Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 264 of 292
Found at i:75996316 original size:139 final size:140
Alignment explanation
Indices: 75996045--75996364 Score: 467
Period size: 139 Copynumber: 2.3 Consensus size: 140
75996035 GCGTGACGCA
* * *
75996045 AGGCTCAACTCACCTCTCG-AATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT--CTTGAATAGGAATTGAAATTACCTCAG
75996109 CGTGCCCGAGGTTCAACTCACTTCTCGCATATGAGTTGATTTTTGAAACATAATTGAAATTACCT
64 CGTGCCCGAGGTTCAACTCACTTCTCGCATATGAGTTGATTTTTGAAACATAATTGAAATTACCT
75996174 CAACATGTCTTG
129 CAACATGTCTTG
*
75996186 AGGCTCAACTCACCTCTCGCAATGTGAGCTGATTTTCTTGAA-AGCGAAATTGAAA-TA-CTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGAATAG-G-AATTGAAATTACCTCAG
75996248 CGTGCCCTGA-GTCTC-A-TCAC-TCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATT
64 CGTGCCC-GAGGT-TCAACTCACTTCTCGC-ATATGAGTTGATTTTTGAAACAT-AATTGAAATT
*
75996309 ACCTCAACGTGTCTTG
125 ACCTCAACATGTCTTG
75996325 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTG
75996365 GAAAACATGA
Statistics
Matches: 166, Mismatches: 6, Indels: 16
0.88 0.03 0.09
Matches are distributed among these distances:
137 6 0.04
138 27 0.16
139 81 0.49
140 11 0.07
141 27 0.16
142 14 0.08
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.32
Consensus pattern (140 bp):
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGAATAGGAATTGAAATTACCTCAGCG
TGCCCGAGGTTCAACTCACTTCTCGCATATGAGTTGATTTTTGAAACATAATTGAAATTACCTCA
ACATGTCTTG
Found at i:76008621 original size:21 final size:22
Alignment explanation
Indices: 76008581--76008624 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
76008571 ACATGCATAT
76008581 ATATATAATAACAGTATTAGAA
1 ATATATAATAACAGTATTAGAA
*
76008603 ATATATAATATCA-TATTAGAA
1 ATATATAATAACAGTATTAGAA
76008624 A
1 A
76008625 CACACATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (22 bp):
ATATATAATAACAGTATTAGAA
Found at i:76008867 original size:13 final size:14
Alignment explanation
Indices: 76008849--76008879 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
76008839 ATGTATGAAT
76008849 ATATACATATA-TA
1 ATATACATATATTA
76008862 ATATACATATATTA
1 ATATACATATATTA
76008876 ATAT
1 ATAT
76008880 TGATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:76008941 original size:21 final size:21
Alignment explanation
Indices: 76008915--76008961 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
76008905 AACAACCATT
76008915 AATAA-TAATAATACTTAA-AAA
1 AATAATTAAT-ATA-TTAATAAA
76008936 AATAATTAATATATTAATAAA
1 AATAATTAATATATTAATAAA
76008957 AATAA
1 AATAA
76008962 CAGTAACAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.17
21 16 0.67
22 4 0.17
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
AATAATTAATATATTAATAAA
Found at i:76010043 original size:23 final size:23
Alignment explanation
Indices: 76009995--76010067 Score: 103
Period size: 23 Copynumber: 3.2 Consensus size: 23
76009985 TACGAGGACT
* * *
76009995 GTGGCGGTAT-GGGATTGTTGTG
1 GTGGGGGTATGGGGCTTGTTGTA
*
76010017 GTGGGGGTATGGGGCTTGTGGTA
1 GTGGGGGTATGGGGCTTGTTGTA
76010040 GTGGGGGTATGGGGCTTGTTGTA
1 GTGGGGGTATGGGGCTTGTTGTA
76010063 GTGGG
1 GTGGG
76010068 TCAGTTTGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
22 9 0.20
23 36 0.80
ACGTcount: A:0.08, C:0.04, G:0.55, T:0.33
Consensus pattern (23 bp):
GTGGGGGTATGGGGCTTGTTGTA
Found at i:76010076 original size:15 final size:15
Alignment explanation
Indices: 76010058--76010106 Score: 80
Period size: 15 Copynumber: 3.3 Consensus size: 15
76010048 ATGGGGCTTG
*
76010058 TTGTAGTGGGTCAGT
1 TTGTAATGGGTCAGT
76010073 TTGTAATGGGTCAGT
1 TTGTAATGGGTCAGT
*
76010088 TAGTAATGGGTCAGT
1 TTGTAATGGGTCAGT
76010103 TTGT
1 TTGT
76010107 TTTAAGTGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.18, C:0.06, G:0.35, T:0.41
Consensus pattern (15 bp):
TTGTAATGGGTCAGT
Found at i:76010439 original size:26 final size:26
Alignment explanation
Indices: 76010403--76010486 Score: 143
Period size: 26 Copynumber: 3.2 Consensus size: 26
76010393 CATGAAATTC
76010403 TTATCATGAAGCATTTACCTAACCTA
1 TTATCATGAAGCATTTACCTAACCTA
*
76010429 TTATCATGAAGCATTTACCTAACCCA
1 TTATCATGAAGCATTTACCTAACCTA
76010455 TTATCATGGAA-CATTTACCTAACCTA
1 TTATCAT-GAAGCATTTACCTAACCTA
76010481 TTATCA
1 TTATCA
76010487 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
26 52 0.95
27 3 0.05
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.35
Consensus pattern (26 bp):
TTATCATGAAGCATTTACCTAACCTA
Found at i:76012677 original size:11 final size:11
Alignment explanation
Indices: 76012661--76012685 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
76012651 ATTTCCTCAA
76012661 AATGTATAAAT
1 AATGTATAAAT
76012672 AATGTATAAAT
1 AATGTATAAAT
76012683 AAT
1 AAT
76012686 AAATTTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (11 bp):
AATGTATAAAT
Found at i:76016551 original size:25 final size:27
Alignment explanation
Indices: 76016513--76016566 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
76016503 TATGAGATTT
*
76016513 TTTTAATATATAAAATGAA-AAATTAAA
1 TTTTAATATAT-AAATAAATAAATTAAA
76016540 TTTT-ATA-ATAAATAAATAAATTAAA
1 TTTTAATATATAAATAAATAAATTAAA
76016565 TT
1 TT
76016567 ATTTAGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 6 0.24
25 12 0.48
26 3 0.12
27 4 0.16
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (27 bp):
TTTTAATATATAAATAAATAAATTAAA
Found at i:76017169 original size:29 final size:29
Alignment explanation
Indices: 76017115--76017174 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
76017105 ACTTAAATTT
** *
76017115 AACTATTTTTTTTCCTTGTTTAATACTTA
1 AACTATTTTTTTTCAATGTTTAATACCTA
*
76017144 AACTATTTTTTTGTCAAT-TTTGATACCTA
1 AACTATTTTTTT-TCAATGTTTAATACCTA
76017173 AA
1 AA
76017175 ATTGTCAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 23 0.88
30 3 0.12
ACGTcount: A:0.28, C:0.13, G:0.05, T:0.53
Consensus pattern (29 bp):
AACTATTTTTTTTCAATGTTTAATACCTA
Found at i:76018204 original size:5 final size:5
Alignment explanation
Indices: 76018194--76018220 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
76018184 TTATATGTTT
76018194 CATCC CATCC CATCC CATCC CATCC CA
1 CATCC CATCC CATCC CATCC CATCC CA
76018221 CACTACCCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.59, G:0.00, T:0.19
Consensus pattern (5 bp):
CATCC
Found at i:76025677 original size:30 final size:30
Alignment explanation
Indices: 76025641--76025701 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
76025631 CTTAACAAGC
76025641 AATGTCTCTAAAATAATAACAAAATTAACA
1 AATGTCTCTAAAATAATAACAAAATTAACA
*
76025671 AATGTCTTTAAAATAATAACAAAATTAACA
1 AATGTCTCTAAAATAATAACAAAATTAACA
76025701 A
1 A
76025702 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.28
Consensus pattern (30 bp):
AATGTCTCTAAAATAATAACAAAATTAACA
Found at i:76027167 original size:14 final size:14
Alignment explanation
Indices: 76027148--76027175 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76027138 AAGTATCCAT
76027148 AACTTAAAAAAAAA
1 AACTTAAAAAAAAA
76027162 AACTTAAAAAAAAA
1 AACTTAAAAAAAAA
76027176 CTTAAATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (14 bp):
AACTTAAAAAAAAA
Found at i:76027172 original size:12 final size:12
Alignment explanation
Indices: 76027155--76027181 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
76027145 CATAACTTAA
76027155 AAAAAAAAACTT
1 AAAAAAAAACTT
76027167 AAAAAAAAACTT
1 AAAAAAAAACTT
76027179 AAA
1 AAA
76027182 TTTCTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAAAAAACTT
Found at i:76027491 original size:25 final size:25
Alignment explanation
Indices: 76027466--76027514 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
76027456 AAACCAATTA
*
76027466 AAAT-TTTTTTAGTTTTTAAGTTTT
1 AAATCTTTTTTAGATTTTAAGTTTT
* *
76027490 AAATCTTTTTTGGATTTTAATTTTT
1 AAATCTTTTTTAGATTTTAAGTTTT
76027515 TTTAATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.24, C:0.02, G:0.08, T:0.65
Consensus pattern (25 bp):
AAATCTTTTTTAGATTTTAAGTTTT
Found at i:76028102 original size:30 final size:32
Alignment explanation
Indices: 76028066--76028133 Score: 88
Period size: 30 Copynumber: 2.2 Consensus size: 32
76028056 GGTTTCATTT
* *
76028066 CAGTCACCTAAC-TTTTGAAAAA-TAACAAAA
1 CAGTCACCTAACGTTATAAAAAAGTAACAAAA
*
76028096 CAGTCA-CTAACGTTATAAAAAAGTGACAAAA
1 CAGTCACCTAACGTTATAAAAAAGTAACAAAA
76028127 CAGTCAC
1 CAGTCAC
76028134 TGACTAATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 5 0.16
30 14 0.44
31 13 0.41
ACGTcount: A:0.49, C:0.21, G:0.10, T:0.21
Consensus pattern (32 bp):
CAGTCACCTAACGTTATAAAAAAGTAACAAAA
Found at i:76028115 original size:29 final size:30
Alignment explanation
Indices: 76028066--76028134 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 30
76028056 GGTTTCATTT
* *
76028066 CAGTCACCTAACTTTTGAAAAA-TAACAAAA
1 CAGTCA-CTAACTTATAAAAAAGTAACAAAA
*
76028096 CAGTCACTAACGTTATAAAAAAGTGACAAAA
1 CAGTCACTAAC-TTATAAAAAAGTAACAAAA
76028127 CAGTCACT
1 CAGTCACT
76028135 GACTAATAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 5 0.15
30 14 0.41
31 15 0.44
ACGTcount: A:0.48, C:0.20, G:0.10, T:0.22
Consensus pattern (30 bp):
CAGTCACTAACTTATAAAAAAGTAACAAAA
Found at i:76028280 original size:12 final size:12
Alignment explanation
Indices: 76028263--76028300 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
76028253 CCTTTAATAG
*
76028263 AGAAGAAGAAGA
1 AGAAGAAAAAGA
76028275 AGAAGAAAAAGA
1 AGAAGAAAAAGA
*
76028287 AAAAGAAAAAGA
1 AGAAGAAAAAGA
76028299 AG
1 AG
76028301 CAGCAGCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAGAAAAAGA
Found at i:76031499 original size:46 final size:46
Alignment explanation
Indices: 76031432--76031648 Score: 301
Period size: 46 Copynumber: 4.7 Consensus size: 46
76031422 TGGCAACCTG
* *
76031432 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* * *
76031478 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
*
76031524 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* **
76031570 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAA
* * * *
76031616 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
76031649 TCACATCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 155 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
Found at i:76031626 original size:138 final size:130
Alignment explanation
Indices: 76031384--76031648 Score: 361
Period size: 138 Copynumber: 2.0 Consensus size: 130
76031374 GTATGCTCTC
*
76031384 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTT
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGTT
* * * * *
76031449 GAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACT
66 GAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACT
* *
76031514 TGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---AG--TAAGA
*
76031579 CCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACT
58 CCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGACACC
76031643 ATGGCA
122 ATGGCA
76031649 TCACATCAAA
Statistics
Matches: 117, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
130 46 0.39
133 2 0.02
136 1 0.01
137 1 0.01
138 67 0.57
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (130 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGTT
GAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACT
Found at i:76031954 original size:23 final size:25
Alignment explanation
Indices: 76031909--76031955 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
76031899 AATAAATATA
*
76031909 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
76031934 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
76031956 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:76032801 original size:31 final size:31
Alignment explanation
Indices: 76032766--76032842 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
76032756 CATAAAAGGA
*
76032766 CACACGCCCGTGTATGTGGTCCATGTGGACT
1 CACACGCCCGTGTATGTGGGCCATGTGGACT
* **
76032797 CACACGCCCGTGTAGGTGGGCTGTGTGGACT
1 CACACGCCCGTGTATGTGGGCCATGTGGACT
*
76032828 CACACGCCCATGTAT
1 CACACGCCCGTGTAT
76032843 CTTGGGGCAC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (31 bp):
CACACGCCCGTGTATGTGGGCCATGTGGACT
Found at i:76037619 original size:16 final size:16
Alignment explanation
Indices: 76037585--76037619 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
76037575 TGTAGTTTTT
**
76037585 AAAATTTAAAATATTA
1 AAAATTTAAAATAAAA
76037601 AAAATTTAAAATAAAA
1 AAAATTTAAAATAAAA
76037617 AAA
1 AAA
76037620 CACATATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATTTAAAATAAAA
Found at i:76038909 original size:23 final size:23
Alignment explanation
Indices: 76038882--76038946 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
76038872 ATCTATGTGG
*
76038882 CTTTTATGTTTTTATTTTTATC-T
1 CTTTTATATTTTT-TTTTTATCTT
*
76038905 CTTTTATATTTATTTTTCTATCTT
1 CTTTTATATTT-TTTTTTTATCTT
* *
76038929 CTTTTCTCTTTTTTTTTT
1 CTTTTATATTTTTTTTTT
76038947 CTGCATAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
23 23 0.66
24 12 0.34
ACGTcount: A:0.11, C:0.12, G:0.02, T:0.75
Consensus pattern (23 bp):
CTTTTATATTTTTTTTTTATCTT
Found at i:76043382 original size:8 final size:8
Alignment explanation
Indices: 76043369--76043405 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
76043359 TTATGTTTAG
76043369 TATATTAT
1 TATATTAT
76043377 TATATTAT
1 TATATTAT
76043385 TATATTAT
1 TATATTAT
76043393 TATATTAT
1 TATATTAT
76043401 TATAT
1 TATAT
76043406 AATAAAGATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:76043438 original size:5 final size:5
Alignment explanation
Indices: 76043428--76043464 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
76043418 TTATGTTTTA
76043428 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
76043465 ATAAACTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:76044766 original size:15 final size:15
Alignment explanation
Indices: 76044743--76044792 Score: 75
Period size: 15 Copynumber: 3.4 Consensus size: 15
76044733 TTTATTAAAT
76044743 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* *
76044758 TTATTTTGATTGAAT
1 TTATATTGATTGAAA
76044773 TTATATTGATTG-AA
1 TTATATTGATTGAAA
76044787 TTATAT
1 TTATAT
76044793 AATATATATG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 7 0.23
15 24 0.77
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:76045223 original size:21 final size:22
Alignment explanation
Indices: 76045164--76045229 Score: 89
Period size: 21 Copynumber: 3.0 Consensus size: 22
76045154 GCTTTATCGA
76045164 TTAGGCACTTTATGTGTCGTAT
1 TTAGGCACTTTATGTGTCGTAT
* **
76045186 TTCAGGCACCTCGTGTGTCGT-T
1 TT-AGGCACTTTATGTGTCGTAT
76045208 TTAGGCACTTTATGTGTCGTAT
1 TTAGGCACTTTATGTGTCGTAT
76045230 ACTGATCAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 15 0.42
22 6 0.17
23 15 0.42
ACGTcount: A:0.15, C:0.18, G:0.24, T:0.42
Consensus pattern (22 bp):
TTAGGCACTTTATGTGTCGTAT
Found at i:76047127 original size:26 final size:26
Alignment explanation
Indices: 76047098--76047157 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
76047088 TCCCTTTGAA
* * *
76047098 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
76047124 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
76047152 CCATTC
1 TCATTC
76047158 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:76047143 original size:28 final size:28
Alignment explanation
Indices: 76047112--76047183 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
76047102 TCGATATTTT
*
76047112 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
76047140 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
76047168 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
76047184 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:76049055 original size:2 final size:2
Alignment explanation
Indices: 76049048--76049074 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76049038 TTTTAAAAAT
76049048 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
76049075 TTGTAGGTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76052591 original size:25 final size:23
Alignment explanation
Indices: 76052544--76052611 Score: 77
Period size: 22 Copynumber: 2.9 Consensus size: 23
76052534 TGAATATTTA
76052544 AATTTT-TAAAAATATTTACTAATT
1 AATTTTATAAAAATATTT--TAATT
76052568 AATTTTTATAATAAATATTTTAATT
1 AA-TTTTATAA-AAATATTTTAATT
*
76052593 -ATTTGATAAAAATATTTTA
1 AATTTTATAAAAATATTTTA
76052612 TTTCAATAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
22 10 0.25
23 7 0.17
24 3 0.08
25 9 0.22
26 3 0.08
27 8 0.20
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (23 bp):
AATTTTATAAAAATATTTTAATT
Found at i:76054133 original size:2 final size:2
Alignment explanation
Indices: 76054126--76054157 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
76054116 ACTCCTTACC
76054126 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76054158 CAGTCTCTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76061264 original size:24 final size:24
Alignment explanation
Indices: 76061231--76061311 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
76061221 ATGCTGAGGA
*
76061231 TGCTCATCTACCTTGGTTGGAAAC
1 TGCTCCTCTACCTTGGTTGGAAAC
* *
76061255 TGCTCCTCTACTTTGGTAGGAAGA-
1 TGCTCCTCTACCTTGGTTGGAA-AC
* *
76061279 TCCT-CTGCTACCTTGGTTGGAACC
1 TGCTCCT-CTACCTTGGTTGGAAAC
76061303 TGCTCCTCT
1 TGCTCCTCT
76061312 TTCTTAGTTG
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
23 2 0.04
24 40 0.89
25 3 0.07
ACGTcount: A:0.16, C:0.28, G:0.21, T:0.35
Consensus pattern (24 bp):
TGCTCCTCTACCTTGGTTGGAAAC
Found at i:76065758 original size:69 final size:69
Alignment explanation
Indices: 76065645--76065783 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
76065635 GATAGGAAAA
*
76065645 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTCCAGCAGGTTTTGTAGTTGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTCCAGCAGGTTTTGTAGTGGTGGTAGG
76065710 GCTG
66 GCTG
*
76065714 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTCCAGCAGGTTTTGTAGTGGTGGTAGG
76065779 GCTG
66 GCTG
76065783 A
1 A
76065784 TAGAGTCTTG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (69 bp):
ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTCCAGCAGGTTTTGTAGTGGTGGTAGG
GCTG
Found at i:76071853 original size:69 final size:69
Alignment explanation
Indices: 76071772--76071910 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
76071762 TAATGTGTCA
*
76071772 TGAAATTCAATACAATATTTTAACTTTAACCATCGATTTATTTTTAATTTTTTAAATTTTATCCC
1 TGAAATTCAATACAATATTTTAACTTTAACCATCGATTTATTTTTAATTCTTTAAATTTTATCCC
76071837 AACT
66 AACT
*
76071841 TGAAATTCAATACAATATTTTAACTTTAACCATCGATTTATTTTTAGTTCTTTAAATTTTATCCC
1 TGAAATTCAATACAATATTTTAACTTTAACCATCGATTTATTTTTAATTCTTTAAATTTTATCCC
76071906 AACT
66 AACT
76071910 T
1 T
76071911 CCAACAAAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.34, C:0.15, G:0.04, T:0.47
Consensus pattern (69 bp):
TGAAATTCAATACAATATTTTAACTTTAACCATCGATTTATTTTTAATTCTTTAAATTTTATCCC
AACT
Found at i:76072257 original size:6 final size:6
Alignment explanation
Indices: 76072246--76072280 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
76072236 TTTTTTATTC
*
76072246 TTTTTA TTTTTA TTTTTA TTTTTA TATTTTG TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA T-TTTTA TTTT
76072281 ATAAAATATG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 22 0.81
7 5 0.19
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:76073061 original size:12 final size:12
Alignment explanation
Indices: 76073044--76073068 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76073034 TGGAGAATAG
76073044 ATTTAAAATTTT
1 ATTTAAAATTTT
76073056 ATTTAAAATTTT
1 ATTTAAAATTTT
76073068 A
1 A
76073069 AAAATATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTTAAAATTTT
Found at i:76073131 original size:34 final size:32
Alignment explanation
Indices: 76073068--76073139 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 32
76073058 TTAAAATTTT
76073068 AAAAATATTAAAATAATTTTTTTGATAAATTA
1 AAAAATATTAAAATAATTTTTTTGATAAATTA
* *
76073100 AAAAATATTAAAA-AATATTTTT-AT-ATTTA
1 AAAAATATTAAAATAATTTTTTTGATAAATTA
*
76073129 AATAATATTAA
1 AAAAATATTAA
76073140 TATAGTTACA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 14 0.38
30 2 0.05
31 8 0.22
32 13 0.35
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (32 bp):
AAAAATATTAAAATAATTTTTTTGATAAATTA
Found at i:76075388 original size:26 final size:28
Alignment explanation
Indices: 76075352--76075411 Score: 70
Period size: 26 Copynumber: 2.2 Consensus size: 28
76075342 AATACTTTTC
* * *
76075352 ATTTAATTTTAATATATATA-TT-TAAA
1 ATTTTATTTTAATAAAAATATTTATAAA
*
76075378 ATTTTATTTTATTAAAAATATTTATAAA
1 ATTTTATTTTAATAAAAATATTTATAAA
76075406 ATTTTA
1 ATTTTA
76075412 CAAATATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 16 0.57
27 2 0.07
28 10 0.36
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (28 bp):
ATTTTATTTTAATAAAAATATTTATAAA
Found at i:76076518 original size:12 final size:13
Alignment explanation
Indices: 76076503--76076559 Score: 57
Period size: 12 Copynumber: 4.5 Consensus size: 13
76076493 AATAGGGGTG
76076503 ATAATAATA-ATA
1 ATAATAATACATA
76076515 ATAATAATACA-A
1 ATAATAATACATA
*
76076527 ACAATAATACAT-
1 ATAATAATACATA
*
76076539 ATATATATATATATA
1 ATA-ATA-ATACATA
76076554 ATAATA
1 ATAATA
76076560 GTAGTTAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
12 22 0.59
13 4 0.11
14 8 0.22
15 3 0.08
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.33
Consensus pattern (13 bp):
ATAATAATACATA
Found at i:76076646 original size:3 final size:3
Alignment explanation
Indices: 76076633--76076715 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
76076623 GAGGGCATAT
76076633 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
76076677 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
76076716 AACAAAGCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 9 0.14
3 45 0.69
4 9 0.14
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:76076655 original size:12 final size:12
Alignment explanation
Indices: 76076631--76076712 Score: 69
Period size: 12 Copynumber: 6.5 Consensus size: 12
76076621 GAGAGGGCAT
76076631 ATATAATATAATA
1 ATATAA-ATAATA
76076644 ATATAAATAATA
1 ATATAAATAATA
76076656 ATATATACATGAGA-A
1 ATATA-A-AT-A-ATA
76076671 ATA-ATAATAATA
1 ATATA-AATAATA
76076683 ATATAAATAATA
1 ATATAAATAATA
* *
76076695 GTAAAAATAATA
1 ATATAAATAATA
*
76076707 AAATAA
1 ATATAA
76076713 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
11 1 0.02
12 36 0.62
13 10 0.17
14 5 0.09
15 5 0.09
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:76076674 original size:21 final size:18
Alignment explanation
Indices: 76076633--76076715 Score: 73
Period size: 18 Copynumber: 4.6 Consensus size: 18
76076623 GAGGGCATAT
*
76076633 ATAAT-ATAATAATATAA
1 ATAATAATAATAATAGAA
76076650 ATAATAATATATACATGAGAA
1 ATAATAATA-ATA-AT-AGAA
*
76076671 ATAATAATAATAATATAA
1 ATAATAATAATAATAGAA
* *
76076689 ATAATAGTAAAAATA-ATA
1 ATAATAATAATAATAGA-A
76076707 A-AATAATAA
1 ATAATAATAA
76076716 AACAAAGCTC
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
17 13 0.23
18 21 0.38
19 5 0.09
20 5 0.09
21 12 0.21
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAATAGAA
Found at i:76076703 original size:27 final size:27
Alignment explanation
Indices: 76076631--76076716 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
76076621 GAGAGGGCAT
* *
76076631 ATATAATATAATAATATAAATAATAAT-
1 ATATAA-ATAATAGTAAAAATAATAATA
* *
76076658 ATATACAT--GAG-AAATAATAATAATA
1 ATATAAATAATAGTAAA-AATAATAATA
76076683 ATATAAATAATAGTAAAAATAATAA-A
1 ATATAAATAATAGTAAAAATAATAATA
76076709 ATAATAAA
1 AT-ATAAA
76076717 ACAAAGCTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 7 0.15
26 5 0.11
27 20 0.43
28 3 0.06
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATATAAATAATAGTAAAAATAATAATA
Found at i:76077067 original size:19 final size:19
Alignment explanation
Indices: 76077045--76077096 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
76077035 TTCTTTCCAA
76077045 AAAAACAAAAAACACCTCC
1 AAAAACAAAAAACACCTCC
* *
76077064 AAAAAAAAAAAACCTCCTCC
1 AAAAACAAAAAA-CACCTCC
*
76077084 -AAAACAAATAACA
1 AAAAACAAAAAACA
76077097 ATCCTCCTCC
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
18 1 0.04
19 20 0.74
20 6 0.22
ACGTcount: A:0.65, C:0.27, G:0.00, T:0.08
Consensus pattern (19 bp):
AAAAACAAAAAACACCTCC
Found at i:76077073 original size:17 final size:18
Alignment explanation
Indices: 76077046--76077080 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
76077036 TCTTTCCAAA
*
76077046 AAAACAAAAAACACCTCC
1 AAAACAAAAAAAACCTCC
76077064 AAAA-AAAAAAAACCTCC
1 AAAACAAAAAAAACCTCC
76077081 TCCAAAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.66, C:0.29, G:0.00, T:0.06
Consensus pattern (18 bp):
AAAACAAAAAAAACCTCC
Found at i:76077106 original size:23 final size:20
Alignment explanation
Indices: 76077040--76077112 Score: 83
Period size: 20 Copynumber: 3.5 Consensus size: 20
76077030 CAACCTTCTT
* *
76077040 TCCAAAAAAACAAAAAACACC
1 TCCAAAAAAA-AAAAACCTCC
76077061 TCCAAAAAAAAAAAACCTCC
1 TCCAAAAAAAAAAAACCTCC
*
76077081 TCCAAAACAAATAACAATCCTCC
1 TCCAAAA-AAA-AA-AAACCTCC
76077104 TCCAAAAAA
1 TCCAAAAAA
76077113 CCAAAAACCC
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
20 15 0.33
21 13 0.28
22 4 0.09
23 14 0.30
ACGTcount: A:0.59, C:0.30, G:0.00, T:0.11
Consensus pattern (20 bp):
TCCAAAAAAAAAAAACCTCC
Found at i:76077615 original size:44 final size:44
Alignment explanation
Indices: 76077567--76078339 Score: 653
Period size: 44 Copynumber: 17.6 Consensus size: 44
76077557 ATCTTCGATC
*
76077567 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
*
76077611 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* * *
76077655 TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-
1 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACT
* * * * * * * *
76077698 TGCTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTT-GATT
1 TG-TTCCCTATAAGCACAGGGATGCCAAATCTGATAT-TTTCAACT
*
76077743 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* * *
76077787 TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-
1 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACT
* * * * * * * * *
76077830 TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
1 TG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* *
76077875 TGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* * *
76077919 TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-
1 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACT
* * * * * * * * *
76077962 TGTTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
1 TG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* *
76078007 TGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* * *
76078051 TGTTCCCTATAAGCACA-GGATGCC--ATGCTGAAATCTTCGA-T
1 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATTTTCAACT
* * * * * * * * *
76078092 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
1 -TG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* *
76078138 TGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* * *
76078182 TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-
1 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACT
* * * * * * * * *
76078225 TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
1 TG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
* *
76078270 TGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACT
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
76078314 TGTTCCCTATAAGCACAGGGATGCCA
1 TGTTCCCTATAAGCACAGGGATGCCA
76078340 TGCTGAAATC
Statistics
Matches: 581, Mismatches: 116, Indels: 64
0.76 0.15 0.08
Matches are distributed among these distances:
41 3 0.01
42 18 0.03
43 49 0.08
44 455 0.78
45 45 0.08
46 11 0.02
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (44 bp):
TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
Found at i:76077769 original size:132 final size:132
Alignment explanation
Indices: 76077557--76078398 Score: 1499
Period size: 132 Copynumber: 6.4 Consensus size: 132
76077547 CAGATTTGCT
* * * * * * * * * * *
76077557 ATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
76077621 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
76077686 AA
131 AA
* *
76077688 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTTGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
76077753 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
76077818 AA
131 AA
76077820 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
76077885 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
76077950 AA
131 AA
*
76077952 ATCTTTGATCTGTTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
76078017 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACA-GGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
76078081 AA
131 AA
*
76078083 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
76078148 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
76078213 AA
131 AA
76078215 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
76078280 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
76078345 AA
131 AA
* *
76078347 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCG
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
76078399 GTCTGCTCCT
Statistics
Matches: 688, Mismatches: 21, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
131 140 0.20
132 548 0.80
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (132 bp):
ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
AA
Found at i:76078263 original size:395 final size:395
Alignment explanation
Indices: 76077557--76078398 Score: 1506
Period size: 395 Copynumber: 2.1 Consensus size: 395
76077547 CAGATTTGCT
* * * * * * * * *
76077557 ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATA
1 ATCTTCGATCTGTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGACTTGTTCCCTATA
76077622 AGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
66 AGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
* * *
76077687 AATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTTGATTTGTTCCCTA
131 AATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTA
76077752 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
196 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
76077817 GAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCC
261 GAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCC
76077882 TATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG
326 TATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG
76077947 CTGAA
391 CTGAA
* *
76077952 ATCTTTGATCTGTTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTCGATCTG-TTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGACTTGTTCCCTAT
*
76078017 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACA-GGATGCCATGCTG
65 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
76078081 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCT
130 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCT
*
76078146 ATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC
195 ATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC
76078211 TGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCC
260 TGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCC
76078276 CTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAT
325 CTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAT
76078341 GCTGAA
390 GCTGAA
*
76078347 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCG
1 ATCTTCGATCTG-TTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
76078399 GTCTGCTCCT
Statistics
Matches: 427, Mismatches: 19, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
395 335 0.78
396 92 0.22
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (395 bp):
ATCTTCGATCTGTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGACTTGTTCCCTATA
AGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
AATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTA
TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
GAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCC
TATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG
CTGAA
Found at i:76078371 original size:44 final size:43
Alignment explanation
Indices: 76077509--76078376 Score: 554
Period size: 44 Copynumber: 19.7 Consensus size: 43
76077499 GGCGATATCC
* * * * * *
76077509 GCTATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCA-GATTT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCATG--CT
76077554 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAAT-CT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC--ATGCT
* * * *
76077598 GATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCC--ATGCT
* * * *
76077642 GATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCATGCT
** * * * * *
76077685 GAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCA-GATCT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCATG--CT
* * *
76077730 GTTATCTTTGATTTGTTCCCTATAAGCACAGGGATGCCAAAT-CT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC--ATGCT
* * * *
76077774 GATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCATGCT
** * * * * *
76077817 GAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCA-GATCT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCATG--CT
*
76077862 GCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAAT-CT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC--ATGCT
* * *
76077906 GCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCATGCT
** * * * * *
76077949 GAAATCTTTGATCTGTTTCACTGTAAGCACAGGAATGTCA-GATCT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCATG--CT
*
76077994 GCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAAT-CT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC--ATGCT
* * *
76078038 GCTGTTTTC-AACTTGTTCCCTATAAGCACA-GGATGCCATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCATGCT
** * * * *
76078080 GAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA-GATCT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCATG--CT
*
76078125 GCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAAT-CT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC--ATGCT
* * *
76078169 GCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCATGCT
** * * * * *
76078212 GAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCA-GATCT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCATG--CT
*
76078257 GCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAAT-CT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC--ATGCT
* * *
76078301 GCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCATGCT
** * *
76078344 GAAATCTTCGATCTGCTTCACTGTAAGCACAGG
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGG
76078377 AATGTCAGAT
Statistics
Matches: 646, Mismatches: 124, Indels: 107
0.74 0.14 0.12
Matches are distributed among these distances:
41 2 0.00
42 19 0.03
43 77 0.12
44 461 0.71
45 81 0.13
46 6 0.01
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (43 bp):
GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCATGCT
Found at i:76078538 original size:68 final size:68
Alignment explanation
Indices: 76078454--76078649 Score: 261
Period size: 68 Copynumber: 2.9 Consensus size: 68
76078444 TCTTCCACTG
* * * * *
76078454 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT-TT
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
76078518 GCTA
66 -CTA
* * *
76078522 AAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGTCATTTCAGGAAGAAAAGATCCT
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
*
76078587 CTG
66 CTA
* * *
76078590 AAACTTCAAGGAGATTTGCTGTGGCTTTTATCCGCTCCAATGCCATTTCAGGGA-AAAAGA
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
76078650 AATTTGTAAT
Statistics
Matches: 112, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
67 6 0.05
68 105 0.94
69 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (68 bp):
AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
CTA
Found at i:76078890 original size:132 final size:131
Alignment explanation
Indices: 76078754--76079229 Score: 651
Period size: 132 Copynumber: 3.6 Consensus size: 131
76078744 TAAATTCAAC
* * * *
76078754 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTATTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
*
76078819 GGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
66 GG-TTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
76078884 AT
130 AT
76078886 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
*
76078951 AGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
66 -GGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
76079016 AT
130 AT
* ** * *
76079018 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCAATCTGTT-TCCTATTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* * * * * * * *
76079080 GAGATAA-GATCTG-CAATTCGG-TCTGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTCT
66 G-GTTAAGGCT-TGTAAATTCGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATCT
76079141 TCGAT
127 TCGAT
*
76079146 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTATTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
*
76079211 GGCTTAAGGCTTGTGAATT
66 GG-TTAAGGCTTGTAAATT
76079230 TACTGATTCT
Statistics
Matches: 306, Mismatches: 27, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
127 10 0.03
128 69 0.23
129 19 0.06
130 25 0.08
131 20 0.07
132 161 0.53
133 2 0.01
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.36
Consensus pattern (131 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
GGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGA
T
Found at i:76078983 original size:175 final size:176
Alignment explanation
Indices: 76078667--76079131 Score: 505
Period size: 175 Copynumber: 2.7 Consensus size: 176
76078657 AATTTCCAGC
* * * * * *
76078667 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * *
76078732 GGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCA
66 GGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGAGGTTAAGACTTGTAAATCTTCA
* * **** *
76078797 GCCTATTACCCTACTGCTTAGGGGTTTAAGGTTTGT-AAATTCG-G
131 GCCTATTACCCTACTGCTTAGGGGGTTAAAGCCCATCAAATTCGAT
76078841 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
1 C-TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
* *
76078906 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCTTGTAAAT-T
65 GGGTTAAGATCTGTAAA--TTCAACCTGTTACCCTACTGCTTAGGAGGTTAAGACTTGTAAATCT
* * * **
76078970 T-GGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
128 TCAGCCTATTACCCTACTGCTTAGGGGGTTAAAGCCCATCAAATTCGAT
* ** * * *
76079018 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCAATCTGTTT-CCTATTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * * *** * *
76079081 AGATAAGATCTG-CAATTCGGTCTGTTACCCTACCGATTAGG-GGTTTAAGAC
66 GGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGAGG-TTAAGAC
76079132 CCTTCGTCTT
Statistics
Matches: 248, Mismatches: 37, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
170 2 0.01
171 28 0.11
173 2 0.01
174 24 0.10
175 122 0.49
176 30 0.12
177 40 0.16
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (176 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
GGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGAGGTTAAGACTTGTAAATCTTCA
GCCTATTACCCTACTGCTTAGGGGGTTAAAGCCCATCAAATTCGAT
Found at i:76079129 original size:84 final size:86
Alignment explanation
Indices: 76078667--76079178 Score: 240
Period size: 87 Copynumber: 5.9 Consensus size: 86
76078657 AATTTCCAGC
* * * * * * *
76078667 CTGTTACCCTA-CTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAG
1 CTGTTACCCTACCGA-TTAGGGGGTTAAGACCCTTCATCTTCAATCTGTTTCCCTACTGCTT-AG
* * * *
76078731 GG-GTTAAGATCTGTAAATTCAAC
64 GGAGATAAGATCTG-CAATTCGAT
* * ** * ** * *
76078754 CTGTTACCCTACTGGTTAGGGGGTTAAGA-TTTGTAAATCTTCAGCCTATTACCCTACTGCTTAG
1 CTGTTACCCTACCGATTAGGGGGTTAAGACCCT-T-CATCTTCAATCTGTTTCCCTACTGCTTAG
* * * * *
76078818 GG-GTTTAAGGTTTGTAAATTCG-G
64 GGAG-ATAAGATCTG-CAATTCGAT
* * * *
76078841 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAG
1 C-TGTTACCCTACCGATTAGGGGGTTAAGA-CCCTTCATCTTCAATCTGTTTCCCTACTGCTTAG
* * * *
76078905 GGGGTTAAGATCTGTAAATCTTC-AGC
64 GGAGATAAGATCTG-CAA--TTCGA-T
* * * * * * *** *
76078931 CTGTTACCCTACTGCTTAGGAGGTTAAG-GCTTGTAAAT-TTGGCT-TGTTACCCTACTGCTTAG
1 CTGTTACCCTACCGATTAGGGGGTTAAGACCCT-T-CATCTTCAATCTGTTTCCCTACTGCTTAG
* * ** *
76078993 GGGGTTAAAGCCCAT-CATCTTCGAT
64 GGAGAT-AAGATC-TGCA-ATTCGAT
* * * * *
76079018 CTGTTTCCCTACTGCTTAGGGGGTTAAGA-TCTTCATCTTCAATCTGTTT-CCTATTGCTTAGGG
1 CTGTTACCCTACCGATTAGGGGGTTAAGACCCTTCATCTTCAATCTGTTTCCCTACTGCTTAGGG
*
76079081 AGATAAGATCTGCAATTCGGT
66 AGATAAGATCTGCAATTCGAT
* * *
76079102 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACCGATTAGGGGGTTAAGACCCTTCATCTTCAATCTGTTTCCCTACTGCTTAGGG
* *
76079167 GGTTAAGATCTG
66 AGATAAGATCTG
76079179 TAAATCTTCA
Statistics
Matches: 330, Mismatches: 70, Indels: 51
0.73 0.16 0.11
Matches are distributed among these distances:
84 31 0.09
85 25 0.08
86 42 0.13
87 102 0.31
88 89 0.27
89 37 0.11
90 4 0.01
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (86 bp):
CTGTTACCCTACCGATTAGGGGGTTAAGACCCTTCATCTTCAATCTGTTTCCCTACTGCTTAGGG
AGATAAGATCTGCAATTCGAT
Found at i:76079173 original size:44 final size:43
Alignment explanation
Indices: 76078667--76079218 Score: 323
Period size: 44 Copynumber: 12.7 Consensus size: 43
76078657 AATTTCCAGC
* * * *
76078667 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GACCTTCATCTTCGAT
* * * * * ** * *
76078711 CTATTTCCCAACTGCTTAAGGGGTTAAGATCTGT-AAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCT-TCATCTTCGAT
* ** * *
76078754 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCT-T-CATCTTCGA-T
* * ** * ** *
76078799 CTATTACCCTACTGCTTAGGGGTTTAAG-GTTTGTAAATTCG-G
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCTT-CATCTTCGAT
* *
76078841 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
1 C-TGTTACCCTACTGCTTAGGGGGTT-AAGACCTTCATCTTCGAT
* * * *
76078886 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCT-T-CATCTTCGA-T
* * * * * *
76078931 CTGTTACCCTACTGCTTAGGAGGTTAAGGCTTGTAAAT-TTGGCT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCT-T-CATCTTCGAT
* *
76078975 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTT-AAGACCTTCATCTTCGAT
* * *
76079018 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCAAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCTTCATCTTCGAT
* * * * * * * *
76079061 CTGTT-TCCTATTGCTTAGGGAGATAAGATCTGCA-ATTCGGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCTTCATCTTCGAT
* * * *
76079102 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGA-CCTTCATCTTCGAT
* * * *
76079146 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCT-T-CATCTTCGA-T
* *
76079191 CTGTTACCCTATTGCTTAGGGGCTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
76079219 GCTTGTGAAT
Statistics
Matches: 390, Mismatches: 96, Indels: 43
0.74 0.18 0.08
Matches are distributed among these distances:
41 9 0.02
42 43 0.11
43 118 0.30
44 119 0.31
45 101 0.26
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGACCTTCATCTTCGAT
Found at i:76079195 original size:45 final size:45
Alignment explanation
Indices: 76078721--76079218 Score: 365
Period size: 45 Copynumber: 11.4 Consensus size: 45
76078711 CTATTTCCCA
* *
76078721 ACTGCTTAAGGGGTTAAGATCTGTAAA--TTCAACCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
* * *
76078764 ACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTATTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
* * * * *
76078809 ACTGCTTAGGGGTTTAAGGTTTGTAAA--TTCGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
* ** * * *
76078852 ACTGCTTAGGGGGTTAA-AGC-CCATCATCTTC-GATCTGTTTCCCT
1 ACTGCTTAGGGGGTTAAGATCTGTA-AATCTTCAG-CCTGTTACCCT
76078896 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
* * * *
76078941 ACTGCTTAGGAGGTTAAG-GCTTGTAAAT-TT-GGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATC-TGTAAATCTTCAGCCTGTTACCCT
* ** * * *
76078984 ACTGCTTAGGGGGTTAA-AGC-CCATCATCTTC-GATCTGTTTCCCT
1 ACTGCTTAGGGGGTTAAGATCTGTA-AATCTTCAG-CCTGTTACCCT
* ** *
76079028 ACTGCTTAGGGGGTTAAGATCT-T-CATCTTCAATCTGTT-TCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
* * * * * *
76079070 ATTGCTTAGGGAGATAAGATCTG-CAA--TTCGGTCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
* * * * ** * *
76079112 ACCGATTAGGGGTTTAAGACCCT-T-CGTCTTC-GATCTGTTTCCCT
1 ACTGCTTAGGGGGTTAAGA-TCTGTAAATCTTCAG-CCTGTTACCCT
76079156 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
* *
76079201 ATTGCTTAGGGGCTTAAG
1 ACTGCTTAGGGGGTTAAG
76079219 GCTTGTGAAT
Statistics
Matches: 357, Mismatches: 69, Indels: 56
0.74 0.14 0.12
Matches are distributed among these distances:
41 11 0.03
42 41 0.11
43 105 0.29
44 86 0.24
45 111 0.31
46 3 0.01
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.35
Consensus pattern (45 bp):
ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
Found at i:76079393 original size:66 final size:66
Alignment explanation
Indices: 76079282--76079408 Score: 209
Period size: 66 Copynumber: 1.9 Consensus size: 66
76079272 TCTATGCTTA
* * * *
76079282 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATTCTCCTAACTAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAAACAAATGCTCCTAACTAAATGTGTTATGAAT
76079347 G
66 G
*
76079348 TGTCAAATAATTAGGATGCTATGATTGAAATGAAACAAATGCTCCTAACTAAATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAAACAAATGCTCCTAACTAAATGTGTTAT
76079409 TATATGAATG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAAACAAATGCTCCTAACTAAATGTGTTATGAAT
G
Found at i:76080602 original size:8 final size:8
Alignment explanation
Indices: 76080556--76080592 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
76080546 TTTTTTTTTT
76080556 TTTTTGTG
1 TTTTTGTG
76080564 TTTTTGTG
1 TTTTTGTG
76080572 TTTTTGTG
1 TTTTTGTG
76080580 TTTTTGTG
1 TTTTTGTG
76080588 TTTTT
1 TTTTT
76080593 TTTTTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (8 bp):
TTTTTGTG
Found at i:76083429 original size:19 final size:20
Alignment explanation
Indices: 76083405--76083451 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
76083395 AGTGAAAGTT
76083405 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
76083424 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
76083444 -AATGCAAA
1 TAATGCAAA
76083452 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:76086012 original size:39 final size:40
Alignment explanation
Indices: 76085847--76086013 Score: 91
Period size: 39 Copynumber: 4.1 Consensus size: 40
76085837 TAATAAGAAT
* *
76085847 AATATTAAAGTAAAGTAA-AC---AATAATACTATATATA
1 AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
* * *
76085883 AATATATATATATGTATA-TAATAGAAATACACACTACTATATAATAA
1 AATAT-TA-A-AT-TAAAGTAATACAAA-A-ACAATACTATAT-AT-A
* * * *
76085930 TAATAATAAA-TATAGAAATACAAAAAGCAA-A-TATAATAAA
1 -AATATTAAATTAAAGTAATACAAAAA-CAATACTAT-ATATA
76085970 AATATTAAATTAAAGTAATA-AAAAACAATACTATATATA
1 AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
76086009 AATAT
1 AATAT
76086014 ATATATATGT
Statistics
Matches: 98, Mismatches: 14, Indels: 35
0.67 0.10 0.24
Matches are distributed among these distances:
36 5 0.05
37 2 0.02
38 4 0.04
39 27 0.28
40 16 0.16
41 4 0.04
42 4 0.04
43 7 0.07
44 8 0.08
45 11 0.11
46 3 0.03
47 3 0.03
48 4 0.04
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (40 bp):
AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
Found at i:76086221 original size:92 final size:89
Alignment explanation
Indices: 76086050--76086239 Score: 196
Period size: 92 Copynumber: 2.1 Consensus size: 89
76086040 ACACTAATAT
*
76086050 ATAATAATAGTAATAGCAAAAATAATGAAAATATGAGTAATATTAATAATATATTAGAATATAAA
1 ATAATAATAATAATAGCAAAAATAATGAAAATATGAGTAATATTAATAATATATTAGAATATAAA
**
76086115 AGTAAAGTAATAACAATAGGGATGATA
66 AAAAAAGTAATAACAATA---ATGATA
*
76086142 ATAATAATAATAATA-CAAACAATAAT--ACATAT-A-TATATATATAATAATAGTAGTTAGAA-
1 ATAATAATAATAATAGCAAA-AATAATGAAAATATGAGTA-ATAT-TAATAATA-TA-TTAGAAT
76086201 ATAAAAAAAATAG-AAGTAACAATAATGATA
61 ATAAAAAAAA-AGTAA-TAACAATAATGATA
*
76086231 GTAATAATA
1 ATAATAATA
76086240 TAAATAAATA
Statistics
Matches: 86, Mismatches: 5, Indels: 17
0.80 0.05 0.16
Matches are distributed among these distances:
88 2 0.02
89 19 0.22
90 13 0.15
91 16 0.19
92 36 0.42
ACGTcount: A:0.58, C:0.03, G:0.10, T:0.28
Consensus pattern (89 bp):
ATAATAATAATAATAGCAAAAATAATGAAAATATGAGTAATATTAATAATATATTAGAATATAAA
AAAAAAGTAATAACAATAATGATA
Found at i:76086277 original size:3 final size:3
Alignment explanation
Indices: 76086264--76086346 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
76086254 GAGGGCATAT
76086264 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
76086308 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
76086347 AACAAAGCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 9 0.14
3 45 0.69
4 9 0.14
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:76086286 original size:12 final size:12
Alignment explanation
Indices: 76086262--76086343 Score: 69
Period size: 12 Copynumber: 6.5 Consensus size: 12
76086252 GAGAGGGCAT
76086262 ATATAATATAATA
1 ATATAA-ATAATA
76086275 ATATAAATAATA
1 ATATAAATAATA
76086287 ATATATACATGAGA-A
1 ATATA-A-AT-A-ATA
76086302 ATA-ATAATAATA
1 ATATA-AATAATA
76086314 ATATAAATAATA
1 ATATAAATAATA
* *
76086326 GTAAAAATAATA
1 ATATAAATAATA
*
76086338 AAATAA
1 ATATAA
76086344 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
11 1 0.02
12 36 0.62
13 10 0.17
14 5 0.09
15 5 0.09
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:76086305 original size:21 final size:18
Alignment explanation
Indices: 76086264--76086346 Score: 73
Period size: 18 Copynumber: 4.6 Consensus size: 18
76086254 GAGGGCATAT
*
76086264 ATAAT-ATAATAATATAA
1 ATAATAATAATAATAGAA
76086281 ATAATAATATATACATGAGAA
1 ATAATAATA-ATA-AT-AGAA
*
76086302 ATAATAATAATAATATAA
1 ATAATAATAATAATAGAA
* *
76086320 ATAATAGTAAAAATA-ATA
1 ATAATAATAATAATAGA-A
76086338 A-AATAATAA
1 ATAATAATAA
76086347 AACAAAGCTC
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
17 13 0.23
18 21 0.38
19 5 0.09
20 5 0.09
21 12 0.21
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAATAGAA
Found at i:76086334 original size:27 final size:27
Alignment explanation
Indices: 76086262--76086347 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
76086252 GAGAGGGCAT
* *
76086262 ATATAATATAATAATATAAATAATAAT-
1 ATATAA-ATAATAGTAAAAATAATAATA
* *
76086289 ATATACAT--GAG-AAATAATAATAATA
1 ATATAAATAATAGTAAA-AATAATAATA
76086314 ATATAAATAATAGTAAAAATAATAA-A
1 ATATAAATAATAGTAAAAATAATAATA
76086340 ATAATAAA
1 AT-ATAAA
76086348 ACAAAGCTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 7 0.15
26 5 0.11
27 20 0.43
28 3 0.06
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATATAAATAATAGTAAAAATAATAATA
Found at i:76086704 original size:21 final size:22
Alignment explanation
Indices: 76086680--76086758 Score: 83
Period size: 21 Copynumber: 3.6 Consensus size: 22
76086670 CTTCTTTCCA
76086680 AAAAAACAAAAAAA-CACCTCC
1 AAAAAACAAAAAAACCACCTCC
*
76086701 AAAAAACAAAAAAACCTCCTCC
1 AAAAAACAAAAAAACCACCTCC
*
76086723 --AAAACAAAGAACAATCCTCCTCC
1 AAAAAACAAA-AA-AA-CCACCTCC
*
76086746 AAAAAACCAAAAA
1 AAAAAACAAAAAA
76086759 CCCCCCACCT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
20 8 0.16
21 16 0.32
22 8 0.16
23 9 0.18
24 2 0.04
25 7 0.14
ACGTcount: A:0.62, C:0.29, G:0.01, T:0.08
Consensus pattern (22 bp):
AAAAAACAAAAAAACCACCTCC
Found at i:76086704 original size:22 final size:22
Alignment explanation
Indices: 76086676--76086758 Score: 87
Period size: 22 Copynumber: 3.7 Consensus size: 22
76086666 CAACCTTCTT
*
76086676 TCCAAAAAAACAAAAAAACACC
1 TCCAAAAAAACAAAAAAACTCC
76086698 TCC-AAAAAACAAAAAAACCTCC
1 TCCAAAAAAACAAAAAAA-CTCC
* * **
76086720 TCCAAAACAAAGAACAATCCTCC
1 TCCAAAA-AAACAAAAAAACTCC
*
76086743 TCCAAAAAACCAAAAA
1 TCCAAAAAAACAAAAA
76086759 CCCCCCACCT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
21 14 0.28
22 15 0.30
23 14 0.28
24 7 0.14
ACGTcount: A:0.60, C:0.30, G:0.01, T:0.08
Consensus pattern (22 bp):
TCCAAAAAAACAAAAAAACTCC
Found at i:76088819 original size:24 final size:24
Alignment explanation
Indices: 76088789--76088835 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
76088779 CTCTATTTCA
76088789 ATTATTTCGTTATTTATACAAATT
1 ATTATTTCGTTATTTATACAAATT
76088813 ATTATTTCGTTATTTATACAAAT
1 ATTATTTCGTTATTTATACAAAT
76088836 CAATTCTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.09, G:0.04, T:0.53
Consensus pattern (24 bp):
ATTATTTCGTTATTTATACAAATT
Found at i:76089956 original size:19 final size:20
Alignment explanation
Indices: 76089932--76089969 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
76089922 AAAATATTAC
76089932 TAAATT-TATCATAA-AAATA
1 TAAATTCTAT-ATAAGAAATA
76089951 TAAATTCTATATAAGAAAT
1 TAAATTCTATATAAGAAAT
76089970 CAAATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (20 bp):
TAAATTCTATATAAGAAATA
Found at i:76090529 original size:2 final size:2
Alignment explanation
Indices: 76090522--76090565 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
76090512 AAGGGAAATA
76090522 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76090564 AT
1 AT
76090566 TGAACTAATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76092891 original size:6 final size:6
Alignment explanation
Indices: 76092880--76092906 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
76092870 ATTAAGAAGC
76092880 AAAAGG AAAAGG AAAAGG AAAAGG AAA
1 AAAAGG AAAAGG AAAAGG AAAAGG AAA
76092907 CAAACTTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (6 bp):
AAAAGG
Found at i:76096796 original size:16 final size:15
Alignment explanation
Indices: 76096769--76096802 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
76096759 ATAAAAGATA
76096769 AATAATAAATAAAAG
1 AATAATAAATAAAAG
*
76096784 AATAATCAAATAAATG
1 AATAAT-AAATAAAAG
76096800 AAT
1 AAT
76096803 TAAATTCTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.24
Consensus pattern (15 bp):
AATAATAAATAAAAG
Found at i:76097821 original size:25 final size:25
Alignment explanation
Indices: 76097752--76097821 Score: 86
Period size: 26 Copynumber: 2.8 Consensus size: 25
76097742 TTACTAAAAT
* *
76097752 TAGATTTGATAACATTTTTTTAAGG
1 TAGATTTGATAATACTTTTTTAAGG
* *
76097777 TAGTTTTGGTAATACATTTTTTAAGG
1 TAGATTTGATAATAC-TTTTTTAAGG
*
76097803 TAGAGTTGATAATACTTTT
1 TAGATTTGATAATACTTTT
76097822 AATTATATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
25 15 0.41
26 22 0.59
ACGTcount: A:0.30, C:0.04, G:0.17, T:0.49
Consensus pattern (25 bp):
TAGATTTGATAATACTTTTTTAAGG
Found at i:76098541 original size:30 final size:32
Alignment explanation
Indices: 76098487--76098553 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 32
76098477 TTTTTTAGCT
*
76098487 AAATTTGACACTCAACATTTTGAAAAAG-GTC
1 AAATTTGACACTCAACACTTTGAAAAAGAGTC
*
76098518 GAATTTGAC-CATCAAC-CTTTGAAAAAGAGTC
1 AAATTTGACAC-TCAACACTTTGAAAAAGAGTC
76098549 AAATT
1 AAATT
76098554 GATTTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
30 11 0.35
31 20 0.65
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.28
Consensus pattern (32 bp):
AAATTTGACACTCAACACTTTGAAAAAGAGTC
Found at i:76099528 original size:26 final size:24
Alignment explanation
Indices: 76099498--76099547 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
76099488 ATAGAAAAAA
*
76099498 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
76099524 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
76099548 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:76101933 original size:31 final size:34
Alignment explanation
Indices: 76101898--76101969 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 34
76101888 CATTTTCAAG
*
76101898 TCAAACTT-AGC-TTTATTTATTTATTT-CTTTT
1 TCAAACTTGAGCTTTTATTTATTTATTTCCATTT
*
76101929 TCAAACTTGGCGCTTTTTATTTATTTATTTCCATTT
1 TCAAACTT-GAGC-TTTTATTTATTTATTTCCATTT
76101965 TCAAA
1 TCAAA
76101970 TCAAATTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 8 0.24
33 2 0.06
35 15 0.44
36 9 0.26
ACGTcount: A:0.24, C:0.15, G:0.06, T:0.56
Consensus pattern (34 bp):
TCAAACTTGAGCTTTTATTTATTTATTTCCATTT
Found at i:76102382 original size:30 final size:30
Alignment explanation
Indices: 76102348--76102410 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
76102338 ACTTAACAAG
**
76102348 CAAATGCCTCTAAAATAATAACGAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
* *
76102378 CAAATGTCTTTAAAATAATAAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
76102408 CAA
1 CAA
76102411 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.57, C:0.13, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAAAAAAATTAA
Found at i:76115890 original size:21 final size:21
Alignment explanation
Indices: 76115860--76115901 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
76115850 TTGCTGGACA
76115860 AGAGCCGGAATGAGAGTGTTT
1 AGAGCCGGAATGAGAGTGTTT
*
76115881 AGAGCTGGAATGAGAGTGTTT
1 AGAGCCGGAATGAGAGTGTTT
76115902 TGTTGCTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.07, G:0.38, T:0.26
Consensus pattern (21 bp):
AGAGCCGGAATGAGAGTGTTT
Found at i:76129801 original size:91 final size:89
Alignment explanation
Indices: 76129632--76129870 Score: 219
Period size: 91 Copynumber: 2.7 Consensus size: 89
76129622 GAGCTCCTTG
* * ** * * * * *
76129632 GTTTTAATGAGTTCATAGCCAAAAGTTTGGGTGGTCCTGCTAAGACGGACTTTATGAATTCATCG
1 GTTTTAATGAGTTCATAACCCAGGGTTTGGGTGGTCCTACTAAGACGAACTTGATGAACTCATCA
* * *
76129697 AATATATAGGATGAAACTACTAGAT
66 AATATATAAGATG-AACCACTAAAT
* *
76129722 GCTTTTAATGAGTTCATAACCCAGGGTTTGGGTGGCCCTATTAAGACGAACTTGATGAAC-CTAT
1 G-TTTTAATGAGTTCATAACCCAGGGTTTGGGTGGTCCTACTAAGACGAACTTGATGAACTC-AT
* * *
76129786 TAAATTTATAAGATGAGCCACTAAAT
64 CAAATATATAAGATGAACCACTAAAT
* * * * * * *
76129812 GTTCTTAATGAATTCATATCTCAGGTTTTGGGTGGTCCTAGTGAGACGAATTTGATGAA
1 GTT-TTAATGAGTTCATAACCCAGGGTTTGGGTGGTCCTACTAAGACGAACTTGATGAA
76129871 TTCACTGAAT
Statistics
Matches: 121, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
89 2 0.02
90 58 0.48
91 61 0.50
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (89 bp):
GTTTTAATGAGTTCATAACCCAGGGTTTGGGTGGTCCTACTAAGACGAACTTGATGAACTCATCA
AATATATAAGATGAACCACTAAAT
Found at i:76129882 original size:90 final size:90
Alignment explanation
Indices: 76129633--76129882 Score: 213
Period size: 90 Copynumber: 2.8 Consensus size: 90
76129623 AGCTCCTTGG
* * * ** *
76129633 TTTTAATGAGTTCATAGCCAAAAGTTTGGGTGGTCCT-GCTAAGACGGACTTT-ATGAATTCATC
1 TTTTAATGAATTCATAACCCAGGGTTTGGGTGGTCCTAG-TAAGAC-GAATTTGATGAATTCAT-
* * * *
76129696 GAATATATAGGATGAAACTACTAGATGC
63 GAATTTATAAGATGAAACCACTAAATGC
* * * * * *
76129724 TTTTAATGAGTTCATAACCCAGGGTTTGGGTGGCCCTATTAAGACGAACTTGATGAA-CCTATTA
1 TTTTAATGAATTCATAACCCAGGGTTTGGGTGGTCCTAGTAAGACGAATTTGATGAATTC-A-TG
*
76129788 AATTTATAAGATG-AGCCACTAAATG-
64 AATTTATAAGATGAAACCACTAAATGC
* * * *
76129813 TTCTTAATGAATTCATATCTCAGGTTTTGGGTGGTCCTAGTGAGACGAATTTGATGAATTCACTG
1 TT-TTAATGAATTCATAACCCAGGGTTTGGGTGGTCCTAGTAAGACGAATTTGATGAATTCA-TG
76129878 AATTT
64 AATTT
76129883 TTAAATTGAA
Statistics
Matches: 127, Mismatches: 26, Indels: 13
0.77 0.16 0.08
Matches are distributed among these distances:
89 2 0.02
90 68 0.54
91 56 0.44
92 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (90 bp):
TTTTAATGAATTCATAACCCAGGGTTTGGGTGGTCCTAGTAAGACGAATTTGATGAATTCATGAA
TTTATAAGATGAAACCACTAAATGC
Found at i:76131424 original size:2 final size:2
Alignment explanation
Indices: 76131419--76131452 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
76131409 TTCAGTCCAT
76131419 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76131453 AGACATTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:76134620 original size:2 final size:2
Alignment explanation
Indices: 76134613--76134637 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
76134603 AAATTGAAGG
76134613 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
76134638 CACAATGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76135146 original size:36 final size:37
Alignment explanation
Indices: 76135099--76135171 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 37
76135089 GCAAGAAAAA
76135099 CAATAGAATTGGCTGCCTGTTCC-GTTTTTTTTCTTT
1 CAATAGAATTGGCTGCCTGTTCCAGTTTTTTTTCTTT
* *
76135135 CAATAGAATTGGTTGCCTGTTCCATTTTTTTTTCTTT
1 CAATAGAATTGGCTGCCTGTTCCAGTTTTTTTTCTTT
76135172 TGTCCTTCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
36 22 0.65
37 12 0.35
ACGTcount: A:0.15, C:0.18, G:0.15, T:0.52
Consensus pattern (37 bp):
CAATAGAATTGGCTGCCTGTTCCAGTTTTTTTTCTTT
Found at i:76136758 original size:12 final size:12
Alignment explanation
Indices: 76136741--76136765 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76136731 AGCATCCTTG
76136741 TTTCATTTTCTT
1 TTTCATTTTCTT
76136753 TTTCATTTTCTT
1 TTTCATTTTCTT
76136765 T
1 T
76136766 CATTTTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTCATTTTCTT
Found at i:76141252 original size:12 final size:12
Alignment explanation
Indices: 76141235--76141268 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
76141225 CCGGCCGGCC
76141235 TATATTAATTTT
1 TATATTAATTTT
76141247 TATATT-ATTTT
1 TATATTAATTTT
76141258 TATA-TAATTTT
1 TATATTAATTTT
76141269 AAAATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 14 0.67
12 6 0.29
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATATTAATTTT
Found at i:76148516 original size:2 final size:2
Alignment explanation
Indices: 76148509--76148543 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
76148499 CCACATTGTT
76148509 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
76148544 TATTTAAGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:76149793 original size:16 final size:16
Alignment explanation
Indices: 76149772--76149802 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76149762 GATATTTTAA
76149772 TATATTATATTAATAT
1 TATATTATATTAATAT
*
76149788 TATATTATGTTAATA
1 TATATTATATTAATA
76149803 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:76149899 original size:12 final size:12
Alignment explanation
Indices: 76149882--76149912 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
76149872 GAAGCAGGGG
76149882 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
76149894 AGAAAAAGGGAA
1 AGAAAAAGAGAA
76149906 AGAAAAA
1 AGAAAAA
76149913 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:76151624 original size:17 final size:17
Alignment explanation
Indices: 76151602--76151648 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
76151592 ATACATGAAT
76151602 ATTAAGTTGTTAAATGA
1 ATTAAGTTGTTAAATGA
76151619 ATTAAGTTGTTAAATGA
1 ATTAAGTTGTTAAATGA
* *
76151636 ATGAAGTTTTTAA
1 ATTAAGTTGTTAA
76151649 TCAATTTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (17 bp):
ATTAAGTTGTTAAATGA
Found at i:76156057 original size:16 final size:16
Alignment explanation
Indices: 76156036--76156066 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
76156026 CATCCTATGG
76156036 ATCTTGTTAAAGTCGA
1 ATCTTGTTAAAGTCGA
76156052 ATCTTGTTAAAGTCG
1 ATCTTGTTAAAGTCG
76156067 GAAGAGGGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (16 bp):
ATCTTGTTAAAGTCGA
Found at i:76157261 original size:32 final size:30
Alignment explanation
Indices: 76157189--76157261 Score: 76
Period size: 32 Copynumber: 2.3 Consensus size: 30
76157179 CACTGATTAG
*
76157189 ATAAAAAATCAATAATTTAATTTTAAAAAA
1 ATAAAAAATTAATAATTTAATTTTAAAAAA
*
76157219 ATAAATAAATTAATACATGTTAA-TTTAATCAAA
1 ATAAA-AAATTAATA-AT-TTAATTTTAA-AAAA
*
76157252 TTAAAAAATT
1 ATAAAAAATT
76157262 GATTAAACCA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
30 5 0.14
31 8 0.22
32 12 0.33
33 11 0.31
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (30 bp):
ATAAAAAATTAATAATTTAATTTTAAAAAA
Found at i:76165689 original size:39 final size:39
Alignment explanation
Indices: 76165641--76165719 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
76165631 ATATTTAAAA
76165641 TAATTAATGGTATTATAAAAATTGACATACTAAATTATT
1 TAATTAATGGTATTATAAAAATTGACATACTAAATTATT
* *
76165680 TAATTAATGGTATTATAAAAATTGACGTACTAATTTATT
1 TAATTAATGGTATTATAAAAATTGACATACTAAATTATT
76165719 T
1 T
76165720 TAAAAATATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (39 bp):
TAATTAATGGTATTATAAAAATTGACATACTAAATTATT
Found at i:76179005 original size:16 final size:17
Alignment explanation
Indices: 76178986--76179019 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
76178976 AATATTTATT
76178986 TTTTATATTT-ATAATA
1 TTTTATATTTAATAATA
76179002 TTTTATATTTAATAATA
1 TTTTATATTTAATAATA
76179019 T
1 T
76179020 GGAATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTATATTTAATAATA
Found at i:76184650 original size:23 final size:25
Alignment explanation
Indices: 76184597--76184650 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
76184587 AAATTTTCAT
* *
76184597 ATTATTTATGTTTTTTATAATAATC
1 ATTATATATATTTTTTATAATAATC
* *
76184622 AATATATATATTTTTTA-AAT-TTC
1 ATTATATATATTTTTTATAATAATC
76184645 ATTATA
1 ATTATA
76184651 GATTTTGGTC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
23 7 0.29
24 3 0.12
25 14 0.58
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (25 bp):
ATTATATATATTTTTTATAATAATC
Found at i:76185660 original size:16 final size:16
Alignment explanation
Indices: 76185636--76185677 Score: 61
Period size: 14 Copynumber: 2.7 Consensus size: 16
76185626 GATTTAAATG
76185636 ATATTTTTATAAATTTT
1 ATATTTTTAT-AATTTT
76185653 AT-TTTTTAT-ATTTT
1 ATATTTTTATAATTTT
76185667 ATATTTTTATA
1 ATATTTTTATA
76185678 TAGTTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 7 0.30
15 7 0.30
16 7 0.30
17 2 0.09
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
ATATTTTTATAATTTT
Found at i:76185674 original size:15 final size:15
Alignment explanation
Indices: 76185636--76185678 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 15
76185626 GATTTAAATG
76185636 ATATTTTTATAAATTTT
1 ATATTTTTAT--ATTTT
76185653 AT-TTTTTATATTTT
1 ATATTTTTATATTTT
76185667 ATATTTTTATAT
1 ATATTTTTATAT
76185679 AGTTTTTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.28
15 9 0.36
16 7 0.28
17 2 0.08
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATATTTTTATATTTT
Found at i:76187275 original size:10 final size:9
Alignment explanation
Indices: 76187259--76187295 Score: 56
Period size: 10 Copynumber: 3.9 Consensus size: 9
76187249 TAATGTAAAT
76187259 AAATTTTTA
1 AAATTTTTA
76187268 ATAATTTTTA
1 A-AATTTTTA
76187278 AAATTTTTA
1 AAATTTTTA
76187287 AACATTTTT
1 AA-ATTTTT
76187296 GGATGTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 11 0.42
10 15 0.58
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (9 bp):
AAATTTTTA
Found at i:76191556 original size:14 final size:14
Alignment explanation
Indices: 76191537--76191565 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
76191527 TTGTTTCTCA
76191537 CTGTCATATGCTAC
1 CTGTCATATGCTAC
76191551 CTGTCATATGCTAC
1 CTGTCATATGCTAC
76191565 C
1 C
76191566 AACATTCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.31, G:0.14, T:0.34
Consensus pattern (14 bp):
CTGTCATATGCTAC
Found at i:76192816 original size:2 final size:2
Alignment explanation
Indices: 76192809--76192835 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76192799 ATTTATAATA
76192809 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
76192836 AATTGAAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76207735 original size:27 final size:27
Alignment explanation
Indices: 76207697--76207752 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
76207687 CTACCTAAAG
76207697 TTAGCAAATTCCTAATATTCAGGTTCA
1 TTAGCAAATTCCTAATATTCAGGTTCA
76207724 TTAGCAAATTCCTAATATTCAGGTTCA
1 TTAGCAAATTCCTAATATTCAGGTTCA
76207751 TT
1 TT
76207753 TACATCAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (27 bp):
TTAGCAAATTCCTAATATTCAGGTTCA
Found at i:76214523 original size:5 final size:6
Alignment explanation
Indices: 76214510--76214562 Score: 79
Period size: 6 Copynumber: 8.5 Consensus size: 6
76214500 ATAATTTAAT
*
76214510 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATAA
76214560 AAA
1 AAA
76214563 ACATATAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 38 0.88
8 5 0.12
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:76214600 original size:9 final size:9
Alignment explanation
Indices: 76214582--76214658 Score: 91
Period size: 9 Copynumber: 8.6 Consensus size: 9
76214572 TTTATACAAA
76214582 TAATTCGGT
1 TAATTCGGT
*
76214591 TAATTTGGT
1 TAATTCGGT
*
76214600 TAATTCAGT
1 TAATTCGGT
* *
76214609 TAATTTGGG
1 TAATTCGGT
*
76214618 TAATTCGGG
1 TAATTCGGT
76214627 TAATTCGGT
1 TAATTCGGT
**
76214636 TAATTCAAT
1 TAATTCGGT
76214645 TAATTCGGT
1 TAATTCGGT
76214654 TAATT
1 TAATT
76214659 TTATACTTAT
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 56 1.00
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.45
Consensus pattern (9 bp):
TAATTCGGT
Found at i:76215155 original size:21 final size:21
Alignment explanation
Indices: 76215116--76215156 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
76215106 TGTAAATTGG
*
76215116 ATTAAATTGAGTATGAATTTC
1 ATTAAATTGAGTATAAATTTC
76215137 ATTAAATTGATGT-TAAATTT
1 ATTAAATTGA-GTATAAATTT
76215157 ACTCATATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.46
Consensus pattern (21 bp):
ATTAAATTGAGTATAAATTTC
Found at i:76215637 original size:33 final size:33
Alignment explanation
Indices: 76215595--76215682 Score: 158
Period size: 33 Copynumber: 2.7 Consensus size: 33
76215585 TTTCAATTAG
*
76215595 GATTTAGCCTGGACTGATAATCCTAATTGACTA
1 GATTTAGCCTGGACTGGTAATCCTAATTGACTA
76215628 GATTTAGCCTGGACTGGTAATCCTAATTGACTA
1 GATTTAGCCTGGACTGGTAATCCTAATTGACTA
*
76215661 GATTTAGCCTAGACTGGTAATC
1 GATTTAGCCTGGACTGGTAATC
76215683 TAACAAAGCC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (33 bp):
GATTTAGCCTGGACTGGTAATCCTAATTGACTA
Found at i:76219597 original size:39 final size:39
Alignment explanation
Indices: 76219549--76219766 Score: 355
Period size: 39 Copynumber: 5.6 Consensus size: 39
76219539 GCTCTGATGA
*
76219549 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGTACTTGTGT
* *
76219588 GCTTTAGTTAGCCTTCGGGCTTCCATTTAGTACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGTACTTGTGT
*
76219627 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAATACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGTACTTGTGT
*
76219666 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAATACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGTACTTGTGT
* *
76219705 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGTACTTGTGT
* *
76219744 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
76219767 AGATCACGAT
Statistics
Matches: 168, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 168 1.00
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGTACTTGTGT
Found at i:76225477 original size:19 final size:19
Alignment explanation
Indices: 76225453--76225492 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
76225443 AGTAAAGAGT
*
76225453 AAAAGATGAAATGAAAATA
1 AAAAGATGAAATAAAAATA
76225472 AAAAGATGAAATAAAAATA
1 AAAAGATGAAATAAAAATA
76225491 AA
1 AA
76225493 TAACAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.15
Consensus pattern (19 bp):
AAAAGATGAAATAAAAATA
Found at i:76226395 original size:17 final size:16
Alignment explanation
Indices: 76226370--76226422 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 16
76226360 ATAGCTTAAG
76226370 AAAATTAATATAAAATCT
1 AAAA-TAATATAAAAT-T
*
76226388 AAAATAATA-ATAATT
1 AAAATAATATAAAATT
76226403 -AAA-AA-ATAAAATT
1 AAAATAATATAAAATT
76226416 AAAATAA
1 AAAATAA
76226423 ACTTAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
12 1 0.03
13 7 0.23
14 6 0.20
15 3 0.10
16 4 0.13
17 5 0.17
18 4 0.13
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAATAATATAAAATT
Found at i:76231562 original size:17 final size:16
Alignment explanation
Indices: 76231537--76231589 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 16
76231527 ATAGCTTAAG
76231537 AAAATTAATATAAAATCT
1 AAAA-TAATATAAAAT-T
*
76231555 AAAATAATA-ATAATT
1 AAAATAATATAAAATT
76231570 -AAA-AA-ATAAAATT
1 AAAATAATATAAAATT
76231583 AAAATAA
1 AAAATAA
76231590 ACTTAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
12 1 0.03
13 7 0.23
14 6 0.20
15 3 0.10
16 4 0.13
17 5 0.17
18 4 0.13
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAATAATATAAAATT
Found at i:76243889 original size:18 final size:18
Alignment explanation
Indices: 76243866--76243908 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
76243856 CGGAAGAAAC
*
76243866 ATAAAAAGTAATTTTGAA
1 ATAAAAAATAATTTTGAA
* *
76243884 ATAAAAAATACTTTTGAC
1 ATAAAAAATAATTTTGAA
76243902 ATAAAAA
1 ATAAAAA
76243909 TATTATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (18 bp):
ATAAAAAATAATTTTGAA
Found at i:76244976 original size:30 final size:30
Alignment explanation
Indices: 76244928--76244985 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
76244918 TATGTACAGA
*
76244928 AATAATTATATTTATTTAATATAAAAATTT
1 AATAATTATATTTATTTAAAATAAAAATTT
* *
76244958 AATATATT-TATTTTTTTAAAATATAAAT
1 AATA-ATTATATTTATTTAAAATAAAAAT
76244986 AATTAAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (30 bp):
AATAATTATATTTATTTAAAATAAAAATTT
Found at i:76245520 original size:15 final size:15
Alignment explanation
Indices: 76245500--76245548 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
76245490 TGTCATTGAT
76245500 AATTTTTTTACTTTA
1 AATTTTTTTACTTTA
* *
76245515 AA-TTTTTAAATTTA
1 AATTTTTTTACTTTA
*
76245529 AACTTTTTTACTTTA
1 AATTTTTTTACTTTA
76245544 AATTT
1 AATTT
76245549 AAAACTTGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
AATTTTTTTACTTTA
Found at i:76245635 original size:24 final size:24
Alignment explanation
Indices: 76245608--76245654 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
76245598 AAAATTATAT
76245608 ATTAATGACACAAATATAAATGTC
1 ATTAATGACACAAATATAAATGTC
76245632 ATTAATGACACAAATATAAATGT
1 ATTAATGACACAAATATAAATGT
76245655 AATGACAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.30
Consensus pattern (24 bp):
ATTAATGACACAAATATAAATGTC
Found at i:76245906 original size:29 final size:29
Alignment explanation
Indices: 76245872--76245930 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
76245862 AAAAGAATAA
76245872 CAAACGAGATTATTCCTCCTTAAAAACAT
1 CAAACGAGATTATTCCTCCTTAAAAACAT
76245901 CAAACGAGATTATTCCTCCTTAAAAACAT
1 CAAACGAGATTATTCCTCCTTAAAAACAT
76245930 C
1 C
76245931 CAACTAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.25, G:0.07, T:0.27
Consensus pattern (29 bp):
CAAACGAGATTATTCCTCCTTAAAAACAT
Found at i:76246030 original size:37 final size:37
Alignment explanation
Indices: 76245980--76246051 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
76245970 TATCCAGAAG
*
76245980 AGAAATTCAGATTTGCCTTAGCAATTTGATTCAACAA
1 AGAAATTCAGATTTGCCTTAGCAAATTGATTCAACAA
76246017 AGAAATTCAGATTTGCCTTAGCAAATTGATTCAAC
1 AGAAATTCAGATTTGCCTTAGCAAATTGATTCAAC
76246052 TCACTACTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.32
Consensus pattern (37 bp):
AGAAATTCAGATTTGCCTTAGCAAATTGATTCAACAA
Found at i:76247791 original size:23 final size:23
Alignment explanation
Indices: 76247765--76247808 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
76247755 TGAAAGAGCC
76247765 TTTCACCTTCTAATTTATTAGAG
1 TTTCACCTTCTAATTTATTAGAG
**
76247788 TTTCGTCTTCTAATTTATTAG
1 TTTCACCTTCTAATTTATTAG
76247809 GGTTCCGTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.16, G:0.09, T:0.52
Consensus pattern (23 bp):
TTTCACCTTCTAATTTATTAGAG
Found at i:76247817 original size:23 final size:23
Alignment explanation
Indices: 76247771--76247819 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
76247761 AGCCTTTCAC
*
76247771 CTTCTAATTTATTAGAGTTTCGT
1 CTTCTAATTTATTAGAGTTCCGT
*
76247794 CTTCTAATTTATTAGGGTTCCGT
1 CTTCTAATTTATTAGAGTTCCGT
76247817 CTT
1 CTT
76247820 AGATAAGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.51
Consensus pattern (23 bp):
CTTCTAATTTATTAGAGTTCCGT
Found at i:76254419 original size:21 final size:22
Alignment explanation
Indices: 76254391--76254441 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
76254381 AAAAATATAT
* *
76254391 AATT-AATAGAATTGATTT-TA
1 AATTAAATAGAATTAATTTCAA
76254411 AATTAAATAGAATTAATTTCAA
1 AATTAAATAGAATTAATTTCAA
76254433 AATTAAATA
1 AATTAAATA
76254442 ATAAAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 4 0.15
21 13 0.48
22 10 0.37
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (22 bp):
AATTAAATAGAATTAATTTCAA
Found at i:76255018 original size:14 final size:14
Alignment explanation
Indices: 76254999--76255033 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
76254989 AAAATAAACT
76254999 TTTTTTAAAATTTA
1 TTTTTTAAAATTTA
76255013 TTTTTT-AAATTTA
1 TTTTTTAAAATTTA
76255026 TATTTTTA
1 T-TTTTTA
76255034 TCCAGATCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTTTAAAATTTA
Done.