Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 276 of 292
Found at i:79371166 original size:443 final size:428
Alignment explanation
Indices: 79370341--79371247 Score: 1548
Period size: 443 Copynumber: 2.1 Consensus size: 428
79370331 TGATGTATAT
* *
79370341 TCGGGCCTTCGTGCCTAGCAGGCGTAATGCCAGTGAAAAGATATGTTACGTGAATTCGGTGTTCC
1 TCGGGCC-TCGAGCCTAGCAGGCGTAATGCCGGTGAAAAGATATGTTACGTGAATTCGGTGTTCC
79370406 TTGTAAGATAAGGGTTTAGCCAAATGTTAAAGATGAAATGATAGTGTATTGTATCATGCTTATAT
65 TTGTAAGATAAGGGTTTAGCCAAATGTTAAAGATGAAATGATAGTGTATTGTATCATGCTTATAT
*
79370471 GGCCTAATGACAAGTATAACATGTTGGTAAATGTGCAATGTGCTTTTATAATCGAACGATAAGTT
130 GGCCTAATGACAAGTATAACATGTTGGTAAATATGCAATGTGCTTTTATAATCGAACGATAAGTT
79370536 TGAAATGTTATGCATAAGCTATCAAATGCTAAGTGTGAAAATGAGATGAAAGAAAAGTGTTTGAG
195 TGAAATGTTATGCATAAGCTATCAAATGCTAAGTGTGAAAATGAGATGAAAGAAAAGTGTTTGAG
79370601 ATGTATAATTACATACGTTCGAATGATGTTAGTACTTAATTGATATGAATATGTTATATGGAACT
260 ATGTATAATTACATACGTTCGAATGATGTTAGTACTTAATTGATATGAATATGTTATATGGAACT
*
79370666 TGTTGATTTGATTATTCGAGCCTTTGAGCTTAGCAGACTATAATGCCAGTGAGATACTATTCGGG
325 TGTTGATTTGATTATTCGAGCCTTTGAGCTTAGCAAACTATAATGCCAGTGAGATACTATTCGGG
79370731 CTTTCGAGCCTAGCAAGCTATAATGCC-GATGAAATGATA
390 CTTTCGAGCCTAGCAAGCTATAATGCCAG-TGAAATGATA
*
79370770 TCGGGCCTCGAGCCTAGCAAGCGTAATGCCGGT-AAAATGATATGTTACGTGAATTCGGTGTTCC
1 TCGGGCCTCGAGCCTAGCAGGCGTAATGCCGGTGAAAA-GATATGTTACGTGAATTCGGTGTTCC
*
79370834 TTGTAAGATAAGGGTTTAGCCGAATGTTAAAGATGAAATGATAGTGTATTGTATCATGCTTATAT
65 TTGTAAGATAAGGGTTTAGCCAAATGTTAAAGATGAAATGATAGTGTATTGTATCATGCTTATAT
*
79370899 GGCCTAATGGCAAGTATAACATGTTGGTAAATATGCAATGTGCTTTTATAATCGAACGATAAGTT
130 GGCCTAATGACAAGTATAACATGTTGGTAAATATGCAATGTGCTTTTATAATCGAACG---A---
*
79370964 TGAAATGAATGTGAGTGAAATGTTATGCCTAAGCTATCAAATGCTAAGTGTGAAAATGAGATGAA
189 T--AA-G--T-T---TGAAATGTTATGCATAAGCTATCAAATGCTAAGTGTGAAAATGAGATGAA
79371029 AGAAAAGTGTTTGAGATGTATAATTACATACGTTCGAATGATGTTAGTACTTAATTGATATGAAT
245 AGAAAAGTGTTTGAGATGTATAATTACATACGTTCGAATGATGTTAGTACTTAATTGATATGAAT
79371094 ATGTTATATGGAACTTGTTGATTTGATTATTCGAGCCTTTGAGCTTAGCAAACTATAATGCCAGT
310 ATGTTATATGGAACTTGTTGATTTGATTATTCGAGCCTTTGAGCTTAGCAAACTATAATGCCAGT
*
79371159 GAGATACTATTCGGGCTTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATGATA
375 GAGATACTATTCGGGCTTTCGAGCCTAGCAAGCTATAATGCCAGTGAAATGATA
*
79371213 TCGGGCCTCGAGCCTAGCAGGCGAAATGCCGGTGA
1 TCGGGCCTCGAGCCTAGCAGGCGTAATGCCGGTGA
79371248 TTTGAGAAAA
Statistics
Matches: 449, Mismatches: 11, Indels: 21
0.93 0.02 0.04
Matches are distributed among these distances:
427 4 0.01
428 169 0.38
429 7 0.02
431 1 0.00
434 1 0.00
436 2 0.00
437 1 0.00
439 1 0.00
440 1 0.00
443 260 0.58
444 2 0.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (428 bp):
TCGGGCCTCGAGCCTAGCAGGCGTAATGCCGGTGAAAAGATATGTTACGTGAATTCGGTGTTCCT
TGTAAGATAAGGGTTTAGCCAAATGTTAAAGATGAAATGATAGTGTATTGTATCATGCTTATATG
GCCTAATGACAAGTATAACATGTTGGTAAATATGCAATGTGCTTTTATAATCGAACGATAAGTTT
GAAATGTTATGCATAAGCTATCAAATGCTAAGTGTGAAAATGAGATGAAAGAAAAGTGTTTGAGA
TGTATAATTACATACGTTCGAATGATGTTAGTACTTAATTGATATGAATATGTTATATGGAACTT
GTTGATTTGATTATTCGAGCCTTTGAGCTTAGCAAACTATAATGCCAGTGAGATACTATTCGGGC
TTTCGAGCCTAGCAAGCTATAATGCCAGTGAAATGATA
Found at i:79371234 original size:43 final size:45
Alignment explanation
Indices: 79371146--79371247 Score: 131
Period size: 45 Copynumber: 2.3 Consensus size: 45
79371136 GCTTAGCAAA
* *
79371146 CTATAATGCCAGTGAGATACTATTCGGGCTTTCGAGCCTAGCAGG
1 CTATAATGCCAGTGAAATACTATTCGGGCTCTCGAGCCTAGCAGG
79371191 CTATAATGCCAGTGAAATGA-TA-TCGGGC-CTCGAGCCTAGCAGG
1 CTATAATGCCAGTGAAAT-ACTATTCGGGCTCTCGAGCCTAGCAGG
* *
79371234 CGA-AATGCCGGTGA
1 CTATAATGCCAGTGA
79371248 TTTGAGAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
42 10 0.19
43 16 0.31
44 6 0.12
45 19 0.37
46 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (45 bp):
CTATAATGCCAGTGAAATACTATTCGGGCTCTCGAGCCTAGCAGG
Found at i:79372698 original size:18 final size:18
Alignment explanation
Indices: 79372675--79372713 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
79372665 TAATTGTATT
*
79372675 TAAAACTTAATTTAAAAA
1 TAAAACATAATTTAAAAA
* *
79372693 TAAAACATATTTTAAATA
1 TAAAACATAATTTAAAAA
79372711 TAA
1 TAA
79372714 TTAAATATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (18 bp):
TAAAACATAATTTAAAAA
Found at i:79380822 original size:29 final size:29
Alignment explanation
Indices: 79380751--79380822 Score: 69
Period size: 29 Copynumber: 2.5 Consensus size: 29
79380741 CAAATAATTT
* *
79380751 ATAATAAAATTACACTTTACCCCTTAAAT
1 ATAATAAAATTATACTTTACCCCTTAAAA
*
79380780 ATGAA-AAACA-TATA-TTTAATCCCTTAAAA
1 AT-AATAAA-ATTATACTTT-ACCCCTTAAAA
79380809 ATAATAAAATTATA
1 ATAATAAAATTATA
79380823 AATTAATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
28 6 0.17
29 26 0.74
30 3 0.09
ACGTcount: A:0.51, C:0.14, G:0.01, T:0.33
Consensus pattern (29 bp):
ATAATAAAATTATACTTTACCCCTTAAAA
Found at i:79380930 original size:6 final size:6
Alignment explanation
Indices: 79380921--79380951 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
79380911 TATATCATTA
*
79380921 TCGTGT TCGTGT TCGTGT TCGTGT TGGTGT T
1 TCGTGT TCGTGT TCGTGT TCGTGT TCGTGT T
79380952 TTCTACATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.13, G:0.35, T:0.52
Consensus pattern (6 bp):
TCGTGT
Found at i:79381193 original size:48 final size:47
Alignment explanation
Indices: 79381141--79381232 Score: 112
Period size: 47 Copynumber: 1.9 Consensus size: 47
79381131 TACATACCCT
* * *
79381141 AATCCACCCGAATATGAAGAAAAAATCGTTGAATTTAATTAATATTCC
1 AATCCAACCGAAAATG-AGAAAAAATAGTTGAATTTAATTAATATTCC
* ** *
79381189 AATCCAACCTAAAATGAGAGCAAATAGTTGGATTTAATTAATAT
1 AATCCAACCGAAAATGAGAAAAAATAGTTGAATTTAATTAATAT
79381233 ACTATAGTCG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
47 24 0.65
48 13 0.35
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (47 bp):
AATCCAACCGAAAATGAGAAAAAATAGTTGAATTTAATTAATATTCC
Found at i:79391011 original size:5 final size:5
Alignment explanation
Indices: 79390985--79391039 Score: 82
Period size: 5 Copynumber: 11.8 Consensus size: 5
79390975 AACCAAAGAT
79390985 TAAA- TAAA- TAAA- TAAA- TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC
1 TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC
79391031 TAAAC TAAA
1 TAAAC TAAA
79391040 GAACATTCAA
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
4 16 0.32
5 34 0.68
ACGTcount: A:0.65, C:0.13, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAC
Found at i:79391639 original size:2 final size:2
Alignment explanation
Indices: 79391632--79391659 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
79391622 AAAGTTTTTA
79391632 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79391660 GTGGGTTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79409951 original size:20 final size:20
Alignment explanation
Indices: 79409926--79409968 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
79409916 TATTTTGAAG
79409926 TGAAATCAGTGAGAAGTGCA
1 TGAAATCAGTGAGAAGTGCA
79409946 TGAAATCAGTGAGAAGTGCA
1 TGAAATCAGTGAGAAGTGCA
79409966 TGA
1 TGA
79409969 TACGATTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (20 bp):
TGAAATCAGTGAGAAGTGCA
Found at i:79410178 original size:89 final size:88
Alignment explanation
Indices: 79410042--79410304 Score: 440
Period size: 89 Copynumber: 3.0 Consensus size: 88
79410032 TTGAAGAACA
* *
79410042 ACATTGTCCTAAGATAAGATAAAGCC--AATAAGCTACGAACATTTTCACTTGGAGTTTAAACAG
1 ACATTGTCCTAAGATAAGATAAAGCCATAACAAGCTACGAACATTTTCACTTGGATTTTAAACAG
79410105 GCTTTTCAGATAACAACAGGGAT
66 GCTTTTCAGATAACAACAGGGAT
* * *
79410128 ACATTGTCCTCACATAAGATAAAGCCAGTAACAAACTACGAACATTTTCACTTGGATTTTAAACA
1 ACATTGTCCTAAGATAAGATAAAGCCA-TAACAAGCTACGAACATTTTCACTTGGATTTTAAACA
79410193 GGCTTTTCAGATAACAACAGGGAT
65 GGCTTTTCAGATAACAACAGGGAT
*
79410217 ACATTGTCCTAAGAGAAGATAAAGCCATTAACAAGCTACGAACATTTTCACTTGGATTTTAAACA
1 ACATTGTCCTAAGATAAGATAAAGCCA-TAACAAGCTACGAACATTTTCACTTGGATTTTAAACA
79410282 GGCTTTTCAGATAACAACAGGGA
65 GGCTTTTCAGATAACAACAGGGA
79410305 CTGCTTGCAA
Statistics
Matches: 164, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
86 24 0.15
89 140 0.85
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (88 bp):
ACATTGTCCTAAGATAAGATAAAGCCATAACAAGCTACGAACATTTTCACTTGGATTTTAAACAG
GCTTTTCAGATAACAACAGGGAT
Found at i:79412402 original size:21 final size:21
Alignment explanation
Indices: 79412369--79412409 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
79412359 AACTTGATAA
*
79412369 TTTTTTATCTTGAAATTTAAT
1 TTTTTTAACTTGAAATTTAAT
* *
79412390 TTTTTTAAGTTGAATTTTAA
1 TTTTTTAACTTGAAATTTAA
79412410 ATTTCAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.61
Consensus pattern (21 bp):
TTTTTTAACTTGAAATTTAAT
Found at i:79412531 original size:59 final size:59
Alignment explanation
Indices: 79412406--79412516 Score: 161
Period size: 59 Copynumber: 1.9 Consensus size: 59
79412396 AAGTTGAATT
* **
79412406 TTAAATTTCAAAATTGTTATTACATTATGGTCTGAATTTATTTTTATTTAAGTTAGGAC
1 TTAAATTTCAAAATTGTTATTACATTAGGGTCTGAATTTATTTTTATCCAAGTTAGGAC
* * *
79412465 TTAAATTTGACAATTGTTATTACATTAGGGTTTGAATTT-TTTTTATCCAAGT
1 TTAAATTTCAAAATTGTTATTACATTAGGGTCTGAATTTATTTTTATCCAAGT
79412517 AGCCTTTGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 11 0.24
59 35 0.76
ACGTcount: A:0.31, C:0.07, G:0.13, T:0.50
Consensus pattern (59 bp):
TTAAATTTCAAAATTGTTATTACATTAGGGTCTGAATTTATTTTTATCCAAGTTAGGAC
Found at i:79423040 original size:19 final size:19
Alignment explanation
Indices: 79423018--79423054 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
79423008 GAAACAGGGG
*
79423018 AAGGAAAGAAGGAAAAAGA
1 AAGGAAAGAAAGAAAAAGA
79423037 AAGGAAAGAAAGAAAAAG
1 AAGGAAAGAAAGAAAAAG
79423055 GAAAAATTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAGGAAAGAAAGAAAAAGA
Found at i:79424151 original size:51 final size:54
Alignment explanation
Indices: 79424066--79424180 Score: 137
Period size: 51 Copynumber: 2.2 Consensus size: 54
79424056 AAGTGTCACC
* * * *
79424066 TTACCGTTACTGTTCCGGATTCGTTCAGAAGAGGTA-T-TCTGTACCT-TATTG
1 TTACTGTTACTGTTCCGGATTCGATCAGAAGAGGTACTCTATGTACCTCTACTG
* * *
79424117 TTACTGTTACTGTTCCGGATTTGATCCGATGAGGTACTCTATGTACCTCTACTG
1 TTACTGTTACTGTTCCGGATTCGATCAGAAGAGGTACTCTATGTACCTCTACTG
*
79424171 TTACTTTTAC
1 TTACTGTTAC
79424181 CGTTACTATT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
51 31 0.58
52 1 0.02
53 8 0.15
54 13 0.25
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.41
Consensus pattern (54 bp):
TTACTGTTACTGTTCCGGATTCGATCAGAAGAGGTACTCTATGTACCTCTACTG
Found at i:79424375 original size:54 final size:54
Alignment explanation
Indices: 79424306--79424477 Score: 283
Period size: 54 Copynumber: 3.2 Consensus size: 54
79424296 AAAATAAAGG
*
79424306 TACTGAATAACTGACTGCT-ACTAAATAAATGACTGTTACTGAATAACTGATTAT
1 TACTGAATAATTGACTG-TGACTAAATAAATGACTGTTACTGAATAACTGATTAT
*
79424360 TACTGAATAATTGACTGTGACTTAATAAATGACTGTTACTGAATAACTGATTAT
1 TACTGAATAATTGACTGTGACTAAATAAATGACTGTTACTGAATAACTGATTAT
* * *
79424414 TACTGAATAATTGACTGTGACTGAATAAATGACTGTTACTAAATAAATGATTAT
1 TACTGAATAATTGACTGTGACTAAATAAATGACTGTTACTGAATAACTGATTAT
79424468 TACTGAATAA
1 TACTGAATAA
79424478 CTGATTAATA
Statistics
Matches: 112, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
53 1 0.01
54 111 0.99
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.35
Consensus pattern (54 bp):
TACTGAATAATTGACTGTGACTAAATAAATGACTGTTACTGAATAACTGATTAT
Found at i:79424484 original size:18 final size:18
Alignment explanation
Indices: 79424306--79424477 Score: 191
Period size: 18 Copynumber: 9.6 Consensus size: 18
79424296 AAAATAAAGG
* *
79424306 TACTGAATAACTGACTGC
1 TACTGAATAAATGACTGT
*
79424324 TACTAAATAAATGACTGT
1 TACTGAATAAATGACTGT
* * *
79424342 TACTGAATAACTGATTAT
1 TACTGAATAAATGACTGT
*
79424360 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTGT
* *
79424378 GACTTAATAAATGACTGT
1 TACTGAATAAATGACTGT
* * *
79424396 TACTGAATAACTGATTAT
1 TACTGAATAAATGACTGT
*
79424414 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTGT
*
79424432 GACTGAATAAATGACTGT
1 TACTGAATAAATGACTGT
* * *
79424450 TACTAAATAAATGATTAT
1 TACTGAATAAATGACTGT
79424468 TACTGAATAA
1 TACTGAATAA
79424478 CTGATTAATA
Statistics
Matches: 126, Mismatches: 28, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 126 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.35
Consensus pattern (18 bp):
TACTGAATAAATGACTGT
Found at i:79424831 original size:33 final size:33
Alignment explanation
Indices: 79424794--79424859 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
79424784 TATACTATTG
79424794 AGTTTATTATATGATTTTAAGAGTTTGTAATAT
1 AGTTTATTATATGATTTTAAGAGTTTGTAATAT
79424827 AGTTTATTATATGATTTTAAGAGTTTGTAATAT
1 AGTTTATTATATGATTTTAAGAGTTTGTAATAT
79424860 TTTTCTTACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (33 bp):
AGTTTATTATATGATTTTAAGAGTTTGTAATAT
Found at i:79427523 original size:32 final size:32
Alignment explanation
Indices: 79427482--79427545 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
79427472 AGACTCGGAT
79427482 AATGTTCCCAATTGTTTCTATTAAAAGTAGAC
1 AATGTTCCCAATTGTTTCTATTAAAAGTAGAC
79427514 AATGTTCCCAATTGTTTCTATTAAAAGTAGAC
1 AATGTTCCCAATTGTTTCTATTAAAAGTAGAC
79427546 TCATAAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (32 bp):
AATGTTCCCAATTGTTTCTATTAAAAGTAGAC
Found at i:79430122 original size:46 final size:46
Alignment explanation
Indices: 79430070--79430290 Score: 309
Period size: 46 Copynumber: 4.8 Consensus size: 46
79430060 AGTGTGCTCT
*
79430070 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
79430116 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
79430162 GTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * *
79430208 GTGATATAAAATGAATAAGACCATAGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
79430254 ATGATA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATAC
79430291 TATGACATCA
Statistics
Matches: 162, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 162 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:79431225 original size:49 final size:51
Alignment explanation
Indices: 79431111--79431243 Score: 180
Period size: 49 Copynumber: 2.6 Consensus size: 51
79431101 GGGGTGTTAC
* * * *
79431111 ACACGTAGTAGCCAGCACTTAGTGCTACACACGTGATCAAAGTTATCGGGT
1 ACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTTATCCGGT
* * * *
79431162 ACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGT
1 ACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTTATCCGGT
79431211 ACACGTAGTAGCCTGCACTTAGTACTACACACG
1 ACACGTAGTAGCCTGCACTTAGTACTACACACG
79431244 TGACCTCACA
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 38 0.54
50 3 0.04
51 30 0.42
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (51 bp):
ACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTTATCCGGT
Found at i:79433538 original size:23 final size:23
Alignment explanation
Indices: 79433495--79433538 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
79433485 CCAATTCAAC
*
79433495 ATATTTTCAAGATAAATTCATGT
1 ATATTTTCAAGATAAAGTCATGT
*
79433518 ATATTTAT-AAGATAACGTCAT
1 ATATTT-TCAAGATAAAGTCAT
79433539 CACATACCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.94
24 1 0.06
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (23 bp):
ATATTTTCAAGATAAAGTCATGT
Found at i:79436130 original size:15 final size:14
Alignment explanation
Indices: 79436090--79436130 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
79436080 CTCATTCAAA
79436090 TTTTGTAG-TTAGAT
1 TTTTGTAGTTTA-AT
79436104 TTTTGT-GTTTAAT
1 TTTTGTAGTTTAAT
79436117 TTTTGTAAGTTTAA
1 TTTTGT-AGTTTAA
79436131 AATATGAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 9 0.38
14 9 0.38
15 6 0.25
ACGTcount: A:0.22, C:0.00, G:0.17, T:0.61
Consensus pattern (14 bp):
TTTTGTAGTTTAAT
Found at i:79436969 original size:41 final size:41
Alignment explanation
Indices: 79436924--79437018 Score: 113
Period size: 41 Copynumber: 2.3 Consensus size: 41
79436914 AGCGGCGTTT
*
79436924 TTAGCGACG-TTTGAATGAAAAA-CGCCACTAAAGAACAAGCA
1 TTAGCGACGCTTT--ATGAAAAAGAGCCACTAAAGAACAAGCA
* * *
79436965 TTAGCGACGCTTTTTTAAAAAGAGCCACTAAAGAACGAGCA
1 TTAGCGACGCTTTATGAAAAAGAGCCACTAAAGAACAAGCA
*
79437006 TTAGCGGCGCTTT
1 TTAGCGACGCTTT
79437019 TTTATAGGTT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 6 0.13
41 38 0.81
42 3 0.06
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (41 bp):
TTAGCGACGCTTTATGAAAAAGAGCCACTAAAGAACAAGCA
Found at i:79440041 original size:18 final size:18
Alignment explanation
Indices: 79440018--79440052 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79440008 TAGTAACAAA
*
79440018 AGTAAATAAAAGAAACAG
1 AGTAAAGAAAAGAAACAG
*
79440036 AGTAAAGAAAGGAAACA
1 AGTAAAGAAAAGAAACA
79440053 AAAAGAATAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.06, G:0.20, T:0.09
Consensus pattern (18 bp):
AGTAAAGAAAAGAAACAG
Found at i:79441630 original size:23 final size:23
Alignment explanation
Indices: 79441600--79441686 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
79441590 GCTTTATCGA
* *
79441600 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
79441623 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
79441644 TCAGGCACCTCGTGTGTC--ATT
1 TCAGGCACCTCATGTGTCGTATT
* * *
79441665 TTAGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
79441687 ACTGATCAGG
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
19 1 0.02
21 32 0.60
23 20 0.38
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:79441647 original size:21 final size:22
Alignment explanation
Indices: 79441612--79441661 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
79441602 AGGCACTTTA
79441612 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA-TTCAGGCACCTCG
79441635 TGTGTCGTA-TCAGGCACCTCG
1 TGTGTCGTATTCAGGCACCTCG
79441656 TGTGTC
1 TGTGTC
79441662 ATTTTAGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 18 0.67
23 9 0.33
ACGTcount: A:0.12, C:0.26, G:0.28, T:0.34
Consensus pattern (22 bp):
TGTGTCGTATTCAGGCACCTCG
Found at i:79447970 original size:18 final size:18
Alignment explanation
Indices: 79447947--79447981 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
79447937 TAGTAACAAA
*
79447947 AGTAAATAAAAGAAACAG
1 AGTAAAGAAAAGAAACAG
79447965 AGTAAAGAAAAGAAACA
1 AGTAAAGAAAAGAAACA
79447982 AAAAGAATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.69, C:0.06, G:0.17, T:0.09
Consensus pattern (18 bp):
AGTAAAGAAAAGAAACAG
Found at i:79447993 original size:27 final size:30
Alignment explanation
Indices: 79447954--79448008 Score: 71
Period size: 27 Copynumber: 1.9 Consensus size: 30
79447944 AAAAGTAAAT
*
79447954 AAAAGAAACAGAGTAAAGA-AA-AGAAACA
1 AAAAGAAACAGAGAAAAGAGAACAGAAACA
*
79447982 AAAAG-AATAGAGAAAAGAGAACAGAAA
1 AAAAGAAACAGAGAAAAGAGAACAGAAA
79448009 GCATTCGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 11 0.48
28 7 0.30
29 5 0.22
ACGTcount: A:0.71, C:0.05, G:0.20, T:0.04
Consensus pattern (30 bp):
AAAAGAAACAGAGAAAAGAGAACAGAAACA
Found at i:79449562 original size:23 final size:23
Alignment explanation
Indices: 79449532--79449617 Score: 90
Period size: 21 Copynumber: 3.9 Consensus size: 23
79449522 GCTTTATCGA
* *
79449532 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
79449555 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
79449576 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
79449598 T-AGGCACTTTATGTGTCGTA
1 TCAGGCACCTCATGTGTCGTA
79449618 CACTGATCAG
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.65
22 1 0.02
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:79451009 original size:14 final size:14
Alignment explanation
Indices: 79450992--79451029 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
79450982 ATCATTATAG
79450992 TTTAGGGTTTATGA
1 TTTAGGGTTTATGA
*
79451006 TTTAGGGTATATGA
1 TTTAGGGTTTATGA
*
79451020 TTTAGAGTTT
1 TTTAGGGTTT
79451030 CAAGTGTATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (14 bp):
TTTAGGGTTTATGA
Found at i:79451187 original size:32 final size:32
Alignment explanation
Indices: 79451144--79451210 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
79451134 TACTTAAGGA
79451144 TTAGACTTTATATATATTAAATGGTTTACGAT
1 TTAGACTTTATATATATTAAATGGTTTACGAT
* *
79451176 TTAGGCTTTATATATATTAAATGGTTTAGGAT
1 TTAGACTTTATATATATTAAATGGTTTACGAT
79451208 TTA
1 TTA
79451211 AAGTTTACTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.33, C:0.04, G:0.15, T:0.48
Consensus pattern (32 bp):
TTAGACTTTATATATATTAAATGGTTTACGAT
Found at i:79459527 original size:643 final size:643
Alignment explanation
Indices: 79458301--79459578 Score: 2421
Period size: 643 Copynumber: 2.0 Consensus size: 643
79458291 TGTTGCCGCA
*
79458301 GAAGCTATCATTTCCCTTGTGCAAAAGAGATTCCAAAATGTCGATGGGACTATGTAATTCTTTAG
1 GAAGCTATCATTTCCCTTGTGCAAAAGAGATTCCAAAATGTCGATGGGACTATGTAATTCTTCAG
*
79458366 TCAAGTTTCCAAATGAAAAGTCTAGAAAGGCCCATTCTGCAGCCAAGTTCCCAAATAAGAAGCCT
66 TCAAGTTTCCAAACGAAAAGTCTAGAAAGGCCCATTCTGCAGCCAAGTTCCCAAATAAGAAGCCT
*
79458431 GGAAACTGTCTATCTGCTGATGATAAAGTGCCAACTGAAAGGTAATTAATCAATTAAGATATCTT
131 GGAAACTGTCTATCTACTGATGATAAAGTGCCAACTGAAAGGTAATTAATCAATTAAGATATCTT
79458496 AGACATCTTACGCAGGTGTATAACTCCATTGCATGCTTTTTGAGGGACTTAACTACTTTATTTTT
196 AGACATCTTACGCAGGTGTATAACTCCATTGCATGCTTTTTGAGGGACTTAACTACTTTATTTTT
79458561 CATTTACTTTCTCTTAAGAAGAAAGAAATGGCAAAAAAAGCCAAATTATTTGAAGTTTTCAGTTA
261 CATTTACTTTCTCTTAAGAAGAAAGAAATGGCAAAAAAAGCCAAATTATTTGAAGTTTTCAGTTA
79458626 TGGAATCTTAAACTGGTTATTGAATTGTCTGGAGAGTAAACTGATTGTGGTTCTGCATGCAGTGG
326 TGGAATCTTAAACTGGTTATTGAATTGTCTGGAGAGTAAACTGATTGTGGTTCTGCATGCAGTGG
*
79458691 CCAGCTGAAATCCAACACTTTTTGAGGCCAACCAGAGAATAAAAAAGATTGGGTTTTCTGTAGAT
391 CCAGCTGAAATCCAACACTTTTTGAGGCCAACCAGAGAATAAAAAAGATTGGGTTTTCTATAGAT
*
79458756 CTGCTTTGTCTCCTGAGGAAAATGTTAGATTAGATGAAACCCATTTTTCTGGTGAGTAGTTATCT
456 CTGCTTTGTCTCCTGAGGAAAAGGTTAGATTAGATGAAACCCATTTTTCTGGTGAGTAGTTATCT
*
79458821 TTTTTAATAATTATATCTTTGACTTGCGTATGTGTTTTATTGTGTTGAAAGGTAAACTCGTATAC
521 TTTTTAATAATTATATCTTTGACTTGCGTAAGTGTTTTATTGTGTTGAAAGGTAAACTCGTATAC
79458886 TGATGATATTTTTGCAAGTACTGAAATTTCTCGTTAATTGATTCTTTTTGCAAGTACT
586 TGATGATATTTTTGCAAGTACTGAAATTTCTCGTTAATTGATTCTTTTTGCAAGTACT
79458944 GAAGCTATCATTTCCCTTGTGCAAAAGAGATTCCAAAATGTCGATGGGACTATGTAATTCTTCAG
1 GAAGCTATCATTTCCCTTGTGCAAAAGAGATTCCAAAATGTCGATGGGACTATGTAATTCTTCAG
*
79459009 TCAAGTTTCCAAACGAGAAGTCTAGAAAGGCCCATTCTGCAGCCAAGTTCCCAAATAAGAAGCCT
66 TCAAGTTTCCAAACGAAAAGTCTAGAAAGGCCCATTCTGCAGCCAAGTTCCCAAATAAGAAGCCT
* *
79459074 GGAAACTTTGTATCTACTGATGATAAAGTGCCAACTGAAAGGTAATTAATCAATTAAGATATCTT
131 GGAAACTGTCTATCTACTGATGATAAAGTGCCAACTGAAAGGTAATTAATCAATTAAGATATCTT
*
79459139 AGACGTCTTACGCAGGTGTATAACTCCATTGCATGCTTTTTGAGGGACTTAACTACTTTATTTTT
196 AGACATCTTACGCAGGTGTATAACTCCATTGCATGCTTTTTGAGGGACTTAACTACTTTATTTTT
79459204 CATTTACTTTCTCTTAAGAAGAAAGAAATGGCAAAAAAAGCCAAATTATTTGAAGTTTTCAGTTA
261 CATTTACTTTCTCTTAAGAAGAAAGAAATGGCAAAAAAAGCCAAATTATTTGAAGTTTTCAGTTA
79459269 TGGAATCTTAAACTGGTTATTGAATTGTCTGGAGAGTAAACTGATTGTGGTTCTGCATGCAGTGG
326 TGGAATCTTAAACTGGTTATTGAATTGTCTGGAGAGTAAACTGATTGTGGTTCTGCATGCAGTGG
* * *
79459334 CCAGCTGAAATCCAACACTTTTTGGGGCCAGCCAGAGAATAAAAAAGATTGGGTTTTCTATGGAT
391 CCAGCTGAAATCCAACACTTTTTGAGGCCAACCAGAGAATAAAAAAGATTGGGTTTTCTATAGAT
*
79459399 CTGCTTTGTCTCCTGAGGAAAAGGTTAGATTAGATGAAACCCATTTTTCTGTTGAGTAGTTATCT
456 CTGCTTTGTCTCCTGAGGAAAAGGTTAGATTAGATGAAACCCATTTTTCTGGTGAGTAGTTATCT
79459464 TTTTTAATAATTATATCTTTGACTTGCGTAAGTGTTTTATTGTGTTGAAAGGTAAACTCGTATAC
521 TTTTTAATAATTATATCTTTGACTTGCGTAAGTGTTTTATTGTGTTGAAAGGTAAACTCGTATAC
*
79459529 TGATGATATTTTTGCAAGTATTGAAATTTCTCGTTAATTGATTCTTTTTG
586 TGATGATATTTTTGCAAGTACTGAAATTTCTCGTTAATTGATTCTTTTTG
79459579 GTGTTAAAAG
Statistics
Matches: 620, Mismatches: 15, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
643 620 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (643 bp):
GAAGCTATCATTTCCCTTGTGCAAAAGAGATTCCAAAATGTCGATGGGACTATGTAATTCTTCAG
TCAAGTTTCCAAACGAAAAGTCTAGAAAGGCCCATTCTGCAGCCAAGTTCCCAAATAAGAAGCCT
GGAAACTGTCTATCTACTGATGATAAAGTGCCAACTGAAAGGTAATTAATCAATTAAGATATCTT
AGACATCTTACGCAGGTGTATAACTCCATTGCATGCTTTTTGAGGGACTTAACTACTTTATTTTT
CATTTACTTTCTCTTAAGAAGAAAGAAATGGCAAAAAAAGCCAAATTATTTGAAGTTTTCAGTTA
TGGAATCTTAAACTGGTTATTGAATTGTCTGGAGAGTAAACTGATTGTGGTTCTGCATGCAGTGG
CCAGCTGAAATCCAACACTTTTTGAGGCCAACCAGAGAATAAAAAAGATTGGGTTTTCTATAGAT
CTGCTTTGTCTCCTGAGGAAAAGGTTAGATTAGATGAAACCCATTTTTCTGGTGAGTAGTTATCT
TTTTTAATAATTATATCTTTGACTTGCGTAAGTGTTTTATTGTGTTGAAAGGTAAACTCGTATAC
TGATGATATTTTTGCAAGTACTGAAATTTCTCGTTAATTGATTCTTTTTGCAAGTACT
Found at i:79460529 original size:44 final size:44
Alignment explanation
Indices: 79460466--79460554 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
79460456 GCTATCGCTT
79460466 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
1 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
79460510 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
1 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
79460554 T
1 T
79460555 GATGCTATAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.46
Consensus pattern (44 bp):
TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
Found at i:79462361 original size:19 final size:21
Alignment explanation
Indices: 79462333--79462380 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
79462323 TTATTATTTA
79462333 TTTTAGTTTTGA-TTTAAAAT
1 TTTTAGTTTTGATTTTAAAAT
* *
79462353 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTTTAAAAT
79462373 TTTTAGTT
1 TTTTAGTT
79462381 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 5 0.21
20 17 0.71
21 2 0.08
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTTTAAAAT
Found at i:79462389 original size:32 final size:32
Alignment explanation
Indices: 79462318--79462388 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 32
79462308 TATTTAATCT
* *
79462318 AATTTTTATTATTTATTTTAGTTTTGATTTAA
1 AATTTTTATTATTTATTTTAATTTTGAGTTAA
*
79462350 AATTTTTATT-TTTATTTTAATATTTTTAGTTAA
1 AATTTTTATTATTTATTTT-A-ATTTTGAGTTAA
79462383 AATTTT
1 AATTTT
79462389 AATAGAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 8 0.24
32 11 0.32
33 15 0.44
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (32 bp):
AATTTTTATTATTTATTTTAATTTTGAGTTAA
Found at i:79462609 original size:43 final size:43
Alignment explanation
Indices: 79462542--79462684 Score: 205
Period size: 43 Copynumber: 3.3 Consensus size: 43
79462532 ATTTCATTAT
* * **
79462542 CTTTAGTGGCGTTTTTGGGTAAAGCGTCGCTAAAGGTCATGAC
1 CTTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGAC
* *
79462585 CTTTAGCTGCGTTTGTGGAAAAAGCGTCGTTAAAGGTCATGAC
1 CTTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGAC
* * *
79462628 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGAT
1 CTTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGAC
79462671 CTTTAGCGGCGTTT
1 CTTTAGCGGCGTTT
79462685 TTTTAAATAA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 89 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGAC
Found at i:79464160 original size:31 final size:30
Alignment explanation
Indices: 79464124--79464181 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
79464114 AAACTATAAC
79464124 AGAGGAAGATAAAAAAGATTACCAAAAGATT
1 AGAGGAAGAT-AAAAAGATTACCAAAAGATT
* *
79464155 AGAGGAAGATAAGAATATTACCAAAAG
1 AGAGGAAGATAAAAAGATTACCAAAAG
79464182 CAAATGTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.16
Consensus pattern (30 bp):
AGAGGAAGATAAAAAGATTACCAAAAGATT
Found at i:79472851 original size:101 final size:102
Alignment explanation
Indices: 79472720--79472934 Score: 353
Period size: 101 Copynumber: 2.1 Consensus size: 102
79472710 GACCATGGCA
*
79472720 ACAAGTGATAAG-AGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTA
1 ACAAGTGATAAGTAAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTA
*
79472784 ATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
66 ATAGCTTCGGCTACACTTATATGATCAAGGACAAATG
* * *
79472821 A-AAGTGATAAGTAAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGAAAGTGATAAGTG
1 ACAAGTGATAAGTAAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTA
*
79472885 ATAGCTTCGGCTACACTTATATGATCAATGACAAATG
66 ATAGCTTCGGCTACACTTATATGATCAAGGACAAATG
*
79472922 ACAAGTGAAAAGT
1 ACAAGTGATAAGT
79472935 GGTAGCTTTT
Statistics
Matches: 105, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
100 10 0.10
101 85 0.81
102 10 0.10
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (102 bp):
ACAAGTGATAAGTAAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTA
ATAGCTTCGGCTACACTTATATGATCAAGGACAAATG
Found at i:79472859 original size:51 final size:50
Alignment explanation
Indices: 79472722--79472934 Score: 338
Period size: 50 Copynumber: 4.2 Consensus size: 50
79472712 CCATGGCAAC
79472722 AAGTGATAAG-AGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTA-ATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
79472772 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
79472822 AAGTGATAAGTAAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGT-AATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
79472873 AAGTGATAAGTGATAGCTTCGGCTACACTTATATGATCAATGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
79472923 CAAGTGAAAAGT
1 -AAGTGATAAGT
79472935 GGTAGCTTTT
Statistics
Matches: 152, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
50 93 0.61
51 59 0.39
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:79472963 original size:31 final size:31
Alignment explanation
Indices: 79472925--79473073 Score: 192
Period size: 31 Copynumber: 4.8 Consensus size: 31
79472915 ACAAATGACA
*** *
79472925 AGTGAAAAGTGGTAGCTTTTGTTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
79472956 AGTGAAAAGTGGTAGCTCCGGCTACCTGATT
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
79472987 AGTGAAAAGTGGTAGCTCCGGCTACCTGATT
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* * *
79473018 AGTGAAAAATGGGAGCTCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
79473049 AGTGAATAGTGGTAGC-CTCGGCTAC
1 AGTGAAAAGTGGTAGCTC-CGGCTAC
79473074 AAGTGACAAG
Statistics
Matches: 104, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
30 1 0.01
31 103 0.99
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:79473084 original size:7 final size:7
Alignment explanation
Indices: 79473072--79473098 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
79473062 AGCCTCGGCT
79473072 ACAAGTG
1 ACAAGTG
79473079 ACAAGTG
1 ACAAGTG
79473086 ACAAGTG
1 ACAAGTG
79473093 ACAAGT
1 ACAAGT
79473099 AATTTCTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.26, T:0.15
Consensus pattern (7 bp):
ACAAGTG
Found at i:79473173 original size:47 final size:47
Alignment explanation
Indices: 79473104--79473268 Score: 164
Period size: 47 Copynumber: 3.6 Consensus size: 47
79473094 CAAGTAATTT
* *
79473104 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * * *
79473151 CTGTATAAGACCATATTTGGGATATGGCATCAGTGAGATATGTGATT
1 CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
79473198 C-GTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * *
79473240 -TGTGTAAGACCATAGCTGGGCTATGGCAT
1 CTGTATAAGACCATATCTGGGATATGGCAT
79473269 TATTATGTGA
Statistics
Matches: 104, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
41 7 0.07
42 30 0.29
46 25 0.24
47 42 0.40
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (47 bp):
CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:79473257 original size:42 final size:43
Alignment explanation
Indices: 79473199--79473355 Score: 230
Period size: 42 Copynumber: 3.7 Consensus size: 43
79473189 TATGTGATTC
*
79473199 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATGTGAATAT
*
79473241 GTGTAAGACCATAGCTGGGCTATGGCAT-TATTATGTGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATGTGAATAT
* *
79473283 GTGTAAGACCATAGCTAGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATGTGAATAT
* **
79473325 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
79473356 GAAAACGAAG
Statistics
Matches: 104, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.01
42 102 0.98
43 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATGTGAATAT
Found at i:79478344 original size:2 final size:2
Alignment explanation
Indices: 79478337--79478369 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
79478327 TGAAATAAAA
79478337 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79478370 AAACATAGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79483850 original size:35 final size:36
Alignment explanation
Indices: 79483783--79483950 Score: 180
Period size: 35 Copynumber: 4.6 Consensus size: 36
79483773 TCCTCATTGA
*** *
79483783 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTATGGGAT
* **
79483819 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGG----GAT
*
79483859 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
79483894 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* *
79483929 GATACCATACCTACGTTTCACA
1 AATACCATACCTACATTTCACA
79483951 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
35 73 0.62
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAT
Found at i:79483909 original size:75 final size:73
Alignment explanation
Indices: 79483778--79483950 Score: 201
Period size: 75 Copynumber: 2.4 Consensus size: 73
79483768 GGTTTTCCTC
*** * * **
79483778 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
79483843 TCAGTATGG
65 TCAGTATGG
*
79483852 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
79483916 ACTCAGTATGG
63 ACTCAGTATGG
*
79483927 A-TG--ATACCATACCTACGTTTCACA
1 ATTGAAATACCATACCTACATTTCACA
79483951 CTTTGCCATG
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
70 20 0.23
73 2 0.02
74 4 0.05
75 46 0.53
76 15 0.17
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:79487997 original size:23 final size:23
Alignment explanation
Indices: 79487915--79488001 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
79487905 CCTGATCAGT
*
79487915 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
79487937 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
79487957 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
79487980 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
79488002 TGGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:79488397 original size:15 final size:15
Alignment explanation
Indices: 79488372--79488429 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
79488362 TCATATATAT
79488372 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
79488388 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
79488403 AATAATTTCAATCAA
1 TATAAATTCAATCAA
79488418 TATAAATTCAAT
1 TATAAATTCAAT
79488430 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:79489755 original size:8 final size:8
Alignment explanation
Indices: 79489742--79489770 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
79489732 TATCTTTATT
79489742 ATATAATA
1 ATATAATA
79489750 ATATAATA
1 ATATAATA
79489758 ATATAATA
1 ATATAATA
79489766 ATATA
1 ATATA
79489771 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:79492371 original size:18 final size:18
Alignment explanation
Indices: 79492348--79492399 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
79492338 CGAGCTTGAA
79492348 AGCAAGATGTGTGAGCTC
1 AGCAAGATGTGTGAGCTC
*
79492366 AGCAAGATGTGCGAGCTC
1 AGCAAGATGTGTGAGCTC
* *
79492384 AGCAAAAGGTGTGAGC
1 AGCAAGATGTGTGAGC
79492400 CCTATAAAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.31, C:0.17, G:0.35, T:0.17
Consensus pattern (18 bp):
AGCAAGATGTGTGAGCTC
Found at i:79492542 original size:44 final size:44
Alignment explanation
Indices: 79492493--79492623 Score: 158
Period size: 44 Copynumber: 3.0 Consensus size: 44
79492483 AATACGAGCA
*
79492493 AGTCTAAATGCAAGCCCGAATGGGTGCAAGCCGAAGTGGCAAAC
1 AGTCTAAATGCAAGCCCGAATGGGTGCAAGCCGAAGTGACAAAC
* * * **
79492537 GGTCTAAATGCAAGCCC-AAGTGGATGCAAGTCGAAGTGACGGAC
1 AGTCTAAATGCAAGCCCGAA-TGGGTGCAAGCCGAAGTGACAAAC
* * *
79492581 AGTCTAAATGCAAG-CCGAGTGGGTGCAAGCCAAAATGACAAAC
1 AGTCTAAATGCAAGCCCGAATGGGTGCAAGCCGAAGTGACAAAC
79492624 TGAAGGCAAT
Statistics
Matches: 71, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
43 22 0.31
44 49 0.69
ACGTcount: A:0.35, C:0.21, G:0.29, T:0.15
Consensus pattern (44 bp):
AGTCTAAATGCAAGCCCGAATGGGTGCAAGCCGAAGTGACAAAC
Found at i:79495245 original size:44 final size:44
Alignment explanation
Indices: 79495177--79495337 Score: 214
Period size: 44 Copynumber: 3.5 Consensus size: 44
79495167 TTTGAATACT
* *
79495177 TCTGATCAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
79495221 TCTGATCAGTGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATC-------AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* * *
79495272 TCTGATCCGTGATAAGTGATAAGTGGTAGCTTTAGCTATACTTA
1 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
79495316 TCTGATCAGTGACAAGTGATAA
1 TCTGATCAGTGACAAGTGATAA
79495338 ATGTGATCAG
Statistics
Matches: 103, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
44 61 0.59
51 42 0.41
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (44 bp):
TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:79495265 original size:51 final size:51
Alignment explanation
Indices: 79495179--79495334 Score: 209
Period size: 51 Copynumber: 3.2 Consensus size: 51
79495169 TGAATACTTC
* * *
79495179 TGATCAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
*
79495230 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCCG
1 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
*
79495281 TG---A-T---AAGTGATAAGTGGTAGCTTTAGCTATACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
*
79495325 TGACAAGTGA
1 TGATAAGTGA
79495335 TAAATGTGAT
Statistics
Matches: 93, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
44 40 0.43
47 2 0.02
48 2 0.02
51 49 0.53
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (51 bp):
TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
Found at i:79496861 original size:28 final size:28
Alignment explanation
Indices: 79496829--79496886 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
79496819 ACTGGTGGGA
79496829 AACTGTGGAAGCTGTAGTACCTGCAGAG
1 AACTGTGGAAGCTGTAGTACCTGCAGAG
79496857 AACTGTGGAAGCTGTAGTACCTGCAGAG
1 AACTGTGGAAGCTGTAGTACCTGCAGAG
79496885 AA
1 AA
79496887 GCTTACTTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (28 bp):
AACTGTGGAAGCTGTAGTACCTGCAGAG
Found at i:79503114 original size:51 final size:51
Alignment explanation
Indices: 79502954--79503111 Score: 280
Period size: 51 Copynumber: 3.1 Consensus size: 51
79502944 ACTTCTGATC
* * *
79502954 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
79503005 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
*
79503056 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
79503107 AGTGA
1 AGTGA
79503112 TAAATATGAT
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 103 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:79508934 original size:23 final size:21
Alignment explanation
Indices: 79508891--79508934 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
79508881 TCCATCAAAC
* *
79508891 AATAAAAAATATTTTTTACAT
1 AATAAAAAATAATTTTCACAT
79508912 AATAATAAATATAATTTTCACAT
1 AATAA-AAA-ATAATTTTCACAT
79508935 CTTTTCTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 3 0.16
23 11 0.58
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (21 bp):
AATAAAAAATAATTTTCACAT
Found at i:79520203 original size:8 final size:8
Alignment explanation
Indices: 79520190--79520231 Score: 52
Period size: 7 Copynumber: 5.2 Consensus size: 8
79520180 AGATATGGAC
79520190 TTCTTTTT
1 TTCTTTTT
79520198 TTCTTTCTT
1 TTCTTT-TT
79520207 TCTCTTTTT
1 T-TCTTTTT
79520216 TT-TTTTT
1 TTCTTTTT
79520223 TT-TTTTT
1 TTCTTTTT
79520230 TT
1 TT
79520232 TTTGCCTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 14 0.44
8 7 0.22
9 6 0.19
10 5 0.16
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TTCTTTTT
Found at i:79522370 original size:67 final size:67
Alignment explanation
Indices: 79522262--79522395 Score: 259
Period size: 67 Copynumber: 2.0 Consensus size: 67
79522252 CAAATTTAGC
79522262 AGCTGAGGGTATTGTTTCTGCCTGTGTTCTTTGTTCAGTTTTCTTTTTTTGGTAGAACCGACATA
1 AGCTGAGGGTATTGTTTCTGCCTGTGTTCTTTGTTCAGTTTTCTTTTTTTGGTAGAACCGACATA
79522327 CT
66 CT
*
79522329 AGCTGAGGGTATTGTTTCTGCCTGTGTTCTTTGTTCAGTTTTCTTTTTTTGGTAGAACTGACATA
1 AGCTGAGGGTATTGTTTCTGCCTGTGTTCTTTGTTCAGTTTTCTTTTTTTGGTAGAACCGACATA
79522394 CT
66 CT
79522396 TTGCTCTAAA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.15, C:0.16, G:0.22, T:0.47
Consensus pattern (67 bp):
AGCTGAGGGTATTGTTTCTGCCTGTGTTCTTTGTTCAGTTTTCTTTTTTTGGTAGAACCGACATA
CT
Found at i:79527346 original size:5 final size:5
Alignment explanation
Indices: 79527336--79527362 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
79527326 GCTATGGGCG
79527336 GTGGA GTGGA GTGGA GTGGA GTGGA GT
1 GTGGA GTGGA GTGGA GTGGA GTGGA GT
79527363 TAGTAAGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.59, T:0.22
Consensus pattern (5 bp):
GTGGA
Found at i:79530525 original size:2 final size:2
Alignment explanation
Indices: 79530520--79530552 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
79530510 AGAGAGAGAT
79530520 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
79530553 CAACTCAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:79531818 original size:9 final size:10
Alignment explanation
Indices: 79531798--79531824 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
79531788 TGAAATTATA
79531798 TTTTTAATTT
1 TTTTTAATTT
79531808 TTTTTAATTT
1 TTTTTAATTT
79531818 TTTTTAA
1 TTTTTAA
79531825 ATTTAAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTAATTT
Found at i:79540122 original size:12 final size:13
Alignment explanation
Indices: 79540095--79540150 Score: 60
Period size: 14 Copynumber: 4.2 Consensus size: 13
79540085 CAATTTAAAA
79540095 AATTAAATTAAATT
1 AATT-AATTAAATT
79540109 AATTAATT-AATT
1 AATTAATTAAATT
*
79540121 AATTAATATAAATA
1 AATTAAT-TAAATT
*
79540135 AATTGAATCAAATT
1 AATT-AATTAAATT
79540149 AA
1 AA
79540151 AAATTAATTG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
12 11 0.31
13 5 0.14
14 17 0.47
15 3 0.08
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (13 bp):
AATTAATTAAATT
Found at i:79542109 original size:14 final size:15
Alignment explanation
Indices: 79542084--79542112 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
79542074 ATCAAGAATT
79542084 AATATATAAATAAAA
1 AATATATAAATAAAA
79542099 AATAT-TAAATAAAA
1 AATATATAAATAAAA
79542113 TATAATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AATATATAAATAAAA
Found at i:79546048 original size:11 final size:11
Alignment explanation
Indices: 79546034--79546103 Score: 50
Period size: 11 Copynumber: 6.4 Consensus size: 11
79546024 CAATATTCGA
*
79546034 AAAATAACAAT
1 AAAATAACAAC
*
79546045 AAAATAAGAAC
1 AAAATAACAAC
* *
79546056 AATATAATAAC
1 AAAATAACAAC
** *
79546067 AAAATAGTAAT
1 AAAATAACAAC
*
79546078 AAAATAGCAAC
1 AAAATAACAAC
* *
79546089 AAAATTACAGC
1 AAAATAACAAC
79546100 AAAA
1 AAAA
79546104 CAGTTGATTC
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 47 1.00
ACGTcount: A:0.67, C:0.10, G:0.06, T:0.17
Consensus pattern (11 bp):
AAAATAACAAC
Found at i:79551727 original size:37 final size:37
Alignment explanation
Indices: 79551677--79551749 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
79551667 ATATCAAGTC
79551677 TTACACGTATTGAATAGATTCATATGCCAACCAGACT
1 TTACACGTATTGAATAGATTCATATGCCAACCAGACT
* *
79551714 TTACACTTATTGAATAGATTCTTATGCCAACCAGAC
1 TTACACGTATTGAATAGATTCATATGCCAACCAGAC
79551750 ATCAATGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (37 bp):
TTACACGTATTGAATAGATTCATATGCCAACCAGACT
Found at i:79554224 original size:18 final size:18
Alignment explanation
Indices: 79554201--79554250 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
79554191 TTATTGAAAA
*
79554201 TTATTTTATATTTTAAAT
1 TTATTTAATATTTTAAAT
* *
79554219 TTATTTAATTTTTTATAT
1 TTATTTAATATTTTAAAT
*
79554237 TTA-TAAATATTTTA
1 TTATTTAATATTTTA
79554251 TATGCTAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 9 0.33
18 18 0.67
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTATTTAATATTTTAAAT
Found at i:79554250 original size:25 final size:26
Alignment explanation
Indices: 79554199--79554250 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
79554189 TTTTATTGAA
*
79554199 AATTATTTTATATTTTAAATTTATTT
1 AATTATTTTATATTTTAAATATATTT
79554225 AATT-TTTTATATTTATAAATAT-TTT
1 AATTATTTTATATTT-TAAATATATTT
79554250 A
1 A
79554251 TATGCTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (26 bp):
AATTATTTTATATTTTAAATATATTT
Found at i:79554251 original size:17 final size:18
Alignment explanation
Indices: 79554208--79554253 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
79554198 AAATTATTTT
* *
79554208 ATATTTTAAATTTATTTA
1 ATATTTTATATTTATTAA
*
79554226 ATTTTTTATATTTA-TAA
1 ATATTTTATATTTATTAA
79554243 ATATTTTATAT
1 ATATTTTATAT
79554254 GCTAATATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATATTTTATATTTATTAA
Found at i:79562287 original size:46 final size:46
Alignment explanation
Indices: 79562233--79562510 Score: 378
Period size: 46 Copynumber: 6.0 Consensus size: 46
79562223 GTGTGCTCTC
*
79562233 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * *
79562279 TAATATGAAATGTGTAAGACCATGGTTGAAAGATAACATGACAGCA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
79562325 TGATATGAAATGTGTAAGACCAGGGTTGAAAGATACCATGGCAGCC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
*
79562371 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
***
79562417 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * * *
79562463 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
79562509 TG
1 TG
79562511 TCAAAGATAA
Statistics
Matches: 207, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 206 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:79563609 original size:10 final size:10
Alignment explanation
Indices: 79563594--79563620 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
79563584 ATAATCAATT
79563594 AATATTTGAA
1 AATATTTGAA
79563604 AATATTTGAA
1 AATATTTGAA
79563614 AATATTT
1 AATATTT
79563621 AATCTAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (10 bp):
AATATTTGAA
Found at i:79569254 original size:23 final size:24
Alignment explanation
Indices: 79569206--79569256 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
79569196 CTGTCTCTAT
79569206 AATTATAAAATATTAAAAAATTTA
1 AATTATAAAATATTAAAAAATTTA
79569230 AATTATAAAA-A-TAAAACAATTTA
1 AATTATAAAATATTAAAA-AATTTA
79569253 AATT
1 AATT
79569257 TTTTTATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 5 0.19
23 11 0.42
24 10 0.38
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
AATTATAAAATATTAAAAAATTTA
Found at i:79569302 original size:15 final size:14
Alignment explanation
Indices: 79569267--79569332 Score: 55
Period size: 14 Copynumber: 4.5 Consensus size: 14
79569257 TTTTTATGAA
79569267 ATAAAAATTA-AATT
1 ATAAAAATTATAA-T
79569281 ATGAAAAATATATAAT
1 AT-AAAAAT-TATAAT
*
79569297 AT-AAAATTATAAA
1 ATAAAAATTATAAT
*
79569310 ATAAAAATACATAAT
1 ATAAAAAT-TATAAT
79569325 ATTAAAAA
1 A-TAAAAA
79569333 AATAAAGATG
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
13 7 0.16
14 12 0.28
15 11 0.26
16 11 0.26
17 2 0.05
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (14 bp):
ATAAAAATTATAAT
Found at i:79579776 original size:11 final size:11
Alignment explanation
Indices: 79579745--79579769 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79579735 TGTTAAAAAG
79579745 TAACAAAATAA
1 TAACAAAATAA
79579756 TAACAAAATAA
1 TAACAAAATAA
79579767 TAA
1 TAA
79579770 TATAATAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (11 bp):
TAACAAAATAA
Found at i:79586725 original size:20 final size:20
Alignment explanation
Indices: 79586691--79586728 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
79586681 TGATCACTTC
79586691 GTAACAAAATAATAACATAA
1 GTAACAAAATAATAACATAA
79586711 GTAACTAAAAT-ATAACAT
1 GTAAC-AAAATAATAACAT
79586729 TTTAAACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.61, C:0.11, G:0.05, T:0.24
Consensus pattern (20 bp):
GTAACAAAATAATAACATAA
Found at i:79586769 original size:29 final size:28
Alignment explanation
Indices: 79586704--79586763 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
79586694 ACAAAATAAT
* *
79586704 AACATAAGTAACTAAAATATAACATTTTA
1 AACATAAATAACTAAAATATAACA-TTGA
79586733 AACATAAATAACTAAAATATAAC-TTGA
1 AACATAAATAACTAAAATATAACATTGA
79586760 AACA
1 AACA
79586764 AATAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 7 0.24
29 22 0.76
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27
Consensus pattern (28 bp):
AACATAAATAACTAAAATATAACATTGA
Found at i:79587786 original size:17 final size:18
Alignment explanation
Indices: 79587747--79587786 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
79587737 AAACGTATTT
79587747 TAAAATTTCAGATAAATA
1 TAAAATTTCAGATAAATA
79587765 T-AAATTT-A-ATCAAATA
1 TAAAATTTCAGAT-AAATA
79587781 TAAAAT
1 TAAAAT
79587787 ATATTAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
15 2 0.10
16 7 0.35
17 10 0.50
18 1 0.05
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (18 bp):
TAAAATTTCAGATAAATA
Found at i:79597287 original size:37 final size:37
Alignment explanation
Indices: 79597246--79597319 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
79597236 TAAGAAATGG
79597246 CAAGCTTAATAGGCTGTATTCAAAACCGATTAAACTC
1 CAAGCTTAATAGGCTGTATTCAAAACCGATTAAACTC
*
79597283 CAAGCTTAATAGGCTGTATTCAAAACTGATTAAACTC
1 CAAGCTTAATAGGCTGTATTCAAAACCGATTAAACTC
79597320 AGCATATCGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (37 bp):
CAAGCTTAATAGGCTGTATTCAAAACCGATTAAACTC
Found at i:79597953 original size:146 final size:146
Alignment explanation
Indices: 79597689--79597982 Score: 588
Period size: 146 Copynumber: 2.0 Consensus size: 146
79597679 AGTAGTAAAT
79597689 CAACAAATAAAAACAAGGCTGCATCCCGATTCTGAAGGCCAGATTAATATTGTTTTTCACCAGTC
1 CAACAAATAAAAACAAGGCTGCATCCCGATTCTGAAGGCCAGATTAATATTGTTTTTCACCAGTC
79597754 AAGTACTCACTGACTAATGTTGAATTATCAATCACTAAGATGGCCTCCTGGAGACAAAATGAACC
66 AAGTACTCACTGACTAATGTTGAATTATCAATCACTAAGATGGCCTCCTGGAGACAAAATGAACC
79597819 AAAAACGGATTCATTG
131 AAAAACGGATTCATTG
79597835 CAACAAATAAAAACAAGGCTGCATCCCGATTCTGAAGGCCAGATTAATATTGTTTTTCACCAGTC
1 CAACAAATAAAAACAAGGCTGCATCCCGATTCTGAAGGCCAGATTAATATTGTTTTTCACCAGTC
79597900 AAGTACTCACTGACTAATGTTGAATTATCAATCACTAAGATGGCCTCCTGGAGACAAAATGAACC
66 AAGTACTCACTGACTAATGTTGAATTATCAATCACTAAGATGGCCTCCTGGAGACAAAATGAACC
79597965 AAAAACGGATTCATTG
131 AAAAACGGATTCATTG
79597981 CA
1 CA
79597983 TCCAGCAACT
Statistics
Matches: 148, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
146 148 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.25
Consensus pattern (146 bp):
CAACAAATAAAAACAAGGCTGCATCCCGATTCTGAAGGCCAGATTAATATTGTTTTTCACCAGTC
AAGTACTCACTGACTAATGTTGAATTATCAATCACTAAGATGGCCTCCTGGAGACAAAATGAACC
AAAAACGGATTCATTG
Found at i:79605027 original size:13 final size:13
Alignment explanation
Indices: 79604994--79605055 Score: 70
Period size: 13 Copynumber: 4.7 Consensus size: 13
79604984 TTTTCATTAT
*
79604994 TTTTAAAAAGTGC
1 TTTTAAAAAGTAC
* *
79605007 TGTGAAAAAGTAC
1 TTTTAAAAAGTAC
*
79605020 TTTTAAAAAATAC
1 TTTTAAAAAGTAC
*
79605033 TTTTAAAAAGTGC
1 TTTTAAAAAGTAC
79605046 TTTGTAAAAA
1 TTT-TAAAAA
79605056 TTTAAGTGTT
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
13 34 0.85
14 6 0.15
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.35
Consensus pattern (13 bp):
TTTTAAAAAGTAC
Found at i:79612533 original size:2 final size:2
Alignment explanation
Indices: 79612526--79612555 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
79612516 AGGAATATGG
79612526 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79612556 ACTCATCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79616511 original size:51 final size:51
Alignment explanation
Indices: 79616440--79616650 Score: 343
Period size: 51 Copynumber: 4.2 Consensus size: 51
79616430 CTGATCACAT
*
79616440 TTATCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
79616491 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
79616541 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * * *
79616592 TTGTCACTTATCACTGATTAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
79616643 TTGTCACT
1 TTATCACT
79616651 GATCAGAAGT
Statistics
Matches: 151, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
50 49 0.32
51 102 0.68
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:79616542 original size:101 final size:102
Alignment explanation
Indices: 79616437--79616650 Score: 358
Period size: 101 Copynumber: 2.1 Consensus size: 102
79616427 ACACTGATCA
*
79616437 CATTTATCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTTATCACTTATCACTTGT
1 CATTTATCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTTATCACTTATCACTTAT
79616502 CACTGATCAGATAAGTGTAGCT-AAGCTACCACTTAT
66 CACTGATCAGATAAGTGTAGCTGAAGCTACCACTTAT
* *
79616538 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTAT
1 CATTTATCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTTATCACTTATCACTTAT
* *
79616603 CACTGATTAGATAAGTGTAGCTGAGGCTACCACTTAT
66 CACTGATCAGATAAGTGTAGCTGAAGCTACCACTTAT
* *
79616640 CACTTGTCACT
1 CATTTATCACT
79616651 GATCAGAAGT
Statistics
Matches: 105, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
101 83 0.79
102 22 0.21
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (102 bp):
CATTTATCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTTATCACTTATCACTTAT
CACTGATCAGATAAGTGTAGCTGAAGCTACCACTTAT
Found at i:79623299 original size:51 final size:51
Alignment explanation
Indices: 79623225--79623435 Score: 325
Period size: 51 Copynumber: 4.2 Consensus size: 51
79623215 CTGATCACAT
* * *
79623225 TTATCACTTGTAACTGATTAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCAC
* *
79623276 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCAC
79623326 TTATCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * *
79623377 TTGTCACTTATCACTGATCAAATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCAC
*
79623428 TTGTCACT
1 TTATCACT
79623436 GATCAAAAGT
Statistics
Matches: 150, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
50 48 0.32
51 102 0.68
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:79623327 original size:101 final size:102
Alignment explanation
Indices: 79623222--79623435 Score: 340
Period size: 101 Copynumber: 2.1 Consensus size: 102
79623212 ACACTGATCA
* * *
79623222 CATTTATCACTTGTAACTGATTAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTGT
1 CATTTATCACTTGTAACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTAT
*
79623287 CACTGATCAGATAAGTGTAGCT-AAGCTACCACTTAT
66 CACTGATCAAATAAGTGTAGCTGAAGCTACCACTTAT
* *
79623323 CATTTATCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTAT
1 CATTTATCACTTGTAACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTAT
*
79623388 CACTGATCAAATAAGTGTAGCTGAGGCTACCACTTAT
66 CACTGATCAAATAAGTGTAGCTGAAGCTACCACTTAT
* *
79623425 CACTTGTCACT
1 CATTTATCACT
79623436 GATCAAAAGT
Statistics
Matches: 103, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
101 81 0.79
102 22 0.21
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (102 bp):
CATTTATCACTTGTAACTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTAT
CACTGATCAAATAAGTGTAGCTGAAGCTACCACTTAT
Found at i:79648478 original size:30 final size:29
Alignment explanation
Indices: 79648412--79648490 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 29
79648402 ATTTTTTAAA
* * *
79648412 ATTTTAAAAATTTAAAAAAATTATAAATACT
1 ATTTTTAAAATTT--AAAAATCATAAAAACT
*
79648443 ATTTTTAAAGA-TTAAAAATCATAAAAATT
1 ATTTTTAAA-ATTTAAAAATCATAAAAACT
79648472 ATTTTTTAAAATTTAAAAA
1 A-TTTTTAAAATTTAAAAA
79648491 ATTAATTAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
29 15 0.37
30 15 0.37
31 10 0.24
32 1 0.02
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.41
Consensus pattern (29 bp):
ATTTTTAAAATTTAAAAATCATAAAAACT
Found at i:79650039 original size:20 final size:20
Alignment explanation
Indices: 79650016--79650132 Score: 74
Period size: 20 Copynumber: 5.4 Consensus size: 20
79650006 TGATATAAAC
79650016 TTATAAAAATTATAAAAAAA
1 TTATAAAAATTATAAAAAAA
**
79650036 TTATAAGTATTATAAAAATCTAA
1 TTATAAAAATTATAAAAA---AA
* * *
79650059 TAAAATATAAATATTTTATAAAAA
1 T----TATAAAAATTATAAAAAAA
*
79650083 TTACT-AAAATTATATAAAAA
1 TTA-TAAAAATTATAAAAAAA
*
79650103 TCATAAAAATTATAAAAAAA
1 TTATAAAAATTATAAAAAAA
79650123 GTTTATAAAA
1 --TTATAAAA
79650133 TTGTTAAATT
Statistics
Matches: 76, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
19 1 0.01
20 47 0.62
21 1 0.01
22 7 0.09
23 3 0.04
24 3 0.04
27 14 0.18
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.34
Consensus pattern (20 bp):
TTATAAAAATTATAAAAAAA
Found at i:79650049 original size:29 final size:28
Alignment explanation
Indices: 79650008--79650122 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 28
79649998 ATTAAAATTG
*
79650008 ATATAAA-CTTATAAAAATTATAAAAAA
1 ATATAAATATTATAAAAATTATAAAAAA
* * *
79650035 ATTATAAGTATTATAAAAA-TCTAATAAA
1 A-TATAAATATTATAAAAATTATAAAAAA
**
79650063 ATATAAATATTTTATAAAAATTACTAAAATT
1 ATATAAATA--TTATAAAAATTA-TAAAAAA
* *
79650094 ATATAAAAATCATAAAAATTATAAAAAA
1 ATATAAATATTATAAAAATTATAAAAAA
79650122 A
1 A
79650123 GTTTATAAAA
Statistics
Matches: 69, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
27 8 0.12
28 19 0.28
29 29 0.42
30 1 0.01
31 12 0.17
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (28 bp):
ATATAAATATTATAAAAATTATAAAAAA
Found at i:79650740 original size:10 final size:9
Alignment explanation
Indices: 79650702--79650769 Score: 59
Period size: 10 Copynumber: 7.4 Consensus size: 9
79650692 GTTTGATTAA
79650702 TTTATAATT
1 TTTATAATT
*
79650711 TATTAGAATT
1 T-TTATAATT
79650721 TTTAT-ATT
1 TTTATAATT
79650729 TTTATAAGTT
1 TTTATAA-TT
79650739 TTTATAAGTT
1 TTTATAA-TT
* *
79650749 TATATAAAT
1 TTTATAATT
*
79650758 TTCAT-ATT
1 TTTATAATT
79650766 TTTA
1 TTTA
79650770 ATGTTTGATA
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
8 13 0.27
9 9 0.19
10 26 0.54
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.60
Consensus pattern (9 bp):
TTTATAATT
Found at i:79655489 original size:19 final size:20
Alignment explanation
Indices: 79655449--79655489 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
79655439 GTTTTTCAAA
*
79655449 TTTCAAAAATGAGAATTATT
1 TTTCAAAAATGAGAAATATT
*
79655469 TTTCGAAAATGA-AAATATT
1 TTTCAAAAATGAGAAATATT
79655488 TT
1 TT
79655490 GATTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (20 bp):
TTTCAAAAATGAGAAATATT
Found at i:79670800 original size:17 final size:16
Alignment explanation
Indices: 79670770--79670818 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
79670760 TACTGTGTTA
*
79670770 TATTTTTTAAAAAATT
1 TATTTTTAAAAAAATT
*
79670786 TATTTTTAAATAAAAAT
1 TATTTTTAAA-AAAATT
*
79670803 TAATTTTAAAAAAATT
1 TATTTTTAAAAAAATT
79670819 CAAATATAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 14 0.50
17 14 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TATTTTTAAAAAAATT
Found at i:79681896 original size:29 final size:31
Alignment explanation
Indices: 79681855--79681923 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
79681845 TTTAAACTAC
*
79681855 AATTAAAGTTTTACGTATATAA-T-TACATCA
1 AATTAAA-ATTTACGTATATAATTATACATCA
* *
79681885 AATTAAAATTTATGTATATAATTATACATTA
1 AATTAAAATTTACGTATATAATTATACATCA
79681916 AATTAAAA
1 AATTAAAA
79681924 AATTTTTTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 12 0.35
30 8 0.24
31 14 0.41
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (31 bp):
AATTAAAATTTACGTATATAATTATACATCA
Found at i:79682770 original size:2 final size:2
Alignment explanation
Indices: 79682763--79682796 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
79682753 CAACTAAAAT
*
79682763 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
79682797 CTAAATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:79684851 original size:40 final size:40
Alignment explanation
Indices: 79684807--79684887 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
79684797 TCAAATACAT
79684807 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
* * * * **
79684847 TTAAAACAATTCTTAAAACAATACACAAATTGAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
79684887 T
1 T
79684888 AATAAAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.63, C:0.10, G:0.02, T:0.25
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
Found at i:79684896 original size:20 final size:19
Alignment explanation
Indices: 79684873--79684930 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
79684863 AACAATACAC
79684873 AAATTGAAAATATATAATAA
1 AAATTGAAAATATA-AATAA
** *
79684893 AAATTGATTATATTAAAATTA
1 AAATTGAAAATA-T-AAATAA
79684914 AAATT-AAAATATAAATA
1 AAATTGAAAATATAAATA
79684931 TAATTAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
18 4 0.13
19 1 0.03
20 14 0.47
21 10 0.33
22 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
AAATTGAAAATATAAATAA
Found at i:79684938 original size:23 final size:23
Alignment explanation
Indices: 79684909--79684954 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
79684899 ATTATATTAA
* *
79684909 AATTAAAATTAAAATATAAATAT
1 AATTAAAAATAAAAAATAAATAT
*
79684932 AATTAAAAATAAAAAATATATAT
1 AATTAAAAATAAAAAATAAATAT
79684955 TTATTATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
AATTAAAAATAAAAAATAAATAT
Found at i:79690193 original size:75 final size:73
Alignment explanation
Indices: 79690105--79690276 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
79690095 GGTTTTCCTC
*** * * **
79690105 ATTGAAATACCATACCTACATTTTTTAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
79690169 TCAGTATGG
65 TCAGTATGG
*
79690178 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
79690243 CTCAGTATGG
64 CTCAGTATGG
79690253 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
79690277 CTTTTCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:79690274 original size:35 final size:35
Alignment explanation
Indices: 79690110--79690276 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
79690100 TCCTCATTGA
*** *
79690110 AATACCATACCTACATTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
79690145 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
79690185 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
79690220 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
79690255 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
79690277 CTTTTCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
35 88 0.75
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:79697670 original size:75 final size:73
Alignment explanation
Indices: 79697582--79697753 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
79697572 GGTTTTCCTC
*** * * **
79697582 ATTGAAATACCATACCTACATTTTTTAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
79697646 TCAGTATGG
65 TCAGTATGG
*
79697655 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
79697720 CTCAGTATGG
64 CTCAGTATGG
79697730 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
79697754 CTTTTCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:79697751 original size:35 final size:35
Alignment explanation
Indices: 79697587--79697753 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
79697577 TCCTCATTGA
*** *
79697587 AATACCATACCTACATTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
79697622 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
79697662 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
79697697 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
79697732 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
79697754 CTTTTCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
35 88 0.75
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:79700576 original size:3 final size:3
Alignment explanation
Indices: 79700568--79700607 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
79700558 TTAATTCTAG
79700568 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
79700608 CGTTGAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:79702673 original size:28 final size:28
Alignment explanation
Indices: 79702633--79702697 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
79702623 ACTTGGCATA
79702633 GAATATTTCTTTTACCTCCTCTAGAAAT
1 GAATATTTCTTTTACCTCCTCTAGAAAT
79702661 GAATATTTCTTTTACCTCCTCTAGAAAT
1 GAATATTTCTTTTACCTCCTCTAGAAAT
* *
79702689 TAACATTTC
1 GAATATTTC
79702698 AATTTAACCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.29, C:0.22, G:0.06, T:0.43
Consensus pattern (28 bp):
GAATATTTCTTTTACCTCCTCTAGAAAT
Found at i:79713286 original size:27 final size:27
Alignment explanation
Indices: 79713254--79713369 Score: 69
Period size: 27 Copynumber: 4.3 Consensus size: 27
79713244 ATTAATTTGT
79713254 TTGAATTATTTCTATTTTATATGTAAA
1 TTGAATTATTTCTATTTTATATGTAAA
* ** * *
79713281 TTGAATT-TTTTTATAAATATTTTTAAA
1 TTGAATTATTTCTAT-TTTATATGTAAA
* * * * *
79713308 AT-ATTTAGTCTTGT-TTTTATTAAT-TTAT
1 TTGAATTA-T-TTCTATTTTA-T-ATGTAAA
79713336 TTGAATTATTTCTATTTTATATGTAAA
1 TTGAATTATTTCTATTTTATATGTAAA
79713363 TTGAATT
1 TTGAATT
79713370 TTTTAATAGA
Statistics
Matches: 62, Mismatches: 18, Indels: 18
0.63 0.18 0.18
Matches are distributed among these distances:
26 11 0.18
27 31 0.50
28 12 0.19
29 8 0.13
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.59
Consensus pattern (27 bp):
TTGAATTATTTCTATTTTATATGTAAA
Found at i:79713291 original size:82 final size:82
Alignment explanation
Indices: 79713205--79713373 Score: 320
Period size: 82 Copynumber: 2.1 Consensus size: 82
79713195 TAAATTTAGA
* *
79713205 TTTTTTATAAATATTTTTAAAATCTTTAGTCTTGTTTTTATTAATTTGTTTGAATTATTTCTATT
1 TTTTTTATAAATATTTTTAAAATATTTAGTCTTGTTTTTATTAATTTATTTGAATTATTTCTATT
79713270 TTATATGTAAATTGAAT
66 TTATATGTAAATTGAAT
79713287 TTTTTTATAAATATTTTTAAAATATTTAGTCTTGTTTTTATTAATTTATTTGAATTATTTCTATT
1 TTTTTTATAAATATTTTTAAAATATTTAGTCTTGTTTTTATTAATTTATTTGAATTATTTCTATT
79713352 TTATATGTAAATTGAAT
66 TTATATGTAAATTGAAT
79713369 TTTTT
1 TTTTT
79713374 AATAGATACC
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 85 1.00
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.61
Consensus pattern (82 bp):
TTTTTTATAAATATTTTTAAAATATTTAGTCTTGTTTTTATTAATTTATTTGAATTATTTCTATT
TTATATGTAAATTGAAT
Found at i:79713641 original size:14 final size:14
Alignment explanation
Indices: 79713622--79713673 Score: 65
Period size: 13 Copynumber: 3.9 Consensus size: 14
79713612 AGCCTCGAAT
*
79713622 CTCAAAATCTAAAC
1 CTCAAACTCTAAAC
79713636 CTCAAACTCTAAA-
1 CTCAAACTCTAAAC
79713649 CTCAAACT-TAAAC
1 CTCAAACTCTAAAC
*
79713662 CTTAAACT-TAAA
1 CTCAAACTCTAAA
79713674 ATTTTAAACC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
12 4 0.11
13 19 0.54
14 12 0.34
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.25
Consensus pattern (14 bp):
CTCAAACTCTAAAC
Found at i:79723716 original size:35 final size:35
Alignment explanation
Indices: 79723649--79723816 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
79723639 TCCTCATTGA
*** *
79723649 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
79723685 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
79723725 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
79723760 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
79723795 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
79723817 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
35 74 0.63
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:79723775 original size:75 final size:73
Alignment explanation
Indices: 79723644--79723816 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 73
79723634 GGTTTTCCTC
*** * * **
79723644 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
79723709 TCAGTATGG
65 TCAGTATGG
*
79723718 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
79723782 ACTCAGTATGG
63 ACTCAGTATGG
79723793 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
79723817 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 4 0.05
75 46 0.52
76 15 0.17
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:79733053 original size:17 final size:16
Alignment explanation
Indices: 79733021--79733052 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
79733011 TTTTGCTGAA
79733021 GAAAAAAAATTGTTTT
1 GAAAAAAAATTGTTTT
79733037 GAAAAAAAATTGTTTT
1 GAAAAAAAATTGTTTT
79733053 TCATTTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (16 bp):
GAAAAAAAATTGTTTT
Found at i:79737135 original size:12 final size:12
Alignment explanation
Indices: 79737115--79737148 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
79737105 TATAAAACAA
*
79737115 ATATATGTATGT
1 ATATATGTATGC
*
79737127 ATGTATGTATGC
1 ATATATGTATGC
79737139 ATATATGTAT
1 ATATATGTAT
79737149 ATCAGCTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.47
Consensus pattern (12 bp):
ATATATGTATGC
Found at i:79740617 original size:31 final size:31
Alignment explanation
Indices: 79740578--79740658 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
79740568 GTTGAAAAAT
* *
79740578 AAAAACTCAAGA-ACTAATTTAAATATTAAAG
1 AAAAACTCAA-ATACTAAATTAAAAATTAAAG
* *
79740609 CAAGACTCAAATACTAAATTAAAAATTAAAG
1 AAAAACTCAAATACTAAATTAAAAATTAAAG
* *
79740640 AAAAACTCAATTACCAAAT
1 AAAAACTCAAATACTAAAT
79740659 AGTATATTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
30 1 0.02
31 40 0.98
ACGTcount: A:0.58, C:0.14, G:0.05, T:0.23
Consensus pattern (31 bp):
AAAAACTCAAATACTAAATTAAAAATTAAAG
Found at i:79741450 original size:31 final size:31
Alignment explanation
Indices: 79741373--79741431 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
79741363 CCAATGATTT
* * *
79741373 AAATGAAAATTTCTGAATAATTTAGTGATCA
1 AAATGAACATTTATCAATAATTTAGTGATCA
79741404 AAATGAACATTTATCAATAATTTAGTGA
1 AAATGAACATTTATCAATAATTTAGTGA
79741432 CTAATGACGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.36
Consensus pattern (31 bp):
AAATGAACATTTATCAATAATTTAGTGATCA
Found at i:79743514 original size:11 final size:10
Alignment explanation
Indices: 79743498--79743522 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
79743488 GGCAAAACTG
79743498 TTTTTTTTTA
1 TTTTTTTTTA
79743508 TTTTTTTTTA
1 TTTTTTTTTA
79743518 TTTTT
1 TTTTT
79743523 GGTGAGAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:79749456 original size:222 final size:222
Alignment explanation
Indices: 79749070--79749512 Score: 886
Period size: 222 Copynumber: 2.0 Consensus size: 222
79749060 AGTTCTAGAT
79749070 CCTGGAACTCTGGATAAAACATCCAGTCCTCCCAAGGCCAGCTTCGTATGCACGTTGGTTACAAT
1 CCTGGAACTCTGGATAAAACATCCAGTCCTCCCAAGGCCAGCTTCGTATGCACGTTGGTTACAAT
79749135 AATAAACAAAAGAAGTCATTTTCAAGCAATACCTGATCCCGATTATTGCTAAATATGCAGCATTA
66 AATAAACAAAAGAAGTCATTTTCAAGCAATACCTGATCCCGATTATTGCTAAATATGCAGCATTA
79749200 TAGAACGCCGACAAAGACCAACTTAATTTGATGCAAAGTAACAAGACATTCATGAAACAAGAATA
131 TAGAACGCCGACAAAGACCAACTTAATTTGATGCAAAGTAACAAGACATTCATGAAACAAGAATA
79749265 CTCAAATATTTGAACTTAAATAAAGCA
196 CTCAAATATTTGAACTTAAATAAAGCA
79749292 CCTGGAACTCTGGATAAAACATCCAGTCCTCCCAAGGCCAGCTTCGTATGCACGTTGGTTACAAT
1 CCTGGAACTCTGGATAAAACATCCAGTCCTCCCAAGGCCAGCTTCGTATGCACGTTGGTTACAAT
79749357 AATAAACAAAAGAAGTCATTTTCAAGCAATACCTGATCCCGATTATTGCTAAATATGCAGCATTA
66 AATAAACAAAAGAAGTCATTTTCAAGCAATACCTGATCCCGATTATTGCTAAATATGCAGCATTA
79749422 TAGAACGCCGACAAAGACCAACTTAATTTGATGCAAAGTAACAAGACATTCATGAAACAAGAATA
131 TAGAACGCCGACAAAGACCAACTTAATTTGATGCAAAGTAACAAGACATTCATGAAACAAGAATA
79749487 CTCAAATATTTGAACTTAAATAAAGC
196 CTCAAATATTTGAACTTAAATAAAGC
79749513 TCCAACACCA
Statistics
Matches: 221, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
222 221 1.00
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (222 bp):
CCTGGAACTCTGGATAAAACATCCAGTCCTCCCAAGGCCAGCTTCGTATGCACGTTGGTTACAAT
AATAAACAAAAGAAGTCATTTTCAAGCAATACCTGATCCCGATTATTGCTAAATATGCAGCATTA
TAGAACGCCGACAAAGACCAACTTAATTTGATGCAAAGTAACAAGACATTCATGAAACAAGAATA
CTCAAATATTTGAACTTAAATAAAGCA
Found at i:79760180 original size:28 final size:28
Alignment explanation
Indices: 79760148--79760210 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
79760138 TTCCATATTA
*
79760148 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATACGAAAAGTCTCATAACTT
* * *
79760176 ATGGGGTATACGAAGAGTTTTATAACTT
1 ATGGGGTATACGAAAAGTCTCATAACTT
79760204 ATGGGGT
1 ATGGGGT
79760211 TGATAATGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.32
Consensus pattern (28 bp):
ATGGGGTATACGAAAAGTCTCATAACTT
Found at i:79760785 original size:30 final size:31
Alignment explanation
Indices: 79760730--79760793 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
79760720 AATAATTTAA
** *
79760730 TTATTCAGTGATTTTATTTTAAGTAATATTT
1 TTATTCAAAGATTTTATTATAAGTAATATTT
79760761 TTATTCAAAGATTTTA-TATAAGTAATATTT
1 TTATTCAAAGATTTTATTATAAGTAATATTT
79760791 TTA
1 TTA
79760794 AAATAGTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 16 0.53
31 14 0.47
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.55
Consensus pattern (31 bp):
TTATTCAAAGATTTTATTATAAGTAATATTT
Found at i:79763564 original size:5 final size:5
Alignment explanation
Indices: 79763556--79763580 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
79763546 CAAACTTTTA
79763556 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
79763581 TACTTATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:79767990 original size:11 final size:11
Alignment explanation
Indices: 79767961--79767992 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
79767951 TCTCCCTATT
*
79767961 TTACTATAATG
1 TTACTATTATG
79767972 TTACTATTATG
1 TTACTATTATG
79767983 TTACTATTAT
1 TTACTATTAT
79767993 TTTGTTGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.31, C:0.09, G:0.06, T:0.53
Consensus pattern (11 bp):
TTACTATTATG
Found at i:79768068 original size:30 final size:30
Alignment explanation
Indices: 79768034--79768092 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
79768024 CTTTTTTTTT
79768034 GTTAATTTTGTTATTATTTTAAAGGCATTC
1 GTTAATTTTGTTATTATTTTAAAGGCATTC
*
79768064 GTTAATTTTGTTATTATTTTACAGGCATT
1 GTTAATTTTGTTATTATTTTAAAGGCATT
79768093 TACTTGTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.07, G:0.14, T:0.54
Consensus pattern (30 bp):
GTTAATTTTGTTATTATTTTAAAGGCATTC
Found at i:79777176 original size:26 final size:26
Alignment explanation
Indices: 79777140--79777193 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
79777130 AGAGAGGGTT
79777140 AAAATATTAGTATTAAACTTGGAACG
1 AAAATATTAGTATTAAACTTGGAACG
79777166 AAAATATTAGTATTAAACTTGGAACG
1 AAAATATTAGTATTAAACTTGGAACG
79777192 AA
1 AA
79777194 CACCATAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (26 bp):
AAAATATTAGTATTAAACTTGGAACG
Found at i:79789101 original size:29 final size:29
Alignment explanation
Indices: 79789059--79789116 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
79789049 GAGAATAAAA
79789059 TTACAGATAGACTTGTCAAGATAGTTCGT
1 TTACAGATAGACTTGTCAAGATAGTTCGT
79789088 TTACAGATAGACTTGTCAAGATAGTTCGT
1 TTACAGATAGACTTGTCAAGATAGTTCGT
79789117 GAAGGAAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (29 bp):
TTACAGATAGACTTGTCAAGATAGTTCGT
Found at i:79789566 original size:25 final size:25
Alignment explanation
Indices: 79789532--79789583 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
79789522 TTTGTTGACC
79789532 AATAAAACCGGCCAAGTAGAAAACT
1 AATAAAACCGGCCAAGTAGAAAACT
79789557 AATAAAACCGGCCAAGTAGAAAACT
1 AATAAAACCGGCCAAGTAGAAAACT
79789582 AA
1 AA
79789584 GTTATAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.54, C:0.19, G:0.15, T:0.12
Consensus pattern (25 bp):
AATAAAACCGGCCAAGTAGAAAACT
Done.