Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 265 of 292
Found at i:76256958 original size:3 final size:3
Alignment explanation
Indices: 76256945--76257066 Score: 92
Period size: 3 Copynumber: 39.3 Consensus size: 3
76256935 GAGGGCATAT
*
76256945 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATA AGAA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -ATA A-TA ATA ATA
*
76256992 ATA ATA AT- ATAA ATA ATA ATA TATA CATA AGAA ATA ATA ATA ATA AT-
1 ATA ATA ATA AT-A ATA ATA ATA -ATA -ATA A-TA ATA ATA ATA ATA ATA
* *
76257039 ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
76257067 AAAAATAAAA
Statistics
Matches: 97, Mismatches: 10, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
2 10 0.10
3 65 0.67
4 22 0.23
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:76256971 original size:18 final size:18
Alignment explanation
Indices: 76256941--76257062 Score: 129
Period size: 18 Copynumber: 6.4 Consensus size: 18
76256931 TGGAGAGGGC
76256941 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
76256959 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
*
76256978 CATAAGAAATAATAATAATA
1 -AT-ATAAATAATAATAATA
76256998 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
*
76257017 CATAAGAAATAATAATAATA
1 -AT-ATAAATAATAATAATA
* *
76257037 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
76257055 ATAATAAA
1 AT-ATAAA
76257063 ATAAAAAAAT
Statistics
Matches: 90, Mismatches: 6, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
17 3 0.03
18 38 0.42
19 15 0.17
20 10 0.11
21 24 0.27
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:76257004 original size:39 final size:39
Alignment explanation
Indices: 76256950--76257048 Score: 198
Period size: 39 Copynumber: 2.5 Consensus size: 39
76256940 CATATATAAT
76256950 ATAATAATAATATAAATAATAATATATACATAAGAAATA
1 ATAATAATAATATAAATAATAATATATACATAAGAAATA
76256989 ATAATAATAATATAAATAATAATATATACATAAGAAATA
1 ATAATAATAATATAAATAATAATATATACATAAGAAATA
76257028 ATAATAATAATATAAATAATA
1 ATAATAATAATATAAATAATA
76257049 GTAAAAATAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 60 1.00
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (39 bp):
ATAATAATAATATAAATAATAATATATACATAAGAAATA
Found at i:76257553 original size:31 final size:31
Alignment explanation
Indices: 76257513--76257590 Score: 129
Period size: 31 Copynumber: 2.5 Consensus size: 31
76257503 GGTTTAGTAT
*
76257513 AGTGATTTAGTGGAGTGGTTAGAGTGGTTGG
1 AGTGGTTTAGTGGAGTGGTTAGAGTGGTTGG
* *
76257544 AGTGGTTTAGTGGAGTGGTTGGAGTGTTTGG
1 AGTGGTTTAGTGGAGTGGTTAGAGTGGTTGG
76257575 AGTGGTTTAGTGGAGT
1 AGTGGTTTAGTGGAGT
76257591 AAAGATATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.17, C:0.00, G:0.46, T:0.37
Consensus pattern (31 bp):
AGTGGTTTAGTGGAGTGGTTAGAGTGGTTGG
Found at i:76257566 original size:9 final size:9
Alignment explanation
Indices: 76257523--76257581 Score: 64
Period size: 9 Copynumber: 6.1 Consensus size: 9
76257513 AGTGATTTAG
76257523 TGGAGTGGT
1 TGGAGTGGT
*
76257532 TAGAGTGGT
1 TGGAGTGGT
76257541 TGGAGTGGTTT
1 TGGAGTGG--T
76257552 AGTGGAGTGGT
1 --TGGAGTGGT
*
76257563 TGGAGTGTT
1 TGGAGTGGT
76257572 TGGAGTGGT
1 TGGAGTGGT
76257581 T
1 T
76257582 TAGTGGAGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
9 32 0.76
11 2 0.05
13 8 0.19
ACGTcount: A:0.14, C:0.00, G:0.49, T:0.37
Consensus pattern (9 bp):
TGGAGTGGT
Found at i:76257590 original size:13 final size:13
Alignment explanation
Indices: 76257460--76257563 Score: 65
Period size: 13 Copynumber: 7.9 Consensus size: 13
76257450 TTTGTAGGCA
76257460 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
76257473 AGTAGG-GTGG-TT
1 AGT-GGAGTGGTTT
*
76257485 -G-GG-GTGATTT
1 AGTGGAGTGGTTT
*
76257495 AGTGGAATGGTTT
1 AGTGGAGTGGTTT
** *
76257508 AGTATAGTGATTT
1 AGTGGAGTGGTTT
76257521 AGTGGAGTGGTTAGAGT
1 AGTGGAGTGGTT----T
*
76257538 GGTTGGAGTGGTTT
1 AG-TGGAGTGGTTT
76257552 AGTGGAGTGGTT
1 AGTGGAGTGGTT
76257564 GGAGTGTTTG
Statistics
Matches: 69, Mismatches: 12, Indels: 20
0.68 0.12 0.20
Matches are distributed among these distances:
9 5 0.07
10 2 0.03
11 2 0.03
12 4 0.06
13 40 0.58
14 4 0.06
17 2 0.03
18 10 0.14
ACGTcount: A:0.18, C:0.00, G:0.44, T:0.38
Consensus pattern (13 bp):
AGTGGAGTGGTTT
Found at i:76258110 original size:132 final size:132
Alignment explanation
Indices: 76257884--76258988 Score: 1851
Period size: 132 Copynumber: 8.4 Consensus size: 132
76257874 GGGATGCCAA
* * *
76257884 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTT-AACTTG
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGT-TTTCAACTTG
* * *
76257947 TTCCCTATAAGCACAGGGATTCCATGTTGAAATCTTCGATCTGCTTCACCGTAAGCACAGGAATG
64 TTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATG
76258012 TCAG
129 TCAG
* *
76258016 ATCTGCTATCTTCGATCTGTTCCCTATAAGCAC-GTGGATGCCAAATTTGCTATTTTCAACTTGT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAG-GGATGCCAAATCTGCTGTTTTCAACTTGT
76258080 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
65 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
76258145 CAG
130 CAG
76258148 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTT
* *
76258213 CCCTATAAGCACAGTGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGAAATGTC
66 CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
76258278 AG
131 AG
* * *
76258280 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGTTATCTTCAACTTGTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTT
*
76258345 CCCTTTAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCA-TCGTAAGCACAGGAATGT
66 CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACT-GTAAGCACAGGAATGT
76258409 CAG
130 CAG
* * *
76258412 TTCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTT
*
76258477 CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCACAGGAATGTC
66 CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
76258542 AG
131 AG
*
76258544 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATTTGCTGTTTTCAACTTGTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTT
76258609 CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
66 CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
76258674 AG
131 AG
76258676 ATCTGCTATCTTCGATCTGTTCCCTATAAGCAC-GGGATGCCAAATCTGCTGTTTTCAACTTGTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTT
*
76258740 CCCTATAAGCACAGGGATGCCATGCTGAAATTTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
66 CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
76258805 AG
131 AG
** * * * *
76258807 ATCTATTATCTTCGATCTATTCCCTATAAGCAAAGGGATGCCAAACCTACTGTTTTCAACTTGTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTT
* * *
76258872 CCCTATAAGCACAGGGATGCCATGCTGAAATTTTCGATCTGCTTCACTGTAAACACATGAATGTC
66 CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
76258937 AG
131 AG
* * *
76258939 ATCTACTATCTTCGATCTGTTCTCTATAAACACAGGGATGCCAAATCTGC
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGC
76258989 AATCTTCGAT
Statistics
Matches: 922, Mismatches: 44, Indels: 14
0.94 0.04 0.01
Matches are distributed among these distances:
131 130 0.14
132 789 0.86
133 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (132 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTT
CCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
AG
Found at i:76258994 original size:44 final size:44
Alignment explanation
Indices: 76257841--76259001 Score: 915
Period size: 44 Copynumber: 26.4 Consensus size: 44
76257831 TGAGTTCTTG
* **
76257841 ATCTGCT-TCTTCGATCTGTTCCCCATAAATACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
76257884 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* * * *
76257928 ATCTGCTATCTT-TAACTTGTTCCCTATAAGCACAGGGATTCCAT
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* ** * * * *
76257972 GT-TGAAATCTTCGATCTGCTTCACC-GTAAGCACAGGAATGTCAG
1 ATCTGCTATCTTCGATCTG-TTC-CCTATAAGCACAGGGATGCCAA
76258016 ATCTGCTATCTTCGATCTGTTCCCTATAAGCAC-GTGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAG-GGATGCCAA
* * *
76258060 ATTTGCTATTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
76258102 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
76258148 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
76258192 ATCTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGTGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * ** * *
76258234 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGAAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
76258280 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
76258324 ATCTGTTATCTTC-AACTTGTTCCCTTTAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
76258366 ATGCTGAAATCTTCGATCTGCTT-CATCGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCT-ATAAGCACAGGGATGCCAA
* *
76258412 TTCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
76258456 ATCTGTTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * *
76258498 ATGCTGAAATCTTCGATCTGCTTCACC-GTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTC-CCTATAAGCACAGGGATGCCAA
76258544 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
76258588 ATTTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
76258630 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
76258676 ATCTGCTATCTTCGATCTGTTCCCTATAAGCAC-GGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
76258719 ATCTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * * *
76258761 ATGCTGAAATTTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
** * *
76258807 ATCTATTATCTTCGATCTATTCCCTATAAGCAAAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * * *
76258851 ACCTACTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * * * * *
76258893 ATGCTGAAATTTTCGATCTGCTTCACTGTAAACACATGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* * *
76258939 ATCTACTATCTTCGATCTGTTCTCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
*
76258983 ATCTGCAATCTTCGATCTG
1 ATCTGCTATCTTCGATCTG
76259002 CTCTCCGCCG
Statistics
Matches: 884, Mismatches: 177, Indels: 113
0.75 0.15 0.10
Matches are distributed among these distances:
42 15 0.02
43 135 0.15
44 601 0.68
45 120 0.14
46 13 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:76259390 original size:206 final size:205
Alignment explanation
Indices: 76259013--76259461 Score: 702
Period size: 206 Copynumber: 2.2 Consensus size: 205
76259003 TCTCCGCCGC
* * * *
76259013 TACAGAGACGCCAAATTATCTTGGATTTG-TTTCAACGTAAACACTTGAAAGCCAAATCAGCTAT
1 TACAGAGATGCCAAATCATCTTAGATTTGCTTT-AACGTAAACACGTGAAAGCCAAATCAGCTAT
* * *
76259077 GTCTTCGATTTGCTCCTTTTAAGCATAAGGATGACAAACCATCTTGGATCTGCTTCAGTATAAAC
65 GTCTTCGATTTGCTCCTTGTAAGCACAAGGATGACAAACCATCTTGGATCTACTTCAGTATAAAC
*
76259142 ATTTGAAGGTTGGATCCGCTATGTGTCTACCCTCCATCGAAGTAGAGATGCCAGACTTCAATTTG
130 ATCTGAAGGTTGGATCCGCTATGTGTCTACCCTCCATCGAAGTAGAGATGCCAGACTTCAATTTG
76259207 TTCTCTGACAA
195 TTCTCTGACAA
* *
76259218 TACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCACGTGAACGCCAAATCAGCTATG
1 TACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAACACGTGAAAGCCAAATCAGCTATG
*
76259283 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAAACCATCTTGGATCTACTTCAGTATAAAC
66 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGAC-AAACCATCTTGGATCTACTTCAGTATAAAC
* * * * * * *
76259348 ATCTGAAGGTTGGATCTGCTATGTGTCTGCCTTCCGTCGAAGTGGAGATGCTAGACTTCGATTTG
130 ATCTGAAGGTTGGATCCGCTATGTGTCTACCCTCCATCGAAGTAGAGATGCCAGACTTCAATTTG
76259413 TTCTCTGACAA
195 TTCTCTGACAA
*
76259424 TACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGT
1 TACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGT
76259462 TGTAACACCC
Statistics
Matches: 223, Mismatches: 19, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
205 86 0.39
206 137 0.61
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (205 bp):
TACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAACACGTGAAAGCCAAATCAGCTATG
TCTTCGATTTGCTCCTTGTAAGCACAAGGATGACAAACCATCTTGGATCTACTTCAGTATAAACA
TCTGAAGGTTGGATCCGCTATGTGTCTACCCTCCATCGAAGTAGAGATGCCAGACTTCAATTTGT
TCTCTGACAA
Found at i:76260714 original size:53 final size:53
Alignment explanation
Indices: 76260633--76260783 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
76260623 CTTACACGGT
* *
76260633 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
76260688 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
76260741 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
76260784 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:76267376 original size:19 final size:20
Alignment explanation
Indices: 76267352--76267398 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
76267342 AGTGAAATTT
76267352 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
76267371 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
76267391 -AATGCAAA
1 TAATGCAAA
76267399 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:76269807 original size:21 final size:21
Alignment explanation
Indices: 76269781--76269836 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
76269771 TACACACTAC
76269781 TATATAATAATAATAAAAAAA
1 TATATAATAATAATAAAAAAA
76269802 TATATAGA-AATACA-AAAAAAA
1 TATATA-ATAATA-ATAAAAAAA
*
76269823 -ATATAATAAAAATA
1 TATATAATAATAATA
76269837 TTAAATTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
19 2 0.07
20 9 0.30
21 17 0.57
22 2 0.07
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (21 bp):
TATATAATAATAATAAAAAAA
Found at i:76269807 original size:23 final size:22
Alignment explanation
Indices: 76269781--76269833 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
76269771 TACACACTAC
76269781 TATATAATAATAATAAAAAAATA
1 TATATAA-AATAATAAAAAAATA
* *
76269804 TATA-GAAATACAAAAAAAAATA
1 TATATAAAATA-ATAAAAAAATA
76269826 TA-ATAAAA
1 TATATAAAA
76269834 ATATTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 5 0.20
22 16 0.64
23 4 0.16
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (22 bp):
TATATAAAATAATAAAAAAATA
Found at i:76270008 original size:3 final size:3
Alignment explanation
Indices: 76270000--76270057 Score: 55
Period size: 3 Copynumber: 18.0 Consensus size: 3
76269990 AATAGAGGTG
*
76270000 ATA ATA ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA ATA CATA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -ATA
76270047 TATA TATA ATA
1 -ATA -ATA ATA
76270058 GTAGTCAGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
2 1 0.02
3 34 0.68
4 15 0.30
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:76270145 original size:3 final size:3
Alignment explanation
Indices: 76270132--76270206 Score: 50
Period size: 3 Copynumber: 24.3 Consensus size: 3
76270122 GAGGGCATAT
76270132 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
76270176 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA A
76270207 AAAAATAAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
2 7 0.12
3 40 0.69
4 9 0.16
5 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:76270154 original size:12 final size:12
Alignment explanation
Indices: 76270130--76270206 Score: 57
Period size: 12 Copynumber: 5.8 Consensus size: 12
76270120 GAGAGGGCAT
76270130 ATATAATATAATA
1 ATATAA-ATAATA
76270143 ATATAAATAATA
1 ATATAAATAATA
76270155 ATATATACATGAGA-A
1 ATATA-A-AT-A-ATA
76270170 ATAATAATAATAATA
1 AT-AT-A-AATAATA
76270185 ATATAAATAATA
1 ATATAAATAATA
* *
76270197 GTAAAAATAA
1 ATATAAATAA
76270207 AAAAATAAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
12 26 0.47
13 8 0.15
14 5 0.09
15 8 0.15
16 5 0.09
17 3 0.05
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:76270643 original size:13 final size:13
Alignment explanation
Indices: 76270606--76270715 Score: 76
Period size: 13 Copynumber: 8.7 Consensus size: 13
76270596 TTTGTAGGCA
76270606 AGTGGAGTGG-TT
1 AGTGGAGTGGTTT
76270618 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
*
76270628 AGTGGAGTGATTT
1 AGTGGAGTGGTTT
76270641 AGTAGG-GTGG-TT
1 AGT-GGAGTGGTTT
76270653 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
76270663 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
*
76270676 AGTGGAGTAGTTAGAGT
1 AGTGGAGTGGTT----T
*
76270693 GGTTGGAGTGGTTT
1 AG-TGGAGTGGTTT
76270707 AGTGGAGTG
1 AGTGGAGTG
76270716 ATTGGAGTGT
Statistics
Matches: 78, Mismatches: 6, Indels: 27
0.70 0.05 0.24
Matches are distributed among these distances:
9 10 0.13
10 6 0.08
11 4 0.05
12 6 0.08
13 37 0.47
14 4 0.05
17 2 0.03
18 9 0.12
ACGTcount: A:0.15, C:0.00, G:0.49, T:0.35
Consensus pattern (13 bp):
AGTGGAGTGGTTT
Found at i:76270658 original size:35 final size:35
Alignment explanation
Indices: 76270612--76270678 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
76270602 GGCAAGTGGA
76270612 GTGGTTGGGGTGGTTTAGTGGAGTGATTTAGTAGG
1 GTGGTTGGGGTGGTTTAGTGGAGTGATTTAGTAGG
*
76270647 GTGGTTGGGGTGGTTTAGTGGAGTGGTTTAGT
1 GTGGTTGGGGTGGTTTAGTGGAGTGATTTAGT
76270679 GGAGTAGTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.12, C:0.00, G:0.49, T:0.39
Consensus pattern (35 bp):
GTGGTTGGGGTGGTTTAGTGGAGTGATTTAGTAGG
Found at i:76270672 original size:22 final size:22
Alignment explanation
Indices: 76270630--76270724 Score: 95
Period size: 22 Copynumber: 4.3 Consensus size: 22
76270620 GGTGGTTTAG
*
76270630 TGGAGTGATTTAGTAGG-GTGGT
1 TGGAGTGGTTTAGT-GGAGTGGT
*
76270652 TGGGGTGGTTTAGTGGAGTGGT
1 TGGAGTGGTTTAGTGGAGTGGT
* ** *
76270674 T-TAGTGGAGTAGTTAGAGTGGT
1 TGGAGTGGTTTAG-TGGAGTGGT
*
76270696 TGGAGTGGTTTAGTGGAGTGAT
1 TGGAGTGGTTTAGTGGAGTGGT
76270718 TGGAGTG
1 TGGAGTG
76270725 TTTGGAGTGG
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
21 9 0.16
22 41 0.71
23 8 0.14
ACGTcount: A:0.17, C:0.00, G:0.47, T:0.36
Consensus pattern (22 bp):
TGGAGTGGTTTAGTGGAGTGGT
Found at i:76270696 original size:44 final size:47
Alignment explanation
Indices: 76270621--76270715 Score: 142
Period size: 44 Copynumber: 2.1 Consensus size: 47
76270611 AGTGGTTGGG
* *
76270621 GTGGTTTAGTGGAGTGATTTAGTAGGGTGGTTGGGGTGGTTTAGTGGA
1 GTGGTTTAGTGGAGTGAGTTAGTA-GGTGGTTGGAGTGGTTTAGTGGA
76270669 GTGGTTTAGTGGAGT-AGTTAG-A-GTGGTTGGAGTGGTTTAGTGGA
1 GTGGTTTAGTGGAGTGAGTTAGTAGGTGGTTGGAGTGGTTTAGTGGA
76270713 GTG
1 GTG
76270716 ATTGGAGTGT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
44 24 0.53
46 1 0.02
47 5 0.11
48 15 0.33
ACGTcount: A:0.16, C:0.00, G:0.47, T:0.37
Consensus pattern (47 bp):
GTGGTTTAGTGGAGTGAGTTAGTAGGTGGTTGGAGTGGTTTAGTGGA
Found at i:76270703 original size:31 final size:32
Alignment explanation
Indices: 76270665--76270746 Score: 132
Period size: 31 Copynumber: 2.6 Consensus size: 32
76270655 GGTGGTTTAG
76270665 TGGAGTGGTTTAGTGGAGTAG-TTAGAGTGGT
1 TGGAGTGGTTTAGTGGAGTAGATTAGAGTGGT
* *
76270696 TGGAGTGGTTTAGTGGAGT-GATTGGAGTGTT
1 TGGAGTGGTTTAGTGGAGTAGATTAGAGTGGT
76270727 TGGAGTGGTTTAGTGGAGTA
1 TGGAGTGGTTTAGTGGAGTA
76270747 AAGATATTTG
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
30 1 0.02
31 46 0.98
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.37
Consensus pattern (32 bp):
TGGAGTGGTTTAGTGGAGTAGATTAGAGTGGT
Found at i:76277449 original size:16 final size:15
Alignment explanation
Indices: 76277411--76277451 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
76277401 ATTTATCAAT
*
76277411 TAAATAATTATATTA
1 TAAATAATTATATAA
76277426 TAAGATAATTATATAA
1 TAA-ATAATTATATAA
76277442 GTAAATAATT
1 -TAAATAATT
76277452 TAATTATGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 3 0.13
16 17 0.74
17 3 0.13
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (15 bp):
TAAATAATTATATAA
Found at i:76278905 original size:18 final size:18
Alignment explanation
Indices: 76278853--76278905 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
76278843 TGTTGCTATG
* *
76278853 GAATAATTGACTGTTACT
1 GAATAAATGACTGTTATT
76278871 GAATAAATGACTGTTATT
1 GAATAAATGACTGTTATT
* *
76278889 GTATAACTGACTGTTAT
1 GAATAAATGACTGTTAT
76278906 AGAGTAACTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (18 bp):
GAATAAATGACTGTTATT
Found at i:76278913 original size:18 final size:16
Alignment explanation
Indices: 76278855--76278916 Score: 52
Period size: 18 Copynumber: 3.5 Consensus size: 16
76278845 TTGCTATGGA
*
76278855 ATAATTGACTGTTACTG
1 ATAACTGACTGTTA-TG
*
76278872 AATAAATGACTGTTATTG
1 -ATAACTGACTGTTA-TG
76278890 TATAACTGACTGTTATAG
1 -ATAACTGACTGTTAT-G
76278908 AGTAACTGA
1 A-TAACTGA
76278917 ATGCTACTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
17 2 0.05
18 36 0.95
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (16 bp):
ATAACTGACTGTTATG
Found at i:76285817 original size:23 final size:21
Alignment explanation
Indices: 76285773--76285817 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
76285763 ACGCGTTTTG
*
76285773 TTTTTATATATTATCTTCTAA
1 TTTTTATATATTATATTCTAA
*
76285794 TTTTTATATAATTTATATTTTAA
1 TTTTTATAT-A-TTATATTCTAA
76285817 T
1 T
76285818 GCCGATTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 1 0.05
23 10 0.50
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTTATATATTATATTCTAA
Found at i:76286124 original size:19 final size:20
Alignment explanation
Indices: 76286100--76286142 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
76286090 TAAATTATGA
76286100 AATTTTT-ATAAA-TATTTTG
1 AATTTTTGA-AAATTATTTTG
76286119 AATTTTTGAAAATTATTTTG
1 AATTTTTGAAAATTATTTTG
76286139 AATT
1 AATT
76286143 ATTTTGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
AATTTTTGAAAATTATTTTG
Found at i:76286125 original size:20 final size:20
Alignment explanation
Indices: 76286097--76286147 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
76286087 AAATAAATTA
*
76286097 TGAAATTTTTATAAA-TATTT
1 TGAATTTTTTA-AAATTATTT
*
76286117 TGAATTTTTGAAAATTATTT
1 TGAATTTTTTAAAATTATTT
76286137 TGAATTATTTT
1 TGAATT-TTTT
76286148 GTATTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 3 0.12
20 20 0.77
21 3 0.12
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (20 bp):
TGAATTTTTTAAAATTATTT
Found at i:76296175 original size:26 final size:26
Alignment explanation
Indices: 76296145--76296210 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 26
76296135 ATGAGTGAAT
76296145 TTAATTTTATCTTTTATTAAAAATAA
1 TTAATTTTATCTTTTATTAAAAATAA
* *
76296171 TTAATTTT-T-ATAT-TTAAAAATAA
1 TTAATTTTATCTTTTATTAAAAATAA
*
76296194 TATAAATTTATCTTTTA
1 T-TAATTTTATCTTTTA
76296211 ATTTTAGATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
23 11 0.35
24 8 0.26
25 2 0.06
26 10 0.32
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (26 bp):
TTAATTTTATCTTTTATTAAAAATAA
Found at i:76297566 original size:46 final size:44
Alignment explanation
Indices: 76297462--76297569 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
76297452 TGTCTTTGAC
** * * *
76297462 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
76297506 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
76297552 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
76297570 TTTCTGTTTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:76304878 original size:44 final size:45
Alignment explanation
Indices: 76304825--76304924 Score: 130
Period size: 44 Copynumber: 2.2 Consensus size: 45
76304815 TCTTTGACAT
* * *
76304825 GACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAATATG
1 GACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAATATG
** *
76304869 GACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAATATG
1 GACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAATATG
76304915 GACTTACATG
1 GACTTACATG
76304925 GCTCATTTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
44 30 0.62
46 18 0.38
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (45 bp):
GACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAATATG
Found at i:76304926 original size:46 final size:44
Alignment explanation
Indices: 76304841--76304929 Score: 142
Period size: 46 Copynumber: 2.0 Consensus size: 44
76304831 CATGAATTAT
*
76304841 TCCTGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAA
*
76304885 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TCCTGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
76304930 TTTCTGTTCT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 18 0.44
46 23 0.56
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (44 bp):
TCCTGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAA
Found at i:76315456 original size:19 final size:19
Alignment explanation
Indices: 76315434--76315472 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
76315424 AAAATTACAA
76315434 AAAAATT-CAAAATATTTAT
1 AAAAATTCCAAAA-ATTTAT
*
76315453 AAAATTTCCAAAAATTTAT
1 AAAAATTCCAAAAATTTAT
76315472 A
1 A
76315473 TAATCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATTCCAAAAATTTAT
Found at i:76322430 original size:34 final size:33
Alignment explanation
Indices: 76322388--76322452 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 33
76322378 TCTGACAAAC
76322388 ACAGTGAAAAAA-ATATAAAATAATGGGTCGAAA
1 ACAGTGAAAAAATA-ATAAAATAATGGGTCGAAA
76322421 ACAGTTGAAAAAATAATAAAATAATGGGTCGA
1 ACAG-TGAAAAAATAATAAAATAATGGGTCGA
76322453 GGGCATCTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
33 4 0.13
34 25 0.83
35 1 0.03
ACGTcount: A:0.55, C:0.06, G:0.18, T:0.20
Consensus pattern (33 bp):
ACAGTGAAAAAATAATAAAATAATGGGTCGAAA
Found at i:76322694 original size:14 final size:14
Alignment explanation
Indices: 76322669--76322706 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
76322659 TTGGTGAGAG
76322669 AAGAAAAA-AGAAA
1 AAGAAAAAGAGAAA
*
76322682 AAGAAAAAGAGAAG
1 AAGAAAAAGAGAAA
*
76322696 AAGAAGAAGAG
1 AAGAAAAAGAG
76322707 GGAGGGAGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 8 0.36
14 14 0.64
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGAGAAA
Found at i:76323493 original size:155 final size:154
Alignment explanation
Indices: 76323269--76324376 Score: 1736
Period size: 155 Copynumber: 7.2 Consensus size: 154
76323259 AAAATAATAT
* * * *
76323269 AAAAATAAAATACGAAAAT--AA-AAA-AATAAAAACAAATGGCCAAAACCAGAGTTTTTTTACT
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAG-TTTTTTACT
*
76323330 AAATTAATATTAAAAAAACACTAAAGTAATACATTTGAAACATTATGTACTAAAATAATATAAAA
65 AAATTAATA-TAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAA
*
76323395 ATAAAATAGGAAAATAGTATATTTTA
129 ATAAAATACGAAAATAGTATATTTTA
* *
76323421 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAACAAACGGCTAAAATCAGAGTTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
*
76323486 AATTAATAT-AAAAAATACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAA
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAA
76323550 TAAAATACGAAAATAGTATATTTTA
130 TAAAATACGAAAATAGTATATTTTA
*
76323575 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATTAGAGTTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
* * * *
76323640 AATTAATATAAAAAAACACTAATATAATACATTCGAACCATTATGTACTAAAATAATGTAAAAAA
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAA--T-ATAAA
*
76323705 AATAAAATACGAAAATAATATATTTTA
128 AATAAAATACGAAAATAGTATATTTTA
* *
76323732 AAAAATAAAATCCGAAAATAAAATAAATAATAAAAATAAACGGTCAAAATCAGAGTTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
*
76323797 AATTAATATAAAAAAAACATTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAA
66 AATTAATAT-AAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAA
76323862 TAAAATACGAAAATAGTATATTTTA
130 TAAAATACGAAAATAGTATATTTTA
* *
76323887 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCAAAAATCAGAATTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
* * * *
76323952 AATTAATATAAAAAAAACACTAATATAATACATTCGAACCATTATGTACTAAAATAATGTAAAAA
66 AATTAATAT-AAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAA--TATAAA
76324017 AATAAAATACGAAAATAGTATA-TTTA
128 AATAAAATACGAAAATAGTATATTTTA
*
76324043 AAAAATAAAATCCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
76324108 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
76324173 AAAATACGAAAATAGTATATTTTAA
131 AAAATACGAAAATAGTATATTTT-A
* *
76324198 AAAAATAAAATTCAAAAATAAAATAAATAAT-AAAA-AAATGGCCAAAATCAGAG-TTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
* * *
76324260 AATTAATAT-AAAAAA-ACTAAATTAATACATTCGAACCATTATGTACTAAAATAATATAAAAAA
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT--AAAA
76324323 ATAAAATACGAAAATAGTATA-TTTA
129 ATAAAATACGAAAATAGTATATTTTA
*
76324348 AAAAATAAAATCCGAAAATAAAATAAATA
1 AAAAATAAAATTCGAAAATAAAATAAATA
76324377 CCAAAATATA
Statistics
Matches: 891, Mismatches: 49, Indels: 34
0.91 0.05 0.03
Matches are distributed among these distances:
150 67 0.08
151 9 0.01
152 61 0.07
153 91 0.10
154 110 0.12
155 281 0.32
156 100 0.11
157 128 0.14
158 44 0.05
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (154 bp):
AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
AAAATACGAAAATAGTATATTTTA
Found at i:76323562 original size:25 final size:25
Alignment explanation
Indices: 76323534--76323609 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 25
76323524 ATTATGTACT
76323534 AAAATAATATAAAAAATAAAATACG
1 AAAATAATATAAAAAATAAAATACG
*
76323559 AAAATAGTATATTTTAAAAAATAAAATTCG
1 AAAATA--ATA---TAAAAAATAAAATACG
* *
76323589 AAAATAAAATAAATAATAAAA
1 AAAATAATATAAAAAATAAAA
76323610 ATAAACGGCC
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
25 17 0.40
27 3 0.07
28 2 0.05
30 21 0.49
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.25
Consensus pattern (25 bp):
AAAATAATATAAAAAATAAAATACG
Found at i:76323730 original size:311 final size:308
Alignment explanation
Indices: 76323269--76324376 Score: 1812
Period size: 311 Copynumber: 3.6 Consensus size: 308
76323259 AAAATAATAT
* * * *
76323269 AAAAATAAAATACGAAAAT--AA-AAA-AATAAAAACAAATGGCCAAAACCAGAGTTTTTTTACT
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAG-TTTTTTACT
* * *
76323330 AAATTAATATTAAAAAAACACTAAAGTAATACATTTGAAACATTATGTACTAAAATAA--TATAA
65 AAATTAATA-TAAAAAAACACTAAAGTAATACATTCGAACCATTATGTACTAAAATAATGTAAAA
* * *
76323393 AAATAAAATAGGAAAATAGTATATTTTAAAAAATAAAATTCGAAAATAAAATAAATAATAAAAAC
129 AAATAAAATACGAAAATAGTATA-TTTAAAAAATAAAATCCGAAAATAAAATAAATAATAAAAAT
*
76323458 AAACGGCTAAAATCAGAGTTTTTTACTAAATTAATATAAAAAATACTAAAATAATACATTTGAAA
193 AAACGGCTAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAAACTAAAATAATACATTTGAAA
76323523 CATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTA
258 CATTATGTACTAAAATAATAT-AAAAATAAAATACGAAAATAGTATATTTTA
*
76323575 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATTAGAGTTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
76323640 AATTAATATAAAAAAACACTAATA-TAATACATTCGAACCATTATGTACTAAAATAATGTAAAAA
66 AATTAATATAAAAAAACACTAA-AGTAATACATTCGAACCATTATGTACTAAAATAATGT-AAAA
*
76323704 AAATAAAATACGAAAATAATATATTTTAAAAAATAAAATCCGAAAATAAAATAAATAATAAAAAT
129 AAATAAAATACGAAAATAGTATA-TTTAAAAAATAAAATCCGAAAATAAAATAAATAATAAAAAT
76323769 AAACGG-TCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAAACATTAAAATAATACATTTG
193 AAACGGCT-AAAATCAGAGTTTTTTACTAAATTAATATAAAAAAAAC--TAAAATAATACATTTG
76323833 AAACATTATGTACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTA
255 AAACATTATGTACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTA
* *
76323887 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCAAAAATCAGAATTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
76323952 AATTAATATAAAAAAAACACTAATA-TAATACATTCGAACCATTATGTACTAAAATAATGTAAAA
66 AATTAATAT-AAAAAAACACTAA-AGTAATACATTCGAACCATTATGTACTAAAATAATGTAAAA
76324016 AAATAAAATACGAAAATAGTATATTTAAAAAATAAAATCCGAAAATAAAATAAATAATAAAAATA
129 AAATAAAATACGAAAATAGTATATTTAAAAAATAAAATCCGAAAATAAAATAAATAATAAAAATA
*
76324081 AACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACACTAAAATAATACATTTGAAA
194 AACGGCTAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAA-ACTAAAATAATACATTTGAAA
76324146 CATTATGTACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAA
258 CATTATGTACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTT-A
* *
76324198 AAAAATAAAATTCAAAAATAAAATAAATAAT-AAAA-AAATGGCCAAAATCAGAG-TTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
* *
76324260 AATTAATAT-AAAAAA-ACTAAATTAATACATTCGAACCATTATGTACTAAAATAATATAAAAAA
66 AATTAATATAAAAAAACACTAAAGTAATACATTCGAACCATTATGTACTAAAATAATGTAAAAAA
76324323 ATAAAATACGAAAATAGTATATTTAAAAAATAAAATCCGAAAATAAAATAAATA
131 ATAAAATACGAAAATAGTATATTTAAAAAATAAAATCCGAAAATAAAATAAATA
76324377 CCAAAATATA
Statistics
Matches: 763, Mismatches: 23, Indels: 33
0.93 0.03 0.04
Matches are distributed among these distances:
304 1 0.00
305 99 0.13
306 24 0.03
308 64 0.08
309 37 0.05
310 98 0.13
311 221 0.29
312 129 0.17
313 90 0.12
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (308 bp):
AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
AATTAATATAAAAAAACACTAAAGTAATACATTCGAACCATTATGTACTAAAATAATGTAAAAAA
ATAAAATACGAAAATAGTATATTTAAAAAATAAAATCCGAAAATAAAATAAATAATAAAAATAAA
CGGCTAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAAACTAAAATAATACATTTGAAACAT
TATGTACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTA
Found at i:76323766 original size:32 final size:32
Alignment explanation
Indices: 76323688--76323771 Score: 86
Period size: 30 Copynumber: 2.7 Consensus size: 32
76323678 CATTATGTAC
*
76323688 TAAAATAATGTAA-AAAAAATAAAATACGAAAA
1 TAAAATAA-ATAATAAAAAATAAAATACGAAAA
* ** *
76323720 T--AATATATTTTAAAAAATAAAATCCGAAAA
1 TAAAATAAATAATAAAAAATAAAATACGAAAA
76323750 TAAAATAAATAAT-AAAAATAAA
1 TAAAATAAATAATAAAAAATAAA
76323772 CGGTCAAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
29 1 0.02
30 23 0.56
31 9 0.22
32 8 0.20
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (32 bp):
TAAAATAAATAATAAAAAATAAAATACGAAAA
Found at i:76324233 original size:31 final size:31
Alignment explanation
Indices: 76324156--76324233 Score: 72
Period size: 31 Copynumber: 2.6 Consensus size: 31
76324146 CATTATGTAC
*
76324156 TAAAAT-AAT-ATAAAAATAAAATACGAAAA
1 TAAAATAAATAATAAAAATAAAATACAAAAA
** ** *
76324185 TAGTATATTTTAA-AAAAATAAAATTCAAAAA
1 TAAAATA-AATAATAAAAATAAAATACAAAAA
76324216 TAAAATAAATAATAAAAA
1 TAAAATAAATAATAAAAA
76324234 AATGGCCAAA
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
29 4 0.11
30 3 0.09
31 27 0.77
32 1 0.03
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (31 bp):
TAAAATAAATAATAAAAATAAAATACAAAAA
Found at i:76335181 original size:26 final size:25
Alignment explanation
Indices: 76335152--76335204 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
76335142 TCATAATTCT
76335152 ATATCAAACACTAAACATTGCCCCAA
1 ATATCAAACA-TAAACATTGCCCCAA
** **
76335178 ATATTGATTATAAACATTGCCCCAA
1 ATATCAAACATAAACATTGCCCCAA
76335203 AT
1 AT
76335205 GTTGATTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.43, C:0.25, G:0.06, T:0.26
Consensus pattern (25 bp):
ATATCAAACATAAACATTGCCCCAA
Found at i:76335191 original size:25 final size:25
Alignment explanation
Indices: 76335163--76335214 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
76335153 TATCAAACAC
76335163 TAAACATTGCCCCAAATATTGATTA
1 TAAACATTGCCCCAAATATTGATTA
*
76335188 TAAACATTGCCCCAAATGTTGATTA
1 TAAACATTGCCCCAAATATTGATTA
76335213 TA
1 TA
76335215 TCCGAAAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (25 bp):
TAAACATTGCCCCAAATATTGATTA
Found at i:76343682 original size:28 final size:28
Alignment explanation
Indices: 76343630--76343683 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
76343620 ATTAAGATTC
* * **
76343630 AATTGATGGTACATATTTACCTTTAAAA
1 AATTAATGATACATATTTAAATTTAAAA
76343658 AATTAATGATACATATTTAAATTTAA
1 AATTAATGATACATATTTAAATTTAA
76343684 CTGAAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (28 bp):
AATTAATGATACATATTTAAATTTAAAA
Found at i:76354067 original size:16 final size:15
Alignment explanation
Indices: 76354033--76354072 Score: 64
Period size: 16 Copynumber: 2.7 Consensus size: 15
76354023 TTTTTCGTAT
76354033 AAAAATAAA-AATAA
1 AAAAATAAATAATAA
76354047 AAAAATAAATAATACA
1 AAAAATAAATAATA-A
76354063 AAAAATAAAT
1 AAAAATAAAT
76354073 GAAATCAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 9 0.38
15 4 0.17
16 11 0.46
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAAATAAATAATAA
Found at i:76354531 original size:18 final size:18
Alignment explanation
Indices: 76354508--76354547 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
76354498 GTAAATGGAC
76354508 TATTGGACTTTTATTATT
1 TATTGGACTTTTATTATT
76354526 TATTGGACTTTTATTATT
1 TATTGGACTTTTATTATT
76354544 TATT
1 TATT
76354548 ATTTTTTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.23, C:0.05, G:0.10, T:0.62
Consensus pattern (18 bp):
TATTGGACTTTTATTATT
Found at i:76360593 original size:250 final size:250
Alignment explanation
Indices: 76360152--76360651 Score: 964
Period size: 250 Copynumber: 2.0 Consensus size: 250
76360142 GGAAGGATTA
*
76360152 GCACCCTCGTAACGCCCAAAATTGGTACCTAATTGATTAATTAATGTCTTAATATCGAAAATTGA
1 GCACCCTCGTAACGCCCAAAATTAGTACCTAATTGATTAATTAATGTCTTAATATCGAAAATTGA
76360217 AAAGATTTAAAACAAATTTGGAAATACGATCCCTTTTTATGAATGTTTAGCTAACTTGAAGTAGA
66 AAAGATTTAAAACAAATTTGGAAATACGATCCCTTTTTATGAATGTTTAGCTAACTTGAAGTAGA
76360282 TATTAAGATCCTCTTGTTTCGAAGGAGTAAAATATCACATCCAACACGTAGGACACGACATTTCC
131 TATTAAGATCCTCTTGTTTCGAAGGAGTAAAATATCACATCCAACACGTAGGACACGACATTTCC
76360347 AACCTTCGATGCCCAAAATCATCTCATGATTTCCAAAACTCATGCATTGAAATTT
196 AACCTTCGATGCCCAAAATCATCTCATGATTTCCAAAACTCATGCATTGAAATTT
76360402 GCACCCTCGTAACGCCCAAAATTAGTACCTAATTGATTAATTAATGTCTTAATATCGAAAATTGA
1 GCACCCTCGTAACGCCCAAAATTAGTACCTAATTGATTAATTAATGTCTTAATATCGAAAATTGA
*
76360467 AAAGATTTAAAACAAATTTGGAAATACGATCCCTTTTTATGAATGTTTAGCTAACTTGAAGTGGA
66 AAAGATTTAAAACAAATTTGGAAATACGATCCCTTTTTATGAATGTTTAGCTAACTTGAAGTAGA
* *
76360532 TATTAAGATTCTCTTGTTTTGAAGGAGTAAAATATCACATCCAACACGTAGGACACGACATTTCC
131 TATTAAGATCCTCTTGTTTCGAAGGAGTAAAATATCACATCCAACACGTAGGACACGACATTTCC
76360597 AACCTTCGATGCCCAAAATCATCTCATGATTTCCAAAACTCATGCATTGAAATTT
196 AACCTTCGATGCCCAAAATCATCTCATGATTTCCAAAACTCATGCATTGAAATTT
76360652 TAAAAAGGAT
Statistics
Matches: 246, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
250 246 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (250 bp):
GCACCCTCGTAACGCCCAAAATTAGTACCTAATTGATTAATTAATGTCTTAATATCGAAAATTGA
AAAGATTTAAAACAAATTTGGAAATACGATCCCTTTTTATGAATGTTTAGCTAACTTGAAGTAGA
TATTAAGATCCTCTTGTTTCGAAGGAGTAAAATATCACATCCAACACGTAGGACACGACATTTCC
AACCTTCGATGCCCAAAATCATCTCATGATTTCCAAAACTCATGCATTGAAATTT
Found at i:76361227 original size:19 final size:18
Alignment explanation
Indices: 76361205--76361240 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
76361195 TAGAATAGCT
76361205 TAAAATAATAATTCAAAAA
1 TAAAATAA-AATTCAAAAA
*
76361224 TAAAATAAAATTTAAAA
1 TAAAATAAAATTCAAAA
76361241 CTACATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAAATAAAATTCAAAAA
Found at i:76361732 original size:3 final size:3
Alignment explanation
Indices: 76361726--76361762 Score: 65
Period size: 3 Copynumber: 12.0 Consensus size: 3
76361716 TAAAGTAGAA
76361726 AAT AAT AAT AAT AAT AAAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT
76361763 GAAAATGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:76361746 original size:16 final size:16
Alignment explanation
Indices: 76361725--76361762 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
76361715 ATAAAGTAGA
76361725 AAATAATAATAATAAT
1 AAATAATAATAATAAT
76361741 AAATAATAATAATAAT
1 AAATAATAATAATAAT
76361757 -AATAAT
1 AAATAAT
76361763 GAAAATGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AAATAATAATAATAAT
Found at i:76363904 original size:31 final size:31
Alignment explanation
Indices: 76363868--76363927 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
76363858 ACTCGAATTT
76363868 TTTTCCAT-CTTGTACCTCTTTTTCTTTTTTA
1 TTTTCCATCCTTGTACC-CTTTTTCTTTTTTA
* * *
76363899 TTTTCCCTCCTTTTTCCCTTTTTCTTTTT
1 TTTTCCATCCTTGTACCCTTTTTCTTTTT
76363928 CCTTTTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 19 0.76
32 6 0.24
ACGTcount: A:0.05, C:0.27, G:0.02, T:0.67
Consensus pattern (31 bp):
TTTTCCATCCTTGTACCCTTTTTCTTTTTTA
Found at i:76365239 original size:21 final size:20
Alignment explanation
Indices: 76365215--76365261 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
76365205 AAAAATAATT
*
76365215 AAATAATTCATAAAGTTAAAA
1 AAATAACTC-TAAAGTTAAAA
* *
76365236 AAATAACTCTTAATTTAAAA
1 AAATAACTCTAAAGTTAAAA
76365256 AAATAA
1 AAATAA
76365262 ACGTAATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATAACTCTAAAGTTAAAA
Found at i:76365268 original size:19 final size:20
Alignment explanation
Indices: 76365230--76365269 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
76365220 ATTCATAAAG
* *
76365230 TTAAAAAAATAACTCTTAAT
1 TTAAAAAAATAACACGTAAT
76365250 TTAAAAAAATAA-ACGTAAT
1 TTAAAAAAATAACACGTAAT
76365269 T
1 T
76365270 ATCTAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (20 bp):
TTAAAAAAATAACACGTAAT
Found at i:76366876 original size:12 final size:12
Alignment explanation
Indices: 76366859--76366891 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
76366849 CGGCCTGCCC
76366859 ATATTAATTTTT
1 ATATTAATTTTT
76366871 ATATT-ATTTTT
1 ATATTAATTTTT
76366882 ATA-TAATTTT
1 ATATTAATTTT
76366892 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:76367059 original size:30 final size:30
Alignment explanation
Indices: 76367016--76367073 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
76367006 TTTAACAAGT
*
76367016 AAATGCCTCTAAAATAATAACAAAATTAGC
1 AAATGCCTCTAAAATAATAAAAAAATTAGC
* *
76367046 AAATGTCTTTAAAATAATAAAAAAATTA
1 AAATGCCTCTAAAATAATAAAAAAATTA
76367074 ACAATAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.28
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAAAAAAATTAGC
Found at i:76368265 original size:4 final size:4
Alignment explanation
Indices: 76368256--76368291 Score: 63
Period size: 4 Copynumber: 8.8 Consensus size: 4
76368246 TTTTTAAAAT
76368256 TTTA TTTA TTTA TTTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTT
76368292 TCTTTCTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 27 0.87
5 4 0.13
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:76368272 original size:13 final size:13
Alignment explanation
Indices: 76368254--76368291 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
76368244 TTTTTTTAAA
76368254 ATTTTATTTATTT
1 ATTTTATTTATTT
76368267 ATTTTATTTATTT
1 ATTTTATTTATTT
76368280 A-TTTATTTATTT
1 ATTTTATTTATTT
76368292 TCTTTCTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTTTATTTATTT
Found at i:76368437 original size:5 final size:6
Alignment explanation
Indices: 76368420--76368445 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
76368410 CATGGTTTCT
76368420 CTCCCC CTCCCC CTCCCC CTCCCC CT
1 CTCCCC CTCCCC CTCCCC CTCCCC CT
76368446 TCTCTCTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (6 bp):
CTCCCC
Found at i:76369724 original size:3 final size:3
Alignment explanation
Indices: 76369716--76369747 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
76369706 TTCTTTTCGT
76369716 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
76369748 TTGCATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:76376200 original size:10 final size:10
Alignment explanation
Indices: 76376187--76376211 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
76376177 TAAAATACAA
76376187 AAAAAAAAAG
1 AAAAAAAAAG
76376197 AAAAAAAAAG
1 AAAAAAAAAG
76376207 AAAAA
1 AAAAA
76376212 GAGAACCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:76386914 original size:22 final size:22
Alignment explanation
Indices: 76386889--76386933 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
76386879 TTAATAAAAA
76386889 AAAACATCTACAAAATATTCCT
1 AAAACATCTACAAAATATTCCT
* * *
76386911 AAAATATTTACAGAATATTCCT
1 AAAACATCTACAAAATATTCCT
76386933 A
1 A
76386934 CACTACATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAACATCTACAAAATATTCCT
Found at i:76393035 original size:13 final size:13
Alignment explanation
Indices: 76393017--76393042 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76393007 TGTAGCACCT
76393017 GCCCTTCTTGAAC
1 GCCCTTCTTGAAC
76393030 GCCCTTCTTGAAC
1 GCCCTTCTTGAAC
76393043 CTTTTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.15, T:0.31
Consensus pattern (13 bp):
GCCCTTCTTGAAC
Found at i:76406422 original size:10 final size:10
Alignment explanation
Indices: 76406409--76406435 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
76406399 TAAAAAAAAT
76406409 AAATATTGTA
1 AAATATTGTA
76406419 AAATATTGTA
1 AAATATTGTA
76406429 AAATATT
1 AAATATT
76406436 AAAAATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (10 bp):
AAATATTGTA
Found at i:76416689 original size:27 final size:27
Alignment explanation
Indices: 76416659--76416712 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
76416649 CAAAAAAGTT
76416659 TTTTAAAAA-ATTAAAAA-ATTCATAAAA
1 TTTTAAAAAGA-TAAAAATATTC-TAAAA
76416686 TTTTAAAAAGATAAAAATATTCTAAAA
1 TTTTAAAAAGATAAAAATATTCTAAAA
76416713 AATTAGACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (27 bp):
TTTTAAAAAGATAAAAATATTCTAAAA
Found at i:76419278 original size:22 final size:22
Alignment explanation
Indices: 76419253--76419296 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
76419243 GTCAATCTTA
*
76419253 AGATATAATCTCAGAAATCTAT
1 AGATAGAATCTCAGAAATCTAT
76419275 AGATAGAATCTCAGAAATCTAT
1 AGATAGAATCTCAGAAATCTAT
76419297 CTTCTCAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (22 bp):
AGATAGAATCTCAGAAATCTAT
Found at i:76426089 original size:7 final size:7
Alignment explanation
Indices: 76426073--76426102 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
76426063 GATTGGTTTG
76426073 CTCATCT
1 CTCATCT
*
76426080 CTCGTCT
1 CTCATCT
76426087 CTCATCT
1 CTCATCT
76426094 CTCATCT
1 CTCATCT
76426101 CT
1 CT
76426103 TTCTCTCTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.10, C:0.43, G:0.03, T:0.43
Consensus pattern (7 bp):
CTCATCT
Found at i:76426133 original size:8 final size:8
Alignment explanation
Indices: 76426116--76426154 Score: 71
Period size: 8 Copynumber: 5.0 Consensus size: 8
76426106 TCTCTCGAAA
76426116 TCTCTT-T
1 TCTCTTCT
76426123 TCTCTTCT
1 TCTCTTCT
76426131 TCTCTTCT
1 TCTCTTCT
76426139 TCTCTTCT
1 TCTCTTCT
76426147 TCTCTTCT
1 TCTCTTCT
76426155 CTGGTAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 6 0.19
8 25 0.81
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (8 bp):
TCTCTTCT
Found at i:76430447 original size:85 final size:85
Alignment explanation
Indices: 76430348--76430517 Score: 331
Period size: 85 Copynumber: 2.0 Consensus size: 85
76430338 ATTTTAGCAG
*
76430348 AGCAAAAATATATACTAATAAACAACAAACTATTTACTTCTCTTTCTAATAAATATTCTAATGGT
1 AGCAAAAATATATACTAATAAACAACAAACTATTCACTTCTCTTTCTAATAAATATTCTAATGGT
76430413 TGACGGTAAACTGTAGTTCA
66 TGACGGTAAACTGTAGTTCA
76430433 AGCAAAAATATATACTAATAAACAACAAACTATTCACTTCTCTTTCTAATAAATATTCTAATGGT
1 AGCAAAAATATATACTAATAAACAACAAACTATTCACTTCTCTTTCTAATAAATATTCTAATGGT
76430498 TGACGGTAAACTGTAGTTCA
66 TGACGGTAAACTGTAGTTCA
76430518 TAATATCTTG
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (85 bp):
AGCAAAAATATATACTAATAAACAACAAACTATTCACTTCTCTTTCTAATAAATATTCTAATGGT
TGACGGTAAACTGTAGTTCA
Found at i:76433163 original size:16 final size:16
Alignment explanation
Indices: 76433142--76433175 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
76433132 ATTAACCTTA
76433142 TATATTTTAATTAAAT
1 TATATTTTAATTAAAT
*
76433158 TATATTTTAATTGAAT
1 TATATTTTAATTAAAT
76433174 TA
1 TA
76433176 AAGAAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TATATTTTAATTAAAT
Found at i:76434479 original size:27 final size:27
Alignment explanation
Indices: 76434449--76434500 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
76434439 TAAATTTGTT
76434449 TCACTTTATATCAAACAAAATCACATA
1 TCACTTTATATCAAACAAAATCACATA
76434476 TCACTTTATATCAAACAAAATCACA
1 TCACTTTATATCAAACAAAATCACA
76434501 AACTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (27 bp):
TCACTTTATATCAAACAAAATCACATA
Found at i:76436409 original size:18 final size:17
Alignment explanation
Indices: 76436377--76436425 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 17
76436367 AAATATATAG
76436377 ATTTTAAAATTTTTATAAAT
1 ATTTTAAAA--TTTA-AAAT
76436397 ATTTTAAAATTTAAAAT
1 ATTTTAAAATTTAAAAT
*
76436414 TTATTTAAAATT
1 AT-TTTAAAATT
76436426 ATTTTATGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 5 0.19
18 13 0.48
20 9 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTTAAAATTTAAAAT
Found at i:76436409 original size:27 final size:26
Alignment explanation
Indices: 76436354--76436424 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
76436344 TTAGAATTTG
* *
76436354 TTAAAATTTTTAAAAATATATAGATT
1 TTAAAATTTTTAAAAATATATAAAAT
* *
76436380 TTAAAATTTTTATAAATATTTTAAAAT
1 TTAAAATTTTTAAAAATA-TATAAAAT
*
76436407 TTAAAATTTATTTAAAAT
1 TTAAAATTT-TTAAAAAT
76436425 TATTTTATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
26 17 0.46
27 14 0.38
28 6 0.16
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (26 bp):
TTAAAATTTTTAAAAATATATAAAAT
Found at i:76437070 original size:1 final size:1
Alignment explanation
Indices: 76437064--76437089 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
76437054 AACTGTAAAG
76437064 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
76437090 ATAGATTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:76442027 original size:12 final size:12
Alignment explanation
Indices: 76442010--76442035 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76442000 AATAATTACT
76442010 TGGTGTTTTTGG
1 TGGTGTTTTTGG
76442022 TGGTGTTTTTGG
1 TGGTGTTTTTGG
76442034 TG
1 TG
76442036 AGTAAAGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.42, T:0.58
Consensus pattern (12 bp):
TGGTGTTTTTGG
Found at i:76446059 original size:46 final size:46
Alignment explanation
Indices: 76445992--76446252 Score: 398
Period size: 46 Copynumber: 5.7 Consensus size: 46
76445982 GGCAACCTGA
76445992 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
76446038 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAT-AAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
76446083 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
76446129 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
76446175 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
76446221 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
76446253 TCATGTCAAA
Statistics
Matches: 201, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 45 0.22
46 156 0.78
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:76446147 original size:91 final size:92
Alignment explanation
Indices: 76445992--76446252 Score: 400
Period size: 91 Copynumber: 2.8 Consensus size: 92
76445982 GGCAACCTGA
*
76445992 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAA
76446057 AGATACCATGGCAACCTGATAT-AAAT
66 AGATACCATGGCAACCTGATATGAAAT
76446083 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAA
*
76446148 AGATACCATGGCAACGTGATATGAAAT
66 AGATACCATGGCAACCTGATATGAAAT
*** * * * *
76446175 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATGTGTAAGACCATGGTTGA
* *
76446239 AAGACACTATGGCA
65 AAGATACCATGGCA
76446253 TCATGTCAAA
Statistics
Matches: 157, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
91 86 0.55
92 71 0.45
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.22
Consensus pattern (92 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAA
AGATACCATGGCAACCTGATATGAAAT
Found at i:76446188 original size:137 final size:129
Alignment explanation
Indices: 76445942--76446252 Score: 424
Period size: 137 Copynumber: 2.3 Consensus size: 129
76445932 AGTGTGCTCT
76445942 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATAT-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
***
76446007 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
65 TGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
76446072 CTGATATAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 CTGATATAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG--A-GTGTAAGA
* *
76446137 CCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGATACCA
58 CCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCA
76446202 TGGCAAC
123 TGGCAAC
* * * * * * *
76446209 ATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATA-TAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
76446253 TCATGTCAAA
Statistics
Matches: 160, Mismatches: 12, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
129 39 0.24
130 7 0.04
134 2 0.01
136 1 0.01
137 79 0.49
138 32 0.20
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.22
Consensus pattern (129 bp):
CTGATATAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGTT
GAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:76451394 original size:46 final size:46
Alignment explanation
Indices: 76451327--76451588 Score: 407
Period size: 46 Copynumber: 5.7 Consensus size: 46
76451317 GGCAACCCGA
76451327 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
76451373 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
76451419 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
76451465 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
76451511 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
76451557 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
76451589 TCATGTCAAA
Statistics
Matches: 202, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 202 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:76451519 original size:138 final size:130
Alignment explanation
Indices: 76451277--76451588 Score: 426
Period size: 138 Copynumber: 2.3 Consensus size: 130
76451267 AGTGTGCTCT
*
76451277 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCCGAGTGTAAGACCATGGT
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCCGAGTGTAAGACCATGGT
***
76451342 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
*
76451407 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----CG--A-GTGTAAG
* *
76451472 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGATACC
58 ACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACC
76451537 ATGGCAAC
123 ATGGCAAC
* * * * * * *
76451545 ATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
76451589 TCATGTCAAA
Statistics
Matches: 160, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
130 46 0.29
135 1 0.01
137 1 0.01
138 112 0.70
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (130 bp):
CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCCGAGTGTAAGACCATGGT
TGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:76458755 original size:5 final size:5
Alignment explanation
Indices: 76458745--76458772 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
76458735 CAATTTGTAA
76458745 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
76458773 GAACACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:76472596 original size:20 final size:21
Alignment explanation
Indices: 76472554--76472596 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
76472544 TTGAGGGTGG
**
76472554 ATATTTTTAATTTAATTTTAA
1 ATATTTTTAATTTAATTAAAA
76472575 ATATTTTT-ATTTAATTAAAA
1 ATATTTTTAATTTAATTAAAA
76472595 AT
1 AT
76472597 GTTACATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
ATATTTTTAATTTAATTAAAA
Found at i:76474072 original size:58 final size:58
Alignment explanation
Indices: 76474003--76474153 Score: 275
Period size: 58 Copynumber: 2.6 Consensus size: 58
76473993 AAGCACCATT
*
76474003 CAGCTGCTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAGTAC
1 CAGCTGTTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAGTAC
76474061 CAGCTGTTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAGTAC
1 CAGCTGTTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAGTAC
* *
76474119 CAGCTGTTGTTGTGTTGTTGACTGACTGCTTAACT
1 CAGCTGTTGTAGTATTGTTGACTGACTGCTTAACT
76474154 CTGTTAAATT
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 90 1.00
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.40
Consensus pattern (58 bp):
CAGCTGTTGTAGTATTGTTGACTGACTGCTTAACTTATCCTCTTTAACTTCCAAGTAC
Found at i:76477028 original size:30 final size:30
Alignment explanation
Indices: 76476994--76477091 Score: 90
Period size: 30 Copynumber: 3.3 Consensus size: 30
76476984 AGCTCACTCC
76476994 TAGCTCATATTCAGCTCACGAGCTAAACCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
** * * * * *
76477024 TAGCTCAGCTTCAGCTTAGGAGTTTAATCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
* * *
76477054 CAGCTCA-ACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
76477084 TAGCTCAT
1 TAGCTCAT
76477092 TTTAGTTTAA
Statistics
Matches: 50, Mismatches: 16, Indels: 3
0.72 0.23 0.04
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (30 bp):
TAGCTCATATTCAGCTCACGAGCTAAACCT
Found at i:76482553 original size:25 final size:28
Alignment explanation
Indices: 76482503--76482554 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 28
76482493 CAATATTTTT
*
76482503 GCATGAAAATTGATATGATAGGAAAATC
1 GCATGAAAATTGATATGATAGAAAAATC
76482531 GCATGAAAA-T-AT-TGATAGAAAAAT
1 GCATGAAAATTGATATGATAGAAAAAT
76482555 TTTACCGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 11 0.48
26 2 0.09
27 1 0.04
28 9 0.39
ACGTcount: A:0.50, C:0.06, G:0.19, T:0.25
Consensus pattern (28 bp):
GCATGAAAATTGATATGATAGAAAAATC
Found at i:76489282 original size:48 final size:48
Alignment explanation
Indices: 76489205--76489479 Score: 297
Period size: 48 Copynumber: 5.8 Consensus size: 48
76489195 ACAGTGCTAA
** *
76489205 ATGTGCCTGTGTAAGACCATGTCCAGGACATGGCATAGACGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
* *
76489253 ATGTGCCTGTATAAGACCATGTTTGGGACATGGCATCGACGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
* * * *
76489301 ATGTTCCTGTGTAAGACCATGTCCGGGACGT-GCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
** *
76489348 ATGTG-CTAGTGTAAGACCATGTCTAAGACATGGCATCGGCGATGATAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
* * * * **
76489396 GTGTACCAGTGTAAGACCATGTCTGGGACATGACATCGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
* ** *
76489444 GTG-GATTCATGTAAGACCATGTC-GAGGACATGGCAT
1 ATGTGCCT-GTGTAAGACCATGTCTG-GGACATGGCAT
76489480 TAGTACTTTA
Statistics
Matches: 193, Mismatches: 29, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
46 2 0.01
47 39 0.20
48 151 0.78
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
Found at i:76489378 original size:95 final size:96
Alignment explanation
Indices: 76489205--76489479 Score: 324
Period size: 95 Copynumber: 2.9 Consensus size: 96
76489195 ACAGTGCTAA
* * * * * *
76489205 ATGTGCCTGTGTAAGACCATGTCCAGGACATGGCATAGACGATGATATATGTGCCT-GTATAAGA
1 ATGTACCTGTGTAAGACCATGTCCGGGACAT-GCATCGGCGATGATATATGTGACTAGTGTAAGA
* *
76489269 CCATGTTTGGGACATGGCATCGACGATGATAT
65 CCATGTCTAGGACATGGCATCGACGATGATAT
* *
76489301 ATGTTCCTGTGTAAGACCATGTCCGGGACGTGCATCGGCGATGATATATGTG-CTAGTGTAAGAC
1 ATGTACCTGTGTAAGACCATGTCCGGGACATGCATCGGCGATGATATATGTGACTAGTGTAAGAC
* *
76489365 CATGTCTAAGACATGGCATCGGCGATGATAT
66 CATGTCTAGGACATGGCATCGACGATGATAT
* * * * * *
76489396 GTGTACCAGTGTAAGACCATGTCTGGGACATGACATCGGTGATGATATGTG-GATTCA-TGTAAG
1 ATGTACCTGTGTAAGACCATGTCCGGGACATG-CATCGGCGATGATATATGTGACT-AGTGTAAG
*
76489459 ACCATGTCGAGGACATGGCAT
64 ACCATGTCTAGGACATGGCAT
76489480 TAGTACTTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
94 2 0.01
95 82 0.53
96 70 0.45
97 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (96 bp):
ATGTACCTGTGTAAGACCATGTCCGGGACATGCATCGGCGATGATATATGTGACTAGTGTAAGAC
CATGTCTAGGACATGGCATCGACGATGATAT
Found at i:76489463 original size:143 final size:143
Alignment explanation
Indices: 76489205--76489466 Score: 350
Period size: 143 Copynumber: 1.8 Consensus size: 143
76489195 ACAGTGCTAA
* * *
76489205 ATGTGCCTGTGTAAGACCATGTCCAGGACATGGCATAGACGATGATATATGTGCCTGTATAAGAC
1 ATGTGCCTGTGTAAGACCATGTCCAAGACATGGCATAGACGATGATATATGTACCAGTATAAGAC
* * *
76489270 CATGTTTGGGACATGGCATCGACGATGATATATGTTCCTGTGTAAGACCATGTCCGGGACGTGCA
66 CATGTCTGGGACATGACATCGACGATGATATATGTTCCTATGTAAGACCATGTCCGGGACGTGCA
76489335 TCGGCGATGATAT
131 TCGGCGATGATAT
* * * * *
76489348 ATGTG-CTAGTGTAAGACCATGTCTAAGACATGGCATCGGCGATGATATGTGTACCAGTGTAAGA
1 ATGTGCCT-GTGTAAGACCATGTCCAAGACATGGCATAGACGATGATATATGTACCAGTATAAGA
** *
76489412 CCATGTCTGGGACATGACATCGGTGATGATATGTGGATT-C-ATGTAAGACCATGTC
65 CCATGTCTGGGACATGACATCGACGATGATATAT-G-TTCCTATGTAAGACCATGTC
76489467 GAGGACATGG
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
142 2 0.02
143 96 0.94
144 2 0.02
145 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (143 bp):
ATGTGCCTGTGTAAGACCATGTCCAAGACATGGCATAGACGATGATATATGTACCAGTATAAGAC
CATGTCTGGGACATGACATCGACGATGATATATGTTCCTATGTAAGACCATGTCCGGGACGTGCA
TCGGCGATGATAT
Found at i:76491142 original size:14 final size:14
Alignment explanation
Indices: 76491123--76491151 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
76491113 TGATGCAAAG
76491123 ATTCTTTTTGGTCT
1 ATTCTTTTTGGTCT
76491137 ATTCTTTTTGGTCT
1 ATTCTTTTTGGTCT
76491151 A
1 A
76491152 AACCATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.14, G:0.14, T:0.62
Consensus pattern (14 bp):
ATTCTTTTTGGTCT
Found at i:76494134 original size:23 final size:22
Alignment explanation
Indices: 76494101--76494143 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
76494091 GGTTCTTTTA
76494101 TTCTTATATTTATTAATTATTT
1 TTCTTATATTTATTAATTATTT
*
76494123 TTCTTAATATTTATTTATTAT
1 TTCTT-ATATTTATTAATTAT
76494144 ATCTATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (22 bp):
TTCTTATATTTATTAATTATTT
Found at i:76494153 original size:40 final size:40
Alignment explanation
Indices: 76494098--76494193 Score: 99
Period size: 40 Copynumber: 2.4 Consensus size: 40
76494088 TTTGGTTCTT
* * * *
76494098 TTATTCTTA-TATTTATTAATTATTTTTCTTA-ATATTTA
1 TTATTATTATTATTTATTAATCATTTTTCTCACACATTTA
* *
76494136 TTTATTA-TATCTATTTATTTATCCTTTTTCTCACACATTTA
1 -TTATTATTAT-TATTTATTAATCATTTTTCTCACACATTTA
76494177 TTATTATTATTATTTAT
1 TTATTATTATTATTTAT
76494194 CCTTTTGTTC
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
38 2 0.04
39 5 0.11
40 31 0.66
41 9 0.19
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (40 bp):
TTATTATTATTATTTATTAATCATTTTTCTCACACATTTA
Found at i:76498472 original size:27 final size:27
Alignment explanation
Indices: 76498440--76498493 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
76498430 CCTATGCTAC
76498440 CTGTAAATCAGACCTCTTTCTTGCTTT
1 CTGTAAATCAGACCTCTTTCTTGCTTT
76498467 CTGTAAATCAGACCTCTTTCTTGCTTT
1 CTGTAAATCAGACCTCTTTCTTGCTTT
76498494 GCTTTTCTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.26, G:0.11, T:0.44
Consensus pattern (27 bp):
CTGTAAATCAGACCTCTTTCTTGCTTT
Found at i:76506708 original size:4 final size:5
Alignment explanation
Indices: 76506683--76506715 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
76506673 CAATTTGTGA
76506683 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAA
76506716 GAACACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
5 18 0.69
6 4 0.15
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:76509799 original size:107 final size:104
Alignment explanation
Indices: 76509667--76509868 Score: 298
Period size: 107 Copynumber: 1.9 Consensus size: 104
76509657 TGCCATTGTT
* * * *
76509667 GATTATGAAAAACTAGATTGTAAAGTTTAATTTTTAGTTTTTTACATAAGAACTAAAATGTATAA
1 GATTATGAAAAACTAGATTCTAAAGTTTAATTGTTAATTTTGTACATAAGAACTAAAATGTATAA
*
76509732 ATGATGAAACTT-CGGTGAAATTTTAGTAATCTAAGCTTA
66 ATGATGAAA-TTGAGGTGAAATTTTAGTAATCTAAGCTTA
*
76509771 GATTATGAAAAAGGACTAGATTCTAAAGTTTAATTGTTAATTTTGTACTTAAGAACTAAAATGTA
1 GATTATG-AAAA--ACTAGATTCTAAAGTTTAATTGTTAATTTTGTACATAAGAACTAAAATGTA
*
76509836 TAAATGGTGAAATTGAGGTGAAATTTTAGTAAT
63 TAAATGATGAAATTGAGGTGAAATTTTAGTAAT
76509869 AATAGATAGT
Statistics
Matches: 87, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
104 7 0.08
105 4 0.05
106 2 0.02
107 74 0.85
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.38
Consensus pattern (104 bp):
GATTATGAAAAACTAGATTCTAAAGTTTAATTGTTAATTTTGTACATAAGAACTAAAATGTATAA
ATGATGAAATTGAGGTGAAATTTTAGTAATCTAAGCTTA
Found at i:76521054 original size:32 final size:32
Alignment explanation
Indices: 76521018--76521078 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
76521008 CGCCGCATAC
76521018 CCCTCAGCCTTGGCCACCACGCCCCACGCATG
1 CCCTCAGCCTTGGCCACCACGCCCCACGCATG
* *
76521050 CCCTCAGCCTTGGTCACCACGCTCCACGC
1 CCCTCAGCCTTGGCCACCACGCCCCACGC
76521079 GTCTGACACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.15, C:0.52, G:0.18, T:0.15
Consensus pattern (32 bp):
CCCTCAGCCTTGGCCACCACGCCCCACGCATG
Found at i:76546282 original size:16 final size:17
Alignment explanation
Indices: 76546263--76546295 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76546253 AATTTTATAT
76546263 TTTAAATA-TATTTTTG
1 TTTAAATATTATTTTTG
*
76546279 TTTATATATTATTTTTG
1 TTTAAATATTATTTTTG
76546296 AATATTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTAAATATTATTTTTG
Found at i:76546309 original size:18 final size:18
Alignment explanation
Indices: 76546268--76546330 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
76546258 TATATTTTAA
** *
76546268 ATATATTTTTGTTTATAT
1 ATATATTTTTGAATATTT
76546286 AT-TATTTTTGAATATTT
1 ATATATTTTTGAATATTT
*
76546303 ATATATTTTT-AAAATTTT
1 ATATATTTTTGAATA-TTT
*
76546321 ATGTATTTTT
1 ATATATTTTT
76546331 TATTTTGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
17 17 0.45
18 21 0.55
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (18 bp):
ATATATTTTTGAATATTT
Found at i:76556798 original size:2 final size:2
Alignment explanation
Indices: 76556791--76556835 Score: 58
Period size: 2 Copynumber: 23.0 Consensus size: 2
76556781 AGTACGTAGT
*
76556791 TA TA TA TA TA TA TA TA TA TA TA TA TGA TA T- TA AA TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA
76556832 TA TA
1 TA TA
76556836 AATTATAACT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
1 2 0.05
2 34 0.89
3 2 0.05
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
TA
Found at i:76561145 original size:36 final size:36
Alignment explanation
Indices: 76561105--76561178 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
76561095 AGTTCGGAGT
76561105 CATTTTCCCCTTTTGAATTGCAAGTTTACTGCTGCA
1 CATTTTCCCCTTTTGAATTGCAAGTTTACTGCTGCA
76561141 CATTTTCCCCTTTTGAATTGCAAGTTTACTGCTGCA
1 CATTTTCCCCTTTTGAATTGCAAGTTTACTGCTGCA
76561177 CA
1 CA
76561179 GAAAGGAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.41
Consensus pattern (36 bp):
CATTTTCCCCTTTTGAATTGCAAGTTTACTGCTGCA
Found at i:76567688 original size:15 final size:14
Alignment explanation
Indices: 76567670--76567708 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
76567660 AATTCAGTAT
*
76567670 TTAAATTTTCAATAC
1 TTAAATTTT-AAAAC
76567685 TTAATATTTTAAAAC
1 TTAA-ATTTTAAAAC
76567700 TTAAATTTT
1 TTAAATTTT
76567709 TTTTAGTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 12 0.55
16 5 0.23
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (14 bp):
TTAAATTTTAAAAC
Found at i:76576551 original size:39 final size:39
Alignment explanation
Indices: 76576491--76576577 Score: 113
Period size: 39 Copynumber: 2.2 Consensus size: 39
76576481 ATTAGTGGCA
*
76576491 TTTTTACAAAAGCGCCGCTATAGATCGACCATTAACGGTG
1 TTTTTA-AAAAGCGCCGCTATAGATCGACCATTAACGGCG
* * *
76576531 CTTTTTAAAAA-CGCTGCTATAGATCGAGCATTAGCGGCG
1 -TTTTTAAAAAGCGCCGCTATAGATCGACCATTAACGGCG
76576570 TTTTTAAA
1 TTTTTAAA
76576578 GAACTAATGG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
38 8 0.19
39 24 0.57
40 4 0.10
41 6 0.14
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (39 bp):
TTTTTAAAAAGCGCCGCTATAGATCGACCATTAACGGCG
Found at i:76576736 original size:111 final size:114
Alignment explanation
Indices: 76576596--76576841 Score: 268
Period size: 115 Copynumber: 2.2 Consensus size: 114
76576586 GGTTGATCTA
* * * * *
76576596 TAGCGGCGCTTTTATAAAAACGTCACAAAATAATTCATCAACA-CCCGTC-TTTTTT-TT-GCCT
1 TAGCGGCGCTTTTTTAGAAACGCCACAAAATAATTCATCAACATCACATCATTTTTTGTTAGCCT
*** * *
76576657 TAGAGGCATTTAGCGGTGCTTTTT-AACCAACACCGCTATAGGTCGAGCAT
66 TAGAGGCA-TTAGCGACACTTTTTGAA-AAACACCGCTATAGATCGAGCAT
* * * *
76576707 TAGCGGCGCTTTTTTAGAAGCGCCGCAAAATATTTCATCAACATGACATCATTTTTTGTTGAGCC
1 TAGCGGCGCTTTTTTAGAAACGCCACAAAATAATTCATCAACATCACATCATTTTTTGTT-AGCC
* * *
76576772 TTAGTGGCATTAGCGACACTTTTTGAAAAACGCCGCTATAGATCGAGCTT
65 TTAGAGGCATTAGCGACACTTTTTGAAAAACACCGCTATAGATCGAGCAT
*
76576822 TAGCGGCACTTTTTTAGAAA
1 TAGCGGCGCTTTTTTAGAAA
76576842 ACGCTGCAAA
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
111 37 0.34
112 3 0.03
113 6 0.05
114 2 0.02
115 49 0.45
116 13 0.12
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (114 bp):
TAGCGGCGCTTTTTTAGAAACGCCACAAAATAATTCATCAACATCACATCATTTTTTGTTAGCCT
TAGAGGCATTAGCGACACTTTTTGAAAAACACCGCTATAGATCGAGCAT
Found at i:76577000 original size:27 final size:27
Alignment explanation
Indices: 76576944--76577001 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
76576934 ATTCTTCAAA
*
76576944 AAAATAATAACACATAGAAAAAAATTT
1 AAAATAATAACACATAGAAAAAAATGT
*
76576971 AAAATAA-AA-ACATATAAAAATATATGT
1 AAAATAATAACACATAGAAAAA-A-ATGT
76576998 AAAA
1 AAAA
76577002 AATGAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 10 0.37
26 3 0.11
27 14 0.52
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.22
Consensus pattern (27 bp):
AAAATAATAACACATAGAAAAAAATGT
Found at i:76577166 original size:7 final size:7
Alignment explanation
Indices: 76577154--76577186 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
76577144 TATCATTATA
76577154 GTTTAAG
1 GTTTAAG
76577161 GTTTAAG
1 GTTTAAG
76577168 GTTTAAG
1 GTTTAAG
*
76577175 GTTTATG
1 GTTTAAG
76577182 GTTTA
1 GTTTA
76577187 GCCGGGTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.48
Consensus pattern (7 bp):
GTTTAAG
Found at i:76577248 original size:15 final size:15
Alignment explanation
Indices: 76577224--76577259 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
76577214 ATATTTTAAG
*
76577224 GTTTATGGATTATGA
1 GTTTAGGGATTATGA
*
76577239 GTTTAGGGATTATGG
1 GTTTAGGGATTATGA
76577254 GTTTAG
1 GTTTAG
76577260 AATTTAAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (15 bp):
GTTTAGGGATTATGA
Found at i:76577267 original size:44 final size:44
Alignment explanation
Indices: 76577206--76577330 Score: 126
Period size: 44 Copynumber: 2.9 Consensus size: 44
76577196 GTGGTTTATG
* * *
76577206 ATGAGTTAATATTTTAAGGTTTATGGATTATGAGTTTAGGGATT
1 ATGAGTTAAGAATTTAAGGTTTATGGATTATGAGATTAGGGATT
* * * * * * * *
76577250 ATGGGTTTAGAATTTAAGGTTTAAGGTTTAAGGGATTATGGTTT
1 ATGAGTTAAGAATTTAAGGTTTATGGATTATGAGATTAGGGATT
* *
76577294 ATGAGTTAATATTTTAAGGTTTATGGATTATG-GATTA
1 ATGAGTTAAGAATTTAAGGTTTATGGATTATGAGATTA
76577331 TGGTTCAAAG
Statistics
Matches: 63, Mismatches: 18, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
43 5 0.08
44 58 0.92
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.45
Consensus pattern (44 bp):
ATGAGTTAAGAATTTAAGGTTTATGGATTATGAGATTAGGGATT
Found at i:76577314 original size:22 final size:21
Alignment explanation
Indices: 76577210--76577319 Score: 60
Period size: 22 Copynumber: 5.0 Consensus size: 21
76577200 TTTATGATGA
*
76577210 GTTAATATTTTAAGGTTTATG
1 GTTAATAGTTTAAGGTTTATG
* *
76577231 GATT-ATGAGTTTAGGGATTATGG
1 G-TTAAT-AGTTTAAGGTTTAT-G
* * * *
76577254 GTTTAGAATTTAAGGTTTAAG
1 GTTAATAGTTTAAGGTTTATG
** * *
76577275 GTTTAAGGGATTATGGTTTATG
1 G-TTAATAGTTTAAGGTTTATG
*
76577297 AGTTAATATTTTAAGGTTTATG
1 -GTTAATAGTTTAAGGTTTATG
76577319 G
1 G
76577320 ATTATGGATT
Statistics
Matches: 64, Mismatches: 19, Indels: 12
0.67 0.20 0.13
Matches are distributed among these distances:
21 6 0.09
22 54 0.84
23 4 0.06
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.45
Consensus pattern (21 bp):
GTTAATAGTTTAAGGTTTATG
Found at i:76577444 original size:8 final size:8
Alignment explanation
Indices: 76577431--76577459 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
76577421 TTTTGGGATA
76577431 TGGTTTAG
1 TGGTTTAG
76577439 TGGTTT-G
1 TGGTTTAG
76577446 TGGTTTAG
1 TGGTTTAG
76577454 TGGTTT
1 TGGTTT
76577460 TGAGGATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.07, C:0.00, G:0.38, T:0.55
Consensus pattern (8 bp):
TGGTTTAG
Found at i:76577450 original size:37 final size:36
Alignment explanation
Indices: 76577402--76577481 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 36
76577392 AAGGGTTTTG
*
76577402 GGGTTTATGGTTTAGGTGTTTTTG-GGATATGGTTTA
1 GGGTTTATGGTTTA-GTGGTTTTGAGGATATGGTTTA
*
76577438 GTGGTTTGTGGTTTAGTGGTTTTGAGGATATGGTTTA
1 G-GGTTTATGGTTTAGTGGTTTTGAGGATATGGTTTA
76577475 GGGTTTA
1 GGGTTTA
76577482 AGGCTTATGA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
36 14 0.36
37 25 0.64
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.49
Consensus pattern (36 bp):
GGGTTTATGGTTTAGTGGTTTTGAGGATATGGTTTA
Found at i:76577451 original size:15 final size:15
Alignment explanation
Indices: 76577431--76577459 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
76577421 TTTTGGGATA
76577431 TGGTTTAGTGGTTTG
1 TGGTTTAGTGGTTTG
76577446 TGGTTTAGTGGTTT
1 TGGTTTAGTGGTTT
76577460 TGAGGATATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.00, G:0.38, T:0.55
Consensus pattern (15 bp):
TGGTTTAGTGGTTTG
Found at i:76579134 original size:26 final size:25
Alignment explanation
Indices: 76579097--76579180 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 25
76579087 TGATACAAAT
*
76579097 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
76579123 TGATAATGGGTTAGGTAAATGCTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
76579149 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
76579175 TGATAA
1 TGATAA
76579181 GAATATCATG
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
26 53 0.96
27 2 0.04
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:76581213 original size:136 final size:137
Alignment explanation
Indices: 76580967--76581252 Score: 502
Period size: 136 Copynumber: 2.1 Consensus size: 137
76580957 GAGTAGTCTC
*
76580967 CCCAAATGGGTTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
76581032 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATATGAAAAGGGCTCTAGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATATGAAAAGGGCTCTAGCCCAGTACC
76581097 ACTGTTA
131 ACTGTTA
*
76581104 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* * *
76581168 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCTAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATATGAAAAGGGCTCTAGCCCAGTACC
76581233 ACTGTTA
131 ACTGTTA
**
76581240 CCTGAATGGGCTT
1 CCCAAATGGGCTT
76581253 AGGCCCAATA
Statistics
Matches: 142, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
136 123 0.87
137 19 0.13
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATATGAAAAGGGCTCTAGCCCAGTACC
ACTGTTA
Found at i:76582454 original size:2 final size:2
Alignment explanation
Indices: 76582447--76582482 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
76582437 TATAGGGCAA
76582447 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76582483 GCATATTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76582488 original size:10 final size:10
Alignment explanation
Indices: 76582447--76582498 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
76582437 TATAGGGCAA
*
76582447 ATATATATAT
1 ATATATACAT
*
76582457 ATATATATAT
1 ATATATACAT
*
76582467 ATATATATAT
1 ATATATACAT
*
76582477 ATATATGCAT
1 ATATATACAT
*
76582487 ATTTATACAT
1 ATATATACAT
76582497 AT
1 AT
76582499 GATGGTCTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 38 1.00
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (10 bp):
ATATATACAT
Found at i:76584064 original size:105 final size:105
Alignment explanation
Indices: 76583866--76584333 Score: 760
Period size: 105 Copynumber: 4.4 Consensus size: 105
76583856 ATTTTAAATA
*
76583866 TTTTATTTTACTT-TTAAATTACCTAATTAAATTAAATTTTATTTAAAGTTTTATTTTGAATATG
1 TTTTATTTTA-TTGTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTG-A-A--
* *
76583930 TTATTTTATTTTAATTTAATTTAATCACGAAAAATATTTTGTCTAC
61 -TATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTTTAC
*
76583976 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTGAATATTT
1 TTTTATTTTATTGTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTGAATATTT
* * *
76584041 CATTTTATTTTAATTTAATCACGAAAAATATTTTATTTAA
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTTTAC
*
76584081 TTTTATTTTATTGTTGAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT-AATATTT
1 TTTTATTTTATTGTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTGAATATTT
76584145 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTTTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTTTAC
* * *
76584185 TTTTAATTTATTGTTAAATTACCTAATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTT
1 TTTTATTTTATTGTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTGAATATTT
*
76584250 TATTTTATTTTAATTTAATCACAAAAAATATTTTGTTTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTTTAC
76584290 TTTTATTTTATTGTTAAATTACCTAATTAAATTAAATTGTATTT
1 TTTTATTTTATTGTTAAATTACCTAATTAAATTAAATTGTATTT
76584334 TTAAATATTG
Statistics
Matches: 340, Mismatches: 16, Indels: 9
0.93 0.04 0.02
Matches are distributed among these distances:
104 98 0.29
105 184 0.54
108 1 0.00
109 3 0.01
110 54 0.16
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.55
Consensus pattern (105 bp):
TTTTATTTTATTGTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTGAATATTT
TATTTTATTTTAATTTAATCACGAAAAATATTTTGTTTAC
Found at i:76584220 original size:209 final size:212
Alignment explanation
Indices: 76583865--76584333 Score: 766
Period size: 209 Copynumber: 2.2 Consensus size: 212
76583855 TATTTTAAAT
*
76583865 ATTTTATTTTACTT-TTAAATTACCTAATTAAATTAAATTTTATTTAAAGTTTTATTTTGAATAT
1 ATTTTATTTTA-TTGTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT-AATA-
* *
76583929 GTTATTTTATTTTAATTTAATTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAA
63 -TTATTTTATTTTAATTTAATTTAATCACGAAAAATATTTTGTCTACTTTTAATTTATTGTTAAA
* *
76583994 TTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTGAATATTTCATTTTATTTTAATTTAA
127 TTACCTAATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTTCATTTTATTTTAATTTAA
*
76584059 TCACGAAAAATATTTTATTTA
192 TCACAAAAAATATTTTATTTA
*
76584080 ATTTTATTTTATTGTTGAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT-A-A-TA
1 ATTTTATTTTATTGTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAATATTA
* *
76584142 TTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTTTACTTTTAATTTATTGTTAAATTAC
66 TTTTATTTTAATTTAATTTAATCACGAAAAATATTTTGTCTACTTTTAATTTATTGTTAAATTAC
*
76584207 CTAATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTTTATTTTATTTTAATTTAATCAC
131 CTAATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTTCATTTTATTTTAATTTAATCAC
*
76584272 AAAAAATATTTTGTTTA
196 AAAAAATATTTTATTTA
*
76584289 CTTTTATTTTATTGTTAAATTACCTAATTAAATTAAATTGTATTT
1 ATTTTATTTTATTGTTAAATTACCTAATTAAATTAAATTGTATTT
76584334 TTAAATATTG
Statistics
Matches: 240, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
209 183 0.76
212 1 0.00
213 1 0.00
214 2 0.01
215 53 0.22
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (212 bp):
ATTTTATTTTATTGTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAATATTA
TTTTATTTTAATTTAATTTAATCACGAAAAATATTTTGTCTACTTTTAATTTATTGTTAAATTAC
CTAATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTTCATTTTATTTTAATTTAATCAC
AAAAAATATTTTATTTA
Found at i:76584244 original size:13 final size:14
Alignment explanation
Indices: 76584226--76584256 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
76584216 TTAAATTGTA
76584226 TTTAAA-ATTTTAT
1 TTTAAATATTTTAT
76584239 TTTAAATATTTTAT
1 TTTAAATATTTTAT
76584253 TTTA
1 TTTA
76584257 TTTTAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTAAATATTTTAT
Found at i:76584620 original size:9 final size:9
Alignment explanation
Indices: 76584598--76584737 Score: 69
Period size: 9 Copynumber: 16.0 Consensus size: 9
76584588 AAATATATAT
*
76584598 CATATCTTA
1 CATAACTTA
*
76584607 CATAATTTA
1 CATAACTTA
**
76584616 CATAAGATA
1 CATAACTTA
* *
76584625 AACAACTTA
1 CATAACTTA
*
76584634 CATAATTTA
1 CATAACTTA
76584643 CATAACTTA
1 CATAACTTA
76584652 CATAA--TA
1 CATAACTTA
*
76584659 CATAA-ATA
1 CATAACTTA
* *
76584667 TAT-ATTATA
1 CATAACT-TA
76584676 TCATAACTTA
1 -CATAACTTA
76584686 CATAACTTA
1 CATAACTTA
76584695 CATAA--TA
1 CATAACTTA
* *
76584702 TATAA-ATA
1 CATAACTTA
* * *
76584710 TATATCATA
1 CATAACTTA
76584719 TCATAACTTA
1 -CATAACTTA
76584729 CATAACTTA
1 CATAACTTA
76584738 ATTATACTTA
Statistics
Matches: 102, Mismatches: 21, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
7 14 0.14
8 10 0.10
9 66 0.65
10 10 0.10
11 2 0.02
ACGTcount: A:0.48, C:0.15, G:0.01, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:76584681 original size:43 final size:43
Alignment explanation
Indices: 76584634--76584737 Score: 181
Period size: 43 Copynumber: 2.4 Consensus size: 43
76584624 AAACAACTTA
* *
76584634 CATAATTTACATAACTTACATAATACATAAATATATATTATAT
1 CATAACTTACATAACTTACATAATACATAAATATATATCATAT
*
76584677 CATAACTTACATAACTTACATAATATATAAATATATATCATAT
1 CATAACTTACATAACTTACATAATACATAAATATATATCATAT
76584720 CATAACTTACATAACTTA
1 CATAACTTACATAACTTA
76584738 ATTATACTTA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (43 bp):
CATAACTTACATAACTTACATAATACATAAATATATATCATAT
Found at i:76584684 original size:34 final size:37
Alignment explanation
Indices: 76584643--76584718 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 37
76584633 ACATAATTTA
*
76584643 CATAACTTACATAA-TACATAA-ATATATAT-TATAT
1 CATAACTTACATAACTACATAATATATAAATATATAT
76584677 CATAACTTACATAACTTACATAATATATAAATATATAT
1 CATAACTTACATAAC-TACATAATATATAAATATATAT
76584715 CATA
1 CATA
76584719 TCATAACTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
34 14 0.38
36 7 0.19
37 7 0.19
38 9 0.24
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (37 bp):
CATAACTTACATAACTACATAATATATAAATATATAT
Found at i:76592406 original size:73 final size:73
Alignment explanation
Indices: 76592287--76592434 Score: 287
Period size: 73 Copynumber: 2.0 Consensus size: 73
76592277 AATTATTACT
*
76592287 GAAGTTTTGGGTCCTGAAAAGTATGGTTGGATTCGATTTCAAGGATCTGGTGTTACCCTGACCCA
1 GAAGTTTTGGGTCCTGAAAAGTATGGTCGGATTCGATTTCAAGGATCTGGTGTTACCCTGACCCA
76592352 ATATTTTG
66 ATATTTTG
76592360 GAAGTTTTGGGTCCTGAAAAGTATGGTCGGATTCGATTTCAAGGATCTGGTGTTACCCTGACCCA
1 GAAGTTTTGGGTCCTGAAAAGTATGGTCGGATTCGATTTCAAGGATCTGGTGTTACCCTGACCCA
76592425 ATATTTTG
66 ATATTTTG
76592433 GA
1 GA
76592435 TCCGGCTCCC
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (73 bp):
GAAGTTTTGGGTCCTGAAAAGTATGGTCGGATTCGATTTCAAGGATCTGGTGTTACCCTGACCCA
ATATTTTG
Found at i:76592790 original size:31 final size:31
Alignment explanation
Indices: 76592755--76592820 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
76592745 TGCATTTTTT
*
76592755 ATGCTACATTTG-TTGTTTTTGGTTGGATTCA
1 ATGCTACATTTGCTT-TTTTTGGTTGAATTCA
* *
76592786 ATGCTATATTTGCTTTTTTTGGTTGAATTTA
1 ATGCTACATTTGCTTTTTTTGGTTGAATTCA
76592817 ATGC
1 ATGC
76592821 AGAAAGGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 29 0.94
32 2 0.06
ACGTcount: A:0.18, C:0.09, G:0.20, T:0.53
Consensus pattern (31 bp):
ATGCTACATTTGCTTTTTTTGGTTGAATTCA
Found at i:76599838 original size:2 final size:2
Alignment explanation
Indices: 76599833--76599859 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76599823 TTTAAAAAAT
76599833 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
76599860 GGTATTAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.