Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 275 of 292
Found at i:79005261 original size:30 final size:30
Alignment explanation
Indices: 79005220--79005286 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
79005210 AGAATATATA
* *
79005220 TTTTTAGCACTTACATTTTCAATACTTAAT
1 TTTTTAACACTTACATTTTCAACACTTAAT
** *
79005250 TTTTTAACACTTATTTTTTCAACCCTTAAT
1 TTTTTAACACTTACATTTTCAACACTTAAT
79005280 TTTTTAA
1 TTTTTAA
79005287 TTTATCAAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.28, C:0.16, G:0.01, T:0.54
Consensus pattern (30 bp):
TTTTTAACACTTACATTTTCAACACTTAAT
Found at i:79005265 original size:14 final size:15
Alignment explanation
Indices: 79005220--79005286 Score: 66
Period size: 15 Copynumber: 4.5 Consensus size: 15
79005210 AGAATATATA
*
79005220 TTTTTAGCACTTACA-
1 TTTTTAACACTTA-AT
* *
79005235 TTTTCAATACTTAAT
1 TTTTTAACACTTAAT
79005250 TTTTTAACACTT-AT
1 TTTTTAACACTTAAT
*
79005264 TTTTTCAACCCTTAAT
1 TTTTT-AACACTTAAT
79005280 TTTTTAA
1 TTTTTAA
79005287 TTTATCAAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
14 8 0.19
15 28 0.65
16 7 0.16
ACGTcount: A:0.28, C:0.16, G:0.01, T:0.54
Consensus pattern (15 bp):
TTTTTAACACTTAAT
Found at i:79006126 original size:13 final size:13
Alignment explanation
Indices: 79006108--79006135 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
79006098 AAGAGTGTTC
79006108 TTTATTTTAATTT
1 TTTATTTTAATTT
79006121 TTTATTTTAATTT
1 TTTATTTTAATTT
79006134 TT
1 TT
79006136 AATTCATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTATTTTAATTT
Found at i:79008911 original size:16 final size:16
Alignment explanation
Indices: 79008892--79008922 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79008882 AGAATGTTCG
79008892 TTTGAGTGAATAAATC
1 TTTGAGTGAATAAATC
*
79008908 TTTGGGTGAATAAAT
1 TTTGAGTGAATAAAT
79008923 TTGATTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.39
Consensus pattern (16 bp):
TTTGAGTGAATAAATC
Found at i:79010044 original size:13 final size:14
Alignment explanation
Indices: 79010026--79010055 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
79010016 TGATTTTTAA
79010026 AAAAATT-ATAAAT
1 AAAAATTAATAAAT
79010039 AAAAATTAATAAAT
1 AAAAATTAATAAAT
79010053 AAA
1 AAA
79010056 CTAAAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAAATTAATAAAT
Found at i:79019164 original size:24 final size:24
Alignment explanation
Indices: 79019115--79019164 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
79019105 ATTTTACTAT
* * *
79019115 TTTAAAATATAAAAATATTTTGTA
1 TTTAAAATAAAAAAAAATTATGTA
79019139 TTTAAAAGTAAAAAAAAATTAT-TA
1 TTTAAAA-TAAAAAAAAATTATGTA
79019163 TT
1 TT
79019165 AAGTAGCGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (24 bp):
TTTAAAATAAAAAAAAATTATGTA
Found at i:79030213 original size:21 final size:21
Alignment explanation
Indices: 79030187--79030231 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
79030177 CCTTCATCAT
79030187 TGATTATCACGTTACTACGGA
1 TGATTATCACGTTACTACGGA
79030208 TGATTATCACGTTACTACGGA
1 TGATTATCACGTTACTACGGA
79030229 TGA
1 TGA
79030232 CTTTTGAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (21 bp):
TGATTATCACGTTACTACGGA
Found at i:79030959 original size:2 final size:2
Alignment explanation
Indices: 79030952--79030983 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
79030942 AAATCAAACC
79030952 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79030984 CATTGGTGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79031009 original size:216 final size:217
Alignment explanation
Indices: 79030765--79031200 Score: 847
Period size: 217 Copynumber: 2.0 Consensus size: 217
79030755 CGTTCACTCT
79030765 TATCATGGGTGTGATCAACTCTATTATATATAATATTCGTATACAGTATGAGAAAAATTCATATA
1 TATCATGGGTGTGATCAACTCTATTATATATAATATTCGTATACAGTATGAGAAAAATTCATATA
79030830 ACAAATTTATAGTAAAAATTATTATAAAAAC-AATCATGTATATGTGATATTACATATTTTATAT
66 ACAAATTTATAGTAAAAATTATTATAAAAACAAATCATGTATATGTGATATTACATATTTTATAT
79030894 AGTTGAAATGGTAAAATTAAGATGACGAAAATTAAGATGTTTTGGTTCAAATCAAACCATATATA
131 AGTTGAAATGGTAAAATTAAGATGACGAAAATTAAGATGTTTTGGTTCAAATCAAACCATATATA
79030959 TATATATATATATATATATATA
196 TATATATATATATATATATATA
*
79030981 TATCATTGGTGTGATCAACTCTATTATATATAATATTCGTATACAGTATGAGAAAAATTCATATA
1 TATCATGGGTGTGATCAACTCTATTATATATAATATTCGTATACAGTATGAGAAAAATTCATATA
*
79031046 ACAAATTTATAGTAAAAATTATTATAAAAACAAATCATGTATATGTGTTATTACATATTTTATAT
66 ACAAATTTATAGTAAAAATTATTATAAAAACAAATCATGTATATGTGATATTACATATTTTATAT
79031111 AGTTGAAATGGTAAAATTAAGATGACGAAAATTAAGATGTTTTGGTTCAAATCAAACCATATATA
131 AGTTGAAATGGTAAAATTAAGATGACGAAAATTAAGATGTTTTGGTTCAAATCAAACCATATATA
79031176 TATATATATATATATATATATA
196 TATATATATATATATATATATA
79031198 TAT
1 TAT
79031201 GTATTATTCT
Statistics
Matches: 217, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
216 95 0.44
217 122 0.56
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.38
Consensus pattern (217 bp):
TATCATGGGTGTGATCAACTCTATTATATATAATATTCGTATACAGTATGAGAAAAATTCATATA
ACAAATTTATAGTAAAAATTATTATAAAAACAAATCATGTATATGTGATATTACATATTTTATAT
AGTTGAAATGGTAAAATTAAGATGACGAAAATTAAGATGTTTTGGTTCAAATCAAACCATATATA
TATATATATATATATATATATA
Found at i:79031176 original size:2 final size:2
Alignment explanation
Indices: 79031169--79031200 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
79031159 AAATCAAACC
79031169 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79031201 GTATTATTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79033070 original size:2 final size:2
Alignment explanation
Indices: 79033063--79033090 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
79033053 TTAATTCTTT
79033063 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
79033091 ATAATTAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:79040204 original size:3 final size:3
Alignment explanation
Indices: 79040196--79040228 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
79040186 TAGTAGAAGC
79040196 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
79040229 TTGCTTATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:79043142 original size:16 final size:17
Alignment explanation
Indices: 79043121--79043152 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
79043111 TAATATTTAC
79043121 ATATTTATTA-ATAAAT
1 ATATTTATTATATAAAT
79043137 ATATTTATTATATAAA
1 ATATTTATTATATAAA
79043153 ATTTTCATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTTATTATATAAAT
Found at i:79044434 original size:17 final size:17
Alignment explanation
Indices: 79044393--79044434 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
79044383 AACGTGCACC
*
79044393 ATAAATTATTTAATTTA
1 ATAAATTTTTTAATTTA
*
79044410 ATATATTTTTTATATTTA
1 ATAAATTTTTTA-ATTTA
79044428 A-AAATTT
1 ATAAATTT
79044435 AAGTATATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATAAATTTTTTAATTTA
Found at i:79045663 original size:22 final size:22
Alignment explanation
Indices: 79045610--79045663 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
79045600 GAATTAGTTG
* * **
79045610 TTTTCTTGTTGTTTTGCTTTCA
1 TTTTATTGTTGTTTTACTACCA
* *
79045632 TTTCACTGTTGTTTTACTACCA
1 TTTTATTGTTGTTTTACTACCA
79045654 TTTTATTGTT
1 TTTTATTGTT
79045664 ATTATTTGAA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.11, C:0.15, G:0.11, T:0.63
Consensus pattern (22 bp):
TTTTATTGTTGTTTTACTACCA
Found at i:79046652 original size:12 final size:13
Alignment explanation
Indices: 79046620--79046654 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
79046610 ATATTTGTCT
79046620 CTTTCCCCAAGTA
1 CTTTCCCCAAGTA
79046633 CTTTCCCCAAGTA
1 CTTTCCCCAAGTA
*
79046646 CTTCCCCCA
1 CTTTCCCCA
79046655 TTTTCTTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.20, C:0.46, G:0.06, T:0.29
Consensus pattern (13 bp):
CTTTCCCCAAGTA
Found at i:79051242 original size:16 final size:16
Alignment explanation
Indices: 79051194--79051242 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
79051184 ATTTTTAAAA
*
79051194 AATAATAATATTTTTT
1 AATAAAAATATTTTTT
* *
79051210 AATATTTAAATAATTTTT
1 AATA--AAAATATTTTTT
79051228 AATAAAAATATTTTT
1 AATAAAAATATTTTT
79051243 CGTATTTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
16 13 0.50
18 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATAAAAATATTTTTT
Found at i:79051486 original size:23 final size:22
Alignment explanation
Indices: 79051452--79051552 Score: 75
Period size: 23 Copynumber: 4.5 Consensus size: 22
79051442 TTATTTAAAT
79051452 AAATACTT-ATATTTATATAATTA
1 AAATA-TTAATATTT-TATAATTA
*
79051475 AAATATTAATATTTTATACAATA
1 AAATATTAATATTTTATA-ATTA
* *
79051498 AAATATTTATTATATTTATAATTG
1 AAATA-TTAATAT-TTTATAATTA
* *
79051522 TAATA-TAA-A-TTTATTATTA
1 AAATATTAATATTTTATAATTA
*
79051541 AAATATTGATAT
1 AAATATTAATAT
79051553 AGATATTTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 15
0.71 0.12 0.17
Matches are distributed among these distances:
19 12 0.20
20 2 0.03
21 2 0.03
22 8 0.13
23 19 0.31
24 12 0.20
25 6 0.10
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
AAATATTAATATTTTATAATTA
Found at i:79051613 original size:15 final size:16
Alignment explanation
Indices: 79051593--79051622 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79051583 TATTTAAAAT
79051593 TTAAAA-TTATTATTG
1 TTAAAATTTATTATTG
79051608 TTAAAATTTATTATT
1 TTAAAATTTATTATT
79051623 AAAATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
TTAAAATTTATTATTG
Found at i:79051641 original size:19 final size:18
Alignment explanation
Indices: 79051609--79051644 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
79051599 TTATTATTGT
*
79051609 TAAAATTTATTATTAAAA
1 TAAAATTTAATATTAAAA
79051627 TAAAATTGTAATATTAAA
1 TAAAATT-TAATATTAAA
79051645 TTATATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:79051676 original size:22 final size:22
Alignment explanation
Indices: 79051612--79051678 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
79051602 TTATTGTTAA
79051612 AATT-TATTATTAAA-AT-AA-
1 AATTATATTATTAAATATAAAT
* * *
79051630 AATTGTAATATTAAAT-TATATT
1 AATTATATTATTAAATATA-AAT
79051652 AATTATATTATTAAATATAAAT
1 AATTATATTATTAAATATAAAT
79051674 AATTA
1 AATTA
79051679 AATAGGTATG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
18 4 0.11
19 10 0.26
21 1 0.03
22 21 0.55
23 2 0.05
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (22 bp):
AATTATATTATTAAATATAAAT
Found at i:79053542 original size:45 final size:45
Alignment explanation
Indices: 79053487--79053576 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
79053477 CTTAAACCTT
79053487 GAATCAATGGATTATTACTGGGCATGGGCATTCTTGACTTTGTAG
1 GAATCAATGGATTATTACTGGGCATGGGCATTCTTGACTTTGTAG
*
79053532 GAATTAATGGATTATTACTGGGCATGGGCATTCTTGACTTTGTAG
1 GAATCAATGGATTATTACTGGGCATGGGCATTCTTGACTTTGTAG
79053577 ACTTCTTCTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.37
Consensus pattern (45 bp):
GAATCAATGGATTATTACTGGGCATGGGCATTCTTGACTTTGTAG
Found at i:79059226 original size:16 final size:16
Alignment explanation
Indices: 79059205--79059240 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
79059195 TTCTCTAATA
79059205 TATAATTAAAAATATT
1 TATAATTAAAAATATT
79059221 TATAATTAAAAATATT
1 TATAATTAAAAATATT
79059237 TATA
1 TATA
79059241 TTTCAACGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TATAATTAAAAATATT
Found at i:79083484 original size:33 final size:33
Alignment explanation
Indices: 79083381--79083472 Score: 166
Period size: 33 Copynumber: 2.8 Consensus size: 33
79083371 TCCAACTAAA
* *
79083381 CACACCAATGCTCATAAGAGCCAATCCATCCAT
1 CACACCAATGCTCATAAGAGCTAATCCAACCAT
79083414 CACACCAATGCTCATAAGAGCTAATCCAACCAT
1 CACACCAATGCTCATAAGAGCTAATCCAACCAT
79083447 CACACCAATGCTCATAAGAGCTAATC
1 CACACCAATGCTCATAAGAGCTAATC
79083473 TAACTAGCAC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.38, C:0.34, G:0.10, T:0.18
Consensus pattern (33 bp):
CACACCAATGCTCATAAGAGCTAATCCAACCAT
Found at i:79086205 original size:27 final size:30
Alignment explanation
Indices: 79086175--79086249 Score: 79
Period size: 28 Copynumber: 2.6 Consensus size: 30
79086165 CTATTAATTA
*
79086175 ATTTTTAAAA-TTA-AAAAATAAAAAAA-T
1 ATTTTTAAAATTTATAAAAACAAAAAAACT
*
79086202 A-TTTAAAAATTTATAAAAACAAAAAAACT
1 ATTTTTAAAATTTATAAAAACAAAAAAACT
*
79086231 ATTTTTTAATATTT-TAAAA
1 A-TTTTTAAAATTTATAAAA
79086250 TTAAAATTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 7 0.18
27 4 0.10
28 12 0.31
29 2 0.05
30 5 0.13
31 9 0.23
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (30 bp):
ATTTTTAAAATTTATAAAAACAAAAAAACT
Found at i:79099849 original size:11 final size:11
Alignment explanation
Indices: 79099833--79099861 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
79099823 TATAAAAATT
79099833 TTCTATTAAAA
1 TTCTATTAAAA
79099844 TTCTATTAAAA
1 TTCTATTAAAA
79099855 TTC-ATTA
1 TTCTATTA
79099862 TCAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (11 bp):
TTCTATTAAAA
Found at i:79100034 original size:31 final size:30
Alignment explanation
Indices: 79099990--79100078 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 30
79099980 TCAAGTTATT
79099990 AAATATTAAAATAAAAATAAAAATATAGAATC
1 AAATA-TAAAATAAAAATAAAAATATAG-ATC
*
79100022 AAA-ACTAAAATAAATAATAAAAAT-TAGATT
1 AAATA-TAAAATAAA-AATAAAAATATAGATC
*
79100052 AAATATAAAGATATAAAT-AAAATATAG
1 AAATATAAA-ATAAAAATAAAAATATAG
79100079 CAAGTCTTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
29 5 0.10
30 15 0.30
31 18 0.36
32 12 0.24
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.26
Consensus pattern (30 bp):
AAATATAAAATAAAAATAAAAATATAGATC
Found at i:79100044 original size:19 final size:19
Alignment explanation
Indices: 79099999--79100045 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
79099989 TAAATATTAA
*
79099999 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
79100018 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
79100037 AATAAAAAT
1 AATAAAAAT
79100046 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:79100525 original size:23 final size:23
Alignment explanation
Indices: 79100464--79100535 Score: 85
Period size: 23 Copynumber: 3.1 Consensus size: 23
79100454 AGAGATCTCT
79100464 TTTCTAGCAACTAAACACTTCAA
1 TTTCTAGCAACTAAACACTTCAA
* * *
79100487 TCTGC-AGCGA-TAAAACATTTCAA
1 T-TTCTAGCAACT-AAACACTTCAA
79100510 TTTCTAGCAACTAAACACTTCAA
1 TTTCTAGCAACTAAACACTTCAA
79100533 TTT
1 TTT
79100536 GCAGTACTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
22 3 0.08
23 33 0.85
24 3 0.08
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.32
Consensus pattern (23 bp):
TTTCTAGCAACTAAACACTTCAA
Found at i:79100547 original size:23 final size:23
Alignment explanation
Indices: 79100475--79100627 Score: 89
Period size: 23 Copynumber: 6.6 Consensus size: 23
79100465 TTCTAGCAAC
* *
79100475 TAAACACTTCAATCTGCAGCGA-T
1 TAAACACTTCAATTTACAGC-ACT
* *
79100498 AAAACATTTCAATTT-CTAGCAAC-
1 TAAACACTTCAATTTAC-AGC-ACT
* *
79100521 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTACAGCACT
* * * *
79100544 TAAAACATTTTAATTTACAACATT
1 T-AAACACTTCAATTTACAGCACT
* ***
79100568 TAAGCACTTCAATTTACAGTGTT
1 TAAACACTTCAATTTACAGCACT
*
79100591 TAAACACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTACAGCACT
*
79100614 TTAACA-TCTCAATT
1 TAAACACT-TCAATT
79100628 AACAACATTT
Statistics
Matches: 99, Mismatches: 25, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
22 4 0.04
23 77 0.78
24 18 0.18
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (23 bp):
TAAACACTTCAATTTACAGCACT
Found at i:79100712 original size:23 final size:24
Alignment explanation
Indices: 79100686--79100731 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
79100676 TTCCAGACAA
79100686 TTCAATTTACAACA-TTTAAACAT
1 TTCAATTTACAACATTTTAAACAT
*
79100709 TTCAATTTACAGCATTTTAAACA
1 TTCAATTTACAACATTTTAAACA
79100732 ATAGCAGCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.39
Consensus pattern (24 bp):
TTCAATTTACAACATTTTAAACAT
Found at i:79105376 original size:18 final size:17
Alignment explanation
Indices: 79105341--79105373 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
79105331 CTTTTTATTC
79105341 TTTTATTATTTCATTTA
1 TTTTATTATTTCATTTA
79105358 TTTTACTTATTT-ATTT
1 TTTTA-TTATTTCATTT
79105374 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTCATTTA
Found at i:79109599 original size:12 final size:12
Alignment explanation
Indices: 79109582--79109615 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
79109572 GGACTACGTA
79109582 CGCTCTGGCCGG
1 CGCTCTGGCCGG
79109594 CGCTCTGGCCGG
1 CGCTCTGGCCGG
79109606 CGCTCTGGCC
1 CGCTCTGGCC
79109616 TCTGACTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.44, G:0.38, T:0.18
Consensus pattern (12 bp):
CGCTCTGGCCGG
Found at i:79122048 original size:549 final size:548
Alignment explanation
Indices: 79121010--79122669 Score: 2475
Period size: 549 Copynumber: 3.0 Consensus size: 548
79121000 CTCACTATTC
**
79121010 CCTCCCTCAATTGACCATTCTCTTCGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGG
1 CCTCCCTCAGCTGACCATTCTCTTCGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGG
*
79121075 TTCTTTAGAGAAATGACCTCCAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTCCTG
66 TTCTTTAGAGAAATGACCTCAAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTCCTG
* *
79121140 CAGAACTCTCTGTTGATCCTCAGTCTTGCTTACTATCTCTTCTTTTGCCTTTTCTATCTCAATCA
131 CAGAACTCTCTGTTGATCCTCGGTCTTGCTGACTATCTCTTCTTTTGCCTTTTCTATCTCAATCA
* * *
79121205 TATGATCT-GAAATAGCTTGTGTTTTACTCTCAAGCTGAACTTCAAGTTCAGCTTTCTGGCTATG
196 CATGAT-TGGAAATAGCTTGAGTTTTACTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGGCTATG
* * * * * *
79121269 CATGGA-TCCCAGTTTCTGCTGCAATGTATTTATTTCATCCATCAAGCTCTTGACTTG-GTTTGA
260 CAGGGACT-CCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACTTGAG-TTGA
** * * *
79121332 TGCTTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTCAGTCCGCAGCAACTCCA
323 TGCTTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGCGACTCCA
* * *
79121397 TGTCTCCTAGCAGATTGTTAATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTGTCTCA
388 TGTCTGCTAGCAGATTGTTGATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTTTCTCA
* * * *
79121462 TTATCCTCAAACTTCTTTGTGAGAGTAAAAAGTTCTTCTTGTCTCGTTTTTAATACCCTCTCGAG
453 TTATCCTCAAACTTCTTTGTGAGAGTCAAAAGTTCTTCTTGTCTC-TTTTTGATATCATCTCGAG
** *
79121527 TTCTGAAATTTGATATTGCAGTCCCATATTTT
517 TTCTGAAATTTGGGATTGCAGTCCTATATTTT
*
79121559 CCTCCCTCAGCTGACCATTCTCTTCGATTTTAGTTCTCAGGTCCTCTTCCAGTTCACCTTTCTGG
1 CCTCCCTCAGCTGACCATTCTCTTCGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGG
79121624 TTCTTTAGAGAAATGACCTCAAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTCCTG
66 TTCTTTAGAGAAATGACCTCAAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTCCTG
* *
79121689 CAGAACTCTCTGTTGATCCTTGGTCTTGCTGACTATCTCTTCTTTTGCCTTCTCTATCTCAATCA
131 CAGAACTCTCTGTTGATCCTCGGTCTTGCTGACTATCTCTTCTTTTGCCTTTTCTATCTCAATCA
* *
79121754 CATGATTGGAAATAGCTTGAGTTTTTCTCTCAAGCTGAACTTCCAGTTCTGCTTTCTGGCTATGC
196 CATGATTGGAAATAGCTTGAGTTTTACTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGGCTATGC
* *
79121819 AGGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCCCTTGACCTGAGTTGATGC
261 AGGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACTTGAGTTGATGC
* *
79121884 TTCATCGCCTTTCACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGGGACTCCATGT
326 TTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGCGACTCCATGT
* * * ** *
79121949 CTGCTAGCAAATTGTTGCTCTGCACTGTTAAATTCTCCACTCTAGATAGCGATTCTTTCTCATTG
391 CTGCTAGCAGATTGTTGATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTTTCTCATTA
*
79122014 TCCTCAAACTTCTTTGTGAGTGTCAAAAGTTCTTCTTGTCTCTGTTTTGATATCATCTCGAGTTC
456 TCCTCAAACTTCTTTGTGAGAGTCAAAAGTTCTTCTTGTCTCT-TTTTGATATCATCTCGAGTTC
* * *
79122079 GGAAATTTGGGATTGCAGTCCTAAACTTT
520 TGAAATTTGGGATTGCAGTCCTATATTTT
* * * ** *
79122108 CCTCCCTCAGCTGACCATTCTCTTTGATTTTAGTTCGCAAATCCTCTTCCAACTCACCTTTCTGA
1 CCTCCCTCAGCTGACCATTCTCTTCGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGG
* * * *
79122173 TTCTTTAAAGAATTGACATCAAATTCTAGTTCCTTCATTTGTGCCAGCAAACCCTCTTTCTCCTG
66 TTCTTTAGAGAAATGACCTCAAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTCCTG
* * **
79122238 CAGAACTCTTTGTTGATCCTCGGTCTTGCTTG-CTATCTCTTCTTTTGCATTTTCTATCTTGATC
131 CAGAACTCTCTGTTGATCCTCGGTCTTGC-TGACTATCTCTTCTTTTGCCTTTTCTATCTCAATC
* * * *
79122302 ACATGATCGGAAATAGCTCGAGTTTTACTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGACTCTG
195 ACATGATTGGAAATAGCTTGAGTTTTACTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGGCTATG
* * *
79122367 CAGGGACTCCAGCTCCTGCTGCAAATTTTTTATCTGATCCATCAAGCTCTTGACTTGAGTCGATG
260 CAGGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACTTGAGTTGATG
** * * *
79122432 CTTCATCATCTTTTACTGCAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGTGACTCCATG
325 CTTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGCGACTCCATG
* *
79122497 TCTGCTAGCAGATTGTTGATCTGCACTGTCAGATTCTCCACTCTAGACAATGATTCTTTCTCATT
390 TCTGCTAGCAGATTGTTGATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTTTCTCATT
* * * * *
79122562 ATCCTCAAATTTCTTTGCGAGAGTCAAAAGTTCTTCTTCTCTCTTTTTTGACATCATCTCAAGTT
455 ATCCTCAAACTTCTTTGTGAGAGTCAAAAGTTCTTCTTGTCTC-TTTTTGATATCATCTCGAGTT
*
79122627 CTGAAATTTGGGATTGCAGTCCTATATTTA
519 CTGAAATTTGGGATTGCAGTCCTATATTTT
79122657 CCTCTCC-CAGCTG
1 CCTC-CCTCAGCTG
79122670 TTTTGCTTCA
Statistics
Matches: 1005, Mismatches: 99, Indels: 14
0.90 0.09 0.01
Matches are distributed among these distances:
548 2 0.00
549 996 0.99
550 7 0.01
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (548 bp):
CCTCCCTCAGCTGACCATTCTCTTCGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGG
TTCTTTAGAGAAATGACCTCAAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTCCTG
CAGAACTCTCTGTTGATCCTCGGTCTTGCTGACTATCTCTTCTTTTGCCTTTTCTATCTCAATCA
CATGATTGGAAATAGCTTGAGTTTTACTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGGCTATGC
AGGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACTTGAGTTGATGC
TTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGCGACTCCATGT
CTGCTAGCAGATTGTTGATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTTTCTCATTA
TCCTCAAACTTCTTTGTGAGAGTCAAAAGTTCTTCTTGTCTCTTTTTGATATCATCTCGAGTTCT
GAAATTTGGGATTGCAGTCCTATATTTT
Found at i:79127081 original size:17 final size:18
Alignment explanation
Indices: 79127059--79127093 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
79127049 AATAATTATA
*
79127059 TTTTTT-GTCAATTTAAT
1 TTTTTTAGTAAATTTAAT
79127076 TTTTTTAGTAAATTTAAT
1 TTTTTTAGTAAATTTAAT
79127094 CTTTAACATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.63
Consensus pattern (18 bp):
TTTTTTAGTAAATTTAAT
Found at i:79128260 original size:117 final size:116
Alignment explanation
Indices: 79128120--79128402 Score: 367
Period size: 117 Copynumber: 2.5 Consensus size: 116
79128110 TTGCTTGCGT
* * *
79128120 TCATTGAATCCCTCA-ACTCCCTCAGCTCAGCTTCACAACTGGCAAGCTTCTCTTTAAGCTCACC
1 TCATTGAATCCCT-AGACTTCCTCAGCTCAGCTTCACAAGTAGCAAGCTTCTCTTTAAGCTCACC
* * *
79128184 ATTTTCGTGTTCTAGCCTTGAAATGGATTCAGTCCATGAATTCTTGCCTGCC
65 ATTTTCATGCTCTAGCCTTGAAATGGATTCAGTCCATGAATTCTTGCATGCC
* * * * **
79128236 TCCATTGAATCCCTAGATTTCCTCAGCTCAACTTCACAGGTAGCAAGCTTCTCTTTAAGGTGTCC
1 T-CATTGAATCCCTAGACTTCCTCAGCTCAGCTTCACAAGTAGCAAGCTTCTCTTTAAGCTCACC
* *
79128301 ATTTTCATGCTCTAGCCTTGAAATGGATTCAGTCCATGCATTTTTGCATGCC
65 ATTTTCATGCTCTAGCCTTGAAATGGATTCAGTCCATGAATTCTTGCATGCC
* * *
79128353 T-A--GTATCCCTAGAGTTCCTCACCTCAGCTTCACAAGTAGCAAGCTTCTCT
1 TCATTGAATCCCTAGACTTCCTCAGCTCAGCTTCACAAGTAGCAAGCTTCTCT
79128403 CCGAACTTTC
Statistics
Matches: 146, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
113 43 0.29
115 1 0.01
116 2 0.01
117 100 0.68
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.33
Consensus pattern (116 bp):
TCATTGAATCCCTAGACTTCCTCAGCTCAGCTTCACAAGTAGCAAGCTTCTCTTTAAGCTCACCA
TTTTCATGCTCTAGCCTTGAAATGGATTCAGTCCATGAATTCTTGCATGCC
Found at i:79128425 original size:113 final size:115
Alignment explanation
Indices: 79128139--79128455 Score: 307
Period size: 117 Copynumber: 2.8 Consensus size: 115
79128129 CCCTCAACTC
* * * * ** ** * * *
79128139 CCTCAGCTCAGCTTCACAACTGGCAAGCTTCTCTTTAAGCTCACCATTTTCGTGTTCTAGCCTTG
1 CCTCACCTCAACTTCACAAGTAGCAAGCTTCTCTCGAAGCTGTCCATTATCATGCTCTAGCCTTG
* *
79128204 AAATGGATTCAGTCCATGAATTCTTGCCTGCCTCCATTGAATCCCTAGATTT
66 AAATGGATTCAGTCCATGAATTCTTGCATGCCT-CA-TGAATCCCTAGAGTT
* * ** * *
79128256 CCTCAGCTCAACTTCACAGGTAGCAAGCTTCTCTTTAAGGTGTCCATTTTCATGCTCTAGCCTTG
1 CCTCACCTCAACTTCACAAGTAGCAAGCTTCTCTCGAAGCTGTCCATTATCATGCTCTAGCCTTG
* * *
79128321 AAATGGATTCAGTCCATGCATTTTTGCATGCCT-A-GTATCCCTAGAGTT
66 AAATGGATTCAGTCCATGAATTCTTGCATGCCTCATGAATCCCTAGAGTT
* * * * *
79128369 CCTCACCTCAGCTTCACAAGTAGCAAGCTTCTCTCCGAA-CTTTCTATTATCTTGCTCTAACCTT
1 CCTCACCTCAACTTCACAAGTAGCAAGCTTCTCT-CGAAGCTGTCCATTATCATGCTCTAGCCTT
* * * *
79128433 GAATTCGATTCAGACAATGAATT
65 GAAATGGATTCAGTCCATGAATT
79128456 TCTGGCCGTC
Statistics
Matches: 169, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
113 80 0.47
114 2 0.01
115 1 0.01
117 86 0.51
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (115 bp):
CCTCACCTCAACTTCACAAGTAGCAAGCTTCTCTCGAAGCTGTCCATTATCATGCTCTAGCCTTG
AAATGGATTCAGTCCATGAATTCTTGCATGCCTCATGAATCCCTAGAGTT
Found at i:79128510 original size:25 final size:25
Alignment explanation
Indices: 79128482--79128531 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
79128472 CAATTCCTTA
79128482 ACTTCCTCATCTCAACTTCACCGGT
1 ACTTCCTCATCTCAACTTCACCGGT
* *
79128507 ACTTCCTTATCTCAGCTTCACCGGT
1 ACTTCCTCATCTCAACTTCACCGGT
79128532 GGCAACCTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.18, C:0.38, G:0.10, T:0.34
Consensus pattern (25 bp):
ACTTCCTCATCTCAACTTCACCGGT
Found at i:79132651 original size:24 final size:25
Alignment explanation
Indices: 79132602--79132655 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
79132592 ATGAAAGTTT
**
79132602 TTTTTAAAAAAATAATGTGTTATAA
1 TTTTTAAAAAAATAATCCGTTATAA
79132627 TTTTTAAAAAAATCAA-CCGTT-TAA
1 TTTTTAAAAAAAT-AATCCGTTATAA
79132651 TTTTT
1 TTTTT
79132656 TTTATATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 8 0.31
25 16 0.62
26 2 0.08
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.46
Consensus pattern (25 bp):
TTTTTAAAAAAATAATCCGTTATAA
Found at i:79140642 original size:43 final size:44
Alignment explanation
Indices: 79140565--79140653 Score: 144
Period size: 43 Copynumber: 2.0 Consensus size: 44
79140555 GAGGTACCTA
*
79140565 AAACAAATTATAAATAATATGATTAAATCAACCAATTACGTGTT
1 AAACAAATTATAAATAATATGATTAAATCAACCAATTACATGTT
* *
79140609 AAACAAATTATAAGTAAT-TGATTAAATCTACCAATTACATGTT
1 AAACAAATTATAAATAATATGATTAAATCAACCAATTACATGTT
79140652 AA
1 AA
79140654 TTTTGGAAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 25 0.60
44 17 0.40
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (44 bp):
AAACAAATTATAAATAATATGATTAAATCAACCAATTACATGTT
Found at i:79145850 original size:20 final size:20
Alignment explanation
Indices: 79145825--79145862 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
79145815 TTTATAGTTA
79145825 AAATTTTGTT-TTAATAATTT
1 AAATTTT-TTCTTAATAATTT
79145845 AAATTTTTTCTTAATAAT
1 AAATTTTTTCTTAATAAT
79145863 AATTATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (20 bp):
AAATTTTTTCTTAATAATTT
Found at i:79147618 original size:27 final size:27
Alignment explanation
Indices: 79147588--79147654 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 27
79147578 TAATTTTACC
*
79147588 TCTAAACTATTTTTTTTCA-TTTAAGTA
1 TCTAAACTATTTTTTCTCACTTTAA-TA
* * *
79147615 TCTAATCT-TTTTATCTCACTTTGATA
1 TCTAAACTATTTTTTCTCACTTTAATA
*
79147641 CCTAAACTATTTTT
1 TCTAAACTATTTTT
79147655 CATTACCTAA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
26 16 0.52
27 15 0.48
ACGTcount: A:0.27, C:0.16, G:0.03, T:0.54
Consensus pattern (27 bp):
TCTAAACTATTTTTTCTCACTTTAATA
Found at i:79148602 original size:22 final size:22
Alignment explanation
Indices: 79148577--79148618 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
79148567 GGATTGAAAT
79148577 TAAAT-TATAAATTTTATTATAA
1 TAAATATAT-AATTTTATTATAA
79148599 TAAATATATAATTTTATTAT
1 TAAATATATAATTTTATTAT
79148619 TTTAATAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TAAATATATAATTTTATTATAA
Found at i:79148647 original size:17 final size:16
Alignment explanation
Indices: 79148605--79148647 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
79148595 ATAATAAATA
79148605 TATAAT-TTTATTATT
1 TATAATATTTATTATT
79148620 T-TAATAGTTTATATATT
1 TATAATA-TTTAT-TATT
79148637 TATAATATTTA
1 TATAATATTTA
79148648 AGGAATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 4 0.17
15 1 0.04
16 5 0.21
17 9 0.38
18 5 0.21
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATAATATTTATTATT
Found at i:79155413 original size:25 final size:24
Alignment explanation
Indices: 79155371--79155430 Score: 84
Period size: 25 Copynumber: 2.5 Consensus size: 24
79155361 TTAAAATCTA
*
79155371 ATTAAATAAAAAATTTATATTAAT
1 ATTAAATAAAAAAATTATATTAAT
* *
79155395 ATTATATAAAAATAATTATATTATT
1 ATTAAATAAAAA-AATTATATTAAT
79155420 ATTAAATAAAA
1 ATTAAATAAAA
79155431 TAAAAAGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 11 0.35
25 20 0.65
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
ATTAAATAAAAAAATTATATTAAT
Found at i:79156245 original size:26 final size:27
Alignment explanation
Indices: 79156209--79156272 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
79156199 AAAATATTTG
79156209 TTTTTAATTTTAGTCCATA-TTATCATGA
1 TTTTT-ATTTTA-TCCATATTTATCATGA
** *
79156237 -TTTTATTTTATTTATATTTATCGTGA
1 TTTTTATTTTATCCATATTTATCATGA
79156263 TTTTTATTTT
1 TTTTTATTTT
79156273 GTCAGTTGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 4 0.13
26 14 0.45
27 13 0.42
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.64
Consensus pattern (27 bp):
TTTTTATTTTATCCATATTTATCATGA
Found at i:79157029 original size:18 final size:17
Alignment explanation
Indices: 79157008--79157055 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
79156998 AACATTTCAT
79157008 AAATTTATGAAATATTAA
1 AAATTTAT-AAATATTAA
*
79157026 AAATAATATAAATATTAA
1 AAAT-TTATAAATATTAA
*
79157044 AATTTTATAAAT
1 AAATTTATAAAT
79157056 GATGATAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 7 0.27
18 16 0.62
19 3 0.12
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
AAATTTATAAATATTAA
Found at i:79160705 original size:30 final size:30
Alignment explanation
Indices: 79160665--79160737 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 30
79160655 AATTATATAA
*
79160665 AAACTTTAATTTGGTGCAATTATATACATG
1 AAACTTTAATTTGGTGCAAATATATACATG
* ** * *
79160695 AAACTCTAATTATGGTTTAAATGTATACTTG
1 AAACTTTAATT-TGGTGCAAATATATACATG
79160726 AAACTTTAATTT
1 AAACTTTAATTT
79160738 TGATTTAATC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
30 11 0.31
31 24 0.69
ACGTcount: A:0.37, C:0.10, G:0.11, T:0.42
Consensus pattern (30 bp):
AAACTTTAATTTGGTGCAAATATATACATG
Found at i:79160728 original size:31 final size:31
Alignment explanation
Indices: 79160687--79160745 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
79160677 GGTGCAATTA
*
79160687 TATACATGAAACTCTAATTATGGTTTAAATG
1 TATACATGAAACTCTAATTATGATTTAAATG
* * *
79160718 TATACTTGAAACTTTAATTTTGATTTAA
1 TATACATGAAACTCTAATTATGATTTAA
79160746 TCATACATAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.44
Consensus pattern (31 bp):
TATACATGAAACTCTAATTATGATTTAAATG
Found at i:79160979 original size:31 final size:29
Alignment explanation
Indices: 79160878--79160985 Score: 162
Period size: 29 Copynumber: 3.6 Consensus size: 29
79160868 GAATTGGATT
*
79160878 AAATCAAAATTTCATGTATACAATTGCACA
1 AAATC-AAAGTTCATGTATACAATTGCACA
79160908 AAATCAAAGTTCATGTATACAATTGCACA
1 AAATCAAAGTTCATGTATACAATTGCACA
79160937 AAATCAAAGTTCATGTATACAATTGCACA
1 AAATCAAAGTTCATGTATACAATTGCACA
* *
79160966 TTGAATCATAGTTCATGTAT
1 --AAATCAAAGTTCATGTAT
79160986 TAAATTTGAT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
29 52 0.71
30 5 0.07
31 16 0.22
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (29 bp):
AAATCAAAGTTCATGTATACAATTGCACA
Found at i:79161038 original size:22 final size:20
Alignment explanation
Indices: 79161005--79161057 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 20
79160995 TATTTATCCC
79161005 ATTATTAAATA-TTAAAATAAT
1 ATTA-TAAATATTTAAAA-AAT
79161026 ATAATATAAATATTTAAAAAAT
1 AT--TATAAATATTTAAAAAAT
79161048 ATTATAAATA
1 ATTATAAATA
79161058 ACATGGACAG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
20 8 0.28
21 2 0.07
22 11 0.38
23 8 0.28
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTATAAATATTTAAAAAAT
Found at i:79163834 original size:13 final size:13
Alignment explanation
Indices: 79163816--79163843 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
79163806 AATTTTCTTA
79163816 AAAAAAAATCTAT
1 AAAAAAAATCTAT
79163829 AAAAAAAATCTAT
1 AAAAAAAATCTAT
79163842 AA
1 AA
79163844 GTTATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAAAAAATCTAT
Found at i:79166031 original size:25 final size:25
Alignment explanation
Indices: 79166003--79166051 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
79165993 TCATTAATAT
79166003 CTTAACTTT-ACTGTTTCA-AGTAAAG
1 CTTAA-TTTGACTGTTT-ATAGTAAAG
79166028 CTTAATTTGACTGTTTATAGTAAA
1 CTTAATTTGACTGTTTATAGTAAA
79166052 AGACACTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (25 bp):
CTTAATTTGACTGTTTATAGTAAAG
Found at i:79174163 original size:93 final size:92
Alignment explanation
Indices: 79174004--79174189 Score: 345
Period size: 93 Copynumber: 2.0 Consensus size: 92
79173994 AATGCTCTCC
*
79174004 TGCAAATCTAGGTTTGTCCTCTCAAATTTCATGAATGAAAGGCTTCAATTCTCATTTCACGGTTG
1 TGCAAATCTAGGTTTGCCCTCTCAAATTTCATGAATGAAAGGCTTCAATTCTCATTTCACGGTTG
79174069 CTTTAATATTATTTTTATCTCCCTTGTT
66 CTTTAATATTA-TTTTATCTCCCTTGTT
*
79174097 TGCAAATCTAGGTTTGCCCTCTCAAGTTTCATGAATGAAAGGCTTCAATTCTCATTTCACGGTTG
1 TGCAAATCTAGGTTTGCCCTCTCAAATTTCATGAATGAAAGGCTTCAATTCTCATTTCACGGTTG
79174162 CTTTAATATTATTTTATCTCCCTTGTT
66 CTTTAATATTATTTTATCTCCCTTGTT
79174189 T
1 T
79174190 TTAGCTCCTA
Statistics
Matches: 91, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
92 17 0.19
93 74 0.81
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.44
Consensus pattern (92 bp):
TGCAAATCTAGGTTTGCCCTCTCAAATTTCATGAATGAAAGGCTTCAATTCTCATTTCACGGTTG
CTTTAATATTATTTTATCTCCCTTGTT
Found at i:79180228 original size:20 final size:20
Alignment explanation
Indices: 79180205--79180254 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
79180195 AAACCCAAAT
79180205 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
*
79180225 TAAAATTCTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
79180245 TAAGAATACT
1 TAA-AATACT
79180255 GATGTGACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 22 0.81
21 5 0.19
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.28
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGGA
Found at i:79184345 original size:73 final size:73
Alignment explanation
Indices: 79184261--79184408 Score: 278
Period size: 73 Copynumber: 2.0 Consensus size: 73
79184251 GCTAAATTCA
*
79184261 TAGGTCAAATAATAATAAAAATTTGACTGAAATAAGAGTCATACTTAACATCAGGTGATCTCTTA
1 TAGGTCAAATAATAATAAAAATTTGACTGAAATAAGAGTCATACTTAACATCAAGTGATCTCTTA
79184326 ATTATATT
66 ATTATATT
*
79184334 TAGGTCAAATAATAATAAAAATTTGATTGAAATAAGAGTCATACTTAACATCAAGTGATCTCTTA
1 TAGGTCAAATAATAATAAAAATTTGACTGAAATAAGAGTCATACTTAACATCAAGTGATCTCTTA
79184399 ATTATATT
66 ATTATATT
79184407 TA
1 TA
79184409 TAGCACTTGA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.35
Consensus pattern (73 bp):
TAGGTCAAATAATAATAAAAATTTGACTGAAATAAGAGTCATACTTAACATCAAGTGATCTCTTA
ATTATATT
Found at i:79186024 original size:2 final size:2
Alignment explanation
Indices: 79186017--79186052 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
79186007 AATTTGAAAT
79186017 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
79186053 ACCATTAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:79192254 original size:35 final size:35
Alignment explanation
Indices: 79192215--79192286 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
79192205 TAAATCTAGT
*
79192215 TAAATTTTACAATTTAAATAACAGATTGATATAAA
1 TAAATTTTACAATTTAAATAACAGAGTGATATAAA
*
79192250 TAAATTTTACAATTTAAATAATAGAGTGATATAAA
1 TAAATTTTACAATTTAAATAACAGAGTGATATAAA
79192285 TA
1 TA
79192287 CCATCTACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (35 bp):
TAAATTTTACAATTTAAATAACAGAGTGATATAAA
Found at i:79192269 original size:18 final size:18
Alignment explanation
Indices: 79192215--79192270 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
79192205 TAAATCTAGT
79192215 TAAATTTTACAATTTAAA
1 TAAATTTTACAATTTAAA
** * *
79192233 TAACAGATT--GATATAAA
1 TAA-ATTTTACAATTTAAA
79192250 TAAATTTTACAATTTAAA
1 TAAATTTTACAATTTAAA
79192268 TAA
1 TAA
79192271 TAGAGTGATA
Statistics
Matches: 27, Mismatches: 8, Indels: 6
0.66 0.20 0.15
Matches are distributed among these distances:
16 3 0.11
17 9 0.33
18 12 0.44
19 3 0.11
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.39
Consensus pattern (18 bp):
TAAATTTTACAATTTAAA
Found at i:79192296 original size:35 final size:35
Alignment explanation
Indices: 79192215--79192304 Score: 110
Period size: 35 Copynumber: 2.6 Consensus size: 35
79192205 TAAATCTAGT
* *
79192215 TAAATTTTACAATTTAAATAACAGATTGATATAAA
1 TAAATTCTACAATTTAAATAACAGAGTGATATAAA
* *
79192250 TAAATTTTACAATTTAAATAATAGAGTGATATAAA
1 TAAATTCTACAATTTAAATAACAGAGTGATATAAA
* *
79192285 TACCA-TCTACAATTCAAATA
1 TA-AATTCTACAATTTAAATA
79192305 TCATATTGGT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
35 48 0.98
36 1 0.02
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.36
Consensus pattern (35 bp):
TAAATTCTACAATTTAAATAACAGAGTGATATAAA
Found at i:79206442 original size:95 final size:94
Alignment explanation
Indices: 79206279--79206464 Score: 336
Period size: 95 Copynumber: 2.0 Consensus size: 94
79206269 CAAGCCTGAA
79206279 CTCTTCGGTGGTTTGCAAGTATTAACCCTTCTCTAATTACTCATATCGTAACTTTAATTAAAGAG
1 CTCTTCGGTGGTTTGCAAGTATTAACCCTTCTCTAATTACTCATATCGTAACTTTAATTAAAGAG
*
79206344 CAGAATCTAAAAGAGTGTTGCATGGCAAAT
66 CAGAATCTAAAAGAGTG-TCCATGGCAAAT
* *
79206374 CTCTTCGGTGGTTTGCAAGTATTAACCCTTCTCTAATTACTCATATCGTAGCTTTAATTAAAGTG
1 CTCTTCGGTGGTTTGCAAGTATTAACCCTTCTCTAATTACTCATATCGTAACTTTAATTAAAGAG
79206439 CAGAATCTAAAAGAGTGTCCATGGCA
66 CAGAATCTAAAAGAGTGTCCATGGCA
79206465 TTTGCCATGC
Statistics
Matches: 88, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
94 8 0.09
95 80 0.91
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (94 bp):
CTCTTCGGTGGTTTGCAAGTATTAACCCTTCTCTAATTACTCATATCGTAACTTTAATTAAAGAG
CAGAATCTAAAAGAGTGTCCATGGCAAAT
Found at i:79210143 original size:19 final size:19
Alignment explanation
Indices: 79210119--79210161 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
79210109 TGGTGGCGAC
*
79210119 TCCCATTCTTTATTTTCAT
1 TCCCATTCTTCATTTTCAT
79210138 TCCCATTCTTCATTTTCAT
1 TCCCATTCTTCATTTTCAT
79210157 TCCCA
1 TCCCA
79210162 AAATCTAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.16, C:0.33, G:0.00, T:0.51
Consensus pattern (19 bp):
TCCCATTCTTCATTTTCAT
Found at i:79213296 original size:16 final size:16
Alignment explanation
Indices: 79213275--79213309 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
79213265 GGGAGTGCAC
79213275 ACACTTTTAAGATTAA
1 ACACTTTTAAGATTAA
79213291 ACACTTTTAAGATTAA
1 ACACTTTTAAGATTAA
79213307 ACA
1 ACA
79213310 ATCAACTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.34
Consensus pattern (16 bp):
ACACTTTTAAGATTAA
Found at i:79214082 original size:129 final size:129
Alignment explanation
Indices: 79213851--79214110 Score: 403
Period size: 129 Copynumber: 2.0 Consensus size: 129
79213841 TACGTCCTCC
* * * * *
79213851 TTCTACATTAGCAACAATTTTCATTTCAATCGAGCTAAGACTCAATCGACAACTTTATAAAAATA
1 TTCTACATTAGCAACAATTTTCATGTCAATCGAACTAAAACTCAATAGACAACCTTATAAAAATA
* * *
79213916 TTCATTTCTCAATTTAAACACTCATCAAATTTAAAATTTCCTTTAAAACTGTAATTTAAGTTAT
66 TTAAATTCTCAATCTAAACACTCATCAAATTTAAAATTTCCTTTAAAACTGTAATTTAAGTTAT
* * * *
79213980 TTCTACATTAGTAACAATTTTCATGTCAATCGAACTAAAACTCAATAGACAACCTTGTGAAAATC
1 TTCTACATTAGCAACAATTTTCATGTCAATCGAACTAAAACTCAATAGACAACCTTATAAAAATA
*
79214045 TTAAATTCTCAATCTAAACACTCATCAAATTTGAAATTTCCTTTAAAACTGTAATTTAAGTTAT
66 TTAAATTCTCAATCTAAACACTCATCAAATTTAAAATTTCCTTTAAAACTGTAATTTAAGTTAT
79214109 TT
1 TT
79214111 AATTTAAAAA
Statistics
Matches: 118, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
129 118 1.00
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.37
Consensus pattern (129 bp):
TTCTACATTAGCAACAATTTTCATGTCAATCGAACTAAAACTCAATAGACAACCTTATAAAAATA
TTAAATTCTCAATCTAAACACTCATCAAATTTAAAATTTCCTTTAAAACTGTAATTTAAGTTAT
Found at i:79214747 original size:28 final size:28
Alignment explanation
Indices: 79214701--79214761 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
79214691 TTCAATTAAT
*
79214701 AAAATAATTAAATAAATAA-ATAAAACAA
1 AAAATAATTAAACAAATAAGATAAAA-AA
* * *
79214729 AAAATAATTGAACATATAAGATACAAAA
1 AAAATAATTAAACAAATAAGATAAAAAA
79214757 AAAAT
1 AAAAT
79214762 CATATTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 23 0.82
29 5 0.18
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.21
Consensus pattern (28 bp):
AAAATAATTAAACAAATAAGATAAAAAA
Found at i:79214999 original size:31 final size:31
Alignment explanation
Indices: 79214959--79215033 Score: 78
Period size: 32 Copynumber: 2.4 Consensus size: 31
79214949 AAGTACCACC
* * *
79214959 TTAAGAAAAAGTCTCAAGTTTAAATGCCAAA
1 TTAAAAAAAAATCTCAAGTTTAAATACCAAA
* * *
79214990 TTAAAAAAAAAATGTCAAGTTTAGATACTAAA
1 TT-AAAAAAAAATCTCAAGTTTAAATACCAAA
79215022 TTAAACAAAAAA
1 TTAAA-AAAAAA
79215034 AATTAAATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
31 5 0.14
32 31 0.86
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.25
Consensus pattern (31 bp):
TTAAAAAAAAATCTCAAGTTTAAATACCAAA
Found at i:79215008 original size:32 final size:33
Alignment explanation
Indices: 79214972--79215034 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
79214962 AGAAAAAGTC
*
79214972 TCAAGTTTAAATGCCAAATTAAA-AAAAAAATG
1 TCAAGTTTAAATACCAAATTAAACAAAAAAATG
* *
79215004 TCAAGTTTAGATACTAAATTAAACAAAAAAA
1 TCAAGTTTAAATACCAAATTAAACAAAAAAA
79215035 ATTAAATATC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 20 0.74
33 7 0.26
ACGTcount: A:0.57, C:0.10, G:0.08, T:0.25
Consensus pattern (33 bp):
TCAAGTTTAAATACCAAATTAAACAAAAAAATG
Found at i:79218830 original size:2 final size:2
Alignment explanation
Indices: 79218823--79218849 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
79218813 TATTGATTGT
79218823 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
79218850 TTGATTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:79220820 original size:53 final size:53
Alignment explanation
Indices: 79220748--79220889 Score: 214
Period size: 53 Copynumber: 2.7 Consensus size: 53
79220738 TCCACATATC
* *
79220748 ATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTATCACATT
1 ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTATCACATT
*
79220801 ATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTATCACATT
1 ATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATT
** *
79220854 GCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 ATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
79220890 GCACACTTGT
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
52 1 0.01
53 81 0.99
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (53 bp):
ATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATT
Found at i:79229762 original size:11 final size:9
Alignment explanation
Indices: 79229638--79229773 Score: 58
Period size: 10 Copynumber: 13.9 Consensus size: 9
79229628 TTTCCGAGGC
79229638 ATTATAAAAA
1 ATTAT-AAAA
79229648 ATTCATAAAA
1 ATT-ATAAAA
*
79229658 ACTTATAAAT
1 A-TTATAAAA
79229668 A-TATAAATA
1 ATTATAAA-A
* *
79229677 TTTCTAATAA
1 ATTATAA-AA
*
79229687 ATGATACAAA
1 ATTATA-AAA
* *
79229697 GTTGTAAAA
1 ATTATAAAA
*
79229706 ATTATTAAAC
1 ATTA-TAAAA
* *
79229716 ATGACAAAA
1 ATTATAAAA
*
79229725 GCTTATAAAAA
1 -ATTAT-AAAA
*
79229736 ATTCTAGAAA
1 ATTATA-AAA
79229746 ATTATACAAA
1 ATTATA-AAA
79229756 ATATATAAAA
1 AT-TATAAAA
79229766 ATTATAAA
1 ATTATAAA
79229774 TAAAATCATT
Statistics
Matches: 92, Mismatches: 23, Indels: 23
0.67 0.17 0.17
Matches are distributed among these distances:
8 6 0.07
9 15 0.16
10 57 0.62
11 14 0.15
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.32
Consensus pattern (9 bp):
ATTATAAAA
Found at i:79242244 original size:18 final size:17
Alignment explanation
Indices: 79242193--79242244 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
79242183 TTTCTTTTTC
79242193 TTCCTATTTTTCTAATAG
1 TTCCTATTTTT-TAATAG
* * *
79242211 TTCGTGTCTTTCTAATAG
1 TTCCTAT-TTTTTAATAG
79242229 TTCCTATTTTATTAAT
1 TTCCTATTTT-TTAAT
79242245 TTATTTATAT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.21, C:0.15, G:0.08, T:0.56
Consensus pattern (17 bp):
TTCCTATTTTTTAATAG
Found at i:79242909 original size:57 final size:57
Alignment explanation
Indices: 79242826--79242937 Score: 170
Period size: 57 Copynumber: 2.0 Consensus size: 57
79242816 ATTATTGTGG
* *
79242826 GCATGGGGTCCACTCCTTTGAGCTTCAAGTCCTTAAATTGGGCCGAAATCTTCTTTA
1 GCATGGGCTCCACTCATTTGAGCTTCAAGTCCTTAAATTGGGCCGAAATCTTCTTTA
* * * *
79242883 GCATGGGCTCTACTCATTTGGGCTTCAAGTTCTTAAATTGGGCTGAAATCTTCTT
1 GCATGGGCTCCACTCATTTGAGCTTCAAGTCCTTAAATTGGGCCGAAATCTTCTT
79242938 CATTGAAATA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (57 bp):
GCATGGGCTCCACTCATTTGAGCTTCAAGTCCTTAAATTGGGCCGAAATCTTCTTTA
Found at i:79245677 original size:24 final size:24
Alignment explanation
Indices: 79245650--79245705 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
79245640 AATGTTCTTT
79245650 TATTAATACT-TTATATTACTAAAA
1 TATTAATACTCTTATATTA-TAAAA
*
79245674 TATTCATA-TCTTATATTATAAAA
1 TATTAATACTCTTATATTATAAAA
*
79245697 T-TTATTACT
1 TATTAATACT
79245706 AAAAACTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
22 4 0.15
23 8 0.30
24 15 0.56
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (24 bp):
TATTAATACTCTTATATTATAAAA
Found at i:79261800 original size:17 final size:18
Alignment explanation
Indices: 79261778--79261812 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
79261768 GATGATAGAT
79261778 TTTGTAA-AAGAATTTTA
1 TTTGTAATAAGAATTTTA
*
79261795 TTTGTAATAAGATTTTTA
1 TTTGTAATAAGAATTTTA
79261813 AAATTCTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGTAATAAGAATTTTA
Found at i:79262406 original size:23 final size:23
Alignment explanation
Indices: 79262376--79262423 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
79262366 ATGTGTTGTT
79262376 AAGTGATGATTTAGATTTTTTTG
1 AAGTGATGATTTAGATTTTTTTG
*
79262399 AAGTGATGATTTGGATTTTTTTG
1 AAGTGATGATTTAGATTTTTTTG
79262422 AA
1 AA
79262424 ATTTTCTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (23 bp):
AAGTGATGATTTAGATTTTTTTG
Found at i:79263256 original size:19 final size:18
Alignment explanation
Indices: 79263232--79263289 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 18
79263222 AAATGTTGTT
79263232 TTTAATAATTTCTTATAAA
1 TTTAATAATTT-TTATAAA
* *
79263251 TTTAATAGTTTTTAAATAA
1 TTTAATAATTTTTATA-AA
79263270 TTTATATAATGTTTTTATAA
1 TTTA-ATAA--TTTTTATAA
79263290 TTATTTAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
18 4 0.13
19 16 0.52
20 3 0.10
21 1 0.03
22 7 0.23
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTAATAATTTTTATAAA
Found at i:79263279 original size:23 final size:23
Alignment explanation
Indices: 79263253--79263296 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
79263243 CTTATAAATT
79263253 TAATAGTTTTTA-AATAATTTATA
1 TAAT-GTTTTTATAATAATTTATA
*
79263276 TAATGTTTTTATAATTATTTA
1 TAATGTTTTTATAATAATTTA
79263297 AAAATAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (23 bp):
TAATGTTTTTATAATAATTTATA
Found at i:79263359 original size:15 final size:17
Alignment explanation
Indices: 79263330--79263374 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 17
79263320 ATTGTTTTTA
79263330 TTTAAATA--ATT-ATT
1 TTTAAATATTATTAATT
79263344 TTTAAA-ATT-TTAATT
1 TTTAAATATTATTAATT
79263359 TTTAAATATTATTAAT
1 TTTAAATATTATTAAT
79263375 GTGATAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 1 0.04
14 8 0.31
15 9 0.35
16 3 0.12
17 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTAAATATTATTAATT
Found at i:79279576 original size:19 final size:19
Alignment explanation
Indices: 79279554--79279590 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
79279544 TTTATAATTT
79279554 TATATATTAT-TTTTAAATG
1 TATAT-TTATATTTTAAATG
79279573 TATATTTATATTTTAAAT
1 TATATTTATATTTTAAAT
79279591 ATGTGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
TATATTTATATTTTAAATG
Found at i:79299923 original size:14 final size:15
Alignment explanation
Indices: 79299904--79299937 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
79299894 TGTTTGAGAT
79299904 ATATTTAAACAT-AA
1 ATATTTAAACATGAA
*
79299918 ATATTTAAATATGAA
1 ATATTTAAACATGAA
79299933 ATATT
1 ATATT
79299938 AAAAAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (15 bp):
ATATTTAAACATGAA
Found at i:79303582 original size:14 final size:16
Alignment explanation
Indices: 79303557--79303589 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
79303547 AATATATTCA
79303557 TTATATATAATA-AAT
1 TTATATATAATACAAT
79303572 TTATA-ATAATACAAT
1 TTATATATAATACAAT
79303587 TTA
1 TTA
79303590 AATTAACCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TTATATATAATACAAT
Found at i:79312761 original size:46 final size:46
Alignment explanation
Indices: 79312710--79313113 Score: 562
Period size: 46 Copynumber: 8.8 Consensus size: 46
79312700 GTGTGCTCTC
* *
79312710 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
79312756 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
79312802 TGATATGGAAA-GTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATAT-GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
79312848 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
79312894 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * *
79312940 TGATATTAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * *
79312986 TGACATGAAATGAGTAAGACCATGGTTGAAAGATATCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
** * * * *
79313032 TGA-CCGAAAATGAATAAGACTAAGGTTGAAAGATACCATGGCAACA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * * *
79313078 TGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
79313114 TATGACATCA
Statistics
Matches: 331, Mismatches: 23, Indels: 8
0.91 0.06 0.02
Matches are distributed among these distances:
45 5 0.02
46 322 0.97
47 4 0.01
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:79314346 original size:15 final size:15
Alignment explanation
Indices: 79314326--79314355 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
79314316 TAGGGCTAAA
79314326 TTATAAAGTTACAAT
1 TTATAAAGTTACAAT
*
79314341 TTATAAGGTTACAAT
1 TTATAAAGTTACAAT
79314356 ATGTTTCAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (15 bp):
TTATAAAGTTACAAT
Found at i:79318305 original size:18 final size:19
Alignment explanation
Indices: 79318260--79318312 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 19
79318250 TACTTTTATT
79318260 ATTTAA-AAACTAAAAATGC
1 ATTTAATAAA-TAAAAATGC
79318279 ATTTAATAAATAAAAATG-
1 ATTTAATAAATAAAAATGC
* *
79318297 TTTTTATAAATAAAAA
1 ATTTAATAAATAAAAA
79318313 AGACAAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
18 14 0.45
19 14 0.45
20 3 0.10
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (19 bp):
ATTTAATAAATAAAAATGC
Found at i:79318559 original size:20 final size:22
Alignment explanation
Indices: 79318534--79318574 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
79318524 TTATTTTTAA
79318534 TAATTTAA-TAT-TTATATTTT
1 TAATTTAATTATATTATATTTT
79318554 TAATTTAATTATATTATATTT
1 TAATTTAATTATATTATATTT
79318575 ATTATACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
21 3 0.16
22 8 0.42
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
TAATTTAATTATATTATATTTT
Found at i:79318567 original size:23 final size:22
Alignment explanation
Indices: 79318525--79318574 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 22
79318515 TTGGATAATT
79318525 TATTTTTAATAATTTAATATTTA
1 TATTTTTAATAATTTAATA-TTA
79318548 TATTTTTAATTTAA-TT-ATATTA
1 TATTTTTAA--TAATTTAATATTA
79318570 TATTT
1 TATTT
79318575 ATTATACTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 8 0.32
23 12 0.48
24 2 0.08
25 3 0.12
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TATTTTTAATAATTTAATATTA
Found at i:79319499 original size:30 final size:28
Alignment explanation
Indices: 79319465--79319523 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 28
79319455 GGCTTTGTAA
79319465 TACAAGTTTTTTTAACATATTAATAATTCT
1 TACAAG-TTTTTT-ACATATTAATAATTCT
*
79319495 TACAAGTTTTTTATATATTAATAATTCT
1 TACAAGTTTTTTACATATTAATAATTCT
79319523 T
1 T
79319524 TTTTAAACGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 16 0.57
29 6 0.21
30 6 0.21
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.53
Consensus pattern (28 bp):
TACAAGTTTTTTACATATTAATAATTCT
Found at i:79320652 original size:12 final size:12
Alignment explanation
Indices: 79320635--79320667 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
79320625 CGGCTCGCCC
79320635 ATATTAATTTTT
1 ATATTAATTTTT
*
79320647 ATATTATTTTTT
1 ATATTAATTTTT
79320659 ATA-TAATTT
1 ATATTAATTT
79320668 AAAAAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:79320828 original size:30 final size:30
Alignment explanation
Indices: 79320792--79320854 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
79320782 ACTTCAGAAT
79320792 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
79320822 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
79320852 CAA
1 CAA
79320855 TAAAATAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:79320909 original size:22 final size:22
Alignment explanation
Indices: 79320884--79320925 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
79320874 TATCCAAATA
79320884 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
79320906 ATAATAGTAAAATGGTAGCA
1 ATAACAATAAAATAGTAGCA
79320926 GAATAGGGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.10, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:79324001 original size:30 final size:30
Alignment explanation
Indices: 79323967--79324025 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
79323957 ATGAGATAGG
79323967 TTCTAACTTGAACATTAAATGTCCGAGTCA
1 TTCTAACTTGAACATTAAATGTCCGAGTCA
79323997 TTCTAACTTGAACATTAAATGTCCGAGTC
1 TTCTAACTTGAACATTAAATGTCCGAGTC
79324026 TGGCCTAGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (30 bp):
TTCTAACTTGAACATTAAATGTCCGAGTCA
Found at i:79324617 original size:21 final size:21
Alignment explanation
Indices: 79324579--79324618 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
79324569 GCTCAAAGCT
*
79324579 TTAATATAATATGTGTATAAA
1 TTAATATAATATGCGTATAAA
79324600 TTAATTATAATAT-CGTATA
1 TTAA-TATAATATGCGTATA
79324619 TTTGTCATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (21 bp):
TTAATATAATATGCGTATAAA
Found at i:79336429 original size:3 final size:3
Alignment explanation
Indices: 79336421--79336448 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
79336411 ACCCATGAAT
79336421 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
79336449 ATTAGCCCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:79339774 original size:19 final size:17
Alignment explanation
Indices: 79339750--79339784 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
79339740 ATTATTTAAA
79339750 TATTATATAATTCTTGTTT
1 TATTAT-TAATT-TTGTTT
79339769 TATTATTAATTTTGTT
1 TATTATTAATTTTGTT
79339785 AGTATTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.66
Consensus pattern (17 bp):
TATTATTAATTTTGTTT
Found at i:79339790 original size:18 final size:19
Alignment explanation
Indices: 79339750--79339790 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
79339740 ATTATTTAAA
*
79339750 TATTATATAATTCTTGTTT
1 TATTATATAATTCTTGTTG
79339769 TATTAT-TAATT-TTGTTAG
1 TATTATATAATTCTTGTT-G
79339787 TATT
1 TATT
79339791 TTAGAGACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 5 0.25
18 9 0.45
19 6 0.30
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (19 bp):
TATTATATAATTCTTGTTG
Found at i:79344378 original size:9 final size:9
Alignment explanation
Indices: 79344364--79344404 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
79344354 TTCTTATATT
79344364 TTTTTTTAC
1 TTTTTTTAC
79344373 TTTTTTTAC
1 TTTTTTTAC
79344382 TTTTTTTAC
1 TTTTTTTAC
79344391 -TTTTTTA-
1 TTTTTTTAC
79344398 TTTTTTT
1 TTTTTTT
79344405 CTTATATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.42
9 18 0.58
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:79344414 original size:18 final size:18
Alignment explanation
Indices: 79344353--79344471 Score: 55
Period size: 18 Copynumber: 7.0 Consensus size: 18
79344343 GATTTGTCAG
79344353 TTTCTTATA-TTT-TTTT
1 TTTCTTATATTTTATTTT
*
79344369 TTACTT-T-TTTTACTTTT
1 TTTCTTATATTTTA-TTTT
79344386 TTTAC-T-T-TTTTATTTT
1 TTT-CTTATATTTTATTTT
* * *
79344402 TTTCTTATATTTTGTCTC
1 TTTCTTATATTTTATTTT
* *
79344420 TTTCTTAGATTTT-TTCT
1 TTTCTTATATTTTATTTT
79344437 TTT-TTA-AGTTTTATATTAT
1 TTTCTTATA-TTTTAT-TT-T
79344456 TTTCTTA-A-TTTATTTT
1 TTTCTTATATTTTATTTT
79344472 ACTTATTTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
15 6 0.07
16 21 0.26
17 21 0.26
18 25 0.31
19 4 0.05
20 4 0.05
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTCTTATATTTTATTTT
Found at i:79344497 original size:18 final size:17
Alignment explanation
Indices: 79344446--79344493 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
79344436 TTTTTTAAGT
*
79344446 TTTATATTATTTTCTTAA
1 TTTATATTATTAT-TTAA
*
79344464 TTTATTTTACTTATTTAA
1 TTTATATTA-TTATTTAA
79344482 TTTATATTATTA
1 TTTATATTATTA
79344494 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATATTATTATTTAA
Found at i:79344538 original size:21 final size:21
Alignment explanation
Indices: 79344510--79344563 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
79344500 AAAAAATTTG
79344510 TAATATATATTTAAAATGTTTTA
1 TAATAT-TATTTAAAAT-TTTTA
*
79344533 TAATATTTTTTAAAATTTTTA
1 TAATATTATTTAAAATTTTTA
*
79344554 -ATTATTATTT
1 TAATATTATTT
79344564 TTAAAAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 8 0.29
21 5 0.18
22 9 0.32
23 6 0.21
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TAATATTATTTAAAATTTTTA
Found at i:79344564 original size:21 final size:20
Alignment explanation
Indices: 79344502--79344569 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 20
79344492 TAATTTTAAA
*
79344502 AAAATTTGTAATA-TATATTT
1 AAAATTTTTAATATTAT-TTT
79344522 AAAATGTTTTATAATATT-TTTT
1 AAAA--TTTT-TAATATTATTTT
79344544 AAAATTTTTAATTATTATTTTT
1 AAAATTTTTAA-TATTA-TTTT
79344566 AAAA
1 AAAA
79344570 ATATTTTTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
19 3 0.08
20 12 0.30
22 18 0.45
23 6 0.15
24 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
AAAATTTTTAATATTATTTT
Found at i:79344570 original size:23 final size:23
Alignment explanation
Indices: 79344489--79344576 Score: 76
Period size: 23 Copynumber: 3.9 Consensus size: 23
79344479 TAATTTATAT
* *
79344489 TATTAATTTTAAAAAAATTTGTAA
1 TATTATTTTTAAAAATATTT-TAA
* *
79344513 TA-TATATTT-AAAATGTTTT-A
1 TATTATTTTTAAAAATATTTTAA
* *
79344533 TAATATTTTTTAAAAT-TTTTAA
1 TATTATTTTTAAAAATATTTTAA
79344555 TTATTATTTTTAAAAATATTTT
1 -TATTATTTTTAAAAATATTTT
79344577 TTAACTTTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
20 3 0.06
21 11 0.21
22 13 0.25
23 19 0.37
24 6 0.12
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
TATTATTTTTAAAAATATTTTAA
Found at i:79344637 original size:37 final size:36
Alignment explanation
Indices: 79344596--79344666 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 36
79344586 TATATATATA
* *
79344596 TATTTGTGAAATTAATTATTTATAAATTTTAAAAATG
1 TATTTGTCAAATTAATTATTTA-AAATTTAAAAAATG
* *
79344633 TATTTTTCAAATTAATTTTTTAAAATTTAAAAAA
1 TATTTGTCAAATTAATTATTTAAAATTTAAAAAA
79344667 ATAATTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 11 0.37
37 19 0.63
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.49
Consensus pattern (36 bp):
TATTTGTCAAATTAATTATTTAAAATTTAAAAAATG
Found at i:79345352 original size:10 final size:9
Alignment explanation
Indices: 79345334--79345422 Score: 63
Period size: 10 Copynumber: 9.4 Consensus size: 9
79345324 TAAAATTTAA
79345334 AAAATATTT
1 AAAATATTT
79345343 AAAATCATTT
1 AAAAT-ATTT
*
79345353 AAAATATTAA
1 AAAATATT-T
79345363 AAAATATTT
1 AAAATATTT
*
79345372 TAAATCATTT
1 AAAAT-ATTT
* *
79345382 TAAATGTTTT
1 AAAAT-ATTT
* *
79345392 ATAATATTA
1 AAAATATTT
79345401 AAAATATATT
1 AAAATAT-TT
*
79345411 -TAATATTT
1 AAAATATTT
79345419 AAAA
1 AAAA
79345423 AATAATTTGA
Statistics
Matches: 62, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
8 2 0.03
9 27 0.44
10 33 0.53
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (9 bp):
AAAATATTT
Found at i:79345358 original size:19 final size:18
Alignment explanation
Indices: 79345334--79345422 Score: 63
Period size: 19 Copynumber: 4.7 Consensus size: 18
79345324 TAAAATTTAA
79345334 AAAATATTTAAAATCATTT
1 AAAATATTTAAAAT-ATTT
*
79345353 AAAATATTAAAAAATATTT
1 AAAATATT-TAAAATATTT
* * *
79345372 TAAATCATTTTAAATGTTTT
1 AAAAT-ATTTAAAAT-ATTT
* *
79345392 ATAATATTAAAAATATATT
1 AAAATATTTAAAATAT-TT
*
79345411 -TAATATTTAAAA
1 AAAATATTTAAAA
79345423 AATAATTTGA
Statistics
Matches: 55, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
18 12 0.22
19 29 0.53
20 14 0.25
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (18 bp):
AAAATATTTAAAATATTT
Found at i:79345362 original size:29 final size:28
Alignment explanation
Indices: 79345324--79345436 Score: 109
Period size: 29 Copynumber: 3.9 Consensus size: 28
79345314 AAATTCTATG
79345324 TAAAATTTAAAAAATATTTAAAATCATT
1 TAAAATTTAAAAAATATTTAAAATCATT
*
79345352 TAAAATATTAAAAAATATTTTAAATCATT
1 TAAAAT-TTAAAAAATATTTAAAATCATT
* ** * * *
79345381 TTAAATGTTTTATAATATTAAAAATATATT
1 TAAAAT-TTAAAAAATATTTAAAAT-CATT
*
79345411 TAATATTTAAAAAATAATTTGAAAAT
1 TAAAATTTAAAAAAT-ATTT-AAAAT
79345437 ATATTTTTAA
Statistics
Matches: 66, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
28 6 0.09
29 45 0.68
30 10 0.15
31 5 0.08
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (28 bp):
TAAAATTTAAAAAATATTTAAAATCATT
Found at i:79345439 original size:31 final size:34
Alignment explanation
Indices: 79345392--79345481 Score: 98
Period size: 35 Copynumber: 2.7 Consensus size: 34
79345382 TAAATGTTTT
79345392 ATAATATTAAAAATATA-TTTAATATTTA-AAAA
1 ATAATATTAAAAATATATTTTAATATTTATAAAA
*
79345424 ATAAT-TTGAAAATATATTTTTAATATTTATAAAAA
1 ATAATATTAAAAATATA-TTTTAATATTTAT-AAAA
* *
79345459 ATTATATTATAAAACAT-TTTTAA
1 ATAATATTA-AAAATATATTTTAA
79345482 AAAATACATT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
31 10 0.21
32 5 0.10
33 11 0.23
35 14 0.29
36 2 0.04
37 6 0.12
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (34 bp):
ATAATATTAAAAATATATTTTAATATTTATAAAA
Found at i:79348169 original size:40 final size:40
Alignment explanation
Indices: 79348114--79348194 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
79348104 TGATCTCCGA
79348114 AACAGGCGGTGTGAGTGC-GAGATGTTCCAAGCACTACGGT
1 AACAGGCGGTGTGAGTGCAG-GATGTTCCAAGCACTACGGT
79348154 AACAGGCGGTGTGAGTGCAGGATGTTCCAAGCACTACGGT
1 AACAGGCGGTGTGAGTGCAGGATGTTCCAAGCACTACGGT
79348194 A
1 A
79348195 CCCGTGTACA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 39 0.98
41 1 0.03
ACGTcount: A:0.26, C:0.20, G:0.35, T:0.20
Consensus pattern (40 bp):
AACAGGCGGTGTGAGTGCAGGATGTTCCAAGCACTACGGT
Found at i:79348442 original size:2 final size:2
Alignment explanation
Indices: 79348437--79348464 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
79348427 GGGTAAAAAA
79348437 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79348465 TTTATTTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79349685 original size:44 final size:45
Alignment explanation
Indices: 79349595--79349723 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
79349585 GACAGAACGA
*
79349595 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
79349641 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
79349685 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
79349724 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:79357035 original size:44 final size:45
Alignment explanation
Indices: 79356945--79357073 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
79356935 GACAGAACGA
*
79356945 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
79356991 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
79357035 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
79357074 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:79358940 original size:30 final size:30
Alignment explanation
Indices: 79358904--79358980 Score: 118
Period size: 30 Copynumber: 2.6 Consensus size: 30
79358894 ACTGCCTATA
*
79358904 TTCGGGTGATATGAACTTGAACCACCCATG
1 TTCGGGTGATATGAACTCGAACCACCCATG
79358934 TTCGGGTGATATGAACTCGAACCACCCATG
1 TTCGGGTGATATGAACTCGAACCACCCATG
* * *
79358964 TCCGAGTTATATGAACT
1 TTCGGGTGATATGAACT
79358981 GCTCTGGGAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (30 bp):
TTCGGGTGATATGAACTCGAACCACCCATG
Found at i:79364597 original size:26 final size:27
Alignment explanation
Indices: 79364557--79364622 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 27
79364547 TTTTAAAAAA
* *
79364557 TATTTAAAATATTATGATTTCTTATAT-
1 TATTTAAAA-ATTATAATTTCTTAAATG
*
79364584 TA-TTAAAAAGTTATAATTTTTTAAATG
1 TATTTAAAAA-TTATAATTTCTTAAATG
79364611 TATTTAAAAATT
1 TATTTAAAAATT
79364623 GTATTTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 1 0.03
26 19 0.58
27 6 0.18
28 7 0.21
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (27 bp):
TATTTAAAAATTATAATTTCTTAAATG
Found at i:79365052 original size:24 final size:22
Alignment explanation
Indices: 79365005--79365145 Score: 63
Period size: 24 Copynumber: 6.0 Consensus size: 22
79364995 TTAAACATAC
79365005 ATTTC-AAATATTATAAAATTAATA
1 ATTTCAAAAT-TTATAAAA--AATA
*
79365029 ATTTCAAAATTAATTTAAAAAATA
1 ATTTCAAAATT--TATAAAAAATA
*
79365053 TATTTTTAAAATTTATAAAAAATTA
1 -A-TTTCAAAATTTATAAAAAA-TA
* * *
79365078 ATTTCACAAATATATATATAA-A
1 ATTTCA-AAATTTATAAAAAATA
* ** * *
79365100 GTTAAAAAATATTTTTAAAAATA
1 ATTTCAAAAT-TTATAAAAAATA
79365123 ATAATT-AAAATTTATAAAAAATA
1 AT--TTCAAAATTTATAAAAAATA
79365146 TTATAAAATA
Statistics
Matches: 87, Mismatches: 19, Indels: 23
0.67 0.15 0.18
Matches are distributed among these distances:
21 4 0.05
22 9 0.10
23 16 0.18
24 35 0.40
25 8 0.09
26 15 0.17
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.40
Consensus pattern (22 bp):
ATTTCAAAATTTATAAAAAATA
Found at i:79365077 original size:37 final size:36
Alignment explanation
Indices: 79365034--79365144 Score: 115
Period size: 37 Copynumber: 3.1 Consensus size: 36
79365024 TAATAATTTC
*
79365034 AAAATTAATTTAAAAAATATATTTTTAAAATTTATAA
1 AAAATTAATTT-AAAAATATATATTTAAAATTTATAA
* * *
79365071 AAAATTAATTTCACAAATATATATAT-AAAGTTA-AA
1 AAAATTAATTT-AAAAATATATATTTAAAATTTATAA
*
79365106 AAATATT--TTTAAAAATA-ATAATTAAAATTTATAA
1 AAA-ATTAATTTAAAAATATATATTTAAAATTTATAA
79365140 AAAAT
1 AAAAT
79365145 ATTATAAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
32 4 0.06
33 14 0.23
34 8 0.13
35 5 0.08
36 9 0.15
37 22 0.35
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.39
Consensus pattern (36 bp):
AAAATTAATTTAAAAATATATATTTAAAATTTATAA
Found at i:79365095 original size:26 final size:23
Alignment explanation
Indices: 79365005--79365093 Score: 65
Period size: 24 Copynumber: 3.7 Consensus size: 23
79364995 TTAAACATAC
79365005 ATTTC-AAATATTATAAAATTAA-TA
1 ATTTCAAAAT-TTATAAAA--AATTA
*
79365029 ATTTCAAAATTAATTTAAAAAATATA
1 ATTTCAAAATT--TATAAAAAAT-TA
* *
79365055 TTTTTAAAATTTATAAAAAATTA
1 ATTTCAAAATTTATAAAAAATTA
*
79365078 ATTTCACAAATATATA
1 ATTTCA-AAATTTATA
79365094 TATAAAGTTA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
23 6 0.12
24 25 0.48
25 4 0.08
26 17 0.33
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (23 bp):
ATTTCAAAATTTATAAAAAATTA
Found at i:79365162 original size:22 final size:22
Alignment explanation
Indices: 79365105--79365185 Score: 67
Period size: 22 Copynumber: 3.6 Consensus size: 22
79365095 ATAAAGTTAA
* *
79365105 AAAATATTTTTAAAAATAATAATT
1 AAAATATTTTAAAAAAT-ATTA-T
*
79365129 AAAAT-TTATAAAAAATATTAT
1 AAAATATTTTAAAAAATATTAT
*
79365150 AAAATATTTTAAATATATATTA-
1 AAAATATTTTAAA-AAATATTAT
* *
79365172 CAAATTTTTTAAAA
1 AAAATATTTTAAAA
79365186 TTAATAATAT
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
21 7 0.15
22 20 0.42
23 16 0.33
24 5 0.10
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAATATTTTAAAAAATATTAT
Found at i:79365186 original size:23 final size:21
Alignment explanation
Indices: 79365105--79365200 Score: 63
Period size: 22 Copynumber: 4.3 Consensus size: 21
79365095 ATAAAGTTAA
79365105 AAAATATTTTTAAAAATAATAATT
1 AAAAT-TTTTT-AAAATAAT-ATT
*
79365129 AAAA-TTTATAAAA-AATATTAT
1 AAAATTTTTTAAAATAATA-T-T
*
79365150 AAAATATTTT-AAATATATATT
1 AAAATTTTTTAAAATA-ATATT
*
79365171 ACAAATTTTTTAAAATTAATAAT
1 A-AAATTTTTTAAAA-TAATATT
79365194 ATAAATT
1 A-AAATT
79365201 AAATAAGAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 17
0.72 0.07 0.21
Matches are distributed among these distances:
19 1 0.02
20 4 0.07
21 14 0.24
22 17 0.29
23 16 0.28
24 6 0.10
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (21 bp):
AAAATTTTTTAAAATAATATT
Found at i:79370184 original size:38 final size:38
Alignment explanation
Indices: 79370133--79370211 Score: 122
Period size: 38 Copynumber: 2.1 Consensus size: 38
79370123 ATTTGATGTG
* * *
79370133 TATCCGGGTTAAATCCCGCAGGCTTCGTGCCGGTATTA
1 TATCCGGGATAAATCCCGCAGGCCTAGTGCCGGTATTA
*
79370171 TATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGATAAATCCCGCAGGCCTAGTGCCGGTATTA
79370209 TAT
1 TAT
79370212 TTGGGCCTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (38 bp):
TATCCGGGATAAATCCCGCAGGCCTAGTGCCGGTATTA
Found at i:79370272 original size:43 final size:43
Alignment explanation
Indices: 79370209--79370363 Score: 265
Period size: 43 Copynumber: 3.6 Consensus size: 43
79370199 GCTGGTATTA
* *
79370209 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
79370252 TATTAGAGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
79370295 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79370338 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
79370364 GTAATGCCAG
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 106 1.00
ACGTcount: A:0.12, C:0.25, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:79370752 original size:45 final size:45
Alignment explanation
Indices: 79370723--79370812 Score: 123
Period size: 42 Copynumber: 2.1 Consensus size: 45
79370713 AGTGAGATAC
79370723 TATTCGGGCTTTCGAGCCTAGCAAGCTATAATGCCGATGAAATGA
1 TATTCGGGCTTTCGAGCCTAGCAAGCTATAATGCCGATGAAATGA
* * * *
79370768 TA-TCGGGC-CTCGAGCCTAGCAAGC-GTAATGCCGGTAAAATGA
1 TATTCGGGCTTTCGAGCCTAGCAAGCTATAATGCCGATGAAATGA
79370810 TAT
1 TAT
79370813 GTTACGTGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
42 17 0.43
43 15 0.38
44 6 0.15
45 2 0.05
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (45 bp):
TATTCGGGCTTTCGAGCCTAGCAAGCTATAATGCCGATGAAATGA
Done.