Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 273 of 292
Found at i:78365491 original size:8 final size:8
Alignment explanation
Indices: 78365480--78365528 Score: 55
Period size: 8 Copynumber: 6.0 Consensus size: 8
78365470 TTTTTTAGAA
78365480 TTTTTTTG
1 TTTTTTTG
78365488 TTTTTTTG
1 TTTTTTTG
78365496 TGTTTTTGTG
1 T-TTTTT-TG
* *
78365506 TTGTTGTG
1 TTTTTTTG
78365514 TTTTTTT-
1 TTTTTTTG
78365521 TTTTTTTG
1 TTTTTTTG
78365529 CCTTTGCCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
7 7 0.21
8 16 0.47
9 8 0.24
10 3 0.09
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (8 bp):
TTTTTTTG
Found at i:78365501 original size:16 final size:16
Alignment explanation
Indices: 78365482--78365525 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
78365472 TTTTAGAATT
78365482 TTTTTGTTTTTTTGTG
1 TTTTTGTTTTTTTGTG
* *
78365498 TTTTTGTGTTGTTGTG
1 TTTTTGTTTTTTTGTG
78365514 TTTTT-TTTTTTT
1 TTTTTGTTTTTTT
78365526 TTGCCTTTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 5 0.21
16 19 0.79
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (16 bp):
TTTTTGTTTTTTTGTG
Found at i:78368457 original size:66 final size:65
Alignment explanation
Indices: 78368353--78368478 Score: 200
Period size: 66 Copynumber: 1.9 Consensus size: 65
78368343 ATCTATTTTA
*
78368353 TGTCAAATGTTAGGATATATGATCGAAATGAATCAAATGCTCCTAACTAGA-TGTGTTATGAATG
1 TGTCAAATATTAGGATATATGATCGAAATGAATCAAATGCTCCTAACTAGATTGTGTTATGAATG
* *
78368417 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATTGTGTTAT
1 TGTCAAAT-ATTAGGAT-ATATGATCGAAATGAATCAAATGCTCCTAACTAGATTGTGTTAT
78368479 TATATGAATG
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
64 8 0.14
65 7 0.12
66 33 0.59
67 8 0.14
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (65 bp):
TGTCAAATATTAGGATATATGATCGAAATGAATCAAATGCTCCTAACTAGATTGTGTTATGAATG
Found at i:78369637 original size:15 final size:14
Alignment explanation
Indices: 78369619--78369659 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
78369609 TTTAGAATTT
78369619 TTTTGTTTTTTTGTG
1 TTTT-TTTTTTTGTG
*
78369634 TTTTTGTGTTTTGTG
1 TTTTT-TTTTTTGTG
78369649 TTTTTTTTTTT
1 TTTTTTTTTTT
78369660 TTTTTGCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (14 bp):
TTTTTTTTTTTGTG
Found at i:78369664 original size:8 final size:8
Alignment explanation
Indices: 78369616--78369662 Score: 60
Period size: 8 Copynumber: 5.9 Consensus size: 8
78369606 TTTTTTAGAA
78369616 TTTTTTTG
1 TTTTTTTG
78369624 TTTTTTTG
1 TTTTTTTG
*
78369632 TGTTTTTG
1 TTTTTTTG
*
78369640 TGTTTTGTG
1 T-TTTTTTG
78369649 TTTTTTT-
1 TTTTTTTG
78369656 TTTTTTT
1 TTTTTTT
78369663 TTGCCTTTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
7 7 0.21
8 21 0.62
9 6 0.18
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (8 bp):
TTTTTTTG
Found at i:78372473 original size:19 final size:20
Alignment explanation
Indices: 78372449--78372495 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
78372439 AGTGAAAGTT
78372449 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
78372468 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
78372488 -AATGCAAA
1 TAATGCAAA
78372496 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:78374937 original size:2 final size:2
Alignment explanation
Indices: 78374930--78374963 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
78374920 ACAATAATAC
* *
78374930 TA TA TA TA AA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
78374964 ATAGAAATAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:78375079 original size:12 final size:12
Alignment explanation
Indices: 78375057--78375099 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
78375047 AATAAAAAAC
78375057 AATACTATATATA
1 AATA-TATATATA
78375070 AATATATATATA
1 AATATATATATA
* * *
78375082 TATATACATAAA
1 AATATATATATA
78375094 AATATA
1 AATATA
78375100 CACTAATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
12 22 0.85
13 4 0.15
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (12 bp):
AATATATATATA
Found at i:78375336 original size:3 final size:3
Alignment explanation
Indices: 78375323--78375408 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
78375313 GAGGGCATAT
78375323 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
78375367 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
78375409 AACAAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 9 0.13
3 48 0.71
4 9 0.13
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:78375347 original size:12 final size:12
Alignment explanation
Indices: 78375323--78375405 Score: 73
Period size: 12 Copynumber: 6.8 Consensus size: 12
78375313 GAGGGCATAT
78375323 ATAATAT-AATA
1 ATAATATAAATA
78375334 ATAATATAAATA
1 ATAATATAAATA
78375346 ATAATATATACATGA
1 ATAATATA-A-AT-A
78375361 GA-AATA-ATAATA
1 -ATAATATA-AATA
78375373 ATAATATAAATA
1 ATAATATAAATA
* *
78375385 ATAGTAAAAATA
1 ATAATATAAATA
*
78375397 ATAAAATAA
1 ATAATATAA
78375406 TAAAACAAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
11 8 0.13
12 37 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:78375367 original size:21 final size:18
Alignment explanation
Indices: 78375328--78375408 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
78375318 CATATATAAT
*
78375328 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
78375346 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
78375367 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* *
78375385 ATAGTAAAAATA-ATAA-A
1 ATAATAATAATAGA-AATA
78375402 ATAATAA
1 ATAATAA
78375409 AACAAAGCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
17 8 0.15
18 24 0.44
19 5 0.09
20 5 0.09
21 12 0.22
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:78375396 original size:27 final size:27
Alignment explanation
Indices: 78375323--78375409 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
78375313 GAGGGCATAT
* *
78375323 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
78375349 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
78375373 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
78375400 A-AATAATAAA
1 ATAAT-ATAAA
78375410 ACAAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 7 0.15
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:78375780 original size:22 final size:22
Alignment explanation
Indices: 78375739--78375817 Score: 76
Period size: 21 Copynumber: 3.6 Consensus size: 22
78375729 ATTCTTTCCA
78375739 AAAAAACAAAAAAA--TACCTCC
1 AAAAAACAAAAAAACCT-CCTCC
78375760 AAAAAACAAAAAAACCTCCTCC
1 AAAAAACAAAAAAACCTCCTCC
*
78375782 --AAAACAAAGAACAATCCTTCTCC
1 AAAAAACAAA-AA-AA-CCTCCTCC
*
78375805 AAAAAACCAAAAA
1 AAAAAACAAAAAA
78375818 CCCACCCCGT
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
20 8 0.16
21 16 0.33
22 7 0.14
23 9 0.18
24 2 0.04
25 7 0.14
ACGTcount: A:0.62, C:0.27, G:0.01, T:0.10
Consensus pattern (22 bp):
AAAAAACAAAAAAACCTCCTCC
Found at i:78375974 original size:4 final size:4
Alignment explanation
Indices: 78375965--78375991 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
78375955 GGCCAAGATT
78375965 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
78375992 TTTGTGTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:78390801 original size:17 final size:16
Alignment explanation
Indices: 78390779--78390828 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 16
78390769 ATATTTTACT
78390779 ATAAAAATAATTAAAAA
1 ATAAAAA-AATTAAAAA
78390796 ATAAAAAAATTATAAAA
1 ATAAAAAAATTA-AAAA
78390813 ATAGAAAAAA-TAAAAA
1 ATA-AAAAAATTAAAAA
78390829 TATTAAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
16 9 0.29
17 16 0.52
18 6 0.19
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (16 bp):
ATAAAAAAATTAAAAA
Found at i:78390894 original size:17 final size:17
Alignment explanation
Indices: 78390787--78390917 Score: 90
Period size: 17 Copynumber: 7.6 Consensus size: 17
78390777 CTATAAAAAT
*
78390787 AATTA-AAAAATAAAAA
1 AATTATAAAAATATAAA
*
78390803 AATTATAAAAATAGAAA
1 AATTATAAAAATATAAA
78390820 AA--ATAAAAATATTAAA
1 AATTATAAAAATA-TAAA
* *** *
78390836 TATTA-AATTTTATTAA
1 AATTATAAAAATATAAA
* *
78390852 AATTATAAAAACTTGTCAA
1 AATTATAAAAA--TATAAA
*
78390871 TATTATAAAAATATAAA
1 AATTATAAAAATATAAA
78390888 AATTATAATAAATTATAAA
1 AATTATAA-AAA-TATAAA
78390907 AATTTATAAAA
1 AA-TTATAAAA
78390918 CTTATTTAAA
Statistics
Matches: 88, Mismatches: 17, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
15 9 0.10
16 16 0.18
17 29 0.33
18 4 0.05
19 24 0.27
20 6 0.07
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (17 bp):
AATTATAAAAATATAAA
Found at i:78390902 original size:10 final size:9
Alignment explanation
Indices: 78390778--78390922 Score: 88
Period size: 9 Copynumber: 16.3 Consensus size: 9
78390768 AATATTTTAC
78390778 TATAAAAAT
1 TATAAAAAT
* *
78390787 AATTAAAAAA
1 TA-TAAAAAT
*
78390797 TAAAAAAAT
1 TATAAAAAT
78390806 TATAAAAA-
1 TATAAAAAT
*
78390814 TAGAAAAA-
1 TATAAAAAT
78390822 -ATAAAAA-
1 TATAAAAAT
*
78390829 TAT-TAAA-
1 TATAAAAAT
**
78390836 TATTAAATTT
1 TA-TAAAAAT
*
78390846 TATTAAAAT
1 TATAAAAAT
78390855 TATAAAAACT
1 TATAAAAA-T
* * *
78390865 TGTCAATAT
1 TATAAAAAT
78390874 TATAAAAA-
1 TATAAAAAT
78390882 TATAAAAAT
1 TATAAAAAT
78390891 TATAATAAAT
1 TATAA-AAAT
78390901 TATAAAAATT
1 TATAAAAA-T
*
78390911 TATAAAACT
1 TATAAAAAT
78390920 TAT
1 TAT
78390923 TTAAAATATT
Statistics
Matches: 104, Mismatches: 23, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
7 11 0.11
8 18 0.17
9 43 0.41
10 32 0.31
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.34
Consensus pattern (9 bp):
TATAAAAAT
Found at i:78390906 original size:19 final size:18
Alignment explanation
Indices: 78390778--78390922 Score: 88
Period size: 19 Copynumber: 8.2 Consensus size: 18
78390768 AATATTTTAC
* *
78390778 TATAAAAATAATTAAAAAA
1 TATAAAAATTA-TAAAAAT
*
78390797 TAAAAAAATTATAAAAA-
1 TATAAAAATTATAAAAAT
*
78390814 TAGAAAAA--ATAAAAA-
1 TATAAAAATTATAAAAAT
* **
78390829 TAT-TAAA-TATTAAATTT
1 TATAAAAATTA-TAAAAAT
*
78390846 TATTAAAATTATAAAAACT
1 TATAAAAATTATAAAAA-T
* * *
78390865 TGTCAATATTATAAAAA-
1 TATAAAAATTATAAAAAT
78390882 TATAAAAATTATAATAAAT
1 TATAAAAATTATAA-AAAT
*
78390901 TATAAAAATTTATAAAACT
1 TATAAAAA-TTATAAAAAT
78390920 TAT
1 TAT
78390923 TTAAAATATT
Statistics
Matches: 100, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
14 3 0.03
15 10 0.10
16 4 0.04
17 21 0.21
18 16 0.16
19 40 0.40
20 6 0.06
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.34
Consensus pattern (18 bp):
TATAAAAATTATAAAAAT
Found at i:78390943 original size:15 final size:15
Alignment explanation
Indices: 78390923--78390952 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
78390913 TAAAACTTAT
78390923 TTAAAATATTTTAGA
1 TTAAAATATTTTAGA
*
78390938 TTAAAATTTTTTAGA
1 TTAAAATATTTTAGA
78390953 ATTCTTTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (15 bp):
TTAAAATATTTTAGA
Found at i:78390960 original size:10 final size:10
Alignment explanation
Indices: 78390938--78390973 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
78390928 ATATTTTAGA
78390938 TTAAAATTTT
1 TTAAAATTTT
* *
78390948 TTAGAATTCT
1 TTAAAATTTT
78390958 TTAAAATTTT
1 TTAAAATTTT
78390968 TTAAAA
1 TTAAAA
78390974 ATTGTACAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (10 bp):
TTAAAATTTT
Found at i:78391452 original size:19 final size:19
Alignment explanation
Indices: 78391428--78391485 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
78391418 CATTCCAATT
*
78391428 TAAGTTTTTATTATTTTTA
1 TAAGTTTTTATAATTTTTA
*
78391447 TAAGTTTATATCAA-TTTTA
1 TAAGTTTTTAT-AATTTTTA
* *
78391466 -ATGCTTTTATAATTTTTA
1 TAAGTTTTTATAATTTTTA
78391484 TA
1 TA
78391486 GAATTTTAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
17 2 0.06
18 12 0.39
19 16 0.52
20 1 0.03
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
TAAGTTTTTATAATTTTTA
Found at i:78391473 original size:28 final size:28
Alignment explanation
Indices: 78391442--78391495 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
78391432 TTTTTATTAT
78391442 TTTTATAAGTTTATAT-CAATTTTAATGC
1 TTTTATAA-TTTATATACAATTTTAATGC
* *
78391470 TTTTATAATTTTTATAGAATTTTAAT
1 TTTTATAATTTATATACAATTTTAAT
78391496 ACGTTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 6 0.26
28 17 0.74
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (28 bp):
TTTTATAATTTATATACAATTTTAATGC
Found at i:78398258 original size:131 final size:129
Alignment explanation
Indices: 78398009--78398338 Score: 398
Period size: 131 Copynumber: 2.6 Consensus size: 129
78397999 AAACCGAAAC
* * * * * *
78398009 CCAGCAC-AGTAGGGCACGATTCCTCAAATTTCTAAACATCGAGCATTGCC-TCATTTT-AGAAT
1 CCAGCACGA-TAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAGAAT
** * * * * *
78398071 TTAGAAAACATTAGTGAAATTCTAGAGGGATATTCGATTATTTTGAATAAAAGGGAAATTGCAAA
65 TTTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAATAAAAGGGAAATCGCAAA
*
78398136 CCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAAT
1 CCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCGTTTT-AAGAAT
*
78398201 TTTTAAAGACATGAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAA-AAAAGGGGAAATCGCA
65 TTTTAAA-ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAATAAAA-GGGAAATCGCA
*
78398265 AC
128 AA
* * * * *
78398267 CCAGCATGATGGGGCACGATTCTCTGAATTGCCAAACATCGAACATTGCCTTTGTTTTTAAGAAT
1 CCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCG-TTTTAAGAAT
78398332 TTTTAAA
65 TTTTAAA
78398339 TGAATAATTA
Statistics
Matches: 174, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
127 42 0.24
128 7 0.04
130 14 0.08
131 107 0.61
132 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (129 bp):
CCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAGAATT
TTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAATAAAAGGGAAATCGCAAA
Found at i:78402529 original size:45 final size:45
Alignment explanation
Indices: 78402465--78402581 Score: 173
Period size: 45 Copynumber: 2.6 Consensus size: 45
78402455 GTTGTACAGT
* **
78402465 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
* *
78402510 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
*
78402555 ATTTTTCGGGCC-TCGAGCCTAGCAGGC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGC
78402582 AAAATACCGG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
44 14 0.21
45 52 0.79
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
Found at i:78405322 original size:44 final size:45
Alignment explanation
Indices: 78405234--78405322 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
78405224 AGAACAGAAA
*
78405234 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
*
78405280 TGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGA
78405323 AGAATTCATG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 20 0.49
46 21 0.51
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:78405333 original size:44 final size:45
Alignment explanation
Indices: 78405235--78405360 Score: 139
Period size: 44 Copynumber: 2.8 Consensus size: 45
78405225 GAACAGAAAT
* *
78405235 GAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATT
1 GAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGATA
*
78405281 GAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA-A
1 GAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGATA
** * * *
78405324 GAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 G-AGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
78405361 CAGGATATTG
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
43 1 0.01
44 35 0.51
45 1 0.01
46 31 0.46
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (45 bp):
GAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGATA
Found at i:78410795 original size:44 final size:45
Alignment explanation
Indices: 78410707--78410795 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
78410697 AGAATAGAAA
*
78410707 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
*
78410753 TGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGA
78410796 AGAATTCATG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 20 0.49
46 21 0.51
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:78410806 original size:44 final size:45
Alignment explanation
Indices: 78410708--78410833 Score: 139
Period size: 44 Copynumber: 2.8 Consensus size: 45
78410698 GAATAGAAAT
* *
78410708 GAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATT
1 GAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGATA
*
78410754 GAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA-A
1 GAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGATA
** * * *
78410797 GAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 G-AGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
78410834 CAGGATATTG
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
43 1 0.01
44 35 0.51
45 1 0.01
46 31 0.46
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (45 bp):
GAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGATA
Found at i:78414889 original size:93 final size:93
Alignment explanation
Indices: 78414777--78414948 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
78414767 GCCCATAAGT
* *
78414777 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
78414842 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
78414870 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
78414935 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
78414949 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:78414944 original size:46 final size:46
Alignment explanation
Indices: 78414769--78414944 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
78414759 TGTAACCCGC
* * *
78414769 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
78414815 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
78414865 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
78414908 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
78414945 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:78419531 original size:45 final size:45
Alignment explanation
Indices: 78419467--78419581 Score: 151
Period size: 45 Copynumber: 2.6 Consensus size: 45
78419457 GTTGTACAGT
* **
78419467 ATTATTCGGGCCTTGGAGCCTAGCAGCCTATAATGCTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGCCTATAATGCCAGTGAGAC
* * * *
78419512 ATTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCAGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGCCTATAATGCCAGTGAGAC
*
78419557 ATTTTTCGGGCC-TCGAGCCTAGCAG
1 ATTATTCGGGCCTTCGAGCCTAGCAG
78419582 GCAAAATGCC
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
44 11 0.18
45 50 0.82
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGCCTATAATGCCAGTGAGAC
Found at i:78421166 original size:21 final size:21
Alignment explanation
Indices: 78421141--78421191 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
78421131 TTGTTTCTAC
*
78421141 TCTCACCGCTACAGTATCCAA
1 TCTCACCGCTACAGTAACCAA
* *
78421162 TCTCACCGCTATAGTAACTAA
1 TCTCACCGCTACAGTAACCAA
78421183 TCTCACCGC
1 TCTCACCGC
78421192 CACCGCTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.27, C:0.37, G:0.10, T:0.25
Consensus pattern (21 bp):
TCTCACCGCTACAGTAACCAA
Found at i:78438263 original size:12 final size:12
Alignment explanation
Indices: 78438246--78438271 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
78438236 AAGAAAATAA
78438246 GAATGTTGATTG
1 GAATGTTGATTG
78438258 GAATGTTGATTG
1 GAATGTTGATTG
78438270 GA
1 GA
78438272 TTACTAGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.38
Consensus pattern (12 bp):
GAATGTTGATTG
Found at i:78441927 original size:23 final size:21
Alignment explanation
Indices: 78441875--78441928 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
78441865 AATAAAACCT
* *
78441875 TAAAATATAACACTTAATAAA
1 TAAAAAATTACACTTAATAAA
* *
78441896 TATATAATTACACTTATATATAA
1 TAAAAAATTACACTTA-ATA-AA
78441919 TAAAAAATTA
1 TAAAAAATTA
78441929 ACCGAACCAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 12 0.48
22 3 0.12
23 10 0.40
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAAAATTACACTTAATAAA
Found at i:78445713 original size:37 final size:38
Alignment explanation
Indices: 78445582--78445730 Score: 185
Period size: 39 Copynumber: 3.9 Consensus size: 38
78445572 ATAAAGTATG
* * *
78445582 GTTTTAATTAATAATAAAACAAAATAGTATGAGGAAGTA
1 GTTTTAATTAACAATAAAACAAAATAGCATG-GGGAGTA
* *
78445621 GTTTTAATTAACAATAAAACAAAATAGTATGGGGAAATA
1 GTTTTAATTAACAATAAAACAAAATAGCATGGGG-AGTA
78445660 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGT-
1 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGTA
* * *
78445697 GTTTTTGATT-ATAATAAAACAAAGTAGCATGGGG
1 G-TTTTAATTAACAATAAAACAAAATAGCATGGGG
78445731 GGAGTGGAAT
Statistics
Matches: 100, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
37 23 0.23
38 11 0.11
39 66 0.66
ACGTcount: A:0.47, C:0.05, G:0.18, T:0.30
Consensus pattern (38 bp):
GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGTA
Found at i:78445733 original size:78 final size:78
Alignment explanation
Indices: 78445582--78445730 Score: 205
Period size: 78 Copynumber: 1.9 Consensus size: 78
78445572 ATAAAGTATG
* *
78445582 GTTTTAATTAATAATAAAACAAAATAGTATGAGGAAGTAGTTTTAATTAACAATAAAACAAAATA
1 GTTTTAATTAACAATAAAACAAAATAGCATGAGGAAGTAGTTTTAATTAACAATAAAACAAAATA
*
78445647 GTATGGGGAAATA
66 GCATGGGGAAATA
* * * *
78445660 GTTTTAATTAACAATAAAACAAAATAGCATG-GGGAGT-GTTTTTGATT-ATAATAAAACAAAGT
1 GTTTTAATTAACAATAAAACAAAATAGCATGAGGAAGTAG-TTTTAATTAACAATAAAACAAAAT
78445722 AGCATGGGG
65 AGCATGGGG
78445731 GGAGTGGAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
76 22 0.35
77 12 0.19
78 29 0.46
ACGTcount: A:0.47, C:0.05, G:0.18, T:0.30
Consensus pattern (78 bp):
GTTTTAATTAACAATAAAACAAAATAGCATGAGGAAGTAGTTTTAATTAACAATAAAACAAAATA
GCATGGGGAAATA
Found at i:78446262 original size:24 final size:26
Alignment explanation
Indices: 78446235--78446283 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
78446225 TGTATATACC
*
78446235 ATGTAAATATTTTA-ATAT-TATATT
1 ATGTAAACATTTTATATATATATATT
*
78446259 ATGTATACATTTTATATATATATAT
1 ATGTAAACATTTTATATATATATAT
78446284 CTTTTAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
25 4 0.19
26 5 0.24
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (26 bp):
ATGTAAACATTTTATATATATATATT
Found at i:78448829 original size:27 final size:27
Alignment explanation
Indices: 78448775--78448825 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
78448765 TGTCTTTCTT
*
78448775 CTCCTCTTCCTATCCCACGCTTTCACC
1 CTCCTCCTCCTATCCCACGCTTTCACC
* *
78448802 CTCCTCCTCCT-TCCCTCTCTTTCA
1 CTCCTCCTCCTATCCCACGCTTTCA
78448826 ACCCCACTCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 11 0.52
27 10 0.48
ACGTcount: A:0.08, C:0.53, G:0.02, T:0.37
Consensus pattern (27 bp):
CTCCTCCTCCTATCCCACGCTTTCACC
Found at i:78461387 original size:37 final size:36
Alignment explanation
Indices: 78461308--78461387 Score: 90
Period size: 37 Copynumber: 2.2 Consensus size: 36
78461298 ATCTCACTTA
* * *
78461308 TTTTTAATTTACTAATTTCTTATCTAAAATACTTTT
1 TTTTTTATTTAATAATTTCTTATATAAAATACTTTT
*
78461344 TATTTTTATTTAATAATTT-TTAATATAAAATAGGTTTT
1 T-TTTTTATTTAATAATTTCTT-ATATAAAATA-CTTTT
78461382 TTTTTT
1 TTTTTT
78461388 CGAATGATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
36 3 0.08
37 29 0.78
38 5 0.14
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (36 bp):
TTTTTTATTTAATAATTTCTTATATAAAATACTTTT
Found at i:78461471 original size:22 final size:22
Alignment explanation
Indices: 78461421--78461471 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
78461411 TTTGTGTAAT
* *
78461421 TTACTTTTTTTTTAAATTTTTT
1 TTACTTTTTTTTTAAATTATTG
78461443 TTA-TTTTTTGTTTAAA-TATTG
1 TTACTTTTTT-TTTAAATTATTG
78461464 TTACTTTT
1 TTACTTTT
78461472 AATATAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.73
Consensus pattern (22 bp):
TTACTTTTTTTTTAAATTATTG
Found at i:78465150 original size:3 final size:3
Alignment explanation
Indices: 78465137--78465177 Score: 73
Period size: 3 Copynumber: 13.3 Consensus size: 3
78465127 TTACACTAGC
78465137 TAA TCAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
78465178 TATTAAATAG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:78469806 original size:2 final size:2
Alignment explanation
Indices: 78469799--78469830 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
78469789 TTCATCTTTA
78469799 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78469831 GGAAGAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78479431 original size:31 final size:32
Alignment explanation
Indices: 78479382--78479449 Score: 84
Period size: 31 Copynumber: 2.1 Consensus size: 32
78479372 ATTATACACG
* *
78479382 TAAAATTTTAATTATGATTTAA-ATATATATT
1 TAAAAATTTAATTATGATTTAACATACATATT
* *
78479413 TAAAAATTTAGTTTTGATTTAATCATACATATT
1 TAAAAATTTAATTATGATTTAA-CATACATATT
78479446 TAAA
1 TAAA
78479450 TAAATAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 19 0.61
33 12 0.39
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.49
Consensus pattern (32 bp):
TAAAAATTTAATTATGATTTAACATACATATT
Found at i:78479614 original size:29 final size:30
Alignment explanation
Indices: 78479579--78479648 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
78479569 AAATCAATTT
*
78479579 TTCATGTATAAAATT-ACATCAAATTAAAG
1 TTCATGTATAAAATTAACATCAAATCAAAG
* * *
78479608 TTCATGTATACAATTACACATTAAATCATAG
1 TTCATGTATAAAATTA-ACATCAAATCAAAG
78479639 TTCATGTATA
1 TTCATGTATA
78479649 GTTTTGATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 14 0.40
31 21 0.60
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (30 bp):
TTCATGTATAAAATTAACATCAAATCAAAG
Found at i:78480983 original size:7 final size:7
Alignment explanation
Indices: 78480971--78480996 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
78480961 ATTTTAATAA
78480971 TATTTAC
1 TATTTAC
78480978 TATTTAC
1 TATTTAC
78480985 TATTTAC
1 TATTTAC
78480992 TATTT
1 TATTT
78480997 CAATCCTCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.62
Consensus pattern (7 bp):
TATTTAC
Found at i:78485265 original size:29 final size:29
Alignment explanation
Indices: 78485233--78485291 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
78485223 TGGTCACTAA
78485233 TTTTATATTTTT-AAAAATTAATTTTAATT
1 TTTTAT-TTTTTCAAAAATTAATTTTAATT
*
78485262 TTTTCTTTTTTCAAAAATTAATTTTAATT
1 TTTTATTTTTTCAAAAATTAATTTTAATT
78485291 T
1 T
78485292 CTCCAATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 5 0.18
29 23 0.82
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (29 bp):
TTTTATTTTTTCAAAAATTAATTTTAATT
Found at i:78485530 original size:18 final size:17
Alignment explanation
Indices: 78485500--78485533 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
78485490 ATCATTCTAT
*
78485500 ATTTTTTATTTAATTTA
1 ATTTTTTACTTAATTTA
78485517 ATTTTTATACTTAATTT
1 ATTTTT-TACTTAATTT
78485534 TTAGATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTTACTTAATTTA
Found at i:78485987 original size:56 final size:56
Alignment explanation
Indices: 78485901--78486013 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
78485891 GAATCACTAA
78485901 TCTTATAGAGCTTTTATATTATTAGATCACAGTAATGCCCTTACCATATATAATTT
1 TCTTATAGAGCTTTTATATTATTAGATCACAGTAATGCCCTTACCATATATAATTT
78485957 TCTTATAGAGCTTTTATATTATTAGATCACAGTAATGCCCTTACCATATATAATTT
1 TCTTATAGAGCTTTTATATTATTAGATCACAGTAATGCCCTTACCATATATAATTT
78486013 T
1 T
78486014 AAACCTAAGC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (56 bp):
TCTTATAGAGCTTTTATATTATTAGATCACAGTAATGCCCTTACCATATATAATTT
Found at i:78492868 original size:12 final size:12
Alignment explanation
Indices: 78492851--78492876 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
78492841 TTATCTATGA
78492851 TACTCAATATAT
1 TACTCAATATAT
78492863 TACTCAATATAT
1 TACTCAATATAT
78492875 TA
1 TA
78492877 ATGTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (12 bp):
TACTCAATATAT
Found at i:78493502 original size:30 final size:30
Alignment explanation
Indices: 78493468--78493526 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
78493458 TTTAACAAGT
78493468 AAATGCCTCTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
*
78493498 AAATGCCTTTAAAATAATAACAAAATTAA
1 AAATGCCTCTAAAATAATAACAAAATTAA
78493527 TAAGAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAC
Found at i:78493584 original size:22 final size:22
Alignment explanation
Indices: 78493559--78493601 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
78493549 TATCCAAACA
78493559 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
78493581 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
78493602 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:78493605 original size:11 final size:11
Alignment explanation
Indices: 78493566--78493606 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
78493556 ACAATAACAA
78493566 CAAAATAGTAG
1 CAAAATAGTAG
* *
78493577 CAACATAATAG
1 CAAAATAGTAG
*
78493588 TAAAATAGTAG
1 CAAAATAGTAG
78493599 CAAAATAG
1 CAAAATAG
78493607 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:78517741 original size:53 final size:53
Alignment explanation
Indices: 78517600--78517750 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
78517590 ATAAGTGCGC
* **
78517600 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
78517653 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
78517706 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
78517751 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:78520688 original size:16 final size:18
Alignment explanation
Indices: 78520669--78520708 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
78520659 TATGTTTGTT
78520669 TACTGAG-AAG-TTTTTC
1 TACTGAGTAAGTTTTTTC
*
78520685 TACTGAGTTAGTTTTTTC
1 TACTGAGTAAGTTTTTTC
78520703 TACTGA
1 TACTGA
78520709 TTTTAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.33
17 2 0.10
18 12 0.57
ACGTcount: A:0.23, C:0.12, G:0.17, T:0.47
Consensus pattern (18 bp):
TACTGAGTAAGTTTTTTC
Found at i:78521916 original size:25 final size:24
Alignment explanation
Indices: 78521888--78521967 Score: 72
Period size: 23 Copynumber: 3.3 Consensus size: 24
78521878 AAAATTAATT
*
78521888 TAAATTTTTAAAAATTATAAAAATA
1 TAAATTTTT-AAAATAATAAAAATA
* *
78521913 TAAATTATTAAAATAAT-AAAATT
1 TAAATTTTTAAAATAATAAAAATA
* ** *
78521936 TATATTTTTACTATCATAAAAATA
1 TAAATTTTTAAAATAATAAAAATA
78521960 TATAATTT
1 TA-AATTT
78521968 AATTATTACT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
23 17 0.40
24 14 0.33
25 12 0.28
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (24 bp):
TAAATTTTTAAAATAATAAAAATA
Found at i:78521919 original size:15 final size:16
Alignment explanation
Indices: 78521899--78521932 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
78521889 AAATTTTTAA
78521899 AAATTATAAAAAT-AT
1 AAATTATAAAAATAAT
*
78521914 AAATTATTAAAATAAT
1 AAATTATAAAAATAAT
78521930 AAA
1 AAA
78521933 ATTTATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AAATTATAAAAATAAT
Found at i:78540051 original size:3 final size:3
Alignment explanation
Indices: 78540043--78540078 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
78540033 ATCCGACCCC
78540043 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
78540079 CAAGAGTTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:78551469 original size:14 final size:14
Alignment explanation
Indices: 78551433--78551475 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
78551423 GAGAGAGAAT
*
78551433 ATAAAGAAAAATGA
1 ATAAAGAAAAAAGA
* *
78551447 ATCATGAAAAAAGA
1 ATAAAGAAAAAAGA
*
78551461 ATAAGGAAAAAAGA
1 ATAAAGAAAAAAGA
78551475 A
1 A
78551476 GGGGGGAAGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.70, C:0.02, G:0.16, T:0.12
Consensus pattern (14 bp):
ATAAAGAAAAAAGA
Found at i:78556710 original size:29 final size:28
Alignment explanation
Indices: 78556677--78556738 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 28
78556667 TAAATATTAA
78556677 AATTATACATA-AATTTTAATTTAATGTGT
1 AATTATACATAGAATTTTAATTT-A-GTGT
*
78556706 AATTATATATATGAATTTTAATTTAGTGT
1 AATTATACATA-GAATTTTAATTTAGTGT
78556735 AATT
1 AATT
78556739 TTATATGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 18 0.60
30 1 0.03
31 11 0.37
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.50
Consensus pattern (28 bp):
AATTATACATAGAATTTTAATTTAGTGT
Found at i:78556740 original size:16 final size:16
Alignment explanation
Indices: 78556688--78556741 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
78556678 ATTATACATA
78556688 AATTTTAATTTAATGTGT
1 AATTTTAATTT-A-GTGT
* *
78556706 AATTAT-ATATA-TG-
1 AATTTTAATTTAGTGT
78556719 AATTTTAATTTAGTGT
1 AATTTTAATTTAGTGT
78556735 AATTTTA
1 AATTTTA
78556742 TATGTAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
13 5 0.17
14 6 0.21
15 2 0.07
16 8 0.28
17 3 0.10
18 5 0.17
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (16 bp):
AATTTTAATTTAGTGT
Found at i:78556743 original size:29 final size:29
Alignment explanation
Indices: 78556679--78556763 Score: 98
Period size: 31 Copynumber: 2.8 Consensus size: 29
78556669 AATATTAAAA
*
78556679 TTATACATAAATTTTAATTTAATGTGTAATT
1 TTATATATAAATTTTAATTT-A-GTGTAATT
* *
78556710 ATATATATGAATTTTAATTTAGTGTAATT
1 TTATATATAAATTTTAATTTAGTGTAATT
*
78556739 TTATATGTAAAATTTTAATTGTAGT
1 TTATATAT-AAATTTTAATT-TAGT
78556764 TCAAATATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
29 14 0.30
30 11 0.24
31 21 0.46
ACGTcount: A:0.38, C:0.01, G:0.09, T:0.52
Consensus pattern (29 bp):
TTATATATAAATTTTAATTTAGTGTAATT
Found at i:78570632 original size:39 final size:39
Alignment explanation
Indices: 78570585--78570696 Score: 215
Period size: 39 Copynumber: 2.9 Consensus size: 39
78570575 ATCATAACTC
*
78570585 GCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATTT
1 GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTT
78570624 GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTT
1 GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTT
78570663 GCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 GCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
78570697 TCGAACATTC
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTT
Found at i:78578643 original size:39 final size:39
Alignment explanation
Indices: 78578568--78578750 Score: 312
Period size: 39 Copynumber: 4.7 Consensus size: 39
78578558 CCGCACAAAG
*
78578568 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
78578608 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
78578647 GCCTTCGGGCTTAGCCCGGGTATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
78578686 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
78578725 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
78578751 TCGAACATTC
Statistics
Matches: 134, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 125 0.93
40 9 0.07
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:78578685 original size:78 final size:78
Alignment explanation
Indices: 78578528--78578750 Score: 320
Period size: 78 Copynumber: 2.8 Consensus size: 78
78578518 TCGTTCAAAC
* * ** * ** *
78578528 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC
78578593 ACAATTTGCACAATT
64 ACAATTTGCACAATT
*
78578608 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGGTATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
78578673 AATTTGCACAATT
66 AATTTGCACAATT
* * *
78578686 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
78578751 TCGAACATTC
Statistics
Matches: 130, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
78 89 0.68
79 32 0.25
80 9 0.07
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (78 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
AATTTGCACAATT
Found at i:78580426 original size:24 final size:24
Alignment explanation
Indices: 78580394--78580441 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
78580384 TCCCTCCCAG
78580394 AGGTGTTATGATAAATTTATATAT
1 AGGTGTTATGATAAATTTATATAT
*
78580418 AGGTGTTATGATGAATTTATATAT
1 AGGTGTTATGATAAATTTATATAT
78580442 GGGGAATAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (24 bp):
AGGTGTTATGATAAATTTATATAT
Found at i:78590123 original size:13 final size:12
Alignment explanation
Indices: 78590105--78590134 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
78590095 GTGTTTAATG
78590105 ATTTTTATTATGA
1 ATTTTTA-TATGA
78590118 ATTTTTATATGA
1 ATTTTTATATGA
78590130 ATTTT
1 ATTTT
78590135 CTGGTGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
ATTTTTATATGA
Found at i:78591142 original size:31 final size:31
Alignment explanation
Indices: 78591107--78591234 Score: 84
Period size: 31 Copynumber: 4.2 Consensus size: 31
78591097 CATTAGAGAT
*
78591107 TTAAAACTTGGGTAATTAAAATGAAAATACC
1 TTAAAACTTGGGTAACTAAAATGAAAATACC
* * * *
78591138 TTAAAAATTGAGTGACCAAATTATGAAAA-A--
1 TTAAAACTTGGGTAACTAAA--ATGAAAATACC
* ** * * * *
78591168 TT-TATTTTGGGTGACTAAAAGGAAAACACT
1 TTAAAACTTGGGTAACTAAAATGAAAATACC
* *
78591198 TTAAAACTTAGGTAATTAAAATGAAAATACC
1 TTAAAACTTGGGTAACTAAAATGAAAATACC
78591229 TTAAAA
1 TTAAAA
78591235 ATTGAGTGAC
Statistics
Matches: 71, Mismatches: 20, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
27 6 0.08
28 1 0.01
29 12 0.17
30 4 0.06
31 40 0.56
32 1 0.01
33 7 0.10
ACGTcount: A:0.48, C:0.09, G:0.13, T:0.30
Consensus pattern (31 bp):
TTAAAACTTGGGTAACTAAAATGAAAATACC
Found at i:78597525 original size:37 final size:37
Alignment explanation
Indices: 78597483--78597559 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
78597473 TATTAGAGTA
78597483 AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT
1 AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT
78597520 AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT
1 AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT
78597557 AGT
1 AGT
78597560 CTTTTTAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (37 bp):
AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT
Found at i:78605066 original size:33 final size:33
Alignment explanation
Indices: 78605029--78605094 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
78605019 AAAAGAAAAG
*
78605029 AAAAGATGGATTTGGTTAAATCTGTGAAGAACT
1 AAAAGATGAATTTGGTTAAATCTGTGAAGAACT
78605062 AAAAGATGAATTTGGTTAAATCTGTGAAGAACT
1 AAAAGATGAATTTGGTTAAATCTGTGAAGAACT
78605095 CAAATTAGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.30
Consensus pattern (33 bp):
AAAAGATGAATTTGGTTAAATCTGTGAAGAACT
Found at i:78623072 original size:15 final size:17
Alignment explanation
Indices: 78623048--78623080 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
78623038 TTAATGTATT
78623048 AAAAATATAATGA-AAG
1 AAAAATATAATGATAAG
78623064 AAAAA-ATAATGATAAG
1 AAAAATATAATGATAAG
78623080 A
1 A
78623081 CCATCTCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.18
Consensus pattern (17 bp):
AAAAATATAATGATAAG
Found at i:78627587 original size:37 final size:37
Alignment explanation
Indices: 78627546--78627621 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
78627536 AATAGGACCA
78627546 AAATATTATAAATAGATAATGTTATTAATTATTTTAT
1 AAATATTATAAATAGATAATGTTATTAATTATTTTAT
*
78627583 AAATATTATAAATAGATAATGTTATTGATTATTTTAT
1 AAATATTATAAATAGATAATGTTATTAATTATTTTAT
78627620 AA
1 AA
78627622 TAAAAAATTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.47
Consensus pattern (37 bp):
AAATATTATAAATAGATAATGTTATTAATTATTTTAT
Found at i:78628445 original size:14 final size:14
Alignment explanation
Indices: 78628426--78628452 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
78628416 TAAATCATGA
78628426 AATTTTTCATTTTC
1 AATTTTTCATTTTC
78628440 AATTTTTCATTTT
1 AATTTTTCATTTT
78628453 ATTGAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (14 bp):
AATTTTTCATTTTC
Found at i:78628860 original size:13 final size:13
Alignment explanation
Indices: 78628842--78628866 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78628832 ATTCAATACT
78628842 TAATATAAATTTC
1 TAATATAAATTTC
78628855 TAATATAAATTT
1 TAATATAAATTT
78628867 AGTACTTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATATAAATTTC
Found at i:78630780 original size:191 final size:192
Alignment explanation
Indices: 78630455--78630839 Score: 718
Period size: 191 Copynumber: 2.0 Consensus size: 192
78630445 CATTAGAAAA
* *
78630455 AAACTCATCAAAATGATGTTTAATTGATAAGAAAGCTTACAACTATCTTTTTCTTGTTTGTATTA
1 AAACTCATCAAAACGATGTTTAATTAATAAGAAAGCTTACAACTATCTTTTTCTTGTTTGTATTA
78630520 TAAATTTCAGGGTAATGAATTTTTATATAGGATGGTTGAACCAGTTTTGTCCTTTCCCTTAAAAG
66 TAAATTTCAGGGTAATGAATTTTTATATAGGATGGTTGAACCAGTTTTGTCCTTTCCCTTAAAAG
* *
78630585 GTGTCATATACCTACATAAAGCATCTTCTCACATTTCTACACAAGTTACAGCTCAATATAAC
131 GTGTCATATACCTACATAAAGCATCTTCTCACATTTCTACAAAAGTTACAACTCAATATAAC
78630647 AAACTCATCAAAACGATGTTTAATTAATAAGAAAGCTTACAACTA-CTTTTTCTTGTTTGTATTA
1 AAACTCATCAAAACGATGTTTAATTAATAAGAAAGCTTACAACTATCTTTTTCTTGTTTGTATTA
*
78630711 TAAATTTCAGGGTAATGAATTTTTATATAGGATGGTTGAACCAGTTTTGTCCTTTCTCTTAAAAG
66 TAAATTTCAGGGTAATGAATTTTTATATAGGATGGTTGAACCAGTTTTGTCCTTTCCCTTAAAAG
78630776 GTGTCATATACCTACATAAAGCATCTTCTCACATTTCTACAAAAGTTACAACTCAATATAAC
131 GTGTCATATACCTACATAAAGCATCTTCTCACATTTCTACAAAAGTTACAACTCAATATAAC
78630838 AA
1 AA
78630840 TTTAAAAAAA
Statistics
Matches: 188, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
191 145 0.77
192 43 0.23
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (192 bp):
AAACTCATCAAAACGATGTTTAATTAATAAGAAAGCTTACAACTATCTTTTTCTTGTTTGTATTA
TAAATTTCAGGGTAATGAATTTTTATATAGGATGGTTGAACCAGTTTTGTCCTTTCCCTTAAAAG
GTGTCATATACCTACATAAAGCATCTTCTCACATTTCTACAAAAGTTACAACTCAATATAAC
Found at i:78637462 original size:20 final size:21
Alignment explanation
Indices: 78637428--78637481 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
78637418 TGATGATATT
*
78637428 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
78637449 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
78637469 TTTTATTATTTTA
1 TTATATTATTTTA
78637482 TTATTGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:78637495 original size:11 final size:11
Alignment explanation
Indices: 78637471--78637509 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
78637461 ATGAGATATT
78637471 TTATTATTTTA
1 TTATTATTTTA
* *
78637482 TTATTGTTTCA
1 TTATTATTTTA
78637493 TTATTATTTTA
1 TTATTATTTTA
78637504 TTATTA
1 TTATTA
78637510 ATTATTTAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:78639511 original size:61 final size:62
Alignment explanation
Indices: 78639367--78639520 Score: 274
Period size: 62 Copynumber: 2.5 Consensus size: 62
78639357 GGAATTGACG
* *
78639367 GTAAAAAGGATCTAGCCCGGACGGGTGATCCTATTCTGATATAGCCCTCCCGAAGAATACGT
1 GTAAAATGGATTTAGCCCGGACGGGTGATCCTATTCTGATATAGCCCTCCCGAAGAATACGT
78639429 GTAAAATGGATTTAGCCCGGACGGGTGATCCTATTCTGATATAGCCCT-CCGAAGAATACGT
1 GTAAAATGGATTTAGCCCGGACGGGTGATCCTATTCTGATATAGCCCTCCCGAAGAATACGT
*
78639490 GTAAAATGGATTTAGCCCGGACGGGTAATCC
1 GTAAAATGGATTTAGCCCGGACGGGTGATCC
78639521 GAATTAGGGT
Statistics
Matches: 89, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
61 43 0.48
62 46 0.52
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (62 bp):
GTAAAATGGATTTAGCCCGGACGGGTGATCCTATTCTGATATAGCCCTCCCGAAGAATACGT
Found at i:78639736 original size:27 final size:27
Alignment explanation
Indices: 78639676--78639729 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
78639666 ATCCCACTGT
78639676 AAGGATAAGGTTCGCGAGAGTGTGCTC
1 AAGGATAAGGTTCGCGAGAGTGTGCTC
78639703 AAGGATAAGGTTCGCGAGAGTGTGCTC
1 AAGGATAAGGTTCGCGAGAGTGTGCTC
78639730 TCTGATATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.37, T:0.22
Consensus pattern (27 bp):
AAGGATAAGGTTCGCGAGAGTGTGCTC
Found at i:78639803 original size:46 final size:46
Alignment explanation
Indices: 78639731--78639958 Score: 316
Period size: 46 Copynumber: 5.0 Consensus size: 46
78639721 AGTGTGCTCT
*
78639731 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
78639777 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
78639823 CTGATA-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
78639869 GTGATATGAAATGAACAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
78639915 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
78639959 TCATGTCAAA
Statistics
Matches: 165, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
45 2 0.01
46 162 0.98
47 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:78642023 original size:53 final size:53
Alignment explanation
Indices: 78641956--78642058 Score: 206
Period size: 53 Copynumber: 1.9 Consensus size: 53
78641946 TTATAGTAAA
78641956 TTTTTTTGGATTTTATATGGGTATCTTATATATACTGATATTTTCAGAGGAAT
1 TTTTTTTGGATTTTATATGGGTATCTTATATATACTGATATTTTCAGAGGAAT
78642009 TTTTTTTGGATTTTATATGGGTATCTTATATATACTGATATTTTCAGAGG
1 TTTTTTTGGATTTTATATGGGTATCTTATATATACTGATATTTTCAGAGG
78642059 CATATGGAAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.51
Consensus pattern (53 bp):
TTTTTTTGGATTTTATATGGGTATCTTATATATACTGATATTTTCAGAGGAAT
Found at i:78642928 original size:20 final size:21
Alignment explanation
Indices: 78642894--78642947 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
78642884 TGATGATATT
*
78642894 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
78642915 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
78642935 TTTTATTATTTTA
1 TTATATTATTTTA
78642948 TTATTGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:78642961 original size:11 final size:11
Alignment explanation
Indices: 78642937--78642975 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
78642927 ATGAGATATT
78642937 TTATTATTTTA
1 TTATTATTTTA
* *
78642948 TTATTGTTTCA
1 TTATTATTTTA
78642959 TTATTATTTTA
1 TTATTATTTTA
78642970 TTATTA
1 TTATTA
78642976 ATTATTTAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:78645168 original size:46 final size:46
Alignment explanation
Indices: 78645116--78645294 Score: 216
Period size: 46 Copynumber: 3.9 Consensus size: 46
78645106 CTCTGGTATG
* * * *
78645116 AAATGTGTAAGACTATGGTTGAAAGATACCATGGCAACCTAATAGA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGA
* *
78645162 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATG-
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA-GA
** * *
78645208 AAATGAACAAGACCATGGTTGAAAGATATCATGGCAACATGACAGA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGA
* * * *
78645254 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
78645295 TCAAAGATAA
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
45 1 0.01
46 113 0.98
47 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGA
Found at i:78647022 original size:2 final size:2
Alignment explanation
Indices: 78647017--78647053 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
78647007 ATATAACCCA
78647017 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
78647054 AGTTAAACAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:78650382 original size:25 final size:25
Alignment explanation
Indices: 78650329--78650387 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
78650319 CTTATTTCAT
* * *
78650329 TAAATAAA-AAATTTTAAAATATAA
1 TAAATAAATACATTTAAAAACATAA
78650353 TAAATCAAATACATTTAAAAACATAA
1 TAAAT-AAATACATTTAAAAACATAA
78650379 -AAATAAATA
1 TAAATAAATA
78650388 TTAAAACAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 10 0.33
25 7 0.23
26 13 0.43
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAATACATTTAAAAACATAA
Found at i:78654995 original size:13 final size:13
Alignment explanation
Indices: 78654979--78655029 Score: 61
Period size: 13 Copynumber: 3.9 Consensus size: 13
78654969 TAAATCAAAT
78654979 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
78654992 TTTTCCACAA-CAC
1 TTTT-CAAAAGCAC
78655005 TTCTT-AAAAGCAC
1 TT-TTCAAAAGCAC
78655018 TTTTCAAAAGCA
1 TTTTCAAAAGCA
78655030 TTGCCAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
12 5 0.16
13 21 0.66
14 6 0.19
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:78661671 original size:25 final size:25
Alignment explanation
Indices: 78661612--78661662 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
78661602 AAATGCTAAG
78661612 TATGAATCTACTGTTCAGAACTCTT
1 TATGAATCTACTGTTCAGAACTCTT
78661637 TATGAATCTACTGTTCAGAACTCTT
1 TATGAATCTACTGTTCAGAACTCTT
78661662 T
1 T
78661663 TCTTTTCTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (25 bp):
TATGAATCTACTGTTCAGAACTCTT
Found at i:78665505 original size:18 final size:19
Alignment explanation
Indices: 78665454--78665506 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 19
78665444 CATATATATG
78665454 AAATTTATAT-AATATTAT
1 AAATTTATATAAATATTAT
* *
78665472 AAA-ATAT-TAATGTATTA-
1 AAATTTATATAA-ATATTAT
78665489 AAATTTATATAAATATTA
1 AAATTTATATAAATATTA
78665507 CCCTACATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 8
0.69 0.10 0.21
Matches are distributed among these distances:
16 1 0.04
17 7 0.26
18 16 0.59
19 3 0.11
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
AAATTTATATAAATATTAT
Found at i:78666117 original size:22 final size:22
Alignment explanation
Indices: 78666089--78666137 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
78666079 GGGTTAGGGT
*
78666089 GGGTTAGGTTTTTTATGGTTTA
1 GGGTTAGGTTTTTTAAGGTTTA
78666111 GGGTTAGGTTTTTTAAGGTTTA
1 GGGTTAGGTTTTTTAAGGTTTA
*
78666133 TGGTT
1 GGGTT
78666138 TTTGTAAGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.14, C:0.00, G:0.33, T:0.53
Consensus pattern (22 bp):
GGGTTAGGTTTTTTAAGGTTTA
Found at i:78666125 original size:15 final size:17
Alignment explanation
Indices: 78666110--78666149 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
78666100 TTTATGGTTT
78666110 AGGGTTA-GGTTTTTTA
1 AGGGTTATGGTTTTTTA
*
78666126 AGGTTTATGGTTTTTGTA
1 AGGGTTATGGTTTTT-TA
78666144 AGGGTT
1 AGGGTT
78666150 TAATTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 7 0.35
18 7 0.35
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (17 bp):
AGGGTTATGGTTTTTTA
Found at i:78666180 original size:26 final size:26
Alignment explanation
Indices: 78666149--78666216 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
78666139 TTGTAAGGGT
*
78666149 TTAATTAATTAAATTAGGGTGTAAGA
1 TTAATTAATTAAATTAGGATGTAAGA
78666175 TTAATTAATTAAATTAGGATGTAAGA
1 TTAATTAATTAAATTAGGATGTAAGA
78666201 TTAATTAATTAAATTA
1 TTAATTAATTAAATTA
78666217 AATATTAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (26 bp):
TTAATTAATTAAATTAGGATGTAAGA
Found at i:78666474 original size:126 final size:125
Alignment explanation
Indices: 78666343--78666706 Score: 364
Period size: 125 Copynumber: 2.9 Consensus size: 125
78666333 AATTTTTGGT
* * *
78666343 TTTTTTTTCT-TCAGTAGTATCT-AGAAAA-AATTTTAAGAAT-AAGTTTTTGAAGAAATAGTAT
1 TTTTTTTTCTAT-AGTAGTATCTGAGAAAATAATTTTAAG-ATGAAGTTTCTAAAAAAATAGTAT
** *
78666404 CCAAAACGCTTTAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAATGCTCCAATGTAGACG
64 AAAAAACGCTTTAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAA-GCTCCAATGTAGACG
* * * *
78666467 TTTTTTTTCTATAGTGGTATCTGAGAAAATAATTTTGAGATGACGTTTCTAAAAAAATAGTGTAA
1 TTTTTTTTCTATAGTAGTATCTGAGAAAATAATTTTAAGATGAAGTTTCTAAAAAAATAGTATAA
* * *
78666532 AAAACGCTTTAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAGCTCCTACGTGGACG
66 AAAACGCTTTAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAGCTCCAATGTAGACG
* * ** * * * * * * *
78666592 CTCTTTTGATACT-GTGGTATCTGAAAAAATAATTGTGAGATGACA-TTTCTGAACAAATAGTGT
1 TTTTTTTTCTA-TAGTAGTATCTGAGAAAATAATTTTAAGATGA-AGTTTCTAAAAAAATAGTAT
* * * * *
78666655 CAAAAACGCTTCAAGCA-GATGCACTTTCAGCAAAATTATTGAGAAAAGCTCC
64 AAAAAACGCTTTAAGCAGGATGCACTGTCAGCAAAAGTACTGA-AAAAGCTCC
78666707 CACGTGGACA
Statistics
Matches: 206, Mismatches: 27, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
124 41 0.20
125 96 0.47
126 69 0.33
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (125 bp):
TTTTTTTTCTATAGTAGTATCTGAGAAAATAATTTTAAGATGAAGTTTCTAAAAAAATAGTATAA
AAAACGCTTTAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAGCTCCAATGTAGACG
Found at i:78666653 original size:125 final size:125
Alignment explanation
Indices: 78666406--78666725 Score: 419
Period size: 125 Copynumber: 2.5 Consensus size: 125
78666396 AATAGTATCC
* * * *
78666406 AAAACGCTTTAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAATGCTCCAATGTAGACGTTTT
1 AAAACGCTTTAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAA-GCTCCAACGTGGACGCTCT
** * * *
78666471 TTTTCTATAGTGGTATCTGAGAAAATAATTTTGAGATGACGTTTCTAAAAAAATAGTGTAA
65 TTTGATATAGTGGTATCTGAAAAAATAATTGTGAGATGACATTTCTAAAAAAATAGTGTAA
* *
78666532 AAAACGCTTTAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAGCTCCTACGTGGACGCTCTT
1 AAAACGCTTTAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAGCTCCAACGTGGACGCTCTT
* * *
78666597 TTGATACT-GTGGTATCTGAAAAAATAATTGTGAGATGACATTTCTGAACAAATAGTGTCA
66 TTGATA-TAGTGGTATCTGAAAAAATAATTGTGAGATGACATTTCTAAAAAAATAGTGTAA
* * * *
78666657 AAAACGCTTCAAGCA-GATGCACTTTCAGCAAAATTATTGAGAAAAGCTCCCACGTGGACACGCT
1 AAAACGCTTTAAGCAGGATGCACTGTCAGCAAAATTACTGA-AAAAGCTCCAACGTGG--ACGCT
78666721 CTTTT
63 CTTTT
78666726 TCTACAGTAG
Statistics
Matches: 171, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
124 22 0.13
125 94 0.55
126 45 0.26
127 10 0.06
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (125 bp):
AAAACGCTTTAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAGCTCCAACGTGGACGCTCTT
TTGATATAGTGGTATCTGAAAAAATAATTGTGAGATGACATTTCTAAAAAAATAGTGTAA
Found at i:78669849 original size:29 final size:29
Alignment explanation
Indices: 78669817--78669905 Score: 89
Period size: 29 Copynumber: 3.1 Consensus size: 29
78669807 AAAACATCAT
78669817 TTATTTTATTACAAATATAAAAGAGTAAA
1 TTATTTTATTACAAATATAAAAGAGTAAA
* * *
78669846 TTA--TAATTA-AAATACTAAAA-A-CAACTT
1 TTATTTTATTACAAATA-TAAAAGAGTAA--A
78669873 TTATTTTATTACAAATATAAAAGAGTAAA
1 TTATTTTATTACAAATATAAAAGAGTAAA
78669902 TTAT
1 TTAT
78669906 AATTAAAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 16
0.68 0.09 0.24
Matches are distributed among these distances:
25 2 0.04
26 6 0.13
27 13 0.28
29 17 0.37
30 6 0.13
31 2 0.04
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (29 bp):
TTATTTTATTACAAATATAAAAGAGTAAA
Found at i:78669864 original size:27 final size:27
Alignment explanation
Indices: 78669824--78669921 Score: 87
Period size: 27 Copynumber: 3.6 Consensus size: 27
78669814 CATTTATTTT
78669824 ATTACAAATATAAAAGAGTAAATTATA
1 ATTACAAATATAAAAGAGTAAATTATA
* * *
78669851 ATTA-AAATACTAAAA-A-CAACTTTTATTTT
1 ATTACAAATA-TAAAAGAGTAA--ATTA--TA
78669880 ATTACAAATATAAAAGAGTAAATTATA
1 ATTACAAATATAAAAGAGTAAATTATA
78669907 ATTA-AAATATTAAAA
1 ATTACAAATA-TAAAA
78669922 ATAGTTTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
25 2 0.04
26 11 0.20
27 22 0.39
29 13 0.23
30 6 0.11
31 2 0.04
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (27 bp):
ATTACAAATATAAAAGAGTAAATTATA
Found at i:78669867 original size:56 final size:56
Alignment explanation
Indices: 78669807--78669939 Score: 214
Period size: 56 Copynumber: 2.4 Consensus size: 56
78669797 TTCCTTATTC
*
78669807 AAAACATCATTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
1 AAAACATCTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
* *
78669863 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATATTA
1 AAAACATCTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
*
78669919 AAAATAGT-TTTTATTTTATTA
1 AAAACA-TCTTTTATTTTATTA
78669940 AATGAAAGAA
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
56 71 1.00
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40
Consensus pattern (56 bp):
AAAACATCTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
Found at i:78670379 original size:18 final size:18
Alignment explanation
Indices: 78670358--78670392 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78670348 AAAAGGAAAC
* *
78670358 ATATAAGGGTTAGGATAT
1 ATATAAGAGCTAGGATAT
78670376 ATATAAGAGCTAGGATA
1 ATATAAGAGCTAGGATA
78670393 CGCGCCTGGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.26, T:0.29
Consensus pattern (18 bp):
ATATAAGAGCTAGGATAT
Found at i:78671021 original size:7 final size:7
Alignment explanation
Indices: 78671011--78671070 Score: 102
Period size: 7 Copynumber: 8.6 Consensus size: 7
78671001 TTGTATACAT
78671011 AATACTA
1 AATACTA
78671018 AATACTA
1 AATACTA
78671025 AATACTA
1 AATACTA
78671032 AATACTA
1 AATACTA
78671039 AATACTA
1 AATACTA
*
78671046 AATATTA
1 AATACTA
78671053 AATACTA
1 AATACTA
*
78671060 AATACGA
1 AATACTA
78671067 AATA
1 AATA
78671071 AGTATTTTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 50 1.00
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:78672026 original size:23 final size:23
Alignment explanation
Indices: 78672000--78672065 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
78671990 TTTGCATAAA
78672000 TGAAAAAAAATATTAAATTGTAT
1 TGAAAAAAAATATTAAATTGTAT
* *
78672023 TGAAAAATTAAT-TAAAATTGTAT
1 TGAAAAA-AAATATTAAATTGTAT
**
78672046 AAATTAAAAAAATATTAAAT
1 TGA--AAAAAAATATTAAAT
78672066 ACTATTGACA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
23 18 0.55
24 6 0.18
25 9 0.27
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (23 bp):
TGAAAAAAAATATTAAATTGTAT
Found at i:78672240 original size:10 final size:10
Alignment explanation
Indices: 78672225--78672290 Score: 51
Period size: 10 Copynumber: 6.4 Consensus size: 10
78672215 TAAAGAGAGC
78672225 TTTGAGAAAA
1 TTTGAGAAAA
*
78672235 TTTGAGAGAA
1 TTTGAGAAAA
* *
78672245 TATGAGAGAAT
1 TTTGAGA-AAA
**
78672256 TTTTTGAAGAA
1 TTTGAGAA-AA
*
78672267 TTTGAGAGAA
1 TTTGAGAAAA
*
78672277 TTTGAGAGAA
1 TTTGAGAAAA
78672287 TTTG
1 TTTG
78672291 GATAGGAGGA
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
10 32 0.74
11 11 0.26
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.35
Consensus pattern (10 bp):
TTTGAGAAAA
Found at i:78672253 original size:22 final size:22
Alignment explanation
Indices: 78672228--78672287 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
78672218 AGAGAGCTTT
78672228 GAGAAAATTTGAGAGAATATGA
1 GAGAAAATTTGAGAGAATATGA
** *
78672250 GAGAATTTTTTGA-AGAATTTGA
1 GAGAA-AATTTGAGAGAATATGA
78672272 GAG--AATTTGAGAGAAT
1 GAGAAAATTTGAGAGAAT
78672288 TTGGATAGGA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 5 0.16
20 5 0.16
22 16 0.52
23 5 0.16
ACGTcount: A:0.43, C:0.00, G:0.27, T:0.30
Consensus pattern (22 bp):
GAGAAAATTTGAGAGAATATGA
Found at i:78680789 original size:30 final size:30
Alignment explanation
Indices: 78680728--78680790 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
78680718 AACTTGTTTA
**
78680728 TTGTTAATTTTGTTATTATTTTAGAGTCAT
1 TTGTTAATTTTGTTATTATTTTAGAACCAT
78680758 TTGTTAATTTTGTTATTATTTTAGAACCAT
1 TTGTTAATTTTGTTATTATTTTAGAACCAT
78680788 TTG
1 TTG
78680791 CCTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.05, G:0.13, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAACCAT
Found at i:78681493 original size:28 final size:29
Alignment explanation
Indices: 78681457--78681512 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
78681447 TTAAACAAAA
*
78681457 AATTATTGAAT-TTTTTTTTAAAGAGATG
1 AATTATTGAATATTGTTTTTAAAGAGATG
*
78681485 AATTCTTGAATATTGTTTTTAAAGAGAT
1 AATTATTGAATATTGTTTTTAAAGAGAT
78681513 TTCAGTACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 10 0.40
29 15 0.60
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (29 bp):
AATTATTGAATATTGTTTTTAAAGAGATG
Found at i:78681776 original size:135 final size:135
Alignment explanation
Indices: 78681611--78681881 Score: 429
Period size: 135 Copynumber: 2.0 Consensus size: 135
78681601 ACTTCATTTA
** * *
78681611 TTTACATTATTAAAAATTTAAAGGTAAACTAT-AAAATAATTACCCAAATTTAAATATTTTTTAA
1 TTTACATTATTAAAAATTTAAAAATAAACTATAAAAATAATCA-CCAAACTTAAATATTTTTTAA
* *
78681675 TACTCAATTATTAAATATTACATTTTAGTTATTAAAATTATGGAA-TTATAATATTTTAGTCACT
65 TACTCAACTATTAAATATTACATTTTAGTTATTAAAATTAT-GAAGTTATAATATTTTAGTCACC
78681739 CATCTAT
129 CATCTAT
* *
78681746 TTTACATTATTAAAAATTTAAAAATAAACTATAAAAATAATCATCAAACTTAATTATTTTTTAAT
1 TTTACATTATTAAAAATTTAAAAATAAACTATAAAAATAATCACCAAACTTAAATATTTTTTAAT
*
78681811 ACTCAACTATTAAATATTATATTTTAGTTATTAAAATTATGAAGTTATAATATTTTAGTCACCCA
66 ACTCAACTATTAAATATTACATTTTAGTTATTAAAATTATGAAGTTATAATATTTTAGTCACCCA
78681876 TCTAT
131 TCTAT
78681881 T
1 T
78681882 AACTACTTGT
Statistics
Matches: 125, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
134 3 0.02
135 113 0.90
136 9 0.07
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.44
Consensus pattern (135 bp):
TTTACATTATTAAAAATTTAAAAATAAACTATAAAAATAATCACCAAACTTAAATATTTTTTAAT
ACTCAACTATTAAATATTACATTTTAGTTATTAAAATTATGAAGTTATAATATTTTAGTCACCCA
TCTAT
Found at i:78687277 original size:9 final size:9
Alignment explanation
Indices: 78687263--78687331 Score: 54
Period size: 9 Copynumber: 7.7 Consensus size: 9
78687253 ATAATTATAA
78687263 AATTAACTG
1 AATTAACTG
78687272 AATTAA-TCG
1 AATTAACT-G
*
78687281 AATTAACCG
1 AATTAACTG
* *
78687290 AATTACCCG
1 AATTAACTG
*
78687299 AATT-ACTCA
1 AATTAACT-G
78687308 AATTAA-TCG
1 AATTAACT-G
78687317 AATTAACTG
1 AATTAACTG
78687326 AATTAA
1 AATTAA
78687332 TTGTATAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
8 2 0.04
9 45 0.92
10 2 0.04
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.30
Consensus pattern (9 bp):
AATTAACTG
Found at i:78687286 original size:18 final size:18
Alignment explanation
Indices: 78687263--78687332 Score: 88
Period size: 18 Copynumber: 3.9 Consensus size: 18
78687253 ATAATTATAA
78687263 AATTAACTGAATTAATCG
1 AATTAACTGAATTAATCG
* **
78687281 AATTAACCGAATTACCCG
1 AATTAACTGAATTAATCG
*
78687299 AATT-ACTCAAATTAATCG
1 AATTAACT-GAATTAATCG
78687317 AATTAACTGAATTAAT
1 AATTAACTGAATTAAT
78687333 TGTATAAAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
17 2 0.05
18 37 0.88
19 3 0.07
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (18 bp):
AATTAACTGAATTAATCG
Found at i:78687301 original size:27 final size:27
Alignment explanation
Indices: 78687263--78687332 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
78687253 ATAATTATAA
* *
78687263 AATTAACTGAATTAATCGAATTAACCG
1 AATTAACCGAATTAATCAAATTAACCG
* * *
78687290 AATTACCCGAATTACTCAAATTAATCG
1 AATTAACCGAATTAATCAAATTAACCG
*
78687317 AATTAACTGAATTAAT
1 AATTAACCGAATTAAT
78687333 TGTATAAAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTAACCGAATTAATCAAATTAACCG
Found at i:78687366 original size:13 final size:13
Alignment explanation
Indices: 78687347--78687399 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
78687337 TAAAATTATA
78687347 AGTTTTTGTTTTT
1 AGTTTTTGTTTTT
* *
78687360 TGTTTTTATTTTT
1 AGTTTTTGTTTTT
*
78687373 AGTTTTAG-TTTT
1 AGTTTTTGTTTTT
*
78687385 AGATTTTTATTTTT
1 AG-TTTTTGTTTTT
78687399 A
1 A
78687400 TTTATTAAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
12 6 0.19
13 20 0.65
14 5 0.16
ACGTcount: A:0.15, C:0.00, G:0.11, T:0.74
Consensus pattern (13 bp):
AGTTTTTGTTTTT
Found at i:78692810 original size:21 final size:20
Alignment explanation
Indices: 78692781--78692820 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
78692771 GTAAATAAAA
78692781 AAATTAAAAAAATAAAAATT
1 AAATTAAAAAAATAAAAATT
*
78692801 AAATTAAAAATAATAGAAAT
1 AAATTAAAAA-AATAAAAAT
78692821 ATATTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (20 bp):
AAATTAAAAAAATAAAAATT
Found at i:78694307 original size:18 final size:18
Alignment explanation
Indices: 78694254--78694309 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
78694244 AGTAAAGATT
*
78694254 TATTTTAATGTTCTTA-A
1 TATTTTAATGTTTTTATA
* *
78694271 TATTTTTATGTATTATATA
1 TATTTTAATGT-TTTTATA
*
78694290 TATTTTAATCTTTTTATA
1 TATTTTAATGTTTTTATA
78694308 TA
1 TA
78694310 AAAATAAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
17 10 0.32
18 11 0.35
19 10 0.32
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (18 bp):
TATTTTAATGTTTTTATA
Found at i:78695841 original size:27 final size:27
Alignment explanation
Indices: 78695807--78695868 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
78695797 TGTGTTAAAA
78695807 AATTATTTTAATATTTTTAGTACATTT
1 AATTATTTTAATATTTTTAGTACATTT
78695834 AATTATTTTAATATTTTTAGTACATTT
1 AATTATTTTAATATTTTTAGTACATTT
78695861 AATGTATT
1 AAT-TATT
78695869 ATATATATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 30 0.88
28 4 0.12
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (27 bp):
AATTATTTTAATATTTTTAGTACATTT
Found at i:78695874 original size:27 final size:27
Alignment explanation
Indices: 78695807--78695881 Score: 105
Period size: 27 Copynumber: 2.7 Consensus size: 27
78695797 TGTGTTAAAA
*
78695807 AATTATTTTAATATTTTTAGTACATTT
1 AATTATTATAATATTTTTAGTACATTT
*
78695834 AATTATTTTAATATTTTTAGTACATTT
1 AATTATTATAATATTTTTAGTACATTT
78695861 AATGTATTATATATATGTTTT
1 AAT-TATTATA-ATAT-TTTT
78695882 TAAAAAACTT
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
27 30 0.68
28 6 0.14
29 4 0.09
30 4 0.09
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (27 bp):
AATTATTATAATATTTTTAGTACATTT
Found at i:78696242 original size:66 final size:66
Alignment explanation
Indices: 78696135--78696263 Score: 213
Period size: 66 Copynumber: 2.0 Consensus size: 66
78696125 AATTATTCAA
*
78696135 TTGAGTTATTCACTTTCGTTATTATTTTAACGAATTATTTGATAGATTCAATGATATGATGTGGT
1 TTGAGTTATTCACTTTCATTATTATTTTAACGAATTATTTGATAGATTCAATGATATGATGTGGT
78696200 G
66 G
* * * *
78696201 TTGAGTTATTCACTTTTATTATTATTTTAATGAATTGTTTGATAGATTCGATGATATGATGTG
1 TTGAGTTATTCACTTTCATTATTATTTTAACGAATTATTTGATAGATTCAATGATATGATGTG
78696264 ACGATAAATT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.27, C:0.06, G:0.18, T:0.49
Consensus pattern (66 bp):
TTGAGTTATTCACTTTCATTATTATTTTAACGAATTATTTGATAGATTCAATGATATGATGTGGT
G
Found at i:78696471 original size:2 final size:2
Alignment explanation
Indices: 78696464--78696499 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
78696454 GTTTAAACTA
78696464 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78696500 CACTTAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78700795 original size:30 final size:30
Alignment explanation
Indices: 78700738--78700798 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
78700728 TTAAATGACG
*
78700738 TAATAATTTAGTGACTTAAATTAAATTTTT
1 TAATAATTTAGTGACTCAAATTAAATTTTT
**
78700768 TAATAATTTAGTGA-TCATTTTATAATTTTT
1 TAATAATTTAGTGACTCAAATTA-AATTTTT
78700798 T
1 T
78700799 TAAAATTAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 5 0.19
30 22 0.81
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.54
Consensus pattern (30 bp):
TAATAATTTAGTGACTCAAATTAAATTTTT
Found at i:78702560 original size:93 final size:93
Alignment explanation
Indices: 78702448--78702620 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
78702438 CACCCATAAG
* *
78702448 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78702513 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
78702541 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
78702606 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
78702621 CAAACATCCT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:78702616 original size:46 final size:46
Alignment explanation
Indices: 78702441--78702616 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
78702431 TGTAACCCAC
* * *
78702441 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
78702487 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
78702533 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
78702580 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
78702617 TGCCCAAACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:78702635 original size:46 final size:46
Alignment explanation
Indices: 78702449--78702635 Score: 145
Period size: 46 Copynumber: 4.0 Consensus size: 46
78702439 ACCCATAAGC
** *
78702449 GAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCCAT-ACATCC-T-AGT
* *
78702495 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT--C
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--TACATC-CTAGT
* * * * *
78702542 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGCCCATACATCCTAGT
* *
78702588 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCTAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCTAGT
78702634 GA
1 GA
78702636 CATGTCACTT
Statistics
Matches: 113, Mismatches: 16, Indels: 24
0.74 0.10 0.16
Matches are distributed among these distances:
44 8 0.07
46 61 0.54
47 31 0.27
48 1 0.01
49 5 0.04
50 5 0.04
51 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCTAGT
Found at i:78704118 original size:19 final size:19
Alignment explanation
Indices: 78704051--78704122 Score: 58
Period size: 19 Copynumber: 3.7 Consensus size: 19
78704041 CTTAATTTAA
*
78704051 TTTTAAAATATTAA-AAAT
1 TTTTAAAATTTTAATAAAT
* * *
78704069 ATTTTATAATTTTTAT-ACT
1 -TTTTAAAATTTTAATAAAT
*
78704088 TCTTAAACAATTTTAATAAAT
1 T-TTTAA-AATTTTAATAAAT
78704109 TTTTAAAATTTTAA
1 TTTTAAAATTTTAA
78704123 AAAAATAATT
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
18 1 0.03
19 24 0.60
20 12 0.30
21 3 0.08
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (19 bp):
TTTTAAAATTTTAATAAAT
Found at i:78704832 original size:30 final size:31
Alignment explanation
Indices: 78704762--78704837 Score: 75
Period size: 30 Copynumber: 2.5 Consensus size: 31
78704752 TTAAATTAAT
*
78704762 AAATATAAAATTTTATTTTAATCCCTTTAAAA
1 AAATAT-AAATTTTAATTTAATCCCTTTAAAA
** * *
78704794 ATGT-TAAATTTTAATTT-ATTCTTTTAAAA
1 AAATATAAATTTTAATTTAATCCCTTTAAAA
*
78704823 AAATATAAATATTAA
1 AAATATAAATTTTAA
78704838 AAATATTAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
29 12 0.34
30 20 0.57
31 1 0.03
32 2 0.06
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.46
Consensus pattern (31 bp):
AAATATAAATTTTAATTTAATCCCTTTAAAA
Done.