Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 266 of 292
Found at i:76599939 original size:13 final size:13
Alignment explanation
Indices: 76599916--76599948 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76599906 TTGTACAGAA
76599916 ATTTTTA-TTTTT
1 ATTTTTATTTTTT
76599928 ATTTTTATTTTTT
1 ATTTTTATTTTTT
*
76599941 ATTCTTAT
1 ATTTTTAT
76599949 CAGATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (13 bp):
ATTTTTATTTTTT
Found at i:76600069 original size:39 final size:40
Alignment explanation
Indices: 76600008--76600083 Score: 111
Period size: 39 Copynumber: 1.9 Consensus size: 40
76599998 ATCGAGTTTG
*
76600008 ATGTCCTTATATTAATTGTTT-AATTATT-TTGCATATACA
1 ATGTACTTATATTAATTGTTTAAATTATTATT-CATATACA
*
76600047 ATGTACTTATATTAATTTTTTAAATTATTATTCATAT
1 ATGTACTTATATTAATTGTTTAAATTATTATTCATAT
76600084 TTGGTAAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
39 19 0.58
40 12 0.36
41 2 0.06
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.54
Consensus pattern (40 bp):
ATGTACTTATATTAATTGTTTAAATTATTATTCATATACA
Found at i:76601634 original size:15 final size:16
Alignment explanation
Indices: 76601616--76601648 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
76601606 AATATATTTT
76601616 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
76601631 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
76601648 T
1 T
76601649 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:76601734 original size:22 final size:22
Alignment explanation
Indices: 76601695--76601753 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
76601685 GTTTTAAGAA
*
76601695 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
76601716 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
76601738 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
76601754 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:76601770 original size:26 final size:24
Alignment explanation
Indices: 76601724--76601783 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
76601714 ATTTGTTTTA
*
76601724 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
76601748 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
76601774 TTTTTTATTT
1 ATATTTATTT
76601784 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:76607077 original size:23 final size:22
Alignment explanation
Indices: 76607051--76607135 Score: 52
Period size: 23 Copynumber: 3.8 Consensus size: 22
76607041 ATAACATATT
76607051 TTAAAAATACATAAATTTGTTGA
1 TTAAAAATA-ATAAATTTGTTGA
** *
76607074 TTAAATTTACAT--ATTTATTGA
1 TTAAAAATA-ATAAATTTGTTGA
* *
76607095 TTTAAAATTTTAATAAATTTTTTGA
1 -TTAAAA--ATAATAAATTTGTTGA
76607120 TT--AAATAATAAATTTG
1 TTAAAAATAATAAATTTG
76607136 GTTTAATAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
20 10 0.20
21 8 0.16
22 7 0.14
23 12 0.24
24 5 0.10
25 8 0.16
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (22 bp):
TTAAAAATAATAAATTTGTTGA
Found at i:76609406 original size:2 final size:2
Alignment explanation
Indices: 76609399--76609425 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76609389 TATTTAATTG
76609399 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
76609426 ACAGGCAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76612160 original size:14 final size:14
Alignment explanation
Indices: 76612141--76612170 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
76612131 CTATAGGTAA
76612141 GACTGATCAAAACT
1 GACTGATCAAAACT
76612155 GACTGATCAAAACT
1 GACTGATCAAAACT
76612169 GA
1 GA
76612171 TGTTTTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (14 bp):
GACTGATCAAAACT
Found at i:76621979 original size:46 final size:46
Alignment explanation
Indices: 76621927--76622100 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
76621917 TGGTTGAGCA
76621927 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
76621973 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
76622018 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
76622066 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
76622101 TGGCGGGTTA
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76622083 original size:93 final size:93
Alignment explanation
Indices: 76621924--76622094 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
76621914 GGATGGTTGA
* **
76621924 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76621989 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
76622017 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76622082 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
76622095 ACTTATTGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76624968 original size:46 final size:45
Alignment explanation
Indices: 76624917--76625083 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 45
76624907 GACGAGGGCT
76624917 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGAGCC
* **
76624963 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGAGCC
* * * * * * * *
76625009 TGTGTCAGACATGTCTTGGACATGCGTCGGCTACA-A-GATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GAGCC
* *
76625053 AGTGTAAGACATGTCTAGGACATGCGTCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
76625084 ACGGTTACAT
Statistics
Matches: 101, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
43 1 0.01
44 30 0.30
45 1 0.01
46 67 0.66
47 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAGCC
Found at i:76628555 original size:46 final size:46
Alignment explanation
Indices: 76628503--76628676 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
76628493 TGGTTGAGCA
* *
76628503 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * * *
76628549 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
76628594 CATCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
76628642 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTAT
76628677 TGGCGGGTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 61 0.58
47 25 0.24
48 4 0.04
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:76628659 original size:93 final size:93
Alignment explanation
Indices: 76628500--76628670 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
76628490 GGATGGTTGA
* * * ** *
76628500 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
76628565 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
76628593 GCATCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
76628658 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
76628671 ACTTATTGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76631330 original size:2 final size:2
Alignment explanation
Indices: 76631323--76631356 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
76631313 TATGTTTGAT
76631323 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76631357 AAAGAATTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:76637919 original size:17 final size:19
Alignment explanation
Indices: 76637878--76637922 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
76637868 TTTTAATTAA
76637878 ATAAATAT-AATTTTATAT
1 ATAAATATGAATTTTATAT
76637896 ATAAATATGAA-TTTAT-T
1 ATAAATATGAATTTTATAT
*
76637913 TTAAATATGA
1 ATAAATATGA
76637923 TAGTAATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 10 0.40
18 13 0.52
19 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (19 bp):
ATAAATATGAATTTTATAT
Found at i:76639311 original size:26 final size:26
Alignment explanation
Indices: 76639257--76639311 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
76639247 AGATGTTTAG
* *
76639257 TTATTATTATTTGATATTCGATAGTT
1 TTATTATTATTTGATATTCAATAATT
*
76639283 TTATTATTATTTGAT-TTTAATAATAT
1 TTATTATTATTTGATATTCAATAAT-T
76639309 TTA
1 TTA
76639312 CATAATTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.31, C:0.02, G:0.07, T:0.60
Consensus pattern (26 bp):
TTATTATTATTTGATATTCAATAATT
Found at i:76639829 original size:17 final size:18
Alignment explanation
Indices: 76639793--76639833 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
76639783 CTCAACCCAT
*
76639793 AAATAAAATTATTTCTTA
1 AAATAAAATTATATCTTA
*
76639811 AAATATAATTATATC-TA
1 AAATAAAATTATATCTTA
76639828 AAATAA
1 AAATAA
76639834 TATCTTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATAAAATTATATCTTA
Found at i:76640332 original size:2 final size:2
Alignment explanation
Indices: 76640327--76640358 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
76640317 ATTCTCTCTC
76640327 TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
76640359 CCAGAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:76642998 original size:22 final size:22
Alignment explanation
Indices: 76642973--76643014 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
76642963 ATTGTTAACA
*
76642973 TATATAATT-ATTTTAAATTTTT
1 TATA-AATTCATTTGAAATTTTT
76642995 TATAAATTCATTTGAAATTT
1 TATAAATTCATTTGAAATTT
76643015 GTTGATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
TATAAATTCATTTGAAATTTTT
Found at i:76643273 original size:19 final size:18
Alignment explanation
Indices: 76643242--76643281 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
76643232 TAATGATATA
*
76643242 TATATAATATATATTTTT
1 TATATAATATATATTTAT
76643260 TATATAATTATATATTTAT
1 TATATAA-TATATATTTAT
76643279 TAT
1 TAT
76643282 TTTATTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATATAATATATATTTAT
Found at i:76644589 original size:21 final size:22
Alignment explanation
Indices: 76644542--76644582 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
76644532 AAATATCGTT
76644542 AAAAATAGTAGTTATGAAATAA
1 AAAAATAGTAGTTATGAAATAA
*
76644564 AAAAATAGTATTTAT-AAAT
1 AAAAATAGTAGTTATGAAAT
76644583 TATAAAACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (22 bp):
AAAAATAGTAGTTATGAAATAA
Found at i:76644589 original size:22 final size:22
Alignment explanation
Indices: 76644541--76644589 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
76644531 CAAATATCGT
76644541 TAAAAATAGTAGTTATGAAATA
1 TAAAAATAGTAGTTATGAAATA
* *
76644563 AAAAAATAGTATTTAT-AAATTA
1 TAAAAATAGTAGTTATGAAA-TA
76644585 TAAAA
1 TAAAA
76644590 CAGACATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (22 bp):
TAAAAATAGTAGTTATGAAATA
Found at i:76646949 original size:30 final size:29
Alignment explanation
Indices: 76646892--76646949 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
76646882 GTTTAATGTG
* *
76646892 TAATTTTATATGTGAATTTTGATTTTGAA
1 TAATTTTATATATGAATTTTGAATTTGAA
*
76646921 TAATTTTATATATGAAATTTTTAATTTGA
1 TAATTTTATATATG-AATTTTGAATTTGA
76646950 TTCAGTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 13 0.52
30 12 0.48
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (29 bp):
TAATTTTATATATGAATTTTGAATTTGAA
Found at i:76651149 original size:16 final size:16
Alignment explanation
Indices: 76651117--76651151 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
76651107 TGTTATCTTC
**
76651117 AATTTTTTATTTCAAT
1 AATTTTTTATTAAAAT
76651133 AATTTTTTATTAAAAT
1 AATTTTTTATTAAAAT
76651149 AAT
1 AAT
76651152 AAGAATATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (16 bp):
AATTTTTTATTAAAAT
Found at i:76656451 original size:15 final size:15
Alignment explanation
Indices: 76656411--76656455 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
76656401 CGATAACTTT
76656411 AATAATTAAAATAT-
1 AATAATTAAAATATA
* * *
76656425 ATTATTTTAAATATA
1 AATAATTAAAATATA
76656440 AATAATTAAAATATA
1 AATAATTAAAATATA
76656455 A
1 A
76656456 TGTGAGATAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AATAATTAAAATATA
Found at i:76662967 original size:16 final size:16
Alignment explanation
Indices: 76662935--76662969 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
76662925 TATACTATGT
76662935 GAGGATAAGAATCAAG
1 GAGGATAAGAATCAAG
76662951 GAGGACTAAGAAT-AAG
1 GAGGA-TAAGAATCAAG
76662967 GAG
1 GAG
76662970 AATGGAAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.49, C:0.06, G:0.34, T:0.11
Consensus pattern (16 bp):
GAGGATAAGAATCAAG
Found at i:76666366 original size:21 final size:21
Alignment explanation
Indices: 76666340--76666380 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76666330 AGACGAGCGA
* *
76666340 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
76666361 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
76666381 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:76670091 original size:17 final size:17
Alignment explanation
Indices: 76670071--76670106 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
76670061 CCTAACCCCC
*
76670071 AAAAAAAA-ACAAAGAA
1 AAAAAAAAGAAAAAGAA
76670087 AAAAAAAAGAAAAAGAA
1 AAAAAAAAGAAAAAGAA
76670104 AAA
1 AAA
76670107 CCTACTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAGAA
Found at i:76670105 original size:11 final size:11
Alignment explanation
Indices: 76670073--76670106 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
76670063 TAACCCCCAA
76670073 AAAAAAACAAAG
1 AAAAAAA-AAAG
76670085 AAAAAAAAAAG
1 AAAAAAAAAAG
76670096 AAAAAGAAAAA
1 AAAAA-AAAAA
76670107 CCTACTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:76672715 original size:12 final size:12
Alignment explanation
Indices: 76672695--76672730 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
76672685 ATTCATTTAA
76672695 CATTCATGCATT
1 CATTCATGCATT
*
76672707 CATTTATGCATT
1 CATTCATGCATT
*
76672719 CATTCATTCATT
1 CATTCATGCATT
76672731 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:76675086 original size:28 final size:28
Alignment explanation
Indices: 76675052--76675108 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
76675042 TTGGTTCCAA
76675052 TACTTGGATGCCCCTCTATAGTTTCCTT
1 TACTTGGATGCCCCTCTATAGTTTCCTT
76675080 TACTTGGATGCCCCTCTATAGTTTCCTT
1 TACTTGGATGCCCCTCTATAGTTTCCTT
76675108 T
1 T
76675109 TCCATTCAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.44
Consensus pattern (28 bp):
TACTTGGATGCCCCTCTATAGTTTCCTT
Found at i:76679769 original size:87 final size:88
Alignment explanation
Indices: 76679666--76679919 Score: 287
Period size: 87 Copynumber: 2.8 Consensus size: 88
76679656 TTTGTTTTTC
76679666 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTAATTTCTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTAATTTCTG
* **
76679731 TTTTCATTATTATGT-TTT-TGAA
66 TTTTCAAT-TTATGTCTTTAAAAA
* * *
76679753 AGAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCCGAGGTATTTT-AATTT
* *
76679818 CCGTTTTTCAATTTCTGTCTTTCAAAAAA
63 CTG-TTTTCAATTTATGTCTTT--AAAAA
** * * * *
76679847 AAAAAAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGT-ATTTTAATTTCT
*
76679912 GTTGTCAA
65 GTTTTCAA
76679920 AAAATCAACT
Statistics
Matches: 139, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
87 38 0.27
89 16 0.12
90 12 0.09
91 16 0.12
92 16 0.12
93 4 0.03
94 37 0.27
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (88 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTAATTTCTG
TTTTCAATTTATGTCTTTAAAAA
Found at i:76679827 original size:14 final size:14
Alignment explanation
Indices: 76679808--76679842 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
76679798 CGCCGAGGTA
76679808 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
76679822 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
76679836 CTTTCAA
1 TTTTCAA
76679843 AAAAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:76679878 original size:94 final size:89
Alignment explanation
Indices: 76679672--76679919 Score: 279
Period size: 94 Copynumber: 2.8 Consensus size: 89
76679662 TTTCAAAATC
*
76679672 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-CACGCCGAGGTATTTT-AATTTCTGTTTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCCGAGGTATTTTCAATTTCCGTTTT
* ** * **
76679735 CATTATTATGTTTTTGAAAGAATC
66 CAATATTATGTTTTAAAAAAAAAA
* *
76679759 AACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-ACACGCCGAGGTATTTTCAATTTCCG-TT
*
76679824 TTCAAT-TTCTGTCTTTCAAAAAAAAAAAA
64 TTCAATATTATGT-TTT---AAAAAAAAAA
* * * * *
76679853 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAAGTAATTTCAATTTCTGTTGT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCCGAGGTATTTTCAATTTCCGTTTT
76679917 CAA
66 CAA
76679920 AAAATCAACT
Statistics
Matches: 136, Mismatches: 17, Indels: 12
0.82 0.10 0.07
Matches are distributed among these distances:
87 33 0.24
89 16 0.12
90 12 0.09
91 16 0.12
92 22 0.16
94 37 0.27
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (89 bp):
AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCCGAGGTATTTTCAATTTCCGTTTT
CAATATTATGTTTTAAAAAAAAAA
Found at i:76680150 original size:76 final size:75
Alignment explanation
Indices: 76679989--76680155 Score: 221
Period size: 74 Copynumber: 2.2 Consensus size: 75
76679979 CAATTTCCGT
* *
76679989 TTTTCAATTTCTGCCTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGAC
1 TTTTCAATTTCTG--TTGTAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTTAAGAC
*
76680054 ACGCTGAGGTAA
64 ACGCCGAGGTAA
* * * *
76680066 TTTT-AATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTTAGGTCAC
1 TTTTCAATTTCTGTTGTAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTTAAG--AC
76680130 ACGCCGAGGT-A
64 ACGCCGAGGTAA
76680141 TTTTCAATTTCTGTT
1 TTTTCAATTTCTGTT
76680156 TTTCAATTTC
Statistics
Matches: 80, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
74 42 0.52
75 5 0.06
76 29 0.36
77 4 0.05
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (75 bp):
TTTTCAATTTCTGTTGTAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTTAAGACAC
GCCGAGGTAA
Found at i:76680160 original size:14 final size:14
Alignment explanation
Indices: 76680141--76680175 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
76680131 CGCCGAGGTA
76680141 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
76680155 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
*
76680169 CTTTCAA
1 TTTTCAA
76680176 AAAAATCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:76680180 original size:165 final size:165
Alignment explanation
Indices: 76679755--76680380 Score: 830
Period size: 167 Copynumber: 3.8 Consensus size: 165
76679745 TTTTTGAAAG
76679755 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
** *
76679820 GTTTTTCAATTTCTGTCTTTCAAAAAAAAAAAAAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 GTTTTTCAATTTCTGTCTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTA
* * *
76679885 GGACACGCTGAAGTAATTTCAATTTCTGTTGTC-AAAA
128 AGACACGCTGAGGTAATTTTAATTTCTGTTGTCAAAAA
* *
76679922 AATCAACTCGTATTACGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* *
76679987 GTTTTTCAATTTCTGCCTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAG
66 GTTTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAG
76680052 ACACGCTGAGGTAATTTTAATTTCTGTTGTCAAAAA
130 ACACGCTGAGGTAATTTTAATTTCTGTTGTCAAAAA
* * *
76680088 AATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTCAATTTCT
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
*
76680153 GTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAG-CTTCAGA
66 GTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-A-A
* * * * * *
76680217 TCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAA
129 -GACACGCTGAGGTA-ATTTT-AATTTCT-GTTGTCAAAAA
** * * * * * * ** *
76680258 AATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCT
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* *
76680323 GTTTTTCAAATTCTGT-TTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
66 GTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
76680381 GGCTCACGTG
Statistics
Matches: 411, Mismatches: 39, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
164 3 0.01
165 107 0.26
166 81 0.20
167 123 0.30
168 10 0.02
169 10 0.02
170 77 0.19
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (165 bp):
AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
GTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGA
CACGCTGAGGTAATTTTAATTTCTGTTGTCAAAAA
Found at i:76680230 original size:91 final size:91
Alignment explanation
Indices: 76680066--76680254 Score: 258
Period size: 91 Copynumber: 2.1 Consensus size: 91
76680056 GCTGAGGTAA
* *
76680066 TTTT-AATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTTAGGTCAC
1 TTTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGTGAGAGGCGAGTTGAGCCTTAGATCAC
* * *
76680130 ACGCCGAGGTA-TTTTCAATTTCTGT
66 ACACCGAGGTATTTTTCAATTTATAT
* *
76680155 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGT-TGTCAAAAAAATCAACTCATATTGTGAGAGGCGAGTTGAGCCTT-AGATC
*
76680219 ACACACTGAGGTATTTTTTCAATTTATAT
64 ACACACCGAGGTA-TTTTTCAATTTATAT
76680248 TTTTCAA
1 TTTTCAA
76680255 AAAAATCAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
89 4 0.05
90 12 0.14
91 52 0.60
93 19 0.22
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (91 bp):
TTTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGTGAGAGGCGAGTTGAGCCTTAGATCAC
ACACCGAGGTATTTTTCAATTTATAT
Found at i:76680317 original size:170 final size:166
Alignment explanation
Indices: 76679755--76680459 Score: 825
Period size: 167 Copynumber: 4.2 Consensus size: 166
76679745 TTTTTGAAAG
76679755 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
** *
76679820 GTTTTTCAATTTCTGTCTTTCAAAAAAAAAAAAAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 GTTTTTCAATTTCTGTCTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTA
* * * *
76679885 G-GACACGCTGAAGTAATTTCAATTTCTGTTGTC-AAAA
128 GACACACGCTGAGGTATTTTCAATTTATGTTGTCAAAAA
* *
76679922 AATCAACTCGTATTACGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* *
76679987 GTTTTTCAATTTCTGCCTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTA-A
66 GTTTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGA
* *
76680051 GACACGCTGAGGTAATTTT-AATTTCTGTTGTCAAAAA
130 CACACGCTGAGGT-ATTTTCAATTTATGTTGTCAAAAA
* * *
76680088 AATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTCAATTTCT
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
*
76680153 GTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAG-CTTCAGA
66 GTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-AGA
* * *
76680217 TCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAA
130 -CACACGCTGAGGTA--TTTTCAATTTAT-GTTGTCAAAAA
** * * * * * * ** *
76680258 AATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCT
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* * *
76680323 GTTTTTCAAATTCTGT-TTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT-GGC
66 GTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGAC
* * * *
76680384 TCACGTGCTGAGCTATTTTCAATTTCTATTTTTTTTTCAAAAA
131 ACAC--GCTGAGGTATTTTCAA-TT-TA---TGTTGTCAAAAA
* *
76680427 AATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AA-TCAACTCGTATTGCGAGAGGCGAGTTGAGC
76680460 TTTTTAATTT
Statistics
Matches: 475, Mismatches: 43, Indels: 37
0.86 0.08 0.07
Matches are distributed among these distances:
164 3 0.01
165 113 0.24
166 89 0.19
167 131 0.28
168 10 0.02
169 23 0.05
170 106 0.22
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (166 bp):
AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
GTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGAC
ACACGCTGAGGTATTTTCAATTTATGTTGTCAAAAA
Found at i:76680330 original size:14 final size:13
Alignment explanation
Indices: 76680311--76680346 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
76680301 TGTCGAGGTA
76680311 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
76680324 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
76680338 TTTTCAAAA
1 TTTTCAAAA
76680347 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:76680416 original size:88 final size:88
Alignment explanation
Indices: 76680255--76680416 Score: 218
Period size: 88 Copynumber: 1.8 Consensus size: 88
76680245 TATTTTTCAA
* * * *
76680255 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
*
76680320 TCTGTTTTTCAAATTCTGTTTTC
66 TCTATTTTTCAAATTCTGTTTTC
* * * *
76680343 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAT
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAA
*
76680407 TTCTATTTTT
65 ATCTATTTTT
76680417 TTTTCAAAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 1 0.02
88 62 0.98
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
TCTATTTTTCAAATTCTGTTTTC
Found at i:76680477 original size:30 final size:30
Alignment explanation
Indices: 76680441--76680502 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
76680431 CAACTCATAT
76680441 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
76680471 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
76680501 TG
1 TG
76680503 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:76681335 original size:17 final size:17
Alignment explanation
Indices: 76681315--76681350 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
76681305 AACCTAACCC
*
76681315 AAAAAAAA-ACAAAGAA
1 AAAAAAAAGAAAAAGAA
76681331 AAAAAAAAGAAAAAGAA
1 AAAAAAAAGAAAAAGAA
76681348 AAA
1 AAA
76681351 CCTACCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAGAA
Found at i:76681349 original size:11 final size:11
Alignment explanation
Indices: 76681317--76681350 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
76681307 CCTAACCCAA
76681317 AAAAAAACAAAG
1 AAAAAAA-AAAG
76681329 AAAAAAAAAAG
1 AAAAAAAAAAG
76681340 AAAAAGAAAAA
1 AAAAA-AAAAA
76681351 CCTACCCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:76684217 original size:21 final size:21
Alignment explanation
Indices: 76684193--76684245 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
76684183 ATAATTATGT
76684193 TTATTTTCTTTAAATT-AAGAA
1 TTATTTT-TTTAAATTCAAGAA
* *
76684214 TTATTTTTTTAACTTCATGAA
1 TTATTTTTTTAAATTCAAGAA
*
76684235 TTATTTATTTA
1 TTATTTTTTTA
76684246 TTTTATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 7 0.25
21 21 0.75
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (21 bp):
TTATTTTTTTAAATTCAAGAA
Found at i:76684259 original size:33 final size:33
Alignment explanation
Indices: 76684218--76684290 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
76684208 TAAGAATTAT
76684218 TTTTTTAACTTCATGAATTATTTATTTATTTTA
1 TTTTTTAACTTCATGAATTATTTATTTATTTTA
76684251 TTTTTTAACTTCATGAATTATTTATTTATTTTA
1 TTTTTTAACTTCATGAATTATTTATTTATTTTA
76684284 TTGTTTT
1 TT-TTTT
76684291 CCATATGTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
33 35 0.90
34 4 0.10
ACGTcount: A:0.25, C:0.05, G:0.04, T:0.66
Consensus pattern (33 bp):
TTTTTTAACTTCATGAATTATTTATTTATTTTA
Found at i:76684303 original size:33 final size:33
Alignment explanation
Indices: 76684218--76684306 Score: 119
Period size: 33 Copynumber: 2.7 Consensus size: 33
76684208 TAAGAATTAT
*
76684218 TTTTTTAACTTCATGAATTATTTATTTATTTTA
1 TTTTTTAACATCATGAATTATTTATTTATTTTA
*
76684251 TTTTTTAACTTCATGAATTATTTATTTATTTTA
1 TTTTTTAACATCATGAATTATTTATTTATTTTA
*
76684284 TTGTTTT-CCAT-ATGTAATTATTT
1 TT-TTTTAACATCATG-AATTATTT
76684307 TATTGGGTTA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
32 3 0.06
33 45 0.87
34 4 0.08
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (33 bp):
TTTTTTAACATCATGAATTATTTATTTATTTTA
Found at i:76686313 original size:23 final size:23
Alignment explanation
Indices: 76686283--76686326 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
76686273 ACCGCCTTCT
*
76686283 TACATTTAAATGAATCTAATACA
1 TACATTTAAATGAATCCAATACA
*
76686306 TACATTTAGATGAATCCAATA
1 TACATTTAAATGAATCCAATA
76686327 AATCCCATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (23 bp):
TACATTTAAATGAATCCAATACA
Found at i:76687901 original size:25 final size:25
Alignment explanation
Indices: 76687873--76687927 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
76687863 TTATGAGATA
*
76687873 AATAATTAAATTGTGATATTTTTGT
1 AATAATTAAATTGTGAGATTTTTGT
76687898 AATAATTAAATTGTGAGATTTTTGT
1 AATAATTAAATTGTGAGATTTTTGT
76687923 -ATAAT
1 AATAAT
76687928 AAACAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (25 bp):
AATAATTAAATTGTGAGATTTTTGT
Found at i:76687935 original size:27 final size:25
Alignment explanation
Indices: 76687880--76687936 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
76687870 ATAAATAATT
* **
76687880 AAATTGTGATATTTTTGTAATAATT
1 AAATTGTGAGATTTTTGTAATAAAC
76687905 AAATTGTGAGATTTTTGTATAATAAAC
1 AAATTGTGAGATTTTTG--TAATAAAC
76687932 AAATT
1 AAATT
76687937 AAGTAGTGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 16 0.59
27 11 0.41
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (25 bp):
AAATTGTGAGATTTTTGTAATAAAC
Found at i:76689380 original size:18 final size:18
Alignment explanation
Indices: 76689357--76689397 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
76689347 ATTAATATAC
76689357 AATAATAATT-TTTAATAT
1 AATAATAATTATTTAA-AT
*
76689375 AATAATATTTATTTAAAT
1 AATAATAATTATTTAAAT
76689393 AATAA
1 AATAA
76689398 ATACATACGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AATAATAATTATTTAAAT
Found at i:76689393 original size:20 final size:20
Alignment explanation
Indices: 76689341--76689393 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 20
76689331 TTATTTATTT
*
76689341 TATTTAATTAATATACAATAA
1 TATTTATTTAA-ATACAATAA
* *
76689362 TAATT-TTT-AATATAATAA
1 TATTTATTTAAATACAATAA
76689380 TATTTATTTAAATA
1 TATTTATTTAAATA
76689394 ATAAATACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
18 12 0.46
19 4 0.15
20 6 0.23
21 4 0.15
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTTATTTAAATACAATAA
Found at i:76689461 original size:20 final size:20
Alignment explanation
Indices: 76689421--76689457 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
76689411 TTACAAATGT
76689421 ATGTATAATATTTATTACAC
1 ATGTATAATATTTATTACAC
*
76689441 ATGTAT-ATTTTTATTAC
1 ATGTATAATATTTATTAC
76689458 CACACATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.35, C:0.08, G:0.05, T:0.51
Consensus pattern (20 bp):
ATGTATAATATTTATTACAC
Found at i:76689799 original size:20 final size:20
Alignment explanation
Indices: 76689780--76689816 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
76689770 CAAATGTGTG
76689780 GTAATAAA-AATATACATGT
1 GTAATAAATAATATACATGT
*
76689799 GTAATAAATATTATACAT
1 GTAATAAATAATATACAT
76689817 ACATTTGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.51, C:0.05, G:0.08, T:0.35
Consensus pattern (20 bp):
GTAATAAATAATATACATGT
Found at i:76690033 original size:18 final size:18
Alignment explanation
Indices: 76690006--76690041 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
76689996 GTTATTGAAT
76690006 AGATAATTATTAAGTAAA
1 AGATAATTATTAAGTAAA
* *
76690024 AGATATTTATTAATTAAA
1 AGATAATTATTAAGTAAA
76690042 CAATTGAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
AGATAATTATTAAGTAAA
Found at i:76692462 original size:16 final size:16
Alignment explanation
Indices: 76692441--76692480 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
76692431 ATATATTAGT
76692441 TAATAATAATA-AATTA
1 TAATAATAATATAA-TA
76692457 TAATAATAATATAATA
1 TAATAATAATATAATA
76692473 TAATAATA
1 TAATAATA
76692481 TTTAATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 21 0.91
17 2 0.09
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TAATAATAATATAATA
Found at i:76692481 original size:13 final size:14
Alignment explanation
Indices: 76692441--76692481 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 14
76692431 ATATATTAGT
76692441 TAATAATAATAA-A
1 TAATAATAATAATA
*
76692454 TTATAATAATAATA
1 TAATAATAATAATA
76692468 TAAT-ATAATAATA
1 TAATAATAATAATA
76692481 T
1 T
76692482 TTAATTCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 21 0.84
14 4 0.16
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATAATAATAATA
Found at i:76693390 original size:70 final size:70
Alignment explanation
Indices: 76693285--76693458 Score: 294
Period size: 70 Copynumber: 2.5 Consensus size: 70
76693275 TGGTTTTTAA
* *
76693285 TTTCATGTTTTATCTATAGTACTTATAAAACCTGCCTCACTTGGATGGTTTAATAGAGAAAAGTT
1 TTTCATGTTTTATCTATACTACTTATAAAACCTGCCTCACTTGGATGGTTTAACAGAGAAAAGTT
76693350 TTTGG
66 TTTGG
* **
76693355 TTTCACGTTTTATCTATACTACTTATAAAACCTGCCTCACTTGGATGGTTTAACAGAGAAGGGTT
1 TTTCATGTTTTATCTATACTACTTATAAAACCTGCCTCACTTGGATGGTTTAACAGAGAAAAGTT
76693420 TTTGG
66 TTTGG
*
76693425 TTTCATGTTTTCTCTATACTACTTATAAAACCTG
1 TTTCATGTTTTATCTATACTACTTATAAAACCTG
76693459 TCCAATATTA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
70 97 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (70 bp):
TTTCATGTTTTATCTATACTACTTATAAAACCTGCCTCACTTGGATGGTTTAACAGAGAAAAGTT
TTTGG
Found at i:76694938 original size:2 final size:2
Alignment explanation
Indices: 76694933--76694964 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
76694923 CTCGATCTTT
76694933 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76694965 GATTACAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:76699589 original size:3 final size:3
Alignment explanation
Indices: 76699581--76699624 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
76699571 TTAACCACCT
76699581 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
76699625 GAAAGCAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:76703061 original size:41 final size:39
Alignment explanation
Indices: 76702994--76703079 Score: 102
Period size: 41 Copynumber: 2.2 Consensus size: 39
76702984 ATTTCATTAA
76702994 ATTTTTAAAATTAAAAAAATCAAAAAATTATAAAAAAAAC
1 ATTTTTAAAATTAAAAAAATCAAAAAATT-TAAAAAAAAC
* * * *
76703034 TATTTTTAAAAATTAGAAATAT-TAAAAATTTATAAAAAAC
1 -ATTTTT-AAAATTAAAAAAATCAAAAAATTTAAAAAAAAC
76703074 ATTTTT
1 ATTTTT
76703080 CCCACAATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
39 6 0.15
40 9 0.22
41 13 0.32
42 12 0.30
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (39 bp):
ATTTTTAAAATTAAAAAAATCAAAAAATTTAAAAAAAAC
Found at i:76703061 original size:42 final size:41
Alignment explanation
Indices: 76702994--76703072 Score: 113
Period size: 42 Copynumber: 1.9 Consensus size: 41
76702984 ATTTCATTAA
76702994 ATTTTTAAAATTAAAAAAATCAAAAAATTATAAAAAAAACT
1 ATTTTTAAAATTAAAAAAATCAAAAAATTATAAAAAAAACT
* * * *
76703035 ATTTTTAAAAATTAGAAATATTAAAAATTTATAAAAAA
1 ATTTTT-AAAATTAAAAAAATCAAAAAATTATAAAAAA
76703073 CATTTTTCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
41 6 0.18
42 27 0.82
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (41 bp):
ATTTTTAAAATTAAAAAAATCAAAAAATTATAAAAAAAACT
Found at i:76718851 original size:15 final size:15
Alignment explanation
Indices: 76718818--76718865 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
76718808 ATTGATTTGC
* *
76718818 ATAAATACATATATT
1 ATAAATACATAAAAT
*
76718833 ATAAATACATAAAAA
1 ATAAATACATAAAAT
76718848 AT-AATA-ATAAAAT
1 ATAAATACATAAAAT
76718861 ATAAA
1 ATAAA
76718866 AAAATTACCT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
13 8 0.29
14 6 0.21
15 14 0.50
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (15 bp):
ATAAATACATAAAAT
Found at i:76719643 original size:26 final size:25
Alignment explanation
Indices: 76719572--76719655 Score: 93
Period size: 24 Copynumber: 3.3 Consensus size: 25
76719562 TTCTAATATG
*
76719572 TATATATTATGTAA-ATA-TTTTAA
1 TATATATTATGTAATATATTTTTTA
76719595 TACTATATTATGT-ATATATTTTTTA
1 TA-TATATTATGTAATATATTTTTTA
*
76719620 TATATGTTATGTACATATATTTTTTAA
1 TATATATTATGTA-ATATATTTTTT-A
76719647 TATTATATT
1 TA-TATATT
76719656 TTTATATATT
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
23 3 0.06
24 22 0.43
25 7 0.14
26 11 0.22
27 3 0.06
28 5 0.10
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (25 bp):
TATATATTATGTAATATATTTTTTA
Found at i:76719662 original size:13 final size:15
Alignment explanation
Indices: 76719635--76719667 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
76719625 GTTATGTACA
76719635 TATATTTTTTAATAT
1 TATATTTTTTAATAT
76719650 TATA-TTTTTATATAT
1 TATATTTTTTA-ATAT
76719665 TAT
1 TAT
76719668 TATGTATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TATATTTTTTAATAT
Found at i:76719718 original size:47 final size:49
Alignment explanation
Indices: 76719576--76719774 Score: 151
Period size: 48 Copynumber: 4.3 Consensus size: 49
76719566 AATATGTATA
* * *
76719576 TATTATGTAAATATTT-TAATACTATATTATGTATATATTTTTTATA-TA-
1 TATTATGTATATATTTCTAATTCTATA-TAT-TATATATTTTTTATACCAT
* * *
76719624 TGTTATGTACATATATT-T--TT-TA-ATA-T-TATA-TTTTTATA-TAT
1 TATTATGTATATAT-TTCTAATTCTATATATTATATATTTTTTATACCAT
76719665 TATTATGTATATATTT-TAATATC-AT-TAGTTATATATTTTTTATACCAT
1 TATTATGTATATATTTCTAAT-TCTATATA-TTATATATTTTTTATACCAT
* * *
76719713 T-TTATGTATATATTTCTAATTCTATATATTGTATATTTCTAATACCAT
1 TATTATGTATATATTTCTAATTCTATATATTATATATTTTTTATACCAT
*
76719761 TATTATTTATATAT
1 TATTATGTATATAT
76719775 GTATATATGT
Statistics
Matches: 125, Mismatches: 10, Indels: 31
0.75 0.06 0.19
Matches are distributed among these distances:
40 13 0.10
41 16 0.13
42 2 0.02
43 4 0.03
44 2 0.02
45 2 0.02
46 6 0.05
47 25 0.20
48 39 0.31
49 16 0.13
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (49 bp):
TATTATGTATATATTTCTAATTCTATATATTATATATTTTTTATACCAT
Found at i:76719767 original size:25 final size:24
Alignment explanation
Indices: 76719663--76719772 Score: 79
Period size: 23 Copynumber: 4.6 Consensus size: 24
76719653 ATTTTTATAT
*
76719663 ATTATTATGTATATATTT-TAATATC
1 ATTATTAT-T-TATATTTCTAATACC
* *
76719688 ATTAGTTA--TATATTTTTTATACC
1 ATTA-TTATTTATATTTCTAATACC
* *
76719711 ATT-TTATGTATATATTTCTAATTCT
1 ATTATTAT-T-TATATTTCTAATACC
76719736 A-TA-TATTGTATATTTCTAATACC
1 ATTATTATT-TATATTTCTAATACC
76719759 ATTATTATTTATAT
1 ATTATTATTTATAT
76719773 ATGTATATAT
Statistics
Matches: 67, Mismatches: 9, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
21 3 0.04
22 7 0.10
23 23 0.34
24 11 0.16
25 20 0.30
26 3 0.04
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (24 bp):
ATTATTATTTATATTTCTAATACC
Found at i:76719926 original size:25 final size:24
Alignment explanation
Indices: 76719855--76719929 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 24
76719845 ATATCATGTA
*
76719855 TATATGATTTTTTTTCATATATTATG
1 TATAT-ATTTTTTTT-ACATATTATG
** * *
76719881 TATATATTTTTAATACTATATTGTT
1 TATATATTTTTTTTAC-ATATTATG
76719906 TATATATTTTTTCTTACATATTAT
1 TATATATTTTTT-TTACATATTAT
76719930 CTTACGTGTA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
24 1 0.03
25 30 0.77
26 8 0.21
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.61
Consensus pattern (24 bp):
TATATATTTTTTTTACATATTATG
Found at i:76720089 original size:27 final size:28
Alignment explanation
Indices: 76720044--76720096 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
76720034 TATTATTCCT
*
76720044 AATATATAAATTATGTATATATTTTTTA
1 AATATATAAATTATATATATATTTTTTA
*
76720072 AATAT-TATATTATATATATATTTTT
1 AATATATAAATTATATATATATTTTT
76720097 AATACCATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (28 bp):
AATATATAAATTATATATATATTTTTTA
Found at i:76720117 original size:27 final size:27
Alignment explanation
Indices: 76720053--76720118 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 27
76720043 TAATATATAA
**
76720053 ATTATGTATATATTTTTTAAATATTAT
1 ATTATGTATATATTTTTTAAATACCAT
*
76720080 ATTATATATATA-TTTTT-AATACCAT
1 ATTATGTATATATTTTTTAAATACCAT
*
76720105 ATTATGTACATATT
1 ATTATGTATATATT
76720119 ATTATATCTA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
25 16 0.48
26 6 0.18
27 11 0.33
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (27 bp):
ATTATGTATATATTTTTTAAATACCAT
Found at i:76720154 original size:12 final size:12
Alignment explanation
Indices: 76720139--76720254 Score: 55
Period size: 12 Copynumber: 9.3 Consensus size: 12
76720129 TTTTTACCCC
76720139 TATTATATTTAT
1 TATTATATTTAT
*
76720151 TATTA-ATATTAG
1 TATTATAT-TTAT
76720163 TATATATATATT-T
1 TAT-TATAT-TTAT
*
76720176 TATTATACGTGTA-
1 TATTATA--TTTAT
76720189 TATATATACTTT-T
1 TAT-TATA-TTTAT
76720202 TATATATAGTATTAT
1 TAT-TATA-T-TTAT
*
76720217 T-TT-TATATAT
1 TATTATATTTAT
*
76720227 CATTATATTTAT
1 TATTATATTTAT
*
76720239 TATTATACTTAT
1 TATTATATTTAT
76720251 TATT
1 TATT
76720255 TTCATTATTG
Statistics
Matches: 81, Mismatches: 11, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
10 3 0.04
11 5 0.06
12 37 0.46
13 21 0.26
14 13 0.16
15 2 0.02
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (12 bp):
TATTATATTTAT
Found at i:76720213 original size:24 final size:24
Alignment explanation
Indices: 76720150--76720213 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 24
76720140 ATTATATTTA
*
76720150 TTATTAATATTAGTATATATATATT
1 TTATT-ATATTAGTATATATATACT
*
76720175 TTATTATACGT-GTATATATATACT
1 TTATTATA-TTAGTATATATATACT
76720199 TT-TTATATATAGTAT
1 TTATTATAT-TAGTAT
76720214 TATTTTTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
23 6 0.18
24 21 0.64
25 6 0.18
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (24 bp):
TTATTATATTAGTATATATATACT
Found at i:76720221 original size:18 final size:18
Alignment explanation
Indices: 76720198--76720256 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 18
76720188 ATATATATAC
*
76720198 TTTTTATATATAGTATTA
1 TTTTTATATATATTATTA
76720216 TTTTTATATATCATTA-TA
1 TTTTTATATAT-ATTATTA
76720234 TTTATTAT-TATACTTATTA
1 TTT-TTATATATA-TTATTA
76720253 TTTT
1 TTTT
76720257 CATTATTGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
17 1 0.03
18 23 0.64
19 12 0.33
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTTATATATATTATTA
Found at i:76720243 original size:3 final size:3
Alignment explanation
Indices: 76720211--76720294 Score: 52
Period size: 3 Copynumber: 28.0 Consensus size: 3
76720201 TTATATATAG
* *
76720211 TAT TAT TTT TAT ATAT CAT TA- TATT TAT TAT TA- TACT TAT TAT T-T
1 TAT TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT
* *
76720256 TCAT TAT TGT TACT TAT TAT T-T TAT T-T TAA TAT TAT TAT
1 T-AT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
76720295 GCATTATTTG
Statistics
Matches: 63, Mismatches: 8, Indels: 20
0.69 0.09 0.22
Matches are distributed among these distances:
2 10 0.16
3 41 0.65
4 12 0.19
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:76721481 original size:9 final size:9
Alignment explanation
Indices: 76721467--76721525 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
76721457 ATAAGTATAA
76721467 AATTAACCG
1 AATTAACCG
76721476 AATTAACCG
1 AATTAACCG
*
76721485 AATTATCCG
1 AATTAACCG
* *
76721494 AATTACCCA
1 AATTAACCG
*
76721503 AATTAACTG
1 AATTAACCG
76721512 AATTAACCG
1 AATTAACCG
76721521 AATTA
1 AATTA
76721526 TTTGTATAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:76721567 original size:7 final size:6
Alignment explanation
Indices: 76721545--76721584 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
76721535 AATTATATGT
* *
76721545 TTTTTA TTTTTA TTTTTA GTTTTAA ATTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA TTT
76721585 ATTAAATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 24 0.83
7 5 0.17
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:76721574 original size:19 final size:20
Alignment explanation
Indices: 76721552--76721592 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
76721542 TGTTTTTTAT
76721552 TTTTATTTTTAGTT-TTAAA
1 TTTTATTTTTAGTTATTAAA
*
76721571 TTTTATTTTTATTTATTAAA
1 TTTTATTTTTAGTTATTAAA
76721591 TT
1 TT
76721593 ATTTATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTTATTTTTAGTTATTAAA
Found at i:76724084 original size:17 final size:16
Alignment explanation
Indices: 76724064--76724098 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
76724054 ATTAAATTCA
76724064 AATACTCATTAAAACTT
1 AATACT-ATTAAAACTT
*
76724081 AATACTTTTAAAACTT
1 AATACTATTAAAACTT
76724097 AA
1 AA
76724099 ATTGATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (16 bp):
AATACTATTAAAACTT
Found at i:76736722 original size:33 final size:33
Alignment explanation
Indices: 76736680--76736743 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
76736670 TTCTTCTTGA
**
76736680 CATTCCAGCTCCTGTTTAGCAACCAAACACTCC
1 CATTCCAGCTCCTGTCCAGCAACCAAACACTCC
76736713 CATTCCAGCTCCTGTCCAGCAACCAAACACT
1 CATTCCAGCTCCTGTCCAGCAACCAAACACT
76736744 TCCACTCAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.28, C:0.41, G:0.09, T:0.22
Consensus pattern (33 bp):
CATTCCAGCTCCTGTCCAGCAACCAAACACTCC
Found at i:76740932 original size:17 final size:18
Alignment explanation
Indices: 76740912--76740954 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
76740902 TTTTAAATCT
* *
76740912 TATAAAAATTTAAATAA-
1 TATAAAAATCTAAAAAAC
76740929 TATATAAAATCTAAAAAAC
1 TATA-AAAATCTAAAAAAC
76740948 TATAAAA
1 TATAAAA
76740955 TTATAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 4 0.18
18 14 0.64
19 4 0.18
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (18 bp):
TATAAAAATCTAAAAAAC
Found at i:76743599 original size:13 final size:13
Alignment explanation
Indices: 76743581--76743605 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76743571 TAAAAACTTT
76743581 TTAAATTATAAAA
1 TTAAATTATAAAA
76743594 TTAAATTATAAA
1 TTAAATTATAAA
76743606 TTTTTACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TTAAATTATAAAA
Found at i:76747047 original size:20 final size:20
Alignment explanation
Indices: 76747022--76747060 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
76747012 TAAATATATT
76747022 AAATTA-TTATATATAAATTC
1 AAATTAGTT-TATATAAATTC
*
76747042 AAATTAGTTTATTTAAATT
1 AAATTAGTTTATATAAATT
76747061 ATATAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (20 bp):
AAATTAGTTTATATAAATTC
Found at i:76748561 original size:18 final size:18
Alignment explanation
Indices: 76748515--76748563 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
76748505 TTAGTGATTC
76748515 AATATAAATATATATAATT
1 AATAT-AATATATATAATT
* *
76748534 AGTATTTAATATATATAGTT
1 A--ATATAATATATATAATT
76748554 AATATAATAT
1 AATATAATAT
76748564 TTTTTATAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 8 0.32
19 1 0.04
20 13 0.52
21 3 0.12
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (18 bp):
AATATAATATATATAATT
Found at i:76751528 original size:31 final size:32
Alignment explanation
Indices: 76751447--76751528 Score: 78
Period size: 31 Copynumber: 2.5 Consensus size: 32
76751437 GTCTCTAAAG
* *
76751447 TAATAATAAAATTAATAATAAAACAATGATTACA
1 TAATAATAAAA-TAATAACAAAACAA-GAATACA
* * *
76751481 TAATATTTAAACAATAACAACAACAA-AATA-A
1 TAATAATAAAATAATAACAA-AACAAGAATACA
76751512 TAATAATAAAATAATAA
1 TAATAATAAAATAATAA
76751529 AATGGTAGCA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
31 15 0.38
32 3 0.08
33 7 0.18
34 14 0.36
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.27
Consensus pattern (32 bp):
TAATAATAAAATAATAACAAAACAAGAATACA
Found at i:76753931 original size:2 final size:2
Alignment explanation
Indices: 76753924--76753950 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76753914 AATTTTGTAA
76753924 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
76753951 AAAGCAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76757026 original size:20 final size:20
Alignment explanation
Indices: 76756985--76757028 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
76756975 GTATTCTTAC
*
76756985 TTTTTCAATTATTTGTAACT
1 TTTTTCAATTATTTGCAACT
*
76757005 TTTTTCAATTATTTGCAGCT
1 TTTTTCAATTATTTGCAACT
76757025 TTTT
1 TTTT
76757029 GAAATTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.20, C:0.11, G:0.07, T:0.61
Consensus pattern (20 bp):
TTTTTCAATTATTTGCAACT
Found at i:76757034 original size:20 final size:20
Alignment explanation
Indices: 76756991--76757034 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
76756981 TTACTTTTTC
* **
76756991 AATTATTTGTAACTTTTTTC
1 AATTATTTGCAACTTTTTGA
*
76757011 AATTATTTGCAGCTTTTTGA
1 AATTATTTGCAACTTTTTGA
76757031 AATT
1 AATT
76757035 TAAACTATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.55
Consensus pattern (20 bp):
AATTATTTGCAACTTTTTGA
Found at i:76758631 original size:5 final size:5
Alignment explanation
Indices: 76758621--76758652 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
76758611 TTTACTGTGA
76758621 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
76758653 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:76758646 original size:9 final size:9
Alignment explanation
Indices: 76758622--76758652 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
76758612 TTACTGTGAA
76758622 AAATAAAAT
1 AAATAAAAT
76758631 AAAATAAAAT
1 -AAATAAAAT
76758641 AAATAAAAT
1 AAATAAAAT
76758650 AAA
1 AAA
76758653 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:76769322 original size:30 final size:31
Alignment explanation
Indices: 76769283--76769344 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
76769273 AGGTTAAACT
* *
76769283 ATAACAATAATCACTT-AACTTTGATAAAATA
1 ATAACAATAATCA-TTAAACTTTAAAAAAATA
76769314 ATAA-AATAATCATTAAACTTTAAAAAAATA
1 ATAACAATAATCATTAAACTTTAAAAAAATA
76769344 A
1 A
76769345 CAAATCAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 2 0.07
30 22 0.79
31 4 0.14
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.31
Consensus pattern (31 bp):
ATAACAATAATCATTAAACTTTAAAAAAATA
Found at i:76769455 original size:21 final size:21
Alignment explanation
Indices: 76769431--76769475 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
76769421 ACAAGTGACA
76769431 TGACTTATTAATTAGTTGATG
1 TGACTTATTAATTAGTTGATG
76769452 TGACTTATTAATTAGTTGATG
1 TGACTTATTAATTAGTTGATG
76769473 TGA
1 TGA
76769476 TTAGCTAGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.04, G:0.20, T:0.47
Consensus pattern (21 bp):
TGACTTATTAATTAGTTGATG
Found at i:76770786 original size:170 final size:171
Alignment explanation
Indices: 76770461--76770801 Score: 461
Period size: 170 Copynumber: 2.0 Consensus size: 171
76770451 AGAGAGTAAC
* *
76770461 AGTGGCTGAAAAATTTAAACTTTTGCATGTTCCCAAAATTGAAACAATTGCTAAGATGATTCTTC
1 AGTGGCTGAAAAATTTAAACTTTTGCATGTTCCCAAAACTGAAACAATTGATAAGATGATTCTTC
* * * ** *
76770526 TTCTATTGTCTGTAGCCCAACTAGGGTTCTTAAATTGGGGTTGTTTACACCATGGGATGACATGT
66 TTCTACTGTC-GCAACCCAACTAGGGTTCTTAAATTGGGGTCATTTACACCATGGGATGACAGGT
* * *
76770591 TAGCTTTCCGTTATAGACATAACGAAAAATGGTGAAAAGTTT
130 CAGCTTTCCGTTACAAACATAACGAAAAATGGTGAAAAGTTT
* * * * **
76770633 AGTGGCTGAAAAATTTGAACTTTTGCATGTTTCCAAAACTGAAACAATT-ATTAGTCTTCTTCTT
1 AGTGGCTGAAAAATTTAAACTTTTGCATGTTCCCAAAACTGAAACAATTGATAAG-ATGATTCTT
76770697 CTTCTACTGTC-CAACCCAACTAGGGTTCTTAAATTGGGGTCATTTACACCATGGGATGACAGGT
65 CTTCTACTGTCGCAACCCAACTAGGGTTCTTAAATTGGGGTCATTTACACCATGGGATGACAGGT
** * *
76770761 CAGCTTTTTGTTACAAACGTAACGAAGAATGGTGAAAAGTT
130 CAGCTTTCCGTTACAAACATAACGAAAAATGGTGAAAAGTT
76770802 CATTGGCTAA
Statistics
Matches: 147, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
170 82 0.56
171 3 0.02
172 62 0.42
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (171 bp):
AGTGGCTGAAAAATTTAAACTTTTGCATGTTCCCAAAACTGAAACAATTGATAAGATGATTCTTC
TTCTACTGTCGCAACCCAACTAGGGTTCTTAAATTGGGGTCATTTACACCATGGGATGACAGGTC
AGCTTTCCGTTACAAACATAACGAAAAATGGTGAAAAGTTT
Found at i:76771565 original size:3 final size:3
Alignment explanation
Indices: 76771557--76771599 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
76771547 AGATATTTAC
76771557 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
76771600 CAATTAATTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:76771786 original size:6 final size:6
Alignment explanation
Indices: 76771760--76771842 Score: 55
Period size: 6 Copynumber: 12.8 Consensus size: 6
76771750 AAGAATAAAT
*
76771760 AAAAGA AAGAA-A AACAAGA AAAAGA AACAGAGA AGAAACGA AATAGA
1 AAAAGA AA-AAGA AA-AAGA AAAAGA AA-A-AGA A-AAA-GA AAAAGA
76771807 AAGACAGA AAGAAGA AAAAG- AAAAG- AAAAGA AAAAG
1 AA-A-AGA AA-AAGA AAAAGA AAAAGA AAAAGA AAAAG
76771843 GAGAAATTAG
Statistics
Matches: 65, Mismatches: 3, Indels: 18
0.76 0.03 0.21
Matches are distributed among these distances:
5 10 0.15
6 25 0.38
7 14 0.22
8 15 0.23
9 1 0.02
ACGTcount: A:0.73, C:0.05, G:0.20, T:0.01
Consensus pattern (6 bp):
AAAAGA
Found at i:76771815 original size:22 final size:22
Alignment explanation
Indices: 76771756--76771841 Score: 61
Period size: 22 Copynumber: 3.9 Consensus size: 22
76771746 AATAAAGAAT
76771756 AAATA-AAAGAAAGAAAAACAAG
1 AAATAGAAAGAAAGAAAAAC-AG
* * *
76771778 AAAAAGAAACAGAGAAGAAAC-G
1 AAATAGAAAGAAAGAA-AAACAG
* *
76771800 AAATAGAAAGACAGAAAGA-AG
1 AAATAGAAAGAAAGAAAAACAG
*
76771821 AAAAAGAAAAGAAAAGAAAAA
1 AAATAG-AAAG-AAAGAAAAA
76771842 GGAGAAATTA
Statistics
Matches: 49, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
21 8 0.16
22 22 0.45
23 15 0.31
24 4 0.08
ACGTcount: A:0.74, C:0.05, G:0.19, T:0.02
Consensus pattern (22 bp):
AAATAGAAAGAAAGAAAAACAG
Found at i:76771822 original size:37 final size:37
Alignment explanation
Indices: 76771760--76771839 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 37
76771750 AAGAATAAAT
* *
76771760 AAAAG-AA-AGAAAAACAAGAAAAAGAAACAGAGAAG
1 AAAAGAAATAGAAAAACAAGAAAAAGAAAAAGAAAAG
* *
76771795 AAACGAAATAGAAAGAC-AGAAAGAAGAAAAAGAAAAG
1 AAAAGAAATAGAAAAACAAGAAA-AAGAAAAAGAAAAG
76771832 AAAAGAAA
1 AAAAGAAA
76771840 AAGGAGAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
35 4 0.11
36 7 0.19
37 26 0.70
ACGTcount: A:0.74, C:0.05, G:0.20, T:0.01
Consensus pattern (37 bp):
AAAAGAAATAGAAAAACAAGAAAAAGAAAAAGAAAAG
Found at i:76771832 original size:5 final size:5
Alignment explanation
Indices: 76771760--76771840 Score: 51
Period size: 5 Copynumber: 15.8 Consensus size: 5
76771750 AAGAATAAAT
* * *
76771760 AAAAG -AAAG AAAA- ACAAG AAAAAG AAACAG AGAAG AAACG AAATAG
1 AAAAG AAAAG AAAAG AAAAG -AAAAG AAA-AG AAAAG AAAAG AAA-AG
* *
76771806 AAAGAC AGAAAG AAGA- AAAAG AAAAG AAAAG AAAA
1 AAA-AG A-AAAG AAAAG AAAAG AAAAG AAAAG AAAA
76771841 AGGAGAAATT
Statistics
Matches: 58, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
4 10 0.17
5 30 0.52
6 16 0.28
7 2 0.03
ACGTcount: A:0.74, C:0.05, G:0.20, T:0.01
Consensus pattern (5 bp):
AAAAG
Found at i:76775054 original size:75 final size:75
Alignment explanation
Indices: 76774935--76775106 Score: 205
Period size: 75 Copynumber: 2.4 Consensus size: 75
76774925 CATGGCAAAG
** *
76774935 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
76774994 CCATACTGAGC
65 CCATACCGAGC
76775005 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
76775070 CATACCGAGT
66 CATACCGAGC
***
76775080 TAAAAAAATGTAGGTATGGTATT-TCAA
1 T-GTGAAATGTAGGTATGGTATTATCAA
76775107 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 1 0.01
75 46 0.53
76 18 0.21
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:76775073 original size:35 final size:35
Alignment explanation
Indices: 76774938--76775104 Score: 167
Period size: 35 Copynumber: 4.6 Consensus size: 35
76774928 GGCAAAGTGT
* **
76774938 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
76774973 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
76775008 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
76775048 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
*
76775084 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
76775105 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
35 64 0.55
36 21 0.18
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:76775096 original size:36 final size:35
Alignment explanation
Indices: 76775034--76775104 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
76775024 ATTATCAAAT
* *
76775034 CCATACTGAGTTAAGAAATGTAGGTATGGCATTTC
1 CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
*
76775069 CCATACCGAGTTAAAAAAATGTAGGTATGGTATTTC
1 CCATACCGAGTT-AAAAAATGTAGGTATGGCATTTC
76775105 AATGAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.34
36 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (35 bp):
CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
Found at i:76782538 original size:75 final size:75
Alignment explanation
Indices: 76782419--76782589 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
76782409 CATGGCAAAG
** *
76782419 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
76782478 CCATACTGAGC
65 CCATACCGAGC
76782489 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
76782554 CATACCGAGT
66 CATACCGAGC
***
76782564 TAAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
76782590 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 60 0.69
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:76782557 original size:35 final size:35
Alignment explanation
Indices: 76782422--76782587 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
76782412 GGCAAAGTGT
* **
76782422 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
76782457 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
76782492 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
76782532 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
*
76782567 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
76782588 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
35 85 0.73
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:76796829 original size:28 final size:28
Alignment explanation
Indices: 76796792--76796856 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
76796782 TAAAGTTAAT
* *
76796792 TAAATTAAATTATTTAATTTTTATT-AAA
1 TAAAATAAATAATTTAATTTTT-TTAAAA
* *
76796820 TCAAATAAATAATTTTATTTTTTTAAAA
1 TAAAATAAATAATTTAATTTTTTTAAAA
76796848 TAAAATAAA
1 TAAAATAAA
76796857 ATTAAATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 2 0.06
28 29 0.94
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (28 bp):
TAAAATAAATAATTTAATTTTTTTAAAA
Found at i:76806836 original size:31 final size:30
Alignment explanation
Indices: 76806801--76806858 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 30
76806791 AAATTTAAAT
* *
76806801 TTTTATATTTTTATTTTTAAGAATTTAGTTA
1 TTTTATATTTTAAATTTTAA-AATTTAGTTA
76806832 TTTTATATTTTAAATTTTAAAATTTAG
1 TTTTATATTTTAAATTTTAAAATTTAG
76806859 GTTTAATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 7 0.28
31 18 0.72
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (30 bp):
TTTTATATTTTAAATTTTAAAATTTAGTTA
Found at i:76806914 original size:19 final size:19
Alignment explanation
Indices: 76806876--76806913 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
76806866 TAGTAATGTT
*
76806876 ATTATTATTTTTTATTAAA
1 ATTATTATTTTTAATTAAA
76806895 ATTATT-TTTTTAATTAAA
1 ATTATTATTTTTAATTAAA
76806913 A
1 A
76806914 AATTAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTATTATTTTTAATTAAA
Found at i:76806955 original size:23 final size:23
Alignment explanation
Indices: 76806906--76806955 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
76806896 TTATTTTTTT
*
76806906 AATTAAAAAATTAAATTTGATAG
1 AATTAAAAAATTAAATTTAATAG
76806929 AATTAAAAAA-TAACATTATAATA-
1 AATTAAAAAATTAA-ATT-TAATAG
76806952 AATT
1 AATT
76806956 TAAATTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 3 0.12
23 17 0.71
24 4 0.17
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (23 bp):
AATTAAAAAATTAAATTTAATAG
Found at i:76819393 original size:2 final size:2
Alignment explanation
Indices: 76819375--76819413 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
76819365 ACATTATTAT
* *
76819375 TA TA TG TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
76819414 TGGTATTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:76820440 original size:124 final size:126
Alignment explanation
Indices: 76820290--76820596 Score: 374
Period size: 124 Copynumber: 2.5 Consensus size: 126
76820280 AAACGAAGGT
* * *
76820290 AATGTTTGATGTTTGAAAATT-TGGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTC-CTGTTT
1 AATGTTTGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCTC-GCTT
* * * *
76820353 ATTCAAAATAATCGAGCATTCCTTTAGAATTT-TAC-T-TTTTTTAAAATTCTAAAACAATAC
65 ATCCAAAATAATCAAACATTCCTTTAGAATTTATACGTATTTTTT-AAATTCTAAAACAAGAC
* * *
76820413 AATGTTTGATGCTTGGAAATTCGGGGAACCGTGCCCTATCGTGCTGGGTTTCGATTTCTCGCTTA
1 AATGTTTGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCTCGCTTA
* * **
76820478 TCCAAAATCATCAAACATTCCTTTAGAATTTCATTCGTATTTTTTAAATTCTAAAACAAGGG
66 TCCAAAATAATCAAACATTCCTTTAGAATTT-ATACGTATTTTTTAAATTCTAAAACAAGAC
* * * *
76820540 GATGTTCT-ATGTTTGGGAATTCGAGAAATCGTGCCCTACCGTGCTGGGTTTCGATTT
1 AATGTT-TGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGGGTTTCGATTT
76820597 TTCGTTGGAC
Statistics
Matches: 156, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
123 19 0.12
124 64 0.41
125 1 0.01
126 2 0.01
127 63 0.40
128 7 0.04
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (126 bp):
AATGTTTGATGTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCTCGCTTA
TCCAAAATAATCAAACATTCCTTTAGAATTTATACGTATTTTTTAAATTCTAAAACAAGAC
Found at i:76820583 original size:127 final size:124
Alignment explanation
Indices: 76820290--76820596 Score: 352
Period size: 127 Copynumber: 2.5 Consensus size: 124
76820280 AAACGAAGGT
* * * * *
76820290 AATGTTTGATGTTTGAAAATTTG-GGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCCTGTTTA
1 AATGTTTGATGCTTGGAAATTCGAGAAATCGTGCCCTACCGTGCTGGGTTTCGATTTCCTGCTTA
* * * *
76820354 TTCAAAATAATCGAGCATTCCTTTAGAATTTTACTTTTTTTAAAATTCTAAAACAATAC
66 TCCAAAATAATCAAACATTCCTTTAGAATTTTACTTTTTTTAAAATTCTAAAACAAGAC
* * * *
76820413 AATGTTTGATGCTTGGAAATTCGGGGAACCGTGCCCTATCGTGCTGGGTTTCGATTT-CTCGCTT
1 AATGTTTGATGCTTGGAAATTCGAGAAATCGTGCCCTACCGTGCTGGGTTTCGATTTCCT-GCTT
* * **
76820477 ATCCAAAATCATCAAACATTCCTTTAGAATTTCATTCGTATTTTTT-AAATTCTAAAACAAGGG
65 ATCCAAAATAATCAAACATTCCTTTAGAATTT--TAC-T-TTTTTTAAAATTCTAAAACAAGAC
* * *
76820540 GATGTTCT-ATGTTTGGGAATTCGAGAAATCGTGCCCTACCGTGCTGGGTTTCGATTT
1 AATGTT-TGATGCTTGGAAATTCGAGAAATCGTGCCCTACCGTGCTGGGTTTCGATTT
76820597 TTCGTTGGAC
Statistics
Matches: 156, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
123 22 0.14
124 62 0.40
126 2 0.01
127 63 0.40
128 7 0.04
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (124 bp):
AATGTTTGATGCTTGGAAATTCGAGAAATCGTGCCCTACCGTGCTGGGTTTCGATTTCCTGCTTA
TCCAAAATAATCAAACATTCCTTTAGAATTTTACTTTTTTTAAAATTCTAAAACAAGAC
Found at i:76822653 original size:15 final size:14
Alignment explanation
Indices: 76822621--76822649 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
76822611 TCACTAGAGC
76822621 TTAAGTTTTATATT
1 TTAAGTTTTATATT
76822635 TTAA-TTTTATATT
1 TTAAGTTTTATATT
76822648 TT
1 TT
76822650 TTAAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (14 bp):
TTAAGTTTTATATT
Found at i:76827379 original size:18 final size:18
Alignment explanation
Indices: 76827356--76827392 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
76827346 ATTTAATATT
* *
76827356 TCTTATTTGGGTCTGTTA
1 TCTTATTCGGATCTGTTA
76827374 TCTTATTCGGATCTGTTA
1 TCTTATTCGGATCTGTTA
76827392 T
1 T
76827393 TAAATCCGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.14, G:0.19, T:0.54
Consensus pattern (18 bp):
TCTTATTCGGATCTGTTA
Found at i:76829938 original size:2 final size:2
Alignment explanation
Indices: 76829931--76829961 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
76829921 TGTACGTAAA
*
76829931 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
76829962 AATAGTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:76830020 original size:25 final size:23
Alignment explanation
Indices: 76829968--76830022 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
76829958 TATAAATAGT
76829968 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
76829991 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
76830016 AATAGTG
1 AATAGTG
76830023 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:76830242 original size:25 final size:23
Alignment explanation
Indices: 76830198--76830244 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
76830188 TATGAAAATA
76830198 ATACTATATATAAAAGTATGTAT
1 ATACTATATATAAAAGTATGTAT
76830221 ATACTCATATAATAAATA-TATGTA
1 ATACT-ATAT-ATAAA-AGTATGTA
76830245 CTAGTATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 5 0.24
24 4 0.19
25 11 0.52
26 1 0.05
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.38
Consensus pattern (23 bp):
ATACTATATATAAAAGTATGTAT
Found at i:76830457 original size:18 final size:20
Alignment explanation
Indices: 76830417--76830456 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
76830407 TATGTAACTA
76830417 ATAACAT-TAAAATATATAT
1 ATAACATATAAAATATATAT
*
76830436 ATAACATATAAAATAAATAT
1 ATAACATATAAAATATATAT
76830456 A
1 A
76830457 ATATATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACATATAAAATATATAT
Found at i:76830462 original size:18 final size:18
Alignment explanation
Indices: 76830424--76830486 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
76830414 CTAATAACAT
*
76830424 TAAAATATATATATAACATA
1 TAAAATA-A-ATATAATATA
76830444 TAAAATAAATATAATATA
1 TAAAATAAATATAATATA
** *
76830462 TATTAGAAATGATAATAATA
1 TAAAATAAAT-ATAAT-ATA
76830482 TAAAA
1 TAAAA
76830487 ACTATTCATA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 16 0.46
19 6 0.17
20 13 0.37
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (18 bp):
TAAAATAAATATAATATA
Found at i:76830686 original size:30 final size:30
Alignment explanation
Indices: 76830633--76830707 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
76830623 TTGAAAACAT
*
76830633 ATATACATAATATATACGAAAAATATATAG
1 ATATACATAATATATACGAAAAATATATAC
** *
76830663 ATATACATAATATAATA-TTAAAATATTTAC
1 ATATACATAATAT-ATACGAAAAATATATAC
76830693 ATAATACATAA-ATAT
1 AT-ATACATAATATAT
76830708 TAGGGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 2 0.05
30 26 0.67
31 11 0.28
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.35
Consensus pattern (30 bp):
ATATACATAATATATACGAAAAATATATAC
Found at i:76830783 original size:23 final size:23
Alignment explanation
Indices: 76830745--76830789 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
76830735 CTACATAAGT
*
76830745 ATATACATAAAGATATTAAAAAC
1 ATATACATAAAGATATAAAAAAC
* *
76830768 ATATACATATATATATAAAAAA
1 ATATACATAAAGATATAAAAAA
76830790 TAAAAAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (23 bp):
ATATACATAAAGATATAAAAAAC
Found at i:76830854 original size:24 final size:24
Alignment explanation
Indices: 76830827--76830882 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
76830817 TCATGATAAT
*
76830827 AATAATATTAAA-ATATAAAAAGTA
1 AATAATAATAAAGATATAAAAA-TA
*
76830851 AAT-ATAATAAAGATATTAAAATA
1 AATAATAATAAAGATATAAAAATA
76830874 AAGTAATAA
1 AA-TAATAA
76830883 ATTAACAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 11 0.41
24 12 0.44
25 4 0.15
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (24 bp):
AATAATAATAAAGATATAAAAATA
Found at i:76832954 original size:84 final size:84
Alignment explanation
Indices: 76832662--76833360 Score: 449
Period size: 89 Copynumber: 8.4 Consensus size: 84
76832652 ACGTGAGCAA
* * * * **
76832662 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAATAGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTG---AACAGAAATT
* * * * *
76832726 AAAAATATCTCGACATGTGACCCG
63 GAAAATACCTC-A-ACGTGTCCTG
* * * **
76832750 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGCATAAATTTAAAAAAACATTAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAA-TT----GAACAGAAA
* * * *
76832815 TTGAAAATATCTCAGCGTGCCCCG
61 TTGAAAATACCTCAACGTGTCCTG
76832839 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAA
* *
76832904 AATACCTCAACGTGTCTTA
66 AATACCTCAACGTGTCCTG
** * *
76832923 AGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTG--AAACAAAAATT-AAC---AA-TG--
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAA
* * *
76832979 ----CCTTAGCGTGTCCCG
66 AATACCTCAACGTGTCCTG
* * * **
76832994 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAGCATAAATTAAAAAACATTAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACATAAATT---GAACAGAAA
* **
76833059 TTGAAAATACCTCGGCATATGATCCTG
61 TTGAAAATACCTC--AACGTG-TCCTG
* * * *
76833086 AGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAAACATAAATTGAAAAACTGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTG---AACAGAAATT
* * *
76833151 GTAAATACCTCGACATGTGACCTG
63 GAAAATACCTC-A-ACGTGTCCTG
* * **
76833175 ACGTTCAACTCACCTCTCGCAATATGAGTTGATTTTT--------TTGA-TGAACAGAAATT-AA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAA
*
76833230 AACTACCTCAGCGTGTCCTG
66 AA-TACCTCAACGTGTCCTG
* * ***
76833250 AGGTTCAACTCACCTCTCGCAGTATGAGTTGATTTTT-TTGAA-A-AAA-T----AG--ATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAA
*
76833305 AATACCTCAACGTGTCTTG
66 AATACCTCAACGTGTCCTG
76833324 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
76833361 TTGAAACAGA
Statistics
Matches: 492, Mismatches: 80, Indels: 92
0.74 0.12 0.14
Matches are distributed among these distances:
71 39 0.08
73 5 0.01
74 53 0.11
75 55 0.11
76 6 0.01
77 17 0.03
78 2 0.00
79 3 0.01
80 4 0.01
81 5 0.01
82 12 0.02
83 2 0.00
84 59 0.12
88 38 0.08
89 101 0.21
90 42 0.09
91 17 0.03
92 32 0.07
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (84 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAA
AATACCTCAACGTGTCCTG
Done.