATAGATTACCCTTGCATTTATTACCTTCAGTGCCT
Found at i:7007014 original size:13 final size:13
Alignment explanation
Indices: 7006996--7007020 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7006986 ATAAACTGTA
7006996 ATATACATACATG
1 ATATACATACATG
7007009 ATATACATACAT
1 ATATACATACAT
7007021 ATTTTAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (13 bp):
ATATACATACATG
Found at i:7007056 original size:16 final size:16
Alignment explanation
Indices: 7007035--7007066 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7007025 TAAACAATGC
*
7007035 TAAACATAACATACAT
1 TAAACACAACATACAT
7007051 TAAACACAACATACAT
1 TAAACACAACATACAT
7007067 ACATAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (16 bp):
TAAACACAACATACAT
Found at i:7008660 original size:15 final size:15
Alignment explanation
Indices: 7008640--7008673 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
7008630 TATCCCGCCA
7008640 TTGTCGAATATTTTG
1 TTGTCGAATATTTTG
7008655 TTGTCGAATATTTTG
1 TTGTCGAATATTTTG
7008670 TTGT
1 TTGT
7008674 GCACTCTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.18, C:0.06, G:0.21, T:0.56
Consensus pattern (15 bp):
TTGTCGAATATTTTG
Found at i:7020151 original size:2 final size:2
Alignment explanation
Indices: 7020144--7020170 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7020134 AGATATGGAA
7020144 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7020171 CACGATAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7024941 original size:31 final size:30
Alignment explanation
Indices: 7024885--7024953 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 30
7024875 TAAAAATATA
*
7024885 ATTTTTAAAAGATTAAATTAAAATTTTATT
1 ATTTTTAAAAGATTAAAGTAAAATTTTATT
**
7024915 ATTTTTAGAAAGATTAAAGTGTAATTTTATT
1 ATTTTTA-AAAGATTAAAGTAAAATTTTATT
7024946 -TTTATTAA
1 ATTT-TTAA
7024954 TTTAAAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.32
31 23 0.68
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (30 bp):
ATTTTTAAAAGATTAAAGTAAAATTTTATT
Found at i:7031753 original size:19 final size:19
Alignment explanation
Indices: 7031729--7031767 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7031719 ATAGTCATGA
7031729 CACGGTCAAGGGTATATGG
1 CACGGTCAAGGGTATATGG
7031748 CACGGTCAAGGGTATATGG
1 CACGGTCAAGGGTATATGG
7031767 C
1 C
7031768 TCATGACTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.18, G:0.36, T:0.21
Consensus pattern (19 bp):
CACGGTCAAGGGTATATGG
Found at i:7035543 original size:24 final size:26
Alignment explanation
Indices: 7035478--7035546 Score: 88
Period size: 24 Copynumber: 2.7 Consensus size: 26
7035468 GCAGACTCAC
7035478 CTTAGCTCGTATGAGCTTACCGATAT
1 CTTAGCTCGTATGAGCTTACCGATAT
* * * *
7035504 ATCAGCTCGTAAGAGCTTA-CTAT-T
1 CTTAGCTCGTATGAGCTTACCGATAT
7035528 CTTAGCTCGTATGAGCTTA
1 CTTAGCTCGTATGAGCTTA
7035547 TTGTTTCAGC
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 17 0.47
25 3 0.08
26 16 0.44
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (26 bp):
CTTAGCTCGTATGAGCTTACCGATAT
Found at i:7035566 original size:23 final size:23
Alignment explanation
Indices: 7035540--7035597 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
7035530 TAGCTCGTAT
* *
7035540 GAGCTTATTGTTTCAGCTCATTA
1 GAGCTTACTGTTTCAGCTCAATA
7035563 GAGCTTACTGTTTCAGCTCAATA
1 GAGCTTACTGTTTCAGCTCAATA
7035586 GAGCTTACTGTT
1 GAGCTTACTGTT
7035598 CATAGCTCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCAATA
Found at i:7035612 original size:24 final size:23
Alignment explanation
Indices: 7035505--7035612 Score: 87
Period size: 23 Copynumber: 4.6 Consensus size: 23
7035495 TACCGATATA
* *
7035505 TCAGCTCGTAAGAGCTTACTATT
1 TCAGCTCGAAAGAGCTTACTGTT
* * * *
7035528 CTTAGCTCGTATGAGCTTATTGTT
1 -TCAGCTCGAAAGAGCTTACTGTT
*
7035552 TCAGCTC-ATTAGAGCTTACTGTT
1 TCAGCTCGA-AAGAGCTTACTGTT
7035575 TCAGCTC-AATAGAGCTTACTG-T
1 TCAGCTCGAA-AGAGCTTACTGTT
7035597 TCATAGCTCGAAAGAG
1 TC--AGCTCGAAAGAG
7035613 TGGAAAATGA
Statistics
Matches: 69, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
22 3 0.04
23 36 0.52
24 28 0.41
25 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (23 bp):
TCAGCTCGAAAGAGCTTACTGTT
Found at i:7036392 original size:28 final size:28
Alignment explanation
Indices: 7036360--7036417 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
7036350 TGAGGAAATG
7036360 ATATCATATGTGAATGAAATGTTATGGA
1 ATATCATATGTGAATGAAATGTTATGGA
7036388 ATATCATATGTGAATGAAATGTTATGGA
1 ATATCATATGTGAATGAAATGTTATGGA
7036416 AT
1 AT
7036418 GGCTGCCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.40, C:0.03, G:0.21, T:0.36
Consensus pattern (28 bp):
ATATCATATGTGAATGAAATGTTATGGA
Found at i:7036745 original size:66 final size:66
Alignment explanation
Indices: 7036621--7036751 Score: 169
Period size: 66 Copynumber: 2.0 Consensus size: 66
7036611 ACGGTCTCAT
* * *
7036621 GCACGGGCGTGTGACTGGTCGTGTGGTACAAGTCAGTATACCCCTAATTTTGGCGCACGACCTAG
1 GCACGGGCGTGTGACTGGCCGTGTGGCACAAGTCAGTATACCCCTAAGTTTGGCGCACGACCTAG
7036686 C
66 C
* *
7036687 GCACGGGCGTGTGACTTGGCCGTGTTGCATAAGTCAGTATA-CCCTACAGGTTT-G-GCACGACC
1 GCACGGGCGTGTGAC-TGGCCGTGTGGCACAAGTCAGTATACCCCTA-A-GTTTGGCGCACGACC
7036749 TAG
63 TAG
7036752 TACACGGCGT
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
66 31 0.54
67 23 0.40
68 3 0.05
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (66 bp):
GCACGGGCGTGTGACTGGCCGTGTGGCACAAGTCAGTATACCCCTAAGTTTGGCGCACGACCTAG
C
Found at i:7043328 original size:24 final size:26
Alignment explanation
Indices: 7043274--7043342 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 26
7043264 GCGGACTCAC
7043274 CTCAGCTCGTATA-AGCTTACCAATAT
1 CTCAGCTCGTA-AGAGCTTACCAATAT
* *
7043300 ATCAGCTCGTAAGAGCTTA-CTAT-T
1 CTCAGCTCGTAAGAGCTTACCAATAT
* *
7043324 CTCAGCTCATATGAGCTTA
1 CTCAGCTCGTAAGAGCTTA
7043343 TTATCTATCC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 17 0.46
25 4 0.11
26 16 0.43
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (26 bp):
CTCAGCTCGTAAGAGCTTACCAATAT
Found at i:7051991 original size:2 final size:2
Alignment explanation
Indices: 7051986--7052017 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7051976 TCATGACATG
7051986 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7052018 GACTAGTCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.