Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 263 of 292
Found at i:75724986 original size:29 final size:32
Alignment explanation
Indices: 75724946--75725020 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 32
75724936 AGTAAATTAA
75724946 TTTAATAA-AAAATTAA-TA-AG-AACTTAAA-T
1 TTTAA-AATAAAATTAAGTATAGAAAC-TAAATT
75724975 TTTAAAATAAAA--AAGTATAGAAACTAAATT
1 TTTAAAATAAAATTAAGTATAGAAACTAAATT
75725005 TTTAAAAGTAAAATTA
1 TTTAAAA-TAAAATTA
75725021 TTAATGATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
27 2 0.05
28 4 0.11
29 15 0.39
30 11 0.29
31 5 0.13
33 1 0.03
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (32 bp):
TTTAAAATAAAATTAAGTATAGAAACTAAATT
Found at i:75731591 original size:3 final size:3
Alignment explanation
Indices: 75731578--75731621 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
75731568 CAAACAAGTA
*
75731578 AAT ATT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
75731622 AAGTTACAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:75731993 original size:10 final size:10
Alignment explanation
Indices: 75731978--75732034 Score: 62
Period size: 10 Copynumber: 5.5 Consensus size: 10
75731968 AATAATATTT
75731978 ATTTTTATAA
1 ATTTTTATAA
75731988 ATTTTTATAA
1 ATTTTTATAA
75731998 ATTTTTTTATAA
1 A--TTTTTATAA
* *
75732010 ATTATTGT-A
1 ATTTTTATAA
75732019 ATTTTTATAA
1 ATTTTTATAA
75732029 CATTTT
1 -ATTTT
75732035 ATATTTCTCG
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
9 7 0.18
10 17 0.44
11 5 0.13
12 10 0.26
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (10 bp):
ATTTTTATAA
Found at i:75732006 original size:12 final size:12
Alignment explanation
Indices: 75731979--75732012 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
75731969 ATAATATTTA
75731979 TTTTTATAAA--
1 TTTTTATAAATT
75731989 TTTTTATAAATT
1 TTTTTATAAATT
75732001 TTTTTATAAATT
1 TTTTTATAAATT
75732013 ATTGTAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.45
12 12 0.55
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TTTTTATAAATT
Found at i:75732024 original size:22 final size:22
Alignment explanation
Indices: 75731974--75732024 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
75731964 ATATAATAAT
*
75731974 ATTTATTTTTATAAATTTTTATA
1 ATTT-TTTTTATAAATTATTATA
* *
75731997 AATTTTTTTATAAATTATTGTA
1 ATTTTTTTTATAAATTATTATA
75732019 ATTTTT
1 ATTTTT
75732025 ATAACATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 21 0.88
23 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
ATTTTTTTTATAAATTATTATA
Found at i:75734092 original size:2 final size:2
Alignment explanation
Indices: 75734085--75734112 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
75734075 TCTACCATAA
75734085 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75734113 TATTTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75736696 original size:82 final size:82
Alignment explanation
Indices: 75736545--75736697 Score: 186
Period size: 82 Copynumber: 1.9 Consensus size: 82
75736535 AAACAAGTAA
* * * *
75736545 TTTGAGCAATTTTGTCTAGTTTCTTTTAACAAATAGATAATGCATTTTTTTCCTTTATTTAGAGT
1 TTTGAGCAAGTTTGTCTAGTTTCTTTTAACAAATAAAGAATGCATTTTATTCCTTTATTTAGAGT
75736610 TAAAAAAAATAATCACT
66 TAAAAAAAATAATCACT
* * * * *
75736627 TTTGTGCAAGTTTGTTTGGTTTCTTTTTACAAATAAAGCATGCA-TTTATT-CTTTATTTCA-AG
1 TTTGAGCAAGTTTGTCTAGTTTCTTTTAACAAATAAAGAATGCATTTTATTCCTTTATTT-AGAG
*
75736689 TTATAAAAA
65 TTAAAAAAA
75736698 TATGCATTAC
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
80 18 0.30
81 6 0.10
82 36 0.60
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.46
Consensus pattern (82 bp):
TTTGAGCAAGTTTGTCTAGTTTCTTTTAACAAATAAAGAATGCATTTTATTCCTTTATTTAGAGT
TAAAAAAAATAATCACT
Found at i:75737767 original size:23 final size:23
Alignment explanation
Indices: 75737716--75737774 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 23
75737706 ATATTAAAAT
* *
75737716 GAAAAAATTACATTTTTACTATC
1 GAAAAAATTATATTTTTACCATC
75737739 GAAAAAATTATATTTTTACCATC
1 GAAAAAATTATATTTTTACCATC
75737762 -ATAAAAATATATA
1 GA-AAAAAT-TATA
75737775 ATTTAACTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
22 1 0.03
23 27 0.84
24 4 0.12
ACGTcount: A:0.49, C:0.10, G:0.03, T:0.37
Consensus pattern (23 bp):
GAAAAAATTATATTTTTACCATC
Found at i:75738883 original size:34 final size:34
Alignment explanation
Indices: 75738780--75738884 Score: 86
Period size: 40 Copynumber: 2.9 Consensus size: 34
75738770 CACTAAATAA
*
75738780 TGATTGTATTGATTTTTATTTTTGATTTTTAATTAAAT
1 TGATTGTATTGATTTTT-TTTTTGA-ATTT--TTAAAT
* * **
75738818 AGTATT-TATCATTATTTTTTATTTTCTATTTTTAAAT
1 TG-ATTGTAT--TGATTTTTT-TTTTGAATTTTTAAAT
75738855 TGATTGTATTGATTTTTTTTTTGAATTTTT
1 TGATTGTATTGATTTTTTTTTTGAATTTTT
75738885 TTATCTTATA
Statistics
Matches: 53, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
34 10 0.19
35 8 0.15
36 3 0.06
37 10 0.19
38 4 0.08
39 7 0.13
40 11 0.21
ACGTcount: A:0.24, C:0.02, G:0.09, T:0.66
Consensus pattern (34 bp):
TGATTGTATTGATTTTTTTTTTGAATTTTTAAAT
Found at i:75744136 original size:12 final size:12
Alignment explanation
Indices: 75744119--75744147 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
75744109 AATAACCCGC
75744119 CCTGCCCCTGCT
1 CCTGCCCCTGCT
75744131 CCTGCCCCTGCT
1 CCTGCCCCTGCT
75744143 CCTGC
1 CCTGC
75744148 TACAACATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.59, G:0.17, T:0.24
Consensus pattern (12 bp):
CCTGCCCCTGCT
Found at i:75746508 original size:15 final size:15
Alignment explanation
Indices: 75746490--75746522 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
75746480 ACTCAAAAGG
75746490 TAAGTATTGAAAAAT
1 TAAGTATTGAAAAAT
*
75746505 TAAGTGTTGAAAAAT
1 TAAGTATTGAAAAAT
75746520 TAA
1 TAA
75746523 ATACTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (15 bp):
TAAGTATTGAAAAAT
Found at i:75751137 original size:31 final size:31
Alignment explanation
Indices: 75751102--75751165 Score: 76
Period size: 32 Copynumber: 2.1 Consensus size: 31
75751092 AAAAAGTTGG
75751102 TTTTTAA-AATTAAAAATTATAAAAAATATAA
1 TTTTTAATAATTAAAAATTATAAAAAAT-TAA
* * * *
75751133 TTTTTAATATTTTAAATTTTTAAAAAATTAA
1 TTTTTAATAATTAAAAATTATAAAAAATTAA
75751164 TT
1 TT
75751166 AAATACTGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 12 0.43
32 16 0.57
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (31 bp):
TTTTTAATAATTAAAAATTATAAAAAATTAA
Found at i:75756796 original size:21 final size:21
Alignment explanation
Indices: 75756746--75756796 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
75756736 TATTATTTAA
* *
75756746 AATATTTTAAAATTGTAAAAG
1 AATATTTAAAAATTATAAAAG
* *
75756767 AGT-TATTAAAAATTATAAAAT
1 AATAT-TTAAAAATTATAAAAG
75756788 AATATTTAA
1 AATATTTAA
75756797 CTTTTGTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 4
0.72 0.16 0.12
Matches are distributed among these distances:
20 1 0.04
21 21 0.91
22 1 0.04
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (21 bp):
AATATTTAAAAATTATAAAAG
Found at i:75756848 original size:19 final size:19
Alignment explanation
Indices: 75756818--75756868 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
75756808 TTTGAAAATT
75756818 TTATTAAAAAATT-CAAATAA
1 TTATT-AAAAATTGCAAA-AA
*
75756838 TTATTAAAAATTGTAAAAA
1 TTATTAAAAATTGCAAAAA
*
75756857 TTATTTAAAATT
1 TTATTAAAAATT
75756869 TGTGAATTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 20 0.71
20 8 0.29
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
TTATTAAAAATTGCAAAAA
Found at i:75756864 original size:20 final size:21
Alignment explanation
Indices: 75756818--75756871 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
75756808 TTTGAAAATT
* *
75756818 TTATTAAAAAATT-CAAATAA
1 TTATTTAAAAATTGTAAATAA
75756838 TTA-TTAAAAATTGTAAA-AA
1 TTATTTAAAAATTGTAAATAA
*
75756857 TTATTTAAAATTTGT
1 TTATTTAAAAATTGT
75756872 GAATTGGTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.43
Consensus pattern (21 bp):
TTATTTAAAAATTGTAAATAA
Found at i:75757132 original size:19 final size:20
Alignment explanation
Indices: 75757094--75757160 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
75757084 TTTGTTTTGT
75757094 TAATTATTTACAACTTTTAA
1 TAATTATTTACAACTTTTAA
*
75757114 TAATTATTTACTA-TTTTAA
1 TAATTATTTACAACTTTTAA
* *
75757133 TAA-TATTTAAAAATTTTAAA
1 TAATTATTTACAACTTTT-AA
75757153 TAA-TATTT
1 TAATTATTT
75757161 TATTATTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
18 7 0.17
19 13 0.31
20 22 0.52
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (20 bp):
TAATTATTTACAACTTTTAA
Found at i:75757150 original size:38 final size:40
Alignment explanation
Indices: 75757098--75757175 Score: 99
Period size: 38 Copynumber: 2.0 Consensus size: 40
75757088 TTTTGTTAAT
* *
75757098 TATTTACAACTTTT-AATAAT-TATTTACTA-TTTTAATAA
1 TATTTAAAAATTTTAAATAATAT-TTTACTATTTTTAATAA
*
75757136 TATTTAAAAATTTTAAATAATATTTTATTATTTTTAATAA
1 TATTTAAAAATTTTAAATAATATTTTACTATTTTTAATAA
75757176 ACTTTTTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
38 12 0.35
39 12 0.35
40 10 0.29
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (40 bp):
TATTTAAAAATTTTAAATAATATTTTACTATTTTTAATAA
Found at i:75757168 original size:20 final size:19
Alignment explanation
Indices: 75757108--75757175 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
75757098 TATTTACAAC
*
75757108 TTTTAATAAT-TATTTACTA
1 TTTTAATAATAT-TTTAATA
* *
75757127 TTTTAATAATATTTAAAAA
1 TTTTAATAATATTTTAATA
*
75757146 TTTTAAATAATATTTTATTA
1 TTTT-AATAATATTTTAATA
75757166 TTTTTAATAA
1 -TTTTAATAA
75757176 ACTTTTTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
19 18 0.45
20 18 0.45
21 4 0.10
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTAATAATATTTTAATA
Found at i:75757230 original size:19 final size:20
Alignment explanation
Indices: 75757197--75757243 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
75757187 TTTAAAAACG
* *
75757197 TTTTAAAAATATTT-ATTTT
1 TTTTACAAATATTTAAGTTT
75757216 TTTTGACAAAT-TTTAAGTTT
1 TTTT-ACAAATATTTAAGTTT
75757236 TTTTACAA
1 TTTTACAA
75757244 TTATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (20 bp):
TTTTACAAATATTTAAGTTT
Found at i:75759149 original size:15 final size:14
Alignment explanation
Indices: 75759114--75759155 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
75759104 TATCAAAATT
75759114 AATTAAA-ATATAAA
1 AATTAAATAT-TAAA
*
75759128 AATTAAATTTTAAA
1 AATTAAATATTAAA
75759142 AATATAAATATTAA
1 AAT-TAAATATTAA
75759156 CACATTAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 14 0.58
15 10 0.42
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AATTAAATATTAAA
Found at i:75759293 original size:2 final size:2
Alignment explanation
Indices: 75759286--75759310 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
75759276 TTCTTTGCCC
75759286 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
75759311 ATATGTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:75765497 original size:22 final size:22
Alignment explanation
Indices: 75765469--75765513 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
75765459 TGTTTTCTTC
75765469 TTCAAAAGCCATAAAGTTCAGA
1 TTCAAAAGCCATAAAGTTCAGA
*
75765491 TTCAAAAGCCATGAAGTTCAGA
1 TTCAAAAGCCATAAAGTTCAGA
75765513 T
1 T
75765514 ACCAAATGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (22 bp):
TTCAAAAGCCATAAAGTTCAGA
Found at i:75768277 original size:12 final size:12
Alignment explanation
Indices: 75768260--75768285 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75768250 AAAATGCATG
75768260 TTAGCTAATAAT
1 TTAGCTAATAAT
75768272 TTAGCTAATAAT
1 TTAGCTAATAAT
75768284 TT
1 TT
75768286 GAAGTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (12 bp):
TTAGCTAATAAT
Found at i:75774042 original size:47 final size:46
Alignment explanation
Indices: 75773933--75774043 Score: 134
Period size: 47 Copynumber: 2.3 Consensus size: 46
75773923 CCGGGATAAG
* *
75773933 CACATAGTGCTACATTGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCT-CATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
75773980 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGC-TCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
75774027 CACATAGTGTCTCATCG
1 CACATAGTG-CTCATCG
75774044 ACTCAATGTC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
47 50 0.93
48 4 0.07
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (46 bp):
CACATAGTGCTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:75774793 original size:4 final size:4
Alignment explanation
Indices: 75774784--75774863 Score: 61
Period size: 4 Copynumber: 18.8 Consensus size: 4
75774774 CCCTTTTCTA
* ** * *
75774784 TTTC TTTC TTTC TTTC CTTC TTTC TTTC TCAC GTTTGC TGTC TGTAAC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTT-C TTTC T-T-TC
*
75774832 TTTTC TATC TTTC TTTC TTTC TTTC TTTC TTT
1 -TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
75774864 TTAACTTACT
Statistics
Matches: 59, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
4 51 0.86
5 4 0.07
6 3 0.05
7 1 0.02
ACGTcount: A:0.05, C:0.25, G:0.05, T:0.65
Consensus pattern (4 bp):
TTTC
Found at i:75780481 original size:2 final size:2
Alignment explanation
Indices: 75780474--75780519 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
75780464 AATTCATTCG
* *
75780474 CA CA CA CA CA TA CA CA CA TA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
75780516 CA CA
1 CA CA
75780520 TATATATATA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.46, G:0.00, T:0.04
Consensus pattern (2 bp):
CA
Found at i:75780792 original size:39 final size:39
Alignment explanation
Indices: 75780769--75780877 Score: 184
Period size: 39 Copynumber: 2.8 Consensus size: 39
75780759 TCCCAGCACG
* *
75780769 TAGCCTGCGGACCTCAAGTCCGGATATATTTCTAGCATA
1 TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
75780808 TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
1 TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
*
75780847 TAGCCTGTGGATCTCATGTCCGGATAT-TTTC
1 TAGCCTGCGGATCTCATGTCCGGATATATTTC
75780878 AATCTCATCC
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
38 4 0.06
39 63 0.94
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (39 bp):
TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
Found at i:75784732 original size:47 final size:47
Alignment explanation
Indices: 75784623--75784733 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
75784613 CCGGGATAAG
* *
75784623 CACATAGTGCTTCATTGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
75784670 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
75784717 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
75784734 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:75785485 original size:4 final size:4
Alignment explanation
Indices: 75785476--75785551 Score: 53
Period size: 4 Copynumber: 17.8 Consensus size: 4
75785466 CCCTTTTCTA
* ** * *
75785476 TTTC TTTC TTTC TTTC CTTC TTTC TTTC TCAC GTTTGC TCTC TGTAAC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTT-C TTTC T-T-TC
*
75785524 ATTTC TATC TTTC TTTC TTTC TTTC TTT
1 -TTTC TTTC TTTC TTTC TTTC TTTC TTT
75785552 TTTTAACTTA
Statistics
Matches: 55, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
4 47 0.85
5 4 0.07
6 3 0.05
7 1 0.02
ACGTcount: A:0.07, C:0.26, G:0.04, T:0.63
Consensus pattern (4 bp):
TTTC
Found at i:75788180 original size:17 final size:15
Alignment explanation
Indices: 75788158--75788191 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 15
75788148 ATTCCATTGC
75788158 TTCTTCTTCCGTTTTCT
1 TTCTTCTT-C-TTTTCT
75788175 TTCTTCTTCTTTTCT
1 TTCTTCTTCTTTTCT
75788190 TT
1 TT
75788192 TTGCTCGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 1 0.06
17 8 0.47
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.71
Consensus pattern (15 bp):
TTCTTCTTCTTTTCT
Found at i:75788891 original size:33 final size:33
Alignment explanation
Indices: 75788849--75788916 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
75788839 CTCAATTCAT
75788849 TGCTAGTTTCCATCAGACAATCCATCGAATCAA
1 TGCTAGTTTCCATCAGACAATCCATCGAATCAA
75788882 TGCTAGTTTCCATCAGACAATCCATCGAATCAA
1 TGCTAGTTTCCATCAGACAATCCATCGAATCAA
75788915 TG
1 TG
75788917 ACAAAATGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (33 bp):
TGCTAGTTTCCATCAGACAATCCATCGAATCAA
Found at i:75789022 original size:14 final size:15
Alignment explanation
Indices: 75788997--75789025 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
75788987 TTTCCAATTC
75788997 TTTTTTGCTTTCTCA
1 TTTTTTGCTTTCTCA
75789012 TTTTTTG-TTTCTCA
1 TTTTTTGCTTTCTCA
75789026 ATCCGATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.07, C:0.17, G:0.07, T:0.69
Consensus pattern (15 bp):
TTTTTTGCTTTCTCA
Found at i:75792971 original size:27 final size:26
Alignment explanation
Indices: 75792941--75793020 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 26
75792931 AAAAGAAATT
75792941 AAAATAATTTAGAAATAAAAAATTCAA
1 AAAAT-ATTTAGAAATAAAAAATTCAA
*
75792968 AAAAT-TTTAAGAAATATAAAAATCCAA
1 AAAATATTT-AGAAATA-AAAAATTCAA
75792995 AAAATATGTTAGAAAATAATAAAATT
1 AAAATAT-TTAG-AAATAA-AAAATT
75793021 AGAGAAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
25 3 0.07
26 7 0.16
27 19 0.42
28 4 0.09
29 12 0.27
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.28
Consensus pattern (26 bp):
AAAATATTTAGAAATAAAAAATTCAA
Found at i:75793056 original size:20 final size:19
Alignment explanation
Indices: 75793007--75793057 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
75792997 AATATGTTAG
* *
75793007 AAAATAATAAAATTAGAGAA
1 AAAAT-ATAAAATTACAAAA
*
75793027 AAATTATAAAATTACAAAA
1 AAAATATAAAATTACAAAA
75793046 AACAATATAAAA
1 AA-AATATAAAA
75793058 ATTTTACTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.22
Consensus pattern (19 bp):
AAAATATAAAATTACAAAA
Found at i:75793103 original size:32 final size:33
Alignment explanation
Indices: 75793042--75793103 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
75793032 ATAAAATTAC
*
75793042 AAAAAACAATATAAAAATTTTACTAATTTTTTT
1 AAAAAACAATATAAAAATTTTAATAATTTTTTT
75793075 AAAAAA-AATATTAAAAATTTTAAT-ATTTT
1 AAAAAACAATA-TAAAAATTTTAATAATTTT
75793104 AAAATTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 9 0.33
33 18 0.67
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (33 bp):
AAAAAACAATATAAAAATTTTAATAATTTTTTT
Found at i:75798158 original size:3 final size:3
Alignment explanation
Indices: 75798150--75798178 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
75798140 GTGAAAATAG
75798150 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
75798179 AATTTACTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:75810673 original size:39 final size:39
Alignment explanation
Indices: 75810614--75810753 Score: 210
Period size: 39 Copynumber: 3.6 Consensus size: 39
75810604 ATCGTGATCT
* * *
75810614 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
*
75810653 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAA-T
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
*
75810691 GAAAGCCCGAAGGCTAACTGAAGCACACAAGTACTAAACA
1 G-AAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
*
75810731 GAAGCCCGAGGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
75810754 TCATCAAAGC
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 90 0.98
40 1 0.01
ACGTcount: A:0.39, C:0.24, G:0.24, T:0.12
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
Found at i:75810712 original size:19 final size:19
Alignment explanation
Indices: 75810654--75810712 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
75810644 TGCTAAACAG
75810654 AAGCCCGAAGGCTAACTG-
1 AAGCCCGAAGGCTAACTGA
*
75810672 AAGCACAC-AAGTGCTAAATGA
1 AAGC-C-CGAAG-GCTAACTGA
75810693 AAGCCCGAAGGCTAACTGA
1 AAGCCCGAAGGCTAACTGA
75810712 A
1 A
75810713 GCACACAAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
18 4 0.12
19 14 0.41
20 12 0.35
21 4 0.12
ACGTcount: A:0.41, C:0.24, G:0.24, T:0.12
Consensus pattern (19 bp):
AAGCCCGAAGGCTAACTGA
Found at i:75813823 original size:26 final size:26
Alignment explanation
Indices: 75813794--75813847 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
75813784 TTTAAATACG
75813794 TGAATGCCTATGATAAATCTTGAACA
1 TGAATGCCTATGATAAATCTTGAACA
75813820 TGAATGCCTATGATAAATCTTGAACA
1 TGAATGCCTATGATAAATCTTGAACA
75813846 TG
1 TG
75813848 CTAGTAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (26 bp):
TGAATGCCTATGATAAATCTTGAACA
Found at i:75815444 original size:35 final size:35
Alignment explanation
Indices: 75815377--75815544 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
75815367 TCCTCATTGA
*** *
75815377 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
75815413 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
75815453 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
75815488 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
75815523 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
75815545 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
35 74 0.63
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:75815503 original size:75 final size:73
Alignment explanation
Indices: 75815372--75815544 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 73
75815362 GGTTTTCCTC
*** * * **
75815372 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
75815437 TCAGTATGG
65 TCAGTATGG
*
75815446 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
75815510 ACTCAGTATGG
63 ACTCAGTATGG
75815521 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
75815545 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 4 0.05
75 46 0.52
76 15 0.17
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:75817701 original size:46 final size:46
Alignment explanation
Indices: 75817518--75817700 Score: 303
Period size: 46 Copynumber: 4.0 Consensus size: 46
75817508 TTTCTGTCAT
* ** *
75817518 GTTGCCATGGTATCTTTCAACAATGGTCTTATTCATTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
**
75817564 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
*
75817610 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
75817656 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
75817701 GAGAGCCCAC
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 132 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
Found at i:75818143 original size:23 final size:23
Alignment explanation
Indices: 75818115--75818160 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
75818105 TCACATAACC
75818115 ACATATTTCAAGTATTTAAAATA
1 ACATATTTCAAGTATTTAAAATA
75818138 ACATATTTCAAGTATTTAAAATA
1 ACATATTTCAAGTATTTAAAATA
75818161 CAATTCAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (23 bp):
ACATATTTCAAGTATTTAAAATA
Found at i:75819820 original size:16 final size:16
Alignment explanation
Indices: 75819801--75819838 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
75819791 AATTTTTCCC
*
75819801 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
75819817 TTTTTCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
75819833 TCTTTC
1 TTTTTC
75819839 TCCTGCTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:75819910 original size:2 final size:2
Alignment explanation
Indices: 75819905--75819933 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
75819895 CCTTTTACTT
75819905 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
75819934 ATAACTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:75826611 original size:29 final size:28
Alignment explanation
Indices: 75826558--75826617 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
75826548 TAATTTTTAA
* *
75826558 ATTTTTAAAAATACAAAATTATAAAACT
1 ATTTTTAAAAATAAAAAATCATAAAACT
*
75826586 ATTTTTAAAAATAAAAAATCATTAAAATT
1 ATTTTTAAAAATAAAAAATCA-TAAAACT
75826615 ATT
1 ATT
75826618 AAAAATTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (28 bp):
ATTTTTAAAAATAAAAAATCATAAAACT
Found at i:75826773 original size:2 final size:2
Alignment explanation
Indices: 75826766--75826802 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
75826756 TGATTTGATA
75826766 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
75826803 AATTTAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:75839626 original size:24 final size:24
Alignment explanation
Indices: 75839576--75839621 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
75839566 TTTTTTAGTT
75839576 AAATTTGATATTAATTTTCTTTAA
1 AAATTTGATATTAATTTTCTTTAA
*
75839600 AAATTTGA-ATTACTTTT-TTTAA
1 AAATTTGATATTAATTTTCTTTAA
75839622 CAAAAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 8 0.38
24 8 0.38
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (24 bp):
AAATTTGATATTAATTTTCTTTAA
Found at i:75839742 original size:15 final size:15
Alignment explanation
Indices: 75839722--75839753 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
75839712 AATATTTTAT
75839722 ATACCATATATTAAC
1 ATACCATATATTAAC
75839737 ATACCATATATTAAC
1 ATACCATATATTAAC
75839752 AT
1 AT
75839754 GACACTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (15 bp):
ATACCATATATTAAC
Found at i:75845894 original size:6 final size:6
Alignment explanation
Indices: 75845879--75845930 Score: 86
Period size: 6 Copynumber: 8.7 Consensus size: 6
75845869 ATAATTTAAA
* *
75845879 ACATTT ACATAC ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
75845927 ACAT
1 ACAT
75845931 GCATATATGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (6 bp):
ACATAT
Found at i:75848413 original size:15 final size:15
Alignment explanation
Indices: 75848393--75848422 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
75848383 TAATAAATTT
75848393 AAATAAAAATATAAA
1 AAATAAAAATATAAA
*
75848408 AAATAAACATATAAA
1 AAATAAAAATATAAA
75848423 TCGACATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (15 bp):
AAATAAAAATATAAA
Found at i:75851980 original size:46 final size:46
Alignment explanation
Indices: 75851933--75852160 Score: 323
Period size: 46 Copynumber: 5.0 Consensus size: 46
75851923 GCTCTCTGAT
** * *
75851933 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
75851979 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
75852025 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
75852071 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
75852117 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
75852161 TCAAAGATAA
Statistics
Matches: 164, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 163 0.99
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:75852462 original size:16 final size:17
Alignment explanation
Indices: 75852441--75852473 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
75852431 ATGATGGTGC
75852441 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
75852457 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
75852474 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:75863010 original size:6 final size:6
Alignment explanation
Indices: 75862996--75863048 Score: 61
Period size: 6 Copynumber: 8.8 Consensus size: 6
75862986 GTCTGCTTTG
* * * * *
75862996 CTCCCA CTACCA CTACCA CTGCCG CTTCCA CTCCCA CTCCCA CTCCCA
1 CTCCCA CTCCCA CTCCCA CTCCCA CTCCCA CTCCCA CTCCCA CTCCCA
75863044 CTCCC
1 CTCCC
75863049 GCTTGCATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.17, C:0.60, G:0.04, T:0.19
Consensus pattern (6 bp):
CTCCCA
Found at i:75863030 original size:30 final size:30
Alignment explanation
Indices: 75862996--75863069 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
75862986 GTCTGCTTTG
*
75862996 CTCCCACTACCACTACCACTGCCGCTTCCA
1 CTCCCACTACCACTACCACTCCCGCTTCCA
* * *
75863026 CTCCCACTCCCACTCCCACTCCCGCTTGCA
1 CTCCCACTACCACTACCACTCCCGCTTCCA
*
75863056 -TCACCACTTCCACT
1 CTC-CCACTACCACT
75863070 TTTCCCAGCT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 2 0.05
30 36 0.95
ACGTcount: A:0.18, C:0.55, G:0.05, T:0.22
Consensus pattern (30 bp):
CTCCCACTACCACTACCACTCCCGCTTCCA
Found at i:75869535 original size:17 final size:18
Alignment explanation
Indices: 75869509--75869543 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
75869499 TGTTTCTTAA
75869509 ATATAATTTTAAA-AAAC
1 ATATAATTTTAAATAAAC
*
75869526 ATATATTTTTAAATAAAC
1 ATATAATTTTAAATAAAC
75869544 GAGTATAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (18 bp):
ATATAATTTTAAATAAAC
Found at i:75871212 original size:22 final size:23
Alignment explanation
Indices: 75871170--75871214 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
75871160 ATTAGTTTTA
*
75871170 AGAGTTCTAATTTATTGTTAAAT
1 AGAGTTCTAATTTATAGTTAAAT
75871193 AGAGTT-TAA-TTATAGATTAAAT
1 AGAGTTCTAATTTATAG-TTAAAT
75871215 TATTTGTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 9 0.45
23 6 0.30
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.44
Consensus pattern (23 bp):
AGAGTTCTAATTTATAGTTAAAT
Found at i:75873256 original size:70 final size:70
Alignment explanation
Indices: 75873172--75873312 Score: 219
Period size: 70 Copynumber: 2.0 Consensus size: 70
75873162 TGTTATATCT
* * *
75873172 CATCAATATTTCATCTAGTACATACAATTGGTTTCAATTTAACTAGACACATGTGCATGCCATTC
1 CATCAATACTTCATCTAGTACATAAAATTGGTTTCAATTTAACTAGACACATGTGCAAGCCATTC
75873237 TAAAA
66 TAAAA
* * * *
75873242 CATCAATACTTCATCTAGTATATAAAATTGGTTTTAGTTTAACTAGACGCATGTGCAAGCCATTC
1 CATCAATACTTCATCTAGTACATAAAATTGGTTTCAATTTAACTAGACACATGTGCAAGCCATTC
75873307 TAAAA
66 TAAAA
75873312 C
1 C
75873313 TAGATTAAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.34
Consensus pattern (70 bp):
CATCAATACTTCATCTAGTACATAAAATTGGTTTCAATTTAACTAGACACATGTGCAAGCCATTC
TAAAA
Found at i:75882397 original size:23 final size:23
Alignment explanation
Indices: 75882331--75882397 Score: 57
Period size: 23 Copynumber: 3.0 Consensus size: 23
75882321 GAGATGTTAT
75882331 TTGAATAA-T-TGTATCTCTTAC
1 TTGAATAATTATGTATCTCTTAC
* * * * *
75882352 TTCAATAATTATATTTATGTTAC
1 TTGAATAATTATGTATCTCTTAC
* *
75882375 TTGAATAATTATGTCTCTTTTAC
1 TTGAATAATTATGTATCTCTTAC
75882398 AGATAAGATT
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
21 7 0.21
22 1 0.03
23 26 0.76
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.51
Consensus pattern (23 bp):
TTGAATAATTATGTATCTCTTAC
Found at i:75884094 original size:14 final size:14
Alignment explanation
Indices: 75884075--75884105 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
75884065 TATGTGTTCA
75884075 ATTTGTTTTTAATT
1 ATTTGTTTTTAATT
75884089 ATTTGTTTTTAATT
1 ATTTGTTTTTAATT
75884103 ATT
1 ATT
75884106 AAATCCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (14 bp):
ATTTGTTTTTAATT
Found at i:75891847 original size:25 final size:21
Alignment explanation
Indices: 75891813--75891870 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 21
75891803 CAAATTAAAA
*
75891813 AAAATATATAATTATACATTAAATT
1 AAAATTTATAATTATA-ATT---TT
75891838 AAAATTTAT-A-TATAATTTT
1 AAAATTTATAATTATAATTTT
75891857 AAAATTTATAATTA
1 AAAATTTATAATTA
75891871 ACTTGAGGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
19 11 0.37
20 1 0.03
21 2 0.07
22 3 0.10
23 4 0.13
24 1 0.03
25 8 0.27
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
AAAATTTATAATTATAATTTT
Found at i:75891847 original size:27 final size:29
Alignment explanation
Indices: 75891774--75891849 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 29
75891764 TCAAAATTAA
*
75891774 AATTAAAATTTAAATTTATATAATTATATC
1 AATT-AAATTAAAATTTATATAATTATATC
*
75891804 AAATTAAA--AAAA-ATATATAATTATA-C
1 -AATTAAATTAAAATTTATATAATTATATC
75891830 -ATTAAATTAAAATTTATATA
1 AATTAAATTAAAATTTATATA
75891850 TAATTTTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
24 6 0.15
26 5 0.13
27 18 0.46
28 3 0.08
30 3 0.08
31 4 0.10
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (29 bp):
AATTAAATTAAAATTTATATAATTATATC
Found at i:75897129 original size:5 final size:6
Alignment explanation
Indices: 75897093--75897156 Score: 58
Period size: 6 Copynumber: 10.2 Consensus size: 6
75897083 CAACCCAATC
* * *
75897093 ATAAAA ATTAAAA AT-AAT TTAATAA ATAAAA ATAAAA ATTTAAAA CTAAAA
1 ATAAAA A-TAAAA ATAAAA ATAA-AA ATAAAA ATAAAA A--TAAAA ATAAAA
75897144 ATAAAA ATAAAA A
1 ATAAAA ATAAAA A
75897157 ACATATAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
5 3 0.06
6 29 0.62
7 10 0.21
8 5 0.11
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (6 bp):
ATAAAA
Found at i:75897144 original size:20 final size:21
Alignment explanation
Indices: 75897108--75897151 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
75897098 AATTAAAAAT
75897108 AATTTAATAAATAAAAATAAA
1 AATTTAATAAATAAAAATAAA
*
75897129 AATTTAA-AACTAAAAATAAA
1 AATTTAATAAATAAAAATAAA
75897149 AAT
1 AAT
75897152 AAAAAACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
AATTTAATAAATAAAAATAAA
Found at i:75897157 original size:20 final size:20
Alignment explanation
Indices: 75897119--75897158 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
75897109 ATTTAATAAA
**
75897119 TAAAAATAAAAATTTAAAAC
1 TAAAAATAAAAATAAAAAAC
75897139 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
75897159 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:75899415 original size:24 final size:24
Alignment explanation
Indices: 75899388--75899447 Score: 99
Period size: 22 Copynumber: 2.6 Consensus size: 24
75899378 TTTACGTACA
75899388 TAATAAAAAATATTTTTTTTTAAT
1 TAATAAAAAATATTTTTTTTTAAT
75899412 TAATAAAAAATA--TTTTTTTAAT
1 TAATAAAAAATATTTTTTTTTAAT
75899434 TAATAAAAAA-ATTT
1 TAATAAAAAATATTT
75899448 AGATTATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
21 1 0.03
22 20 0.59
23 1 0.03
24 12 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
TAATAAAAAATATTTTTTTTTAAT
Found at i:75902412 original size:4 final size:4
Alignment explanation
Indices: 75902403--75902427 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
75902393 AGCAAACGTG
75902403 AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA A
75902428 TAGAAAAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:75903255 original size:47 final size:47
Alignment explanation
Indices: 75903191--75903301 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
75903181 GACATTGAGT
* * *
75903191 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCAGATTTATTC
* * *
75903238 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCAGATTTATTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCAGATTTATTC
75903285 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
75903302 CTTATCCCGG
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
47 50 0.93
48 4 0.07
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCAGATTTATTC
Found at i:75905594 original size:17 final size:17
Alignment explanation
Indices: 75905572--75905606 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
75905562 AAACTGTCGA
75905572 GAAGTTATTCAAGGAAT
1 GAAGTTATTCAAGGAAT
75905589 GAAGTTATTCAAGGAAT
1 GAAGTTATTCAAGGAAT
75905606 G
1 G
75905607 TAATTTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.06, G:0.26, T:0.29
Consensus pattern (17 bp):
GAAGTTATTCAAGGAAT
Found at i:75905736 original size:630 final size:624
Alignment explanation
Indices: 75904841--75907031 Score: 2821
Period size: 630 Copynumber: 3.5 Consensus size: 624
75904831 ATATTGGTAC
* * * *
75904841 TTTTTTATTTTTGGAAACTTTGTCATAATCATCTTCCTACATGAATGAAGCTACAGAA-GGACTC
1 TTTTTTATTTTTGGAAACTTTGCCATAATCATCTTCCCACATGAATGGAGCTACAAAATGG-CTC
* * *
75904905 AATTAATGCACTTTCATAATGTCCTTTATGTTAAGAGCATAACGAAA-T-T------G----TCG
65 AATTAATGCACTTTCAGAATGTCCTTTGTGTTAGGAGCATAACGAAACTGTCGAGAAGTTATTCG
* * * *
75904958 AGAAGTTATTCAAGGAATGTAATTTTGTTAGGTAGTTTGGTTTTGATGCCATCTATCACTCAGAG
130 AGAAGTTATTCAAGGAATGTAATTTTGCTAGATAGTTTGGTTTGGATGCCATCTATCACTCAGAT
* * * * * *
75905023 TCGATGAGTTACGCCACATAACGTTGCTTCAAAATTTATAGGGTTGACTTGATATAATTGATGCT
195 TGGATGAGTTACGCCACATGACATTACTTCAAAATCTATAGGGTTGACTTGATACAATTGATGCT
* * *
75905088 ATTAATAACACAGATCACGAGTTCTCTACCTATCTTATTGTCAGCTTATGAATCATTTGGAAAGT
260 ATTAGTGACACAGATCACGAGTTATCTACCTATCTTATTGTCAGCTTATGAATCATTTGGAAAGT
*
75905153 TAAAAATGAAATGATATTTAATCATATCTCTCATAATCCTATTAGCAGTGAATTAATAATATTTC
325 TAAAAATGAAATGATATTTAATCATATCACTCATAATCCTATTAGCAGTGAATTAATAATATTTC
* * *
75905218 AACGACCATTCTCAATGTCTTCAATCAGACTAAATCTGAATGTTTTAAAGCTTAACCTCTTAAGT
390 AACGACCATTCTCAATGCCTTCAATCAGACTAAATCTGAATGTTTTAAAGCCTAACCTCCTAAGT
* *
75905283 AGATTCCCCCTATAATTTATTCTAATAGCACAACATATCATCACAATTGTGCACTACAAAATAAC
455 AGATTCCCCCTATAATTTATTCTAATAGCACAAAATATCATCACAATTGTGCCCTACAAAATAAC
75905348 AATAAAGAACACAAGAAATTTATCGAGGCTCGACAAATTACACCTGCGTCATCAAACAATACCAA
520 AATAAAGAACACAA-AAATTTATCGAGGCTCGACAAATTACACCTGCGTCATCAAACAATACCAA
*
75905413 ATATATTTGATTACAAAAGATAAAAGTGGGATTCTTATACT
584 ATATATTTCATTACAAAAGATAAAAGTGGGATTCTTATACT
* * * * * *
75905454 TTTTCTATTTTTGAAAATTTTGCCATAACCGTCTTCCCACATGAATGGAGGTACAAAATGGCTCA
1 TTTTTTATTTTTGGAAACTTTGCCATAATCATCTTCCCACATGAATGGAGCTACAAAATGGCTCA
*
75905519 ATTAATGCACTTTCAGAATGTCCTTTGTGTCAGGAGCATAACGAAACTGTCGAGAAGTTATTCAA
66 ATTAATGCACTTTCAGAATGTCCTTTGTGTTAGGAGCATAACGAAACTGTCGAGAAGTTATTC--
* * *
75905584 GGAATGAAGTTATTCAAGGAATGTAATTTTGTTAGATAGTATGGTTTGGATGCCATCTGTCACTC
129 -G-A-GAAGTTATTCAAGGAATGTAATTTTGCTAGATAGTTTGGTTTGGATGCCATCTATCACTC
75905649 AGATTGGATGAGTTACGCCACATGACATTACTTCAAAATCTATAGGGTTGACTTGATACAATTGA
191 AGATTGGATGAGTTACGCCACATGACATTACTTCAAAATCTATAGGGTTGACTTGATACAATTGA
*
75905714 TGCTATTAGTGACACAGATCACGAGTTCTCTACCTATCTTATTGTCAGCTTATGAATCATTTGGA
256 TGCTATTAGTGACACAGATCACGAGTTATCTACCTATCTTATTGTCAGCTTATGAATCATTTGGA
* * *
75905779 AAGTTAAAAATGAAATGATATTTAATCTTATCACTCATAATCCTATTAACAGTGGATTAATAATA
321 AAGTTAAAAATGAAATGATATTTAATCATATCACTCATAATCCTATTAGCAGTGAATTAATAATA
*
75905844 TTTCAACGACCATTCTCAATGCCTTCAATCAGACCAAATCTGAATGTTTTAAAGCCTAACCTCCT
386 TTTCAACGACCATTCTCAATGCCTTCAATCAGACTAAATCTGAATGTTTTAAAGCCTAACCTCCT
* *
75905909 AAGCAGATTCCCCCTATAATTTATTCTAATAGCACAATATATCATCACAATTGTGCCCTACAAAA
451 AAGTAGATTCCCCCTATAATTTATTCTAATAGCACAAAATATCATCACAATTGTGCCCTACAAAA
* * *
75905974 TAACAATAAAGAACATAAAAAATTTATCGAGGCTCAAAAAATTACACCTGCGTCATCAAACAATA
516 TAACAATAAAGAACA-CAAAAATTTATCGAGGCTCGACAAATTACACCTGCGTCATCAAACAATA
* * *
75906039 CCAAATATATTTCATTCCAAAAGATATAAGTGGGATTCTTGTACT
580 CCAAATATATTTCATTACAAAAGATAAAAGTGGGATTCTTATACT
* *
75906084 TTTTTTATTTTTGGAAACTTTGCCATAATCATCTTCCCACATGAATGGAGCTATAGAATGGCTCA
1 TTTTTTATTTTTGGAAACTTTGCCATAATCATCTTCCCACATGAATGGAGCTACAAAATGGCTCA
*
75906149 ATTAATGCACTTTCAGAATGTCCTTTGTGTTAGAAGCATAACGAAAC---C-----G----TCGA
66 ATTAATGCACTTTCAGAATGTCCTTTGTGTTAGGAGCATAACGAAACTGTCGAGAAGTTATTCGA
* *
75906202 GAAGTTATTCAAGGAATGTAATTTTGCTAGATAGTTTGGTTTGGATGCCACCTGTCACTCAGATT
131 GAAGTTATTCAAGGAATGTAATTTTGCTAGATAGTTTGGTTTGGATGCCATCTATCACTCAGATT
* * * *
75906267 AGATGAGTTACGCCACATGACATTACTTCAAAATCTATAGGGTTGACTTGATACAATTAATGTTG
196 GGATGAGTTACGCCACATGACATTACTTCAAAATCTATAGGGTTGACTTGATACAATTGATGCTA
* * * * *
75906332 TTAGTGACACAGATCACGAGTTATTTACTTATCTTATTGTCTGATTATGGATCATTTGGAAAGTT
261 TTAGTGACACAGATCACGAGTTATCTACCTATCTTATTGTCAGCTTATGAATCATTTGGAAAGTT
* *
75906397 AAAAATGAAAAGATATTTAATCATATCACTCATAATCCTATTAGCACTGAATTAATAAGT-TTTC
326 AAAAATGAAATGATATTTAATCATATCACTCATAATCCTATTAGCAGTGAATTAATAA-TATTTC
* * * * *
75906461 AATGACCATTCTAAATGCCTTCAATCAGACTAAATCT-AGTGTTTTAAAACCTAACATCCT-AGA
390 AACGACCATTCTCAATGCCTTCAATCAGACTAAATCTGAATGTTTTAAAGCCTAACCTCCTAAG-
* * * *
75906524 TAGAATCTCCCTATAATTTATTCTAATAGCACAAAATATCATCACAATTGTACCCTACAAAAAAA
454 TAGATTCCCCCTATAATTTATTCTAATAGCACAAAATATCATCACAATTGTGCCCTACAAAATAA
* * ** * *
75906589 CAATAATGAACATGAAAAATTTGA-CGAGGCTCGACAAATTATGCCTACGTCATTAAACAATACC
519 CAATAAAGAACA-CAAAAATTT-ATCGAGGCTCGACAAATTACACCTGCGTCATCAAACAATACC
*
75906653 AAATATATTTCTTTACAAAAGATAAAAGTGGGATTCTGTTATTTCAAAAATTCAAGATACT
582 AAATATATTTCATTACAAAAGATAAAAGT-GG-----G--A-TTC-----TT----ATACT
* * ** *
75906714 AGTACTTTTTTTTTTTGGAAACTTTGTCACGATCATTTTCCCACATGAATGGAGCTACAAAA-GG
1 --T--TTTTTATTTTTGGAAACTTTGCCATAATCATCTTCCCACATGAATGGAGCTACAAAATGG
* *
75906778 CTCAATTAATGCACTTTCAGAATGTCCTTTGTGTTAGGAGTATAATGAAACTGTCGAGAAGTTAT
62 CTCAATTAATGCACTTTCAGAATGTCCTTTGTGTTAGGAGCATAACGAAACTGTCGAGAAGTTAT
* *
75906843 TC----A---A-T----GAATGTAATTTTGCTAGGTAGTTTGGTTTTGATGCCATCTATCACTCA
127 TCGAGAAGTTATTCAAGGAATGTAATTTTGCTAGATAGTTTGGTTTGGATGCCATCTATCACTCA
* * ** ** * * *
75906896 AATTGGATGAGTTACGTCACATGATGTTACCGCAAAATCTACAAGGTTGACTTGATACAATTGGT
192 GATTGGATGAGTTACGCCACATGACATTACTTCAAAATCTATAGGGTTGACTTGATACAATTGAT
* * * * *
75906961 ACTATTGGTGACACAGATCACGAGTTATTTACTTATCTTATTGTCGGCTTAT-AGATCATTTGGA
257 GCTATTAGTGACACAGATCACGAGTTATCTACCTATCTTATTGTCAGCTTATGA-ATCATTTGGA
75907025 AAGTTAA
321 AAGTTAA
75907032 TAATCTTTCA
Statistics
Matches: 1392, Mismatches: 129, Indels: 94
0.86 0.08 0.06
Matches are distributed among these distances:
611 2 0.00
612 159 0.11
613 370 0.27
614 5 0.00
615 2 0.00
618 3 0.00
620 1 0.00
621 4 0.00
622 1 0.00
625 2 0.00
626 2 0.00
627 1 0.00
628 1 0.00
629 1 0.00
630 567 0.41
631 2 0.00
632 1 0.00
633 211 0.15
634 50 0.04
636 1 0.00
637 1 0.00
638 1 0.00
641 2 0.00
645 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.34
Consensus pattern (624 bp):
TTTTTTATTTTTGGAAACTTTGCCATAATCATCTTCCCACATGAATGGAGCTACAAAATGGCTCA
ATTAATGCACTTTCAGAATGTCCTTTGTGTTAGGAGCATAACGAAACTGTCGAGAAGTTATTCGA
GAAGTTATTCAAGGAATGTAATTTTGCTAGATAGTTTGGTTTGGATGCCATCTATCACTCAGATT
GGATGAGTTACGCCACATGACATTACTTCAAAATCTATAGGGTTGACTTGATACAATTGATGCTA
TTAGTGACACAGATCACGAGTTATCTACCTATCTTATTGTCAGCTTATGAATCATTTGGAAAGTT
AAAAATGAAATGATATTTAATCATATCACTCATAATCCTATTAGCAGTGAATTAATAATATTTCA
ACGACCATTCTCAATGCCTTCAATCAGACTAAATCTGAATGTTTTAAAGCCTAACCTCCTAAGTA
GATTCCCCCTATAATTTATTCTAATAGCACAAAATATCATCACAATTGTGCCCTACAAAATAACA
ATAAAGAACACAAAAATTTATCGAGGCTCGACAAATTACACCTGCGTCATCAAACAATACCAAAT
ATATTTCATTACAAAAGATAAAAGTGGGATTCTTATACT
Found at i:75916923 original size:18 final size:18
Alignment explanation
Indices: 75916901--75916983 Score: 62
Period size: 18 Copynumber: 4.6 Consensus size: 18
75916891 TTTTAGAATT
75916901 TTTTTTAAATTTTAT-AA
1 TTTTTTAAATTTTATAAA
* *
75916918 TTTTTTAAAATATATAAA
1 TTTTTTAAATTTTATAAA
* ** *
75916936 ATTTGGAATTTTTATAAA
1 TTTTTTAAATTTTATAAA
* *
75916954 TATTTTGAATTTTA-AAA
1 TTTTTTAAATTTTATAAA
75916971 TTTATTTTAAATT
1 -TT-TTTTAAATT
75916984 ATTCTGTAAT
Statistics
Matches: 47, Mismatches: 16, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
17 16 0.34
18 23 0.49
19 8 0.17
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (18 bp):
TTTTTTAAATTTTATAAA
Found at i:75916933 original size:17 final size:17
Alignment explanation
Indices: 75916901--75916934 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
75916891 TTTTAGAATT
* *
75916901 TTTTTTAAATTTTATAA
1 TTTTTTAAAATATATAA
75916918 TTTTTTAAAATATATAA
1 TTTTTTAAAATATATAA
75916935 AATTTGGAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTTTAAAATATATAA
Found at i:75916958 original size:19 final size:18
Alignment explanation
Indices: 75916930--75916966 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
75916920 TTTTAAAATA
75916930 TATAAAATTTGGAATTTT
1 TATAAAATTTGGAATTTT
*
75916948 TATAAATATTTTGAATTTT
1 TATAAA-ATTTGGAATTTT
75916967 AAAATTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (18 bp):
TATAAAATTTGGAATTTT
Found at i:75918646 original size:8 final size:9
Alignment explanation
Indices: 75918625--75918649 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
75918615 TTGAAAGTTA
75918625 AAAAATTTT
1 AAAAATTTT
75918634 AAAAATTTT
1 AAAAATTTT
75918643 AAAAATT
1 AAAAATT
75918650 GGTAGACCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AAAAATTTT
Found at i:75929607 original size:26 final size:24
Alignment explanation
Indices: 75929567--75929626 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
75929557 TTATTTCATT
* * *
75929567 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
75929591 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
75929617 AAATAAATAT
1 AAATAAATAT
75929627 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:75929638 original size:22 final size:22
Alignment explanation
Indices: 75929597--75929655 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
75929587 ATAATAAATC
* *
75929597 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
75929617 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
75929639 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
75929656 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:75929732 original size:15 final size:16
Alignment explanation
Indices: 75929702--75929734 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
75929692 AAATAGTTAT
75929702 ATTAAAAACTTAAAATA
1 ATTAAAAAC-TAAAATA
75929719 ATTAAAAA-TAAAATA
1 ATTAAAAACTAAAATA
75929734 A
1 A
75929735 AAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (16 bp):
ATTAAAAACTAAAATA
Found at i:75930845 original size:12 final size:12
Alignment explanation
Indices: 75930824--75930858 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
75930814 TGGCCCCCCG
75930824 TATTAATTTTTA
1 TATTAATTTTTA
*
75930836 TATTACTTTTTA
1 TATTAATTTTTA
75930848 TA-TAATTTTTA
1 TATTAATTTTTA
75930859 AATATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 8 0.38
12 13 0.62
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (12 bp):
TATTAATTTTTA
Found at i:75931992 original size:27 final size:27
Alignment explanation
Indices: 75931921--75931986 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
75931911 AGAGCCATTA
* *
75931921 ATCGAGAAGCTCATGAGAAAGCCTTTT
1 ATCGGGAAGCTCATGAGAAAGCCTTTG
*
75931948 ATCAGGAAGCTCATGAGAAAGCCTTTG
1 ATCGGGAAGCTCATGAGAAAGCCTTTG
75931975 ATCGGGAAGCTC
1 ATCGGGAAGCTC
75931987 CGGAGAGCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.23
Consensus pattern (27 bp):
ATCGGGAAGCTCATGAGAAAGCCTTTG
Found at i:75932130 original size:25 final size:25
Alignment explanation
Indices: 75931871--75932143 Score: 134
Period size: 25 Copynumber: 10.8 Consensus size: 25
75931861 GCAAGCCAAA
* * *
75931871 TATCGAGAAGCTCATGCGAGCC-AA
1 TATCGGGAAGCTCATGAGAGCCTAT
* *
75931895 TATCGGGTAGCTCCA-AAGAGCC-AT
1 TATCGGGAAGCT-CATGAGAGCCTAT
* *
75931919 TAATCGAGAAGCTCATGAGAAAGCCTTT
1 T-ATCGGGAAGCTCATGAG--AGCCTAT
*
75931947 TATCAGGAAGCTCATGAGAAAGCCT-T
1 TATCGGGAAGCTCATGAG--AGCCTAT
**
75931973 TGATCGGGAAGCTCCGGAGAG-CTAAT
1 T-ATCGGGAAGCTCATGAGAGCCT-AT
*
75931999 TATTGGGAAGCTCAT-ACGAGCC-AT
1 TATCGGGAAGCTCATGA-GAGCCTAT
* * * *
75932023 AAACGGGAAGCTTAAGAGAGCC-AT
1 TATCGGGAAGCTCATGAGAGCCTAT
**
75932047 TAATCGGGAAGCTTGTGAGAGCCATAT
1 T-ATCGGGAAGCTCATGAGAGCC-TAT
* * * *
75932074 AAT-GGGATGCTTATGAGAG-CTAAA
1 TATCGGGAAGCTCATGAGAGCCT-AT
* *
75932098 TAACGGGAAGCTCGTGAGAGCCTAT
1 TATCGGGAAGCTCATGAGAGCCTAT
* * *
75932123 TATTGGGATGCTCATAAGAGC
1 TATCGGGAAGCTCATGAGAGC
75932144 TGTGGTGTGT
Statistics
Matches: 190, Mismatches: 41, Indels: 35
0.71 0.15 0.13
Matches are distributed among these distances:
23 1 0.01
24 44 0.23
25 92 0.48
26 9 0.05
27 42 0.22
28 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.22
Consensus pattern (25 bp):
TATCGGGAAGCTCATGAGAGCCTAT
Found at i:75932493 original size:21 final size:21
Alignment explanation
Indices: 75932469--75932511 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
75932459 AATGAATTTA
* *
75932469 ACTCAATTTAATACAATTCAT
1 ACTCAATTCAATACAATACAT
*
75932490 ACTCAATTCAATCCAATACAT
1 ACTCAATTCAATACAATACAT
75932511 A
1 A
75932512 TCTTTGGCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (21 bp):
ACTCAATTCAATACAATACAT
Found at i:75936451 original size:35 final size:35
Alignment explanation
Indices: 75936384--75936551 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
75936374 TCCTCATTGA
*** *
75936384 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
75936420 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
75936460 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
75936495 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
75936530 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
75936552 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
35 74 0.63
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:75936510 original size:75 final size:73
Alignment explanation
Indices: 75936379--75936551 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 73
75936369 GGTTTTCCTC
*** * * **
75936379 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
75936444 TCAGTATGG
65 TCAGTATGG
*
75936453 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
75936517 ACTCAGTATGG
63 ACTCAGTATGG
75936528 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
75936552 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 4 0.05
75 46 0.52
76 15 0.17
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:75937959 original size:13 final size:14
Alignment explanation
Indices: 75937938--75937966 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
75937928 TGAAAAATGA
75937938 ATTAGAAAATATTT
1 ATTAGAAAATATTT
75937952 ATTA-AAAATATTT
1 ATTAGAAAATATTT
75937965 AT
1 AT
75937967 GAAGTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:75941423 original size:38 final size:39
Alignment explanation
Indices: 75941339--75941473 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
75941329 ACCAATATGG
*
75941339 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
75941378 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
75941416 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
75941457 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
75941474 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:75941667 original size:16 final size:15
Alignment explanation
Indices: 75941640--75941669 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
75941630 CACTTTTCAA
75941640 ATAATTACATATTCC
1 ATAATTACATATTCC
75941655 ATAATTCACATATTC
1 ATAATT-ACATATTC
75941670 AATTCAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (15 bp):
ATAATTACATATTCC
Found at i:75943062 original size:5 final size:5
Alignment explanation
Indices: 75943044--75943074 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
75943034 TTTCTTTTAT
75943044 ATATA ATAATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA
75943075 CTTAATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:75959400 original size:13 final size:14
Alignment explanation
Indices: 75959384--75959419 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
75959374 CAATCTCATA
75959384 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
75959397 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
75959410 TCTC-ATTTCA
1 TCTCAATTTCA
75959420 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:75959409 original size:18 final size:19
Alignment explanation
Indices: 75959371--75959411 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
75959361 TGGTTCATGT
75959371 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
75959390 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
75959408 TTTC
1 TTTC
75959412 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:75959600 original size:21 final size:21
Alignment explanation
Indices: 75959575--75959659 Score: 80
Period size: 21 Copynumber: 4.0 Consensus size: 21
75959565 TGATCAGTAT
*
75959575 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
75959596 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* *
75959617 ACGACACACGAGGTGCCTGAAA
1 ACGACACACAAAGTGCCT-AAA
*
75959639 TACGACACATAAAGTGCCTAA
1 -ACGACACACAAAGTGCCTAA
75959660 TCAGTAAAGC
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 34 0.65
22 3 0.06
23 15 0.29
ACGTcount: A:0.39, C:0.26, G:0.21, T:0.14
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:75959625 original size:23 final size:22
Alignment explanation
Indices: 75959573--75959647 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 22
75959563 CCTGATCAGT
** *
75959573 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
*
75959594 AAACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
75959615 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTG-A
75959638 ATACGACACA
1 ATACGACACA
75959648 TAAAGTGCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 36 0.78
23 10 0.22
ACGTcount: A:0.39, C:0.27, G:0.21, T:0.13
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:75960055 original size:15 final size:15
Alignment explanation
Indices: 75960030--75960087 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
75960020 TCATATATAT
*
75960030 TATATAATTCAAACAA
1 TATA-AATTCAATCAA
75960046 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
75960061 AATAATTTCAATCAA
1 TATAAATTCAATCAA
75960076 TATAAATTCAAT
1 TATAAATTCAAT
75960088 AAAACAGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 33 0.89
16 4 0.11
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:75960077 original size:30 final size:28
Alignment explanation
Indices: 75960033--75960091 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 28
75960023 TATATATTAT
75960033 ATAATTCAAACAATATAAATTCAATCAAA
1 ATAATTCAAACAATATAAATTCAAT-AAA
*
75960062 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAA-TTCAAACAATATAAATTCAATAAA
75960091 A
1 A
75960092 CAGATATTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 8 0.29
30 20 0.71
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.31
Consensus pattern (28 bp):
ATAATTCAAACAATATAAATTCAATAAA
Found at i:75960250 original size:2 final size:2
Alignment explanation
Indices: 75960243--75960270 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
75960233 ATATTTCATT
75960243 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
75960271 TATATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:75960275 original size:2 final size:2
Alignment explanation
Indices: 75960270--75960313 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
75960260 ACACACACAC
*
75960270 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75960311 AT A
1 AT A
75960314 ATTCAATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75961116 original size:13 final size:13
Alignment explanation
Indices: 75961098--75961122 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75961088 CTTTTTATTA
75961098 TTTTGTTTCTTTC
1 TTTTGTTTCTTTC
75961111 TTTTGTTTCTTT
1 TTTTGTTTCTTT
75961123 TATATATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.80
Consensus pattern (13 bp):
TTTTGTTTCTTTC
Found at i:75976424 original size:68 final size:68
Alignment explanation
Indices: 75976310--75976444 Score: 225
Period size: 68 Copynumber: 2.0 Consensus size: 68
75976300 TACTATTGAT
* * *
75976310 AGAGTTAAGGTGATAGAGTGGATGATATTCGACAAAAGTGATTTAATGACAAAAATATTATATGA
1 AGAGTTAAGGTGATAGAATGGATGATATTCGACAAAAATGACTTAATGACAAAAATATTATATGA
75976375 CGA
66 CGA
* *
75976378 AGAGTTACGGTGATAGAATGGATGATATTCGATAAAAATGACTTAATGACAAAAATATTATATGA
1 AGAGTTAAGGTGATAGAATGGATGATATTCGACAAAAATGACTTAATGACAAAAATATTATATGA
75976443 CG
66 CG
75976445 GACGTGAAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.43, C:0.07, G:0.22, T:0.28
Consensus pattern (68 bp):
AGAGTTAAGGTGATAGAATGGATGATATTCGACAAAAATGACTTAATGACAAAAATATTATATGA
CGA
Found at i:75978486 original size:14 final size:14
Alignment explanation
Indices: 75978462--75978497 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
75978452 TAGTCATTAA
75978462 TATTTATATATTTTT
1 TATTTA-ATATTTTT
75978477 TATTTAATATTTTT
1 TATTTAATATTTTT
*
75978491 TAGTTAA
1 TATTTAA
75978498 ATATAGCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 14 0.70
15 6 0.30
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (14 bp):
TATTTAATATTTTT
Found at i:75978491 original size:16 final size:15
Alignment explanation
Indices: 75978462--75978492 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
75978452 TAGTCATTAA
75978462 TATTTATATATTTTT
1 TATTTATATATTTTT
75978477 TATTTA-ATATTTTT
1 TATTTATATATTTTT
75978491 TA
1 TA
75978493 GTTAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTATATATTTTT
Found at i:75979348 original size:2 final size:2
Alignment explanation
Indices: 75979341--75979366 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
75979331 TTTGATTCAC
75979341 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
75979367 GCATTTCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75980486 original size:15 final size:15
Alignment explanation
Indices: 75980466--75980512 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
75980456 TGCTTCAGAA
75980466 TATATTTTAGTCATT
1 TATATTTTAGTCATT
**
75980481 TATA-TTTA-AAATTT
1 TATATTTTAGTCA-TT
75980495 TATATTTTAGTCATT
1 TATATTTTAGTCATT
75980510 TAT
1 TAT
75980513 GTTATCGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
13 1 0.04
14 10 0.40
15 13 0.52
16 1 0.04
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (15 bp):
TATATTTTAGTCATT
Found at i:75980663 original size:14 final size:15
Alignment explanation
Indices: 75980636--75980664 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
75980626 GTTGGGATGA
75980636 AAATAAATTTTAATT
1 AAATAAATTTTAATT
75980651 AAATAAA-TTTAATT
1 AAATAAATTTTAATT
75980665 TAGATTGCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AAATAAATTTTAATT
Found at i:75982325 original size:401 final size:398
Alignment explanation
Indices: 75981842--75985545 Score: 2514
Period size: 407 Copynumber: 9.2 Consensus size: 398
75981832 ATATCCAAAT
* *
75981842 ACGGATTGGGTTGAGTGTTATTTGATAAATGAATTGTAATTACCATTTCTAGTCATCTATTAAAA
1 ACGGATTGGGTTGAGTGTCATTTGATAAATG-ATTGTAATTACCATTTTTAGTCATCTATTAAAA
* * * * *
75981907 GCTAATAGCCTTTACTCTAGACTACCATGAGGCTAATAGCAAATCATAGTCTTTATTCATGTAAG
65 GCTAATAGTCGTTACTCTAGACTACCATAAGGTTAATAACAAATCATAGTCTTTATTCATGTAAG
* * * *
75981972 ATGTCAATTATAATCAACCTCATGTGAGAGTAGTCTAATCAATATGTTAAGTTTTCAAATTTTGA
130 ATGTCAATTATAGTCAACCTCATGTGAGAGTAGTCTAAT-AACATGTCAAGTTTTAAAATTTTGA
* * * * ** * * * * *
75982037 TGAAAATATTAATAATTTTAGTGA-TGAGACTATGATTTTTTTAATTAGAAGAGTGATATGGCTT
194 TGAAAATACTAATAATTTT-GTGACGGAGA-TATGA-TTCTTAAACCAGAAAAGCGAGAGGGCAT
* **
75982101 AAGTTTTAACCA-TTTAAGTATAAAAACTAAATTTTAAATCTTTTCTAAGTATAATG-ACTGATA
256 AAGTTTTAACCATTTTAA-TATAAAAACTAAATTTTAAATCTTATCTAAGTATAA-GCACCAATA
** **
75982164 ACA-ATTTTTTTTAGAATAACAAAAGAAATTCCAAATTGCATGTTTTAACC-A-AAAAATAACAT
319 ACACA--TTTTTTAGAATAACAAAAGAAATGACAAATAACATGTTTTAACCAAGAAAAATAACAT
*
75982226 TAACAATGGTATCGAAC
382 TAACAATGGTAGCGAAC
* * * * *
75982243 ACGGATTGGTTTGAGTGTCATTTGATAAATGATCTATAACTATCATTTTTTGTCATCTATTAAAA
1 ACGGATTGGGTTGAGTGTCATTTGATAAATGAT-TGTAATTACCATTTTTAGTCATCTATTAAAA
* * * *
75982308 GCCAATAGTCGTTACTCTAGACTACCATAAGGTTAATACCACATCATCGTCTTTCA-TCATGTAA
65 GCTAATAGTCGTTACTCTAGACTACCATAAGGTTAATAACAAATCATAGTCTTT-ATTCATGTAA
* * * * * *
75982372 CATGCCAATTATAGTAAAACTCATGTGAGAGTAGTCTAATAACATGTCAAGTTTGAAAATTTTAA
129 GATGTCAATTATAGTCAACCTCATGTGAGAGTAGTCTAATAACATGTCAAGTTTTAAAATTTTGA
* * * * *
75982437 TGAAAATACTAATAATTTTTTTACGGGGATGTGATTCTTAAACCAGAAAAGCGAGAGGGCATATG
194 TGAAAATACTAATAATTTTGTGACGGAGATATGATTCTTAAACCAGAAAAGCGAGAGGGCATAAG
* * * *
75982502 TTTTAGCCATTTTAATATATAGATTAAATTTTAAATCTTATCTAAGTATAAGCACCAATAACACA
259 TTTTAACCATTTTAATATAAAAACTAAATTTTAAATCTTATCTAAGTATAAGCACCAATAACACA
* * * **
75982567 TTTTTTATAATAACAAAAGAAATGACTAATAATATGTTTTAACCAAGTAAAAATAACATTAATGA
324 TTTTTTAGAATAACAAAAGAAATGACAAATAACATGTTTTAACCAAG-AAAAATAACATTAACAA
75982632 TGGTAGCGAAC
388 TGGTAGCGAAC
** *
75982643 ACAAATTGGGTTGAGTGTCATTTGATAAATGATATGTAATTACCATTTTTAGCCATCT-TCTAAA
1 ACGGATTGGGTTGAGTGTCATTTGATAAATGAT-TGTAATTACCATTTTTAGTCATCTAT-TAAA
* * * * * * *
75982707 AGCTAATAGTTGTTACTCTAGATTACCATAACGTTAATAACATATCATGGTTTTTTTTCATGTAA
64 AGCTAATAGTCGTTACTCTAGACTACCATAAGGTTAATAACAAATCATAGTCTTTATTCATGTAA
* * *
75982772 GATGTCAATTATAGTCAACCTCATGTGAGAGTAGTCTAATAAACATGTCAAGTTTTTATATCTTG
129 GATGTCAATTATAGTCAACCTCATGTGAGAGTAGTCTAAT-AACATGTCAAGTTTTAAAATTTTG
* * * * * *
75982837 ATGAAAATACCAATAATTTT-T-------A-A--A--C-T-----AGAAAAACGAAATGGCTTAT
193 ATGAAAATACTAATAATTTTGTGACGGAGATATGATTCTTAAACCAGAAAAGCGAGAGGGCATAA
* * * * * * * *
75982883 GTTTTAGCCA-TTTAAGTATTATATACTAAAATTTAAGTCTGATCTAAGTATATGGACCAATAAC
258 GTTTTAACCATTTTAA-TA-TAAAAACTAAATTTTAAATCTTATCTAAGTATAAGCACCAATAAC
* * * * * ** * *
75982947 ATATTTTTTTATAATAACGAAAGAAA-AAAATAATAGTATGTTTTAACCAATTAAAAATAACATC
321 ACA-TTTTTTAGAATAACAAAAGAAATGACA-AATAACATGTTTTAACCAA-GAAAAATAACATT
* * * *
75983011 AATAATGGTAACCAAT
383 AACAATGGTAGCGAAC
* * * * * *
75983027 GCAGATTGGGTTGAGTATCATTTGATAAATGATATGTAATTACTATTTTTAGCCATGTATTAAAA
1 ACGGATTGGGTTGAGTGTCATTTGATAAATGAT-TGTAATTACCATTTTTAGTCATCTATTAAAA
* ** ** * * *
75983092 GCTAATAGTAGTTACTCTAGACTACCATATTGTTAATATTATATCATAGTCTTTCTTCATGTTAG
65 GCTAATAGTCGTTACTCTAGACTACCATAAGGTTAATAACAAATCATAGTCTTTATTCATGTAAG
* * * * **
75983157 ATGTCAAATACAGTCAATCTCATGTGAGAGTAGGCTAATTAACATGTCAAGTTCGAAAATTTTGA
130 ATGTCAATTATAGTCAACCTCATGTGAGAGTAGTCTAA-TAACATGTCAAGTTTTAAAATTTTGA
* * * * * * * * * * *
75983222 TGAAAATACCAATACTTTTACTCATGG-GATGTGATTTTTAAACGAGAAAAGCAAGAGGGCTTAT
194 TGAAAATACTAATAATTTT-GTGACGGAGATATGATTCTTAAACCAGAAAAGCGAGAGGGCATAA
* * * * * * * ** *
75983286 GTTTTAGCCA-TTTAAGTTTATAGACTAAAGTTTAAGTATTATCTAAGTATAAATATCAATAACA
258 GTTTTAACCATTTTAA-TATAAAAACTAAATTTTAAATCTTATCTAAGTATAAGCACCAATAACA
* * * ** * * *
75983350 TGTATTTTTTTATAATAACCAAAGAAACAACTAATAGCATGTTTTAACCAAATAAAAATAACA-T
322 --CA-TTTTTTAGAATAACAAAAGAAATGACAAATAACATGTTTTAACC-AAGAAAAATAACATT
* * *
75983414 CACTAATGGTAGCCAAT
383 AAC-AATGGTAGCGAAC
* * * * * *
75983431 GCGTAATGGGTTGAGTGTCATTTGTTAAATGATCTGTAAATACCATTTTTAGCCATCTATTAAAA
1 ACGGATTGGGTTGAGTGTCATTTGATAAATGAT-TGTAATTACCATTTTTAGTCATCTATTAAAA
* * * * * * * * *
75983496 ACTAATAGTCGTCACTCTAGACAATCATAAGGTTAATATCATATCAGAGTCTTTCTTCACGTAAG
65 GCTAATAGTCGTTACTCTAGACTACCATAAGGTTAATAACAAATCATAGTCTTTATTCATGTAAG
* * * *
75983561 ATGTCAATTATAGTTAAACTCATGTGAGAGTAGTCTAAATAACATGTCAAGTTTGT-AAATATCG
130 ATGTCAATTATAGTCAACCTCATGTGAGAGTAGTCT-AATAACATGTCAAGTTT-TAAAATTTTG
* * * * * * * * * * **
75983625 ATGAAAATACCAATAATTTTACTCATGGGGCTATGATTTTTAAACTACAAAAGCAAGAGGGTTTA
193 ATGAAAATACTAATAATTTT-GTGACGGAGATATGATTCTTAAACCAGAAAAGCGAGAGGGCATA
* * * * * *
75983690 TGTTTTAGA-CA-TTTAAGTTTATAGACTAAATTTTAAATATTATCTAAGTATAAAG-ACGAATA
257 AGTTTTA-ACCATTTTAA-TATAAAAACTAAATTTTAAATCTTATCTAAGTAT-AAGCACCAATA
** * ** ** * * * *
75983752 ACATTTTTTTTATAATAATGAAAGAAACAACTAATATCGTGTTTTAACCAAATAAAAATAACATT
319 ACACATTTTTTAGAATAACAAAAGAAATGACAAATAACATGTTTTAACC-AAGAAAAATAACATT
* *
75983817 AATAATGGTAGTC-TAC
383 AACAATGGTAG-CGAAC
* * * * *
75983833 GCTGACTGGGTTGAGTGTCATTTG-TAAAATAATCTGTAATTACCATTTTTAGCCATCTATTAAA
1 ACGGATTGGGTTGAGTGTCATTTGAT-AAATGAT-TGTAATTACCATTTTTAGTCATCTATTAAA
* * ** * *
75983897 AGCTAATAGCCGTTACTCTAGACTACCATAACGTTAATATTATATCATAGTCTTTCTTCATGTAA
64 AGCTAATAGTCGTTACTCTAGACTACCATAAGGTTAATAACAAATCATAGTCTTTATTCATGTAA
* * * * *
75983962 GATGTCAATTATAGTCAATCTCATGTGAGAGTAGGCTAATTAACATGTCAAGTTTGAAATTTTTT
129 GATGTCAATTATAGTCAACCTCATGTGAGAGTAGTCTAA-TAACATGTCAAGTTTTAAAATTTTG
* * * * * ** *
75984027 ATGAAAATACTAATAATTTTACTCATGG-GATGTGATTTTTAAATGAGAAAAAGCGAGGGAGAGC
193 ATGAAAATACTAATAATTTT-GTGACGGAGATATGATTCTTAAACCAG-AAAAGCGA--GAGGGC
* * ** * * * *
75984091 TTATGTTTTAGGCA-TTTAAGTTTATAGACTAAATTTTAAATATTATCTAAGTATAAAG-ACCAA
254 ATAAGTTTTAACCATTTTAA-TATAAAAACTAAATTTTAAATCTTATCTAAGTAT-AAGCACCAA
* * * ** * ** * * * *
75984154 TAACATATATTTTTCTATAATAACCAAAGAAACAACTAATTGCAAGATTTAACCAATAAAAAAAA
317 TAAC--ACATTTTT-TAGAATAACAAAAGAAATGACAAATAACATGTTTTAACCAA-GAAAAATA
* * * *
75984219 ACATCAATAATGGTAACCAAC
378 ACATTAACAATGGTAGCGAAC
* ** * * *
75984240 GCATATTGGGTTGAGTGTCATTTGATAAATAATCTGTAATTATCATTTTTAGCCATCTATTAAAA
1 ACGGATTGGGTTGAGTGTCATTTGATAAATGAT-TGTAATTACCATTTTTAGTCATCTATTAAAA
* * * * * * *
75984305 GCTAATAGCCGTTACTTTAGACTACCATAATGTTAATATCATATCATGGTCTTTCTTCATGTAAG
65 GCTAATAGTCGTTACTCTAGACTACCATAAGGTTAATAACAAATCATAGTCTTTATTCATGTAAG
* * * * * *
75984370 ATGTTAATTATAGTCAACC-CAATGTGAGAGTAGTTTAATTAAGATGTAAACTTTTTAAATTTTG
130 ATGTCAATTATAGTCAACCTC-ATGTGAGAGTAGTCTAA-TAACATGTCAAGTTTTAAAATTTTG
* * * * * * * ** * * *
75984434 ATGAAAATACCAATAATTTTACTGATGGGGCTTTGATTTTTAAATTAGTAAAGCGATAGGGCTTA
193 ATGAAAATACTAATAATTTT-GTGACGGAGATATGATTCTTAAACCAGAAAAGCGAGAGGGCATA
* * * * *
75984499 TGTTTTAGCCA-TTTAAGTATATAGACTAAATTTTAAATCTTATTTAAGTATAAATAGCAATAAC
257 AGTTTTAACCATTTTAA-TATAAAAACTAAATTTTAAATCTTATCTAAGTAT--A-AGC----AC
* * * * **
75984563 ATATATATATATATATATATATATATTGGTAATAACAAAAAAAAAAAACAACAACTAATAGCATG
314 -CA-ATA-ACACAT-T-T-T-T-TA---G-AATAAC-AAAAGAAATGAC-A-AA-T-A-A-CATG
* * * *
75984628 TTTTAA-CAAAAAAAAT-ACATCAATAATTGTAG-GCAAC
360 TTTTAACCAAGAAAAATAACATTAACAATGGTAGCG-AAC
* * *
75984665 GCGGATTGGGTTGAGTGTCATTTGTTAAATGATCTGTAATTACCATTTTCTAGCCATCTATTAAA
1 ACGGATTGGGTTGAGTGTCATTTGATAAATGAT-TGTAATTACCATTTT-TAGTCATCTATTAAA
** * * * * *
75984730 AGCTAATAACCGTTACTCTAGACTACCAAAATGTTAATATCATATCATAGTCTTTCTTCATGTAA
64 AGCTAATAGTCGTTACTCTAGACTACCATAAGGTTAATAACAAATCATAGTCTTTATTCATGTAA
* * * *
75984795 GATGTCAATTATAGTTAACTTCGTGTGAGAGTAGTCTAATTAACATGTCAAGTTTTTAAATTTTG
129 GATGTCAATTATAGTCAACCTCATGTGAGAGTAGTCTAA-TAACATGTCAAGTTTTAAAATTTTG
* * *** * * ** * * *
75984860 ACT-AAAATACTAATAATTTTACTAAAAAAGCTGTGACTT-TTAAATTAGGAAAGTGAGA-GGCC
193 A-TGAAAATACTAATAATTTT-GTGACGGAGATATGA-TTCTTAAACCAGAAAAGCGAGAGGGCA
* * * *
75984922 TAATGTTTTAACTA-TTTAAGTATGAAGACTAAATTTTAAATCTTATCTAACTATAATG-ACCAA
255 TAA-GTTTTAACCATTTTAA-TATAAAAACTAAATTTTAAATCTTATCTAAGTATAA-GCACCAA
* * * * ** ** *
75984985 TGACATATTTTTTTTTTTATAATAACGAAAGAAACAATTAATAACATGTTTTAACCAAGTAAAAG
317 TAACACA-----TTTTTTAGAATAACAAAAGAAATGACAAATAACATGTTTTAACCAAG-AAAAA
* * * ** * *
75985050 GAACATGAAAAATGACATCAAAC
376 TAACATTAACAATGGTAGCGAAC
* ** * * *
75985073 ACGAATTCAGTCGAGTGTCATTTGATTAATGATCTGTAATTACCATTTTTAGCCATCTATTAAAA
1 ACGGATTGGGTTGAGTGTCATTTGATAAATGAT-TGTAATTACCATTTTTAGTCATCTATTAAAA
* ** * *
75985138 GCTTATAGTCGTTACTCTAGACTACCATAAGGTTAATAGTATATCATAGTCTTTCTTCATGTAAG
65 GCTAATAGTCGTTACTCTAGACTACCATAAGGTTAATAACAAATCATAGTCTTTATTCATGTAAG
* * * * * *
75985203 ATGTCAATTATAGTCAAACTCATGTGAGTGCAATCTAATTAACAAGTCAAGTTTGT-AAATCTTG
130 ATGTCAATTATAGTCAACCTCATGTGAGAGTAGTCTAA-TAACATGTCAAGTTT-TAAAATTTTG
* * * * * * * * ** *
75985267 ATGAAAATACTAATAATTTTACTGATGGGGCTGTGATTTTTAAACAACAAAAATGAGAGGGCTTA
193 ATGAAAATACTAATAATTTT-GTGACGGAGATATGATTCTTAAACCAGAAAAGCGAGAGGGCATA
* * * * * * * *
75985332 TGTTTTAGCCA-TTTAAGTATAGAGACTTAATTTTTAATATTATCTAAGTATAAAG-ATCAATAA
257 AGTTTTAACCATTTTAA-TATAAAAACTAAATTTTAAATCTTATCTAAGTAT-AAGCACCAAT-A
* * * * * * * *
75985395 TATATATTTTTTATAATAATAAAAGAAA-GAACTAATAGCATGTTTTAAACAAATAAAAATAACA
319 -ACACATTTTTTAGAATAACAAAAGAAATG-ACAAATAACATGTTTT-AACCAAGAAAAATAACA
* * *
75985459 TCAATAATGGTAGCAAAC
381 TTAACAATGGTAGCGAAC
* * **
75985477 GCGGATTGGGTTGAGTGTCATTTGATAAATTATCTGTAATTACCATTTTTACCCATCTATTAAAA
1 ACGGATTGGGTTGAGTGTCATTTGATAAATGAT-TGTAATTACCATTTTTAGTCATCTATTAAAA
75985542 GCTA
65 GCTA
75985546 CTAGCCTCCA
Statistics
Matches: 2764, Mismatches: 424, Indels: 227
0.81 0.12 0.07
Matches are distributed among these distances:
381 5 0.00
382 28 0.01
383 41 0.01
384 247 0.09
385 2 0.00
386 1 0.00
387 1 0.00
388 1 0.00
390 1 0.00
392 1 0.00
393 1 0.00
395 1 0.00
397 38 0.01
398 71 0.03
399 13 0.00
400 213 0.08
401 199 0.07
402 302 0.11
403 38 0.01
404 434 0.16
405 161 0.06
406 22 0.01
407 483 0.17
408 81 0.03
409 6 0.00
411 8 0.00
412 8 0.00
413 5 0.00
414 4 0.00
415 2 0.00
416 7 0.00
417 6 0.00
418 2 0.00
419 3 0.00
420 1 0.00
421 7 0.00
422 9 0.00
423 1 0.00
424 4 0.00
425 67 0.02
426 224 0.08
427 7 0.00
428 8 0.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (398 bp):
ACGGATTGGGTTGAGTGTCATTTGATAAATGATTGTAATTACCATTTTTAGTCATCTATTAAAAG
CTAATAGTCGTTACTCTAGACTACCATAAGGTTAATAACAAATCATAGTCTTTATTCATGTAAGA
TGTCAATTATAGTCAACCTCATGTGAGAGTAGTCTAATAACATGTCAAGTTTTAAAATTTTGATG
AAAATACTAATAATTTTGTGACGGAGATATGATTCTTAAACCAGAAAAGCGAGAGGGCATAAGTT
TTAACCATTTTAATATAAAAACTAAATTTTAAATCTTATCTAAGTATAAGCACCAATAACACATT
TTTTAGAATAACAAAAGAAATGACAAATAACATGTTTTAACCAAGAAAAATAACATTAACAATGG
TAGCGAAC
Found at i:75984307 original size:407 final size:402
Alignment explanation
Indices: 75982852--75985551 Score: 3091
Period size: 407 Copynumber: 6.6 Consensus size: 402
75982842 AATACCAATA
* * * * *
75982852 ATTTTTAAACT-AGAAAAACGAAATGGCTTATGTTTTAGCCATTTAAGTATTATATACTAAAATT
1 ATTTTTAAA-TGAGAAAAGCGAGAGGGCTTATGTTTTAGCCATTTAAGT-TTATAGACTAAATTT
* * * ** * *
75982916 TAAGTCTGATCTAAGTATATGGACCAATAACATAT-TTTTTTATAATAACGAAAGAAAAAAATAA
64 TAAATATTATCTAAGTATAAAGACCAATAACATATATTTTTTATAATAACGAAAGAAACAACTAA
* * * * *
75982980 TAGTATGTTTTAACCAATTAAAAATAACATCAATAATGGTAACCAATGCAGATTGGGTTGAGTAT
129 TAGCATGTTTTAACCAATAAAAAATAACATCAATAATGGTAGCCAACGCAGATTGGGTTGAGTGT
* * * **
75983045 CATTTGATAAATGATATGTAATTACTATTTTTAGCCATGTATTAAAAGCTAATAGTAGTTACTCT
194 CATTTGATAAATGATCTGTAATTACCATTTTTAGCCATCTATTAAAAGCTAATAGCCGTTACTCT
* * * * *
75983110 AGACTACCATATTGTTAATATTATATCATAGTCTTTCTTCATGTTAGATGTCAAATACAGTCAAT
259 AGACTACCATAATGTTAATATCATATCATAGTCTTTCTTCATGTAAGATGTCAATTATAGTCAA-
* * *
75983175 CTCATGTGAGAGTAGGCTAATTAACATGTCAAGTTCGAAAATTTTGATGAAAATACCAATACTTT
323 CTCATGTGAGAGTAGTCTAATTAACATGTCAAGTTTG-AAATTTTGATGAAAATACCAATAATTT
*
75983240 TACTCAT-GGGATGTG
387 TACTCATGGGGCTGTG
* * *
75983255 ATTTTTAAACGAGAAAAGCAAGAGGGCTTATGTTTTAGCCATTTAAGTTTATAGACTAAAGTTTA
1 ATTTTTAAATGAGAAAAGCGAGAGGGCTTATGTTTTAGCCATTTAAGTTTATAGACTAAATTTTA
* * * * *
75983320 AGTATTATCTAAGTATAAATATCAATAACATGTATTTTTTTATAATAACCAAAGAAACAACTAAT
66 AATATTATCTAAGTATAAAGACCAATAACATATA-TTTTTTATAATAACGAAAGAAACAACTAAT
* * *
75983385 AGCATGTTTTAACCAA-ATAAAAATAACATCACTAATGGTAGCCAATGC-GTAATGGGTTGAGTG
130 AGCATGTTTTAACCAATA-AAAAATAACATCAATAATGGTAGCCAACGCAG-ATTGGGTTGAGTG
* * * * *
75983448 TCATTTGTTAAATGATCTGTAAATACCATTTTTAGCCATCTATTAAAAACTAATAGTCGTCACTC
193 TCATTTGATAAATGATCTGTAATTACCATTTTTAGCCATCTATTAAAAGCTAATAGCCGTTACTC
* * * * * *
75983513 TAGACAATCATAAGGTTAATATCATATCAGAGTCTTTCTTCACGTAAGATGTCAATTATAGTTAA
258 TAGACTACCATAATGTTAATATCATATCATAGTCTTTCTTCATGTAAGATGTCAATTATAG-TCA
* * *
75983578 ACTCATGTGAGAGTAGTCTAAATAACATGTCAAGTTTGTAAATATCGATGAAAATACCAATAATT
322 ACTCATGTGAGAGTAGTCTAATTAACATGTCAAGTTTG-AAATTTTGATGAAAATACCAATAATT
*
75983643 TTACTCATGGGGCTATG
386 TTACTCATGGGGCTGTG
* * * *
75983660 ATTTTTAAACT-ACAAAAGCAAGAGGGTTTATGTTTTAGACATTTAAGTTTATAGACTAAATTTT
1 ATTTTTAAA-TGAGAAAAGCGAGAGGGCTTATGTTTTAGCCATTTAAGTTTATAGACTAAATTTT
* *
75983724 AAATATTATCTAAGTATAAAGACGAATAACAT-T-TTTTTTATAATAATGAAAGAAACAACTAAT
65 AAATATTATCTAAGTATAAAGACCAATAACATATATTTTTTATAATAACGAAAGAAACAACTAAT
* * * * * * *
75983787 ATCGTGTTTTAACCAA-ATAAAAATAACATTAATAATGGTAGTCTACGCTGACTGGGTTGAGTGT
130 AGCATGTTTTAACCAATA-AAAAATAACATCAATAATGGTAGCCAACGCAGATTGGGTTGAGTGT
*
75983851 CATTTG-TAAAATAATCTGTAATTACCATTTTTAGCCATCTATTAAAAGCTAATAGCCGTTACTC
194 CATTTGAT-AAATGATCTGTAATTACCATTTTTAGCCATCTATTAAAAGCTAATAGCCGTTACTC
* *
75983915 TAGACTACCATAACGTTAATATTATATCATAGTCTTTCTTCATGTAAGATGTCAATTATAGTCAA
258 TAGACTACCATAATGTTAATATCATATCATAGTCTTTCTTCATGTAAGATGTCAATTATAGTCAA
* * *
75983980 TCTCATGTGAGAGTAGGCTAATTAACATGTCAAGTTTGAAATTTTTTATGAAAATACTAATAATT
323 -CTCATGTGAGAGTAGTCTAATTAACATGTCAAGTTTGAAA-TTTTGATGAAAATACCAATAATT
*
75984045 TTACTCAT-GGGATGTG
386 TTACTCATGGGGCTGTG
* *
75984061 ATTTTTAAATGAGAAAAAGCGAGGGAGAGCTTATGTTTTAGGCATTTAAGTTTATAGACTAAATT
1 ATTTTTAAATGAG-AAAAGCGA--GAGGGCTTATGTTTTAGCCATTTAAGTTTATAGACTAAATT
*
75984126 TTAAATATTATCTAAGTATAAAGACCAATAACATATATTTTTCTATAATAACCAAAGAAACAACT
63 TTAAATATTATCTAAGTATAAAGACCAATAACATATATTTTT-TATAATAACGAAAGAAACAACT
* * * * * *
75984191 AATTGCAAGATTTAACCAATAAAAAAAAACATCAATAATGGTAACCAACGCATATTGGGTTGAGT
127 AATAGCATGTTTTAACCAATAAAAAATAACATCAATAATGGTAGCCAACGCAGATTGGGTTGAGT
* *
75984256 GTCATTTGATAAATAATCTGTAATTATCATTTTTAGCCATCTATTAAAAGCTAATAGCCGTTACT
192 GTCATTTGATAAATGATCTGTAATTACCATTTTTAGCCATCTATTAAAAGCTAATAGCCGTTACT
* * *
75984321 TTAGACTACCATAATGTTAATATCATATCATGGTCTTTCTTCATGTAAGATGTTAATTATAGTCA
257 CTAGACTACCATAATGTTAATATCATATCATAGTCTTTCTTCATGTAAGATGTCAATTATAGTCA
* * * * * *
75984386 ACCCAATGTGAGAGTAGTTTAATTAAGATGTAAACTTTTTAAATTTTGATGAAAATACCAATAAT
322 ACTC-ATGTGAGAGTAGTCTAATTAACATGTCAA-GTTTGAAATTTTGATGAAAATACCAATAAT
* *
75984451 TTTACTGATGGGGCTTTG
385 TTTACTCATGGGGCTGTG
* * * *
75984469 ATTTTTAAATTAGTAAAGCGATAGGGCTTATGTTTTAGCCATTTAAGTATATAGACTAAATTTTA
1 ATTTTTAAATGAGAAAAGCGAGAGGGCTTATGTTTTAGCCATTTAAGTTTATAGACTAAATTTTA
* * * *
75984534 AATCTTATTTAAGTATAAATAGCAATAACATATATATATATATATATATATATATTGGTAATAAC
66 AATATTATCTAAGTAT-AA-AG----ACCA-ATA-ACATATAT-T-T-T-T-TA----TAATAAC
* * * *
75984599 AAAAAAAAAAAACAACAACTAATAGCATGTTTTAA-CAA-AAAAAAT-ACATCAATAATTGTAGG
114 ------GAAAGA-AACAACTAATAGCATGTTTTAACCAATAAAAAATAACATCAATAATGGTAGC
* *
75984661 CAACGCGGATTGGGTTGAGTGTCATTTGTTAAATGATCTGTAATTACCATTTTCTAGCCATCTAT
172 CAACGCAGATTGGGTTGAGTGTCATTTGATAAATGATCTGTAATTACCATTTT-TAGCCATCTAT
* *
75984726 TAAAAGCTAATAACCGTTACTCTAGACTACCAAAATGTTAATATCATATCATAGTCTTTCTTCAT
236 TAAAAGCTAATAGCCGTTACTCTAGACTACCATAATGTTAATATCATATCATAGTCTTTCTTCAT
* * *
75984791 GTAAGATGTCAATTATAGTTAACTTCGTGTGAGAGTAGTCTAATTAACATGTCAAGTTTTTAAAT
301 GTAAGATGTCAATTATAGTCAAC-TCATGTGAGAGTAGTCTAATTAACATGTCAAG-TTTGAAAT
* * ****
75984856 TTTGACT-AAAATACTAATAATTTTACTAAAAAAGCTGTG
364 TTTGA-TGAAAATACCAATAATTTTACTCATGGGGCTGTG
* * * * * * * * *
75984895 ACTTTTAAATTAGGAAAGTGAGAGGCCTAATGTTTTAACTATTTAAGTATGA-AGACTAAATTTT
1 ATTTTTAAATGAGAAAAGCGAGAGGGCTTATGTTTTAGCCATTTAAGT-TTATAGACTAAATTTT
* * * * * *
75984959 AAATCTTATCTAACTATAATGACCAATGACATATTTTTTTTTTTATAATAACGAAAGAAACAATT
65 AAATATTATCTAAGTATAAAGACCAATAACATA---TATTTTTTATAATAACGAAAGAAACAACT
* ** * * ** * * * ** *
75985024 AATAACATGTTTTAACCAAGT-AAAAGGAACATGAAAAATGACATCAAACAC-GAATTCAGTCGA
127 AATAGCATGTTTTAACCAA-TAAAAAATAACATCAATAATGGTAGCCAACGCAG-ATTGGGTTGA
* * *
75985087 GTGTCATTTGATTAATGATCTGTAATTACCATTTTTAGCCATCTATTAAAAGCTTATAGTCGTTA
190 GTGTCATTTGATAAATGATCTGTAATTACCATTTTTAGCCATCTATTAAAAGCTAATAGCCGTTA
*
75985152 CTCTAGACTACCATAAGGTTAATAGT-ATATCATAGTCTTTCTTCATGTAAGATGTCAATTATAG
255 CTCTAGACTACCATAATGTTAATA-TCATATCATAGTCTTTCTTCATGTAAGATGTCAATTATAG
* * * * * *
75985216 TCAAACTCATGTGAGTGCAATCTAATTAACAAGTCAAGTTTGTAAATCTTGATGAAAATACTAAT
319 TC-AACTCATGTGAGAGTAGTCTAATTAACATGTCAAGTTTG-AAATTTTGATGAAAATACCAAT
*
75985281 AATTTTACTGATGGGGCTGTG
382 AATTTTACTCATGGGGCTGTG
** * ** * * * *
75985302 ATTTTTAAACAACAAAAATGAGAGGGCTTATGTTTTAGCCATTTAAGTATAGAGACTTAATTTTT
1 ATTTTTAAATGAGAAAAGCGAGAGGGCTTATGTTTTAGCCATTTAAGTTTATAGACTAAATTTTA
* * ** *
75985367 AATATTATCTAAGTATAAAGATCAATAATATATATTTTTTATAATAATAAAAGAAAGAACTAATA
66 AATATTATCTAAGTATAAAGACCAATAACATATATTTTTTATAATAACGAAAGAAACAACTAATA
* * *
75985432 GCATGTTTTAAACAA-ATAAAAATAACATCAATAATGGTAGCAAACGCGGATTGGGTTGAGTGTC
131 GCATGTTTTAACCAATA-AAAAATAACATCAATAATGGTAGCCAACGCAGATTGGGTTGAGTGTC
* * *
75985496 ATTTGATAAATTATCTGTAATTACCATTTTTACCCATCTATTAAAAGCTACTAGCC
195 ATTTGATAAATGATCTGTAATTACCATTTTTAGCCATCTATTAAAAGCTAATAGCC
75985552 TCCAGTTCTA
Statistics
Matches: 1957, Mismatches: 272, Indels: 135
0.83 0.12 0.06
Matches are distributed among these distances:
400 1 0.00
401 23 0.01
402 304 0.16
403 44 0.02
404 451 0.23
405 171 0.09
406 21 0.01
407 485 0.25
408 84 0.04
411 3 0.00
412 10 0.01
413 7 0.00
414 1 0.00
415 1 0.00
416 3 0.00
417 4 0.00
418 5 0.00
419 3 0.00
420 4 0.00
421 9 0.00
424 1 0.00
425 64 0.03
426 229 0.12
427 10 0.01
428 19 0.01
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (402 bp):
ATTTTTAAATGAGAAAAGCGAGAGGGCTTATGTTTTAGCCATTTAAGTTTATAGACTAAATTTTA
AATATTATCTAAGTATAAAGACCAATAACATATATTTTTTATAATAACGAAAGAAACAACTAATA
GCATGTTTTAACCAATAAAAAATAACATCAATAATGGTAGCCAACGCAGATTGGGTTGAGTGTCA
TTTGATAAATGATCTGTAATTACCATTTTTAGCCATCTATTAAAAGCTAATAGCCGTTACTCTAG
ACTACCATAATGTTAATATCATATCATAGTCTTTCTTCATGTAAGATGTCAATTATAGTCAACTC
ATGTGAGAGTAGTCTAATTAACATGTCAAGTTTGAAATTTTGATGAAAATACCAATAATTTTACT
CATGGGGCTGTG
Found at i:75984570 original size:2 final size:2
Alignment explanation
Indices: 75984563--75984588 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
75984553 TAGCAATAAC
75984563 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
75984589 TGGTAATAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75986884 original size:103 final size:101
Alignment explanation
Indices: 75986768--75986979 Score: 298
Period size: 103 Copynumber: 2.1 Consensus size: 101
75986758 AGAGGGCTTG
** *
75986768 TGTTTTAGCCATTTAAGTATATAAACTAAAATTTAAATCTTATCTAAGTATAAAGACCAATAACA
1 TGTTTTAAACATTTAAGTATAGAAACTAAAATTTAAATCTTATCTAAGTATAAAGACCAATAACA
* *
75986833 TATTTTTTTTATAATAACGAAAGGAACAACTAATAGCA
66 TA-TTTTTTTATAATAACGAAA-GAAAAACTAATAACA
* * * ** *
75986871 TGTTTTAAACATTTTAGTGTAGAGACTAACTTTTAAATCTTATCTAAGTATAATGACCAATAACA
1 TGTTTTAAACATTTAAGTATAGAAACTAAAATTTAAATCTTATCTAAGTATAAAGACCAATAACA
*
75986936 TATTTTTTTATAATAATGAAAGAAAAACTAATAACA
66 TATTTTTTTATAATAACGAAAGAAAAACTAATAACA
75986972 TGTTTTAA
1 TGTTTTAA
75986980 CCAAGTAAAA
Statistics
Matches: 97, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 21 0.22
102 18 0.19
103 58 0.60
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.37
Consensus pattern (101 bp):
TGTTTTAAACATTTAAGTATAGAAACTAAAATTTAAATCTTATCTAAGTATAAAGACCAATAACA
TATTTTTTTATAATAACGAAAGAAAAACTAATAACA
Found at i:75989409 original size:25 final size:25
Alignment explanation
Indices: 75989375--75989428 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 25
75989365 GGTTTCTTGG
75989375 TTTTTT-TTT-GGGGGTTAGGTTTT
1 TTTTTTGTTTGGGGGGTTAGGTTTT
75989398 TCTTTTTGTTTGGGGGGTTAGGTTTT
1 T-TTTTTGTTTGGGGGGTTAGGTTTT
75989424 TTTTT
1 TTTTT
75989429 AGGGGGGCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 1 0.04
24 5 0.18
25 7 0.25
26 15 0.54
ACGTcount: A:0.04, C:0.02, G:0.30, T:0.65
Consensus pattern (25 bp):
TTTTTTGTTTGGGGGGTTAGGTTTT
Found at i:75990285 original size:30 final size:30
Alignment explanation
Indices: 75990249--75990310 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
75990239 TTTTGAAAAA
75990249 CAGAAATT-AAAAGACCCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CCCAACTCAACTCTCG
* *
75990279 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCCCAACTCAACTCTCG
75990309 CA
1 CA
75990311 ATATGAGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.31, G:0.10, T:0.18
Consensus pattern (30 bp):
CAGAAATTAAAAAGCCCAACTCAACTCTCG
Found at i:75990457 original size:78 final size:76
Alignment explanation
Indices: 75990292--75990563 Score: 339
Period size: 77 Copynumber: 3.5 Consensus size: 76
75990282 AAATTAAAAA
*
75990292 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAAAAACAGAAATTGAAAATAGCT
1 GCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTTG---AAAAACAGAAATTGAAAATACCT
* *
75990357 CAGCACGTAAGCCAAG
61 CAGCGCGTGAGCCAAG
* * * *
75990373 GCTCAACTCACTTCTCGCAATGTGAGTTGATTTTTTGAAAAATATAAATTGAAAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTG--AAAATACCTCAG
* * * *
75990438 TGTGTGATCTGAA-
64 CGCGTGAGC-CAAG
* *
75990451 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAGC
75990516 GCGTGAGCCAAG
65 GCGTGAGCCAAG
75990528 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
75990564 TTTGAAAGGC
Statistics
Matches: 165, Mismatches: 21, Indels: 15
0.82 0.10 0.07
Matches are distributed among these distances:
76 20 0.12
77 47 0.28
78 43 0.26
79 27 0.16
80 1 0.01
81 27 0.16
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (76 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCG
CGTGAGCCAAG
Found at i:75990538 original size:77 final size:77
Alignment explanation
Indices: 75990292--75990585 Score: 367
Period size: 79 Copynumber: 3.7 Consensus size: 77
75990282 AAATTAAAAA
75990292 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAAAAACAGAAATTGAAAATAGCT
1 GCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG---AAAAACAGAAATTGAAAATAGCT
* *
75990357 CAGCACGTAAGCCAAG
62 CAGCGCGTGAGCCAAG
* * * * *
75990373 GCTCAACTCACTTCTCGCAATGTGAGTTGA-TTTTTTGAAAAATATAAATTGAAAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG--AAAATAGCTCA
* * * *
75990437 GTGTGTGATCTGAA-
64 GCGCGTGAGC-CAAG
*
75990451 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATAGCTCAGC
75990516 GCGTGAGCCAAG
66 GCGTGAGCCAAG
**
75990528 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAAACAGAAATTGAAAA
75990586 ACGAAAATTG
Statistics
Matches: 184, Mismatches: 22, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
76 14 0.08
77 47 0.26
78 43 0.23
79 52 0.28
80 1 0.01
81 27 0.15
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (77 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATAGCTCAGC
GCGTGAGCCAAG
Found at i:75990713 original size:74 final size:76
Alignment explanation
Indices: 75990590--75991048 Score: 255
Period size: 74 Copynumber: 5.9 Consensus size: 76
75990580 TGAAAAACGA
* * * *
75990590 AAATTGAAAATACCTCGGCGTGTAACCTGAGGCTCAACTCGCTGCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCATGT-ACCTGAGGCTCAACTCCCTGCTCGCAATACGAGTTAATTTT
75990655 -TTTTACAACAG
65 GTTTTACAACAG
* *
75990666 AAATTGAAATTACCTCAGCATGT-CCTGAGGCTCAACTCACCT-CTCGCAATATGAGTTAATTTT
1 AAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTC-CCTGCTCGCAATACGAGTTAATTTT
75990729 GTTTTTTGA-AAGGCAG
65 G--TTTT-ACAA--CAG
*** * ** * * * *
75990745 AAATTGAAAA-ACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCA
1 AAATTGAAAATAC-CTCA--GCATGTACCT----GAG-G--CTCA-ACTC-CCT-G---CTCGCA
* *
75990809 ATACGAGTTGATTTTTTTTTACAACAG
50 ATACGAGTTAATTTTGTTTTACAACAG
* * * *
75990836 AAATT-AAAATACCTCAGCGTGT-CTTGAGGCTCAACTCACCT-CTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTC-CCTGCTCGCAATACGAGTTAATTTT
** *
75990898 -TTGAAACATACGAA
65 GTT-TTACA-AC-AG
* * *
75990912 AAATTGACAATACCTCAGCGTGT-CC-GAGGCTCAACTCACCT-CTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTC-CCTGCTCGCAATACGAGTTAATTTT
*
75990974 -TTTGACAACAG
65 GTTTTACAACAG
* * * *
75990985 AAATTGAAAATACCTCAGCGTGT-CCTGAAGCTCAACTCACCT-CTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTC-CCTGCTCGCAATACGAGTTAATTTT
75991048 G
65 G
75991049 AAAAAGTAGA
Statistics
Matches: 306, Mismatches: 45, Indels: 65
0.74 0.11 0.16
Matches are distributed among these distances:
73 27 0.09
74 94 0.31
75 7 0.02
76 64 0.21
77 23 0.08
78 3 0.01
79 19 0.06
80 3 0.01
81 3 0.01
82 4 0.01
83 2 0.01
86 2 0.01
87 3 0.01
88 2 0.01
89 3 0.01
90 11 0.04
91 10 0.03
92 1 0.00
93 6 0.02
95 19 0.06
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (76 bp):
AAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCCCTGCTCGCAATACGAGTTAATTTTG
TTTTACAACAG
Found at i:75990765 original size:169 final size:166
Alignment explanation
Indices: 75990426--75991047 Score: 814
Period size: 169 Copynumber: 3.8 Consensus size: 166
75990416 ATAAATTGAA
* * * * *
75990426 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAC
* * *
75990491 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAAATACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
75990555 TGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
127 TGATTTTTTTTTGAAAGGCAGAAATTGAAAAACG-AAATTG
* * * *
75990596 AAAATACCTCGGCGTGTAACCTGAGGCTCAACTC-GCTGCTCGCAATACGAGTTGATTTTTTTTA
1 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCT-CTCGCAATACGAGTTGATTTTTTTGA
* * *
75990660 CAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
65 CAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
75990725 TTTTGTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
130 -TTT-TTTTTTGAAAGGCAGAAATTGAAAAAC-GAAATTG
* * *
75990765 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTTTA
1 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TTTTTTTGA
*
75990830 CAACAGAAATT-AAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
65 CAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
**
75990894 ---TTTTTTGAAA--C----A-T-ACGAA--AAATTG
130 TTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAATTG
*
75990918 ACAATACCTCAGCGTGT--CC-GAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAC
*
75990980 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
75991045 TTT
131 TTT
75991048 GAAAAAGTAG
Statistics
Matches: 412, Mismatches: 29, Indels: 39
0.86 0.06 0.08
Matches are distributed among these distances:
149 19 0.05
150 83 0.20
151 2 0.00
153 22 0.05
156 3 0.01
157 1 0.00
158 1 0.00
162 1 0.00
164 10 0.02
166 2 0.00
167 35 0.08
168 3 0.01
169 153 0.37
170 77 0.19
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.29
Consensus pattern (166 bp):
AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAC
AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTTGAAAGGCAGAAATTGAAAAACGAAATTG
Found at i:75990916 original size:76 final size:73
Alignment explanation
Indices: 75990758--75991047 Score: 404
Period size: 74 Copynumber: 3.9 Consensus size: 73
75990748 TTGAAAAACG
* *
75990758 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA--T
*
75990823 TTTTTTACAACA
62 TTTTTGACAACA
* *
75990835 GAAATT-AAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
75990899 TGAAACATACGA
66 TG--ACA-AC-A
* *
75990911 AAAATTGACAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TTTT
75990975 TTGACAACA
65 TTGACAACA
* *
75990984 GAAATTGAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
75991048 GAAAAAGTAG
Statistics
Matches: 193, Mismatches: 13, Indels: 18
0.86 0.06 0.08
Matches are distributed among these distances:
72 6 0.03
73 29 0.15
74 69 0.36
75 5 0.03
76 54 0.28
77 30 0.16
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (73 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TGACAACA
Found at i:75991019 original size:150 final size:152
Alignment explanation
Indices: 75990759--75991047 Score: 485
Period size: 150 Copynumber: 1.9 Consensus size: 152
75990749 TGAAAAACGG
* *
75990759 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
* * *
75990824 TTTTTACAACAGAAATTAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
65 TTTTGACAACAGAAATTAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGA
75990889 GTTGATTTTTTGAAACATACGAA
130 GTTGATTTTTTGAAACATACGAA
*
75990912 AAATTGACAATACCTCAGCGTGT-CC-GAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TTTT
1 AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
75990974 TTTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGA
66 TTTGACAACAGAAATT-AAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGA
75991039 GTTGATTTT
130 GTTGATTTT
75991048 GAAAAAGTAG
Statistics
Matches: 129, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
149 19 0.15
150 87 0.67
151 2 0.02
153 21 0.16
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (152 bp):
AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTTGACAACAGAAATTAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAACATACGAA
Found at i:75991116 original size:54 final size:54
Alignment explanation
Indices: 75991016--75991121 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
75991006 GTCCTGAAGC
* *
75991016 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGACTTGATTTTGAAAAAGTA-AAATTGAAAAGGT
*
75991070 TCAACCCACCTCTCGCAATATGACTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGACTTGATT-TTGAA-AAAGTAAAATTGAAAA
75991122 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGACTTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:75991238 original size:140 final size:138
Alignment explanation
Indices: 75990975--75991494 Score: 748
Period size: 140 Copynumber: 3.8 Consensus size: 138
75990965 GTTGATTTTT
* * *
75990975 TTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
75991040 TTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGACTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG--TTGATTCTTGA
75991105 ACAACGTAAA
129 ACAACGTAAA
75991115 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
75991180 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGTGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATA--TGTTGATTCTTGA
75991245 ACAACGTAAA
129 ACAACGTAAA
75991255 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
75991320 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAA-CCACCTCTCGCAATA---TGA--GTTG-A-
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGTTGATTCTTGAAC
*
75991377 AA--TTAA
131 AACGTAAA
* * * * *
75991383 ---AACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
75991445 TTGATTTTGAAAAA-CAAAAATTAAAAGGCTT-AACTCACCTCTCG-AATATG
66 CTGATTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATG
75991495 AGTCAATTTA
Statistics
Matches: 359, Mismatches: 15, Indels: 26
0.90 0.04 0.06
Matches are distributed among these distances:
124 18 0.05
125 81 0.23
128 3 0.01
130 2 0.01
131 1 0.00
132 3 0.01
134 3 0.01
139 15 0.04
140 231 0.64
142 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (138 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGTTGATTCTTGAAC
AACGTAAA
Found at i:75991256 original size:54 final size:54
Alignment explanation
Indices: 75991156--75991261 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
75991146 GACCTGAGGC
*
75991156 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
75991210 TCAACCCACCTCTCGCAATATGTGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
75991262 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:75991487 original size:125 final size:120
Alignment explanation
Indices: 75991250--75991590 Score: 470
Period size: 125 Copynumber: 2.8 Consensus size: 120
75991240 CTTGAACAAC
* * * *
75991250 GTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
1 GTAAATTAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
* * *
75991315 ATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCACCTCTCGCAATATGA
66 ATGAGTTGATTTTGAAAAA-CAAAAATTAAAAGGTTCAACCACCTCTCG-AATATGA
*
75991372 GTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGC
1 G-T-AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGC
75991437 AATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTT-AACTCACCTCTCGAATATGA
63 AATATGAGTTGATTTTGAAAAACAAAAATTAAAAGG-TTCAAC-CACCTCTCGAATATGA
* * * * * * *
75991496 GTCAATTTAAAGCATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAAT
1 GTAAATTAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
75991561 ATGAGTTGATTTTG-AAAACAAAAATTAAAA
66 ATGAGTTGATTTTGAAAAACAAAAATTAAAA
75991591 ATACCTCAAC
Statistics
Matches: 198, Mismatches: 16, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
120 16 0.08
121 62 0.31
122 8 0.04
123 2 0.01
124 31 0.16
125 79 0.40
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (120 bp):
GTAAATTAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGTTCAACCACCTCTCGAATATGA
Found at i:75991619 original size:70 final size:70
Alignment explanation
Indices: 75991470--75991642 Score: 201
Period size: 70 Copynumber: 2.5 Consensus size: 70
75991460 AAAAATTAAA
* * * * * * *
75991470 AGGCTTAACTCACCTCTCG-AATATGAG-TCAATTTAAAGCATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
75991533 CCCCG
66 CCCCG
*
75991538 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAAC-T
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
75991602 GTCTTG
65 GCCCCG
75991608 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
75991643 CCTTGAAAAG
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
68 17 0.19
69 9 0.10
70 42 0.47
71 22 0.24
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:75996135 original size:72 final size:70
Alignment explanation
Indices: 75995980--75996360 Score: 331
Period size: 68 Copynumber: 5.5 Consensus size: 70
75995970 AATTAAAAGA
* * * * *
75995980 CTCAACTCATCTCTCGC-ATATGA-TTGAATTTTGAAAATAGAATTTGAAA-TA-CTTAGCGTGA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAATAGAA-TTGAAATTACCTCAACGTGT
* *
75996041 CGCAAGG
64 CCCGAGG
* *
75996048 CTCAACTCACCTCTCG-AATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA---AATA-GAATTGAAATTACCTCAACGT
75996112 G-CCCGAGG
62 GTCCCGAGG
* * * * * *
75996120 TTCAACTCACTTCTCGC-ATATGAGTTGATTTTTGAAACATAATTGAAATTACCTCAACATGTCT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAATAGAATTGAAATTACCTCAACGTGTCC
*
75996184 TGAGG
66 CGAGG
* * ** *
75996189 CTCAACTCACCTCTCGCAATGTGAGCTGATTTTCTTGAAAGCGAAATTGAAA-TA-CTCAGCGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TTGAAATAG-AATTGAAATTACCTCAACGTG
*
75996252 -CCCTGAGT
63 TCCC-GAGG
75996260 CTC-A-TCA-CTCTCGCAATATGAGTTGATTTTTGAAACATA-AATTGAAATTACCTCAACGTGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AA-ATAGAATTGAAATTACCTCAACGTGT
**
75996321 CTTGAGG
64 CCCGAGG
*
75996328 CTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
75996361 CTTGGAAAAC
Statistics
Matches: 254, Mismatches: 36, Indels: 43
0.76 0.11 0.13
Matches are distributed among these distances:
66 11 0.04
67 7 0.03
68 73 0.29
69 36 0.14
70 14 0.06
71 48 0.19
72 49 0.19
73 16 0.06
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (70 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAATAGAATTGAAATTACCTCAACGTGTCC
CGAGG
Done.